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source: palm/trunk/SCRIPTS/.mrun.config.imuk_ice2_netcdf4 @ 494

Last change on this file since 494 was 494, checked in by raasch, 15 years ago

last commit documented; configuration example file for netcdf4 added
File size: 9.1 KB
Line 
1#column 1          column 2                                   column 3
2#name of variable  value of variable (~ must not be used)     scope
3#----------------------------------------------------------------------------
4%mainprog          palm.f90
5%base_directory    $HOME/palm/current_version
6%base_data         ~/palm/current_version/JOBS
7%source_path       $base_directory/trunk/SOURCE
8%add_source_path   $base_directory/USER_CODE/$fname
9%depository_path   $base_directory/MAKE_DEPOSITORY
10%use_makefile      true
11#
12# Enter your own host below by adding another line containing in the second
13# column your hostname (as provided by the unix command "hostname") and in the
14# third column the host identifier. Depending on your operating system, the
15# first characters of the host identifier should be "lc" (Linux cluster), "ibm"
16# (IBM-AIX), or "nec" (NEC-SX), respectively.
17%host_identifier   service100  lcsgih
18%host_identifier   r1*         lcsgih
19%host_identifier   h01*        lcsgih
20%host_identifier   r2*         lcsgib
21%host_identifier   b01*        lcsgib
22%host_identifier   gallego     lcmuk
23#
24# The following blocks contain all information for compiling the PALM code
25# and for generating and running the PALM executable using MPI. Replace all
26# required paths (given in <>) by the respective paths valid on your host.
27# Please adjust compilernames, cpp-options, compiler-options etc.
28# appropriately for your own system(s), and please delete or comment out
29# blocks for unused systems.
30#
31# The following 'lcmuk parallel' block assumes PALM compilation and execution
32# on host gallego. Please note that other hosts within the IMUK linux cluster,
33# e.g. maestro or bora, may have require different settings.
34#
35#%remote_username   <replace by your IMUK username>              lcmuk parallel
36%tmp_user_catalog  /tmp                                          lcmuk parallel
37%compiler_name     mpif90                                        lcmuk parallel
38%compiler_name_ser ifort                                         lcmuk parallel
39%cpp_options       -D__mpi2:-DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf:-D__netcdf_64bit   lcmuk parallel
40%netcdf_inc        -I:/muksoft_64/packages/netcdf/3.6.2/include            lcmuk parallel
41%netcdf_lib        -L/muksoft_64/packages/netcdf/3.6.2/lib:-lnetcdf        lcmuk parallel
42%fopts             -axW:-cpp:-r8:-nbs:-convert:little_endian:-I:/muksoft_64/packages/mpich2/2.1.0.5/include     lcmuk parallel
43%lopts             -axW:-cpp:-r8:-nbs:-Vaxlib:-L:/muksoft_64/packages/mpich2/2.1.0.5/lib                    lcmuk parallel
44#%hostfile          $base_directory/.hostfile                    lcmuk parallel
45#
46%sgi_feature       ice2                                       lcsgih parallel ice2
47%modules           ifort/11.0.069:mvapich2/1.4.0-intel:phdf5:pnetcdf   lcsgih parallel ice2
48#%remote_username  <replace by your HLRN username>            lcsgih parallel
49%compiler_name     mpif90                                     lcsgih parallel ice2
50%compiler_name_ser ifort                                      lcsgih parallel ice2
51%cpp_options       -DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf:-D__netcdf4:-D__mpi2   lcsgih parallel ice2
52%netcdf_inc        -I:/sw/dataformats/pnetcdf/netcdf-4.0.1-mvapich2-intel/include:-I:/sw/dataformats/phdf5/hdf5-1.8.2-mvapich2-intel/include    lcsgih parallel ice2
53%netcdf_lib        -L/sw/dataformats/pnetcdf/netcdf-4.0.1-mvapich2-intel/lib:-lnetcdf:-lnetcdff:-L/sw/dataformats/phdf5/hdf5-1.8.2-mvapich2-intel/lib:-lhdf5:-lhdf5_hl:-lz      lcsgih parallel ice2
54%mopts             -j:4                                       lcsgih parallel ice2
55%fopts             -xSSE4.2:-O3:-cpp:-r8:-align:all:-ftz:-fno-alias:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-convert:little_endian  lcsgih parallel ice2
56%lopts             -xSSE4.2:-O3:-cpp:-r8:-align:all:-ftz:-fno-alias:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-Vaxlib                 lcsgih parallel ice2
57%memory            1500                                       lcsgih parallel ice2
58#%tmp_data_catalog  /gfs1/work/<replace by your HLRN username>/palm_restart_data      lcsgih parallel
59#%tmp_user_catalog  /gfs1/tmp/<replace by your HLRN username>                         lcsgih parallel
60#
61#
62%write_binary                true                             restart
63#
64#----------------------------------------------------------------------------
65# INPUT-commands, executed before running PALM - lines must start with "IC:"
66#----------------------------------------------------------------------------
67#IC:
68#
