1 | #column 1 column 2 column 3 |
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2 | #name of variable value of variable (~ must not be used) scope |
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3 | #---------------------------------------------------------------------------- |
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4 | %mainprog palm.f90 |
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5 | %base_directory $HOME/palm/current_version |
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6 | %base_data ~/palm/current_version/JOBS |
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7 | %source_path $base_directory/trunk/SOURCE |
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8 | %add_source_path $base_directory/USER_CODE/$fname |
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9 | %depository_path $base_directory/MAKE_DEPOSITORY |
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10 | %use_makefile true |
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11 | # |
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12 | # Enter your own host below by adding another line containing in the second |
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13 | # column your hostname (as provided by the unix command "hostname") and in the |
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14 | # third column the host identifier. Depending on your operating system, the |
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15 | # first characters of the host identifier should be "lc" (Linux cluster), "ibm" |
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16 | # (IBM-AIX), or "nec" (NEC-SX), respectively. |
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17 | # |
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18 | # The next line is just an example. Add your own line below or replace this line. |
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19 | %host_identifier sx-* necriam |
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20 | # |
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21 | # |
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22 | # The next block contains all informations for compiling the PALM code |
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23 | # and for generating and running the PALM executable using MPI. Replace all |
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24 | # required paths (given in <>) by the respective paths valid on your host. |
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25 | # Also replace <hi> by your host identifier (see above) in each line! |
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26 | # Compilernames, cpp-options and compiler-options are assuming |
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27 | # an Intel-Compiler and mpich2 on this host! Please change |
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28 | # appropriately, if you are using a different compiler / MPI-Version. |
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29 | # |
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30 | # |
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31 | %compiler_name sxmpif90 necriam parallel |
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32 | %compiler_name_ser sxf90 necriam parallel |
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33 | %cpp_options -Ep:-D__mpi2:-DMPI_REAL=MPI_REAL8:-DMPI_2REAL=MPI_2REAL8:-DSCFFT=DZFFT:-DCSFFT=ZDFFT:-D__netcdf:-D__netcdf_64bit necriam parallel |
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34 | %netcdf_inc -I:/home/COAR/NC/tatuyama/pub/netcdf-3.6.0-p1/include necriam parallel |
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35 | %netcdf_lib -L/home/COAR/NC/tatuyama/pub/netcdf-3.6.0-p1/lib:-lnetcdf necriam parallel |
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36 | %dvr_inc -I:/home/COAR/NC/raasch/dvr/lib necriam parallel |
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37 | %dvr_lib -L/home/COAR/NC/raasch/dvr/lib:-lDVRP2:-lftp necriam parallel |
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38 | %fopts -C:hopt:-Wf:\'-init:stack=nan:-init:heap=nan:-A:idbl4:-pvctl:fullmsg\':-ftrace:-P:stack:-pi:auto:-pi:line=1000 necriam parallel |
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39 | %lopts -C:hopt:-Wf:\'-init:stack=nan:-init:heap=nan:-A:idbl4\':-ftrace:-P:stack:-pi:auto:-pi:line=1000:-L/SX/opt/mathkeisan/MK3_0/lib0/:-l:fft necriam parallel |
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40 | %memory 4000 necriam parallel |
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41 | %cpumax 1000 necriam parallel |
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42 | %numprocs 4 necriam parallel |
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43 | %tmp_data_catalog /work/<replace by your username>/restart_data necriam parallel |
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44 | %tmp_user_catalog /work/<replace by your username> necriam parallel |
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45 | %remote_username <replace by your username> necriam parallel |
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46 | # |
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47 | %write_binary true restart |
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48 | # |
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49 | #---------------------------------------------------------------------------- |
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50 | # INPUT-commands, executed before running PALM - lines must start with "IC:" |
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51 | #---------------------------------------------------------------------------- |
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52 | #IC: |
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53 | # |
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54 | #---------------------------------------------------------------------------- |
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55 | # ERROR-commands - executed when program terminates abnormally |
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56 | #---------------------------------------------------------------------------- |
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57 | EC:[[ \$locat = execution ]] && cat RUN_CONTROL |
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58 | EC:pwd; ls -al |
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59 | # |
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60 | #---------------------------------------------------------------------------- |