69#----------------------------------------------------------------------------
70# ERROR-commands - executed when program terminates abnormally
71#----------------------------------------------------------------------------
72EC:[[ \$locat = execution ]]  &&  cat  RUN_CONTROL
73EC:pwd; ls -al
74#
75#----------------------------------------------------------------------------
76# OUTPUT-commands - executed when program terminates normally
77#----------------------------------------------------------------------------
78#
79# Combine 1D- and 3D-profile output (these files are not usable for plotting)
80OC:[[ -f LIST_PROFIL_1D     ]]  &&  cat  LIST_PROFIL_1D  >>  LIST_PROFILE
81OC:[[ -f LIST_PROFIL        ]]  &&  cat  LIST_PROFIL     >>  LIST_PROFILE
82#
83# Combine all particle information files
84OC:[[ -f PARTICLE_INFOS/_0000 ]]  &&  cat  PARTICLE_INFOS/* >> PARTICLE_INFO
85#
86# Collect plot data (2d/3d) into one file
87OC:combine_plot_fields.x
88#
89#----------------------------------------------------------------------------
90# List of input-files
91#----------------------------------------------------------------------------
92PARIN                    in:job        d3#      $base_data/$fname/INPUT    _p3d
93PARIN                    in:job        d3f      $base_data/$fname/INPUT    _p3df
94TOPOGRAPHY_DATA          in:locopt     d3#:d3f  $base_data/$fname/INPUT    _topo
95BININ                    in:loc:flpe   d3f      $base_data/$fname/RESTART  _d3d
96PARTICLE_RESTART_DATA_IN in:loc:flpe   prtf     $base_data/$fname/RESTART  _rprt
97DATA_1D_PR_NETCDF        in:locopt     prf      $base_data/$fname/OUTPUT   _pr     nc
98DATA_1D_SP_NETCDF        in:locopt     spf      $base_data/$fname/OUTPUT   _sp     nc
99DATA_1D_TS_NETCDF        in:locopt     tsf      $base_data/$fname/OUTPUT   _ts     nc
100DATA_1D_PTS_NETCDF       in:locopt     ptsf     $base_data/$fname/OUTPUT   _pts    nc
101DATA_2D_XY_NETCDF        in:locopt     xyf      $base_data/$fname/OUTPUT   _xy     nc
102DATA_2D_XY_AV_NETCDF     in:locopt     xyf      $base_data/$fname/OUTPUT   _xy_av  nc
103DATA_2D_XZ_NETCDF        in:locopt     xzf      $base_data/$fname/OUTPUT   _xz     nc
104DATA_2D_YZ_NETCDF        in:locopt     yzf      $base_data/$fname/OUTPUT   _yz     nc
105DATA_3D_NETCDF           in:locopt     3df      $base_data/$fname/OUTPUT   _3d     nc
106DATA_PRT_NETCDF          in:locopt:pe  prtf     $base_data/$fname/OUTPUT   _prt
107#
108#----------------------------------------------------------------------------
109# List of output-files
110#----------------------------------------------------------------------------
111BINOUT                    out:loc:flpe restart   $base_data/$fname/RESTART  _d3d
112PARTICLE_RESTART_DATA_OUT out:loc:flpe prt#:prtf $base_data/$fname/RESTART  _rprt
113#
114RUN_CONTROL       out:loc:tr   d3#     $base_data/$fname/MONITORING  _rc
115RUN_CONTROL       out:loc:tra  d3f     $base_data/$fname/MONITORING  _rc
116HEADER            out:loc:tr   d3#     $base_data/$fname/MONITORING  _header
117HEADER            out:loc:tra  d3f     $base_data/$fname/MONITORING  _header
118CPU_MEASURES      out:loc:tr   d3#     $base_data/$fname/MONITORING  _cpu
119CPU_MEASURES      out:loc:tra  d3f     $base_data/$fname/MONITORING  _cpu
120#
121DATA_1D_PR_NETCDF    out:loc:tr   pr#:prf   $base_data/$fname/OUTPUT  _pr     nc
122DATA_1D_SP_NETCDF    out:loc:tr   sp#:spf   $base_data/$fname/OUTPUT  _sp     nc
123DATA_1D_TS_NETCDF    out:loc:tr   ts#:tsf   $base_data/$fname/OUTPUT  _ts     nc
124DATA_1D_PTS_NETCDF   out:loc:tr   pts#:ptsf $base_data/$fname/OUTPUT  _pts    nc
125DATA_2D_XY_NETCDF    out:loc:tr   xy#:xyf   $base_data/$fname/OUTPUT  _xy     nc
126DATA_2D_XY_AV_NETCDF out:loc:tr   xy#:xyf   $base_data/$fname/OUTPUT  _xy_av  nc
127DATA_2D_XZ_NETCDF    out:loc:tr   xz#:xzf   $base_data/$fname/OUTPUT  _xz     nc
128DATA_2D_XZ_AV_NETCDF out:loc:tr   xz#:xzf   $base_data/$fname/OUTPUT  _xz_av  nc
129DATA_2D_YZ_NETCDF    out:loc:tr   yz#:yzf   $base_data/$fname/OUTPUT  _yz     nc
130DATA_2D_YZ_AV_NETCDF out:loc:tr   yz#:yzf   $base_data/$fname/OUTPUT  _yz_av  nc
131DATA_3D_NETCDF       out:loc:tr   3d#:3df   $base_data/$fname/OUTPUT  _3d     nc
132DATA_3D_AV_NETCDF    out:loc:tr   3d#:3df   $base_data/$fname/OUTPUT  _3d_av  nc
133DATA_PRT_NETCDF      out:loc:pe   prt#:prtf $base_data/$fname/OUTPUT  _prt    nc
134DATA_PRT_NETCDF      out:loc:trpe prt#:prtf $base_data/$fname/OUTPUT  _prt    nc
135DATA_DVR             out:loc:trpe dvr       $base_data/$fname/OUTPUT  _dvr
136#
137DVRP_LOG          out:loc:tr   dv#       $base_data/$fname/MONITORING  _dvrp_log
138DVRP_LOG          out:loc:tra  dvf       $base_data/$fname/MONITORING  _dvrp_log
139PARTICLE_INFO     out:loc:tr   pt#       $base_data/$fname/MONITORING  _prt_info
140PARTICLE_INFO     out:loc:tra  ptf       $base_data/$fname/MONITORING  _prt_info
141PARTICLE_DATA     out:loc:flpe prt#:prtf $base_data/$fname/OUTPUT      _prt_dat
142
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