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61 | # OUTPUT-commands - executed when program terminates normally |
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62 | #---------------------------------------------------------------------------- |
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63 | # |
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64 | # Combine 1D- and 3D-profile output (these files are not usable for plotting) |
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65 | OC:[[ -f LIST_PROFIL_1D ]] && cat LIST_PROFIL_1D >> LIST_PROFILE |
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66 | OC:[[ -f LIST_PROFIL ]] && cat LIST_PROFIL >> LIST_PROFILE |
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67 | # |
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68 | # Combine all particle information files |
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69 | OC:[[ -f PARTICLE_INFOS/_0000 ]] && cat PARTICLE_INFOS/* >> PARTICLE_INFO |
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70 | # |
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71 | # Collect plot data (2d/3d) into one file |
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72 | OC:combine_plot_fields.x |
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73 | # |
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74 | #---------------------------------------------------------------------------- |
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75 | # List of input-files |
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76 | #---------------------------------------------------------------------------- |
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77 | PARIN in:job d3# $base_data/$fname/INPUT _p3d |
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78 | PARIN in:job d3f $base_data/$fname/INPUT _p3df |
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79 | TOPOGRAPHY_DATA in:locopt d3#:d3f $base_data/$fname/INPUT _topo |
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80 | BININ in:loc:flpe d3f $base_data/$fname/RESTART _d3d |
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81 | PARTICLE_RESTART_DATA_IN in:loc:flpe prtf $base_data/$fname/RESTART _rprt |
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82 | DATA_1D_PR_NETCDF in:locopt prf $base_data/$fname/OUTPUT _pr nc |
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83 | DATA_1D_SP_NETCDF in:locopt spf $base_data/$fname/OUTPUT _sp nc |
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84 | DATA_1D_TS_NETCDF in:locopt tsf $base_data/$fname/OUTPUT _ts nc |
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85 | DATA_1D_PTS_NETCDF in:locopt ptsf $base_data/$fname/OUTPUT _pts nc |
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86 | DATA_2D_XY_NETCDF in:locopt xyf $base_data/$fname/OUTPUT _xy nc |
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87 | DATA_2D_XY_AV_NETCDF in:locopt xyf $base_data/$fname/OUTPUT _xy_av nc |
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88 | DATA_2D_XZ_NETCDF in:locopt xzf $base_data/$fname/OUTPUT _xz nc |
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89 | DATA_2D_YZ_NETCDF in:locopt yzf $base_data/$fname/OUTPUT _yz nc |
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90 | DATA_3D_NETCDF in:locopt 3df $base_data/$fname/OUTPUT _3d nc |
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91 | DATA_PRT_NETCDF in:locopt:pe prtf $base_data/$fname/OUTPUT _prt |
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92 | # |
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93 | #---------------------------------------------------------------------------- |
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94 | # List of output-files |
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95 | #---------------------------------------------------------------------------- |
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96 | BINOUT out:loc:flpe restart $base_data/$fname/RESTART _d3d |
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97 | PARTICLE_RESTART_DATA_OUT out:loc:flpe prt#:prtf $base_data/$fname/RESTART _rprt |
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98 | # |
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99 | RUN_CONTROL out:loc:tr d3# $base_data/$fname/MONITORING _rc |
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100 | RUN_CONTROL out:loc:tra d3f $base_data/$fname/MONITORING _rc |
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101 | HEADER out:loc:tr d3# $base_data/$fname/MONITORING _header |
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102 | HEADER out:loc:tra d3f $base_data/$fname/MONITORING _header |
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103 | CPU_MEASURES out:loc:tr d3# $base_data/$fname/MONITORING _cpu |
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104 | CPU_MEASURES out:loc:tra d3f $base_data/$fname/MONITORING _cpu |
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105 | # |
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106 | DATA_1D_PR_NETCDF out:loc:tr pr#:prf $base_data/$fname/OUTPUT _pr nc |
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107 | DATA_1D_SP_NETCDF out:loc:tr sp#:spf $base_data/$fname/OUTPUT _sp nc |
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108 | DATA_1D_TS_NETCDF out:loc:tr ts#:tsf $base_data/$fname/OUTPUT _ts nc |
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109 | DATA_1D_PTS_NETCDF out:loc:tr pts#:ptsf $base_data/$fname/OUTPUT _pts nc |
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110 | DATA_2D_XY_NETCDF out:loc:tr xy#:xyf $base_data/$fname/OUTPUT _xy nc |
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111 | DATA_2D_XY_AV_NETCDF out:loc:tr xy#:xyf $base_data/$fname/OUTPUT _xy_av nc |
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112 | DATA_2D_XZ_NETCDF out:loc:tr xz#:xzf $base_data/$fname/OUTPUT _xz nc |
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113 | DATA_2D_XZ_AV_NETCDF out:loc:tr xz#:xzf $base_data/$fname/OUTPUT _xz_av nc |
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114 | DATA_2D_YZ_NETCDF out:loc:tr yz#:yzf $base_data/$fname/OUTPUT _yz nc |
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115 | DATA_2D_YZ_AV_NETCDF out:loc:tr yz#:yzf $base_data/$fname/OUTPUT _yz_av nc |
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116 | DATA_3D_NETCDF out:loc:tr 3d#:3df $base_data/$fname/OUTPUT _3d nc |
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117 | DATA_3D_AV_NETCDF out:loc:tr 3d#:3df $base_data/$fname/OUTPUT _3d_av nc |
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118 | DATA_MASK_01_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m01 nc |
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119 | DATA_MASK_01_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m01_av nc |
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120 | DATA_MASK_02_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m02 nc |
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121 | DATA_MASK_02_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m02_av nc |
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122 | DATA_MASK_03_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m03 nc |
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123 | DATA_MASK_03_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m03_av nc |
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124 | DATA_MASK_04_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m04 nc |
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125 | DATA_MASK_04_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m04_av nc |
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126 | DATA_MASK_05_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m05 nc |
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127 | DATA_MASK_05_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m05_av nc |
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128 | DATA_MASK_06_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m06 nc |
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129 | DATA_MASK_06_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m06_av nc |
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130 | DATA_MASK_07_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m07 nc |
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131 | DATA_MASK_07_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m07_av nc |
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132 | DATA_MASK_08_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m08 nc |
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133 | DATA_MASK_08_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m08_av nc |
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134 | DATA_MASK_09_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m09 nc |
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135 | DATA_MASK_09_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m09_av nc |
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136 | DATA_MASK_10_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m10 nc |
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137 | DATA_MASK_10_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m10_av nc |
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138 | DATA_MASK_11_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m11 nc |
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139 | DATA_MASK_11_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m11_av nc |
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140 | DATA_MASK_12_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m12 nc |
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141 | DATA_MASK_12_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m12_av nc |
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142 | DATA_MASK_13_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m13 nc |
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143 | DATA_MASK_13_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m13_av nc |
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144 | DATA_MASK_14_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m14 nc |
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145 | DATA_MASK_14_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m14_av nc |
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146 | DATA_MASK_15_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m15 nc |
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147 | DATA_MASK_15_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m15_av nc |
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148 | DATA_MASK_16_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m16 nc |
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149 | DATA_MASK_16_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m16_av nc |
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150 | DATA_MASK_17_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m17 nc |
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151 | DATA_MASK_17_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m17_av nc |
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152 | DATA_MASK_18_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m18 nc |
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153 | DATA_MASK_18_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m18_av nc |
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154 | DATA_MASK_19_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m19 nc |
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155 | DATA_MASK_19_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m19_av nc |
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156 | DATA_MASK_20_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m20 nc |
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157 | DATA_MASK_20_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m20_av nc |
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158 | DATA_PRT_NETCDF out:loc:pe prt#:prtf $base_data/$fname/OUTPUT _prt nc |
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159 | DATA_PRT_NETCDF out:loc:trpe prt#:prtf $base_data/$fname/OUTPUT _prt nc |
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160 | DATA_DVR out:loc:trpe dvr $base_data/$fname/OUTPUT _dvr |
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161 | # |
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162 | DVRP_LOG out:loc:tr dv# $base_data/$fname/MONITORING _dvrp_log |
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163 | DVRP_LOG out:loc:tra dvf $base_data/$fname/MONITORING _dvrp_log |
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164 | PARTICLE_INFO out:loc:tr pt# $base_data/$fname/MONITORING _prt_info |
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165 | PARTICLE_INFO out:loc:tra ptf $base_data/$fname/MONITORING _prt_info |
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166 | PARTICLE_DATA out:loc:flpe prt#:prtf $base_data/$fname/OUTPUT _prt_dat |
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167 | |
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