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source: palm/trunk/SCRIPTS/.mrun.config.imuk_ice2_netcdf4 @ 1300

Last change on this file since 1300 was 1241, checked in by heinze, 11 years ago

Nudging and large scale forcing from external file implemented
  • Property svn:keywords set to Id
File size: 9.4 KB
RevLine 
[892]1#$Id: .mrun.config.imuk_ice2_netcdf4 1241 2013-10-30 11:36:58Z heinze $
[494]2#column 1          column 2                                   column 3
3#name of variable  value of variable (~ must not be used)     scope
4#----------------------------------------------------------------------------
5%mainprog          palm.f90
6%base_directory    $HOME/palm/current_version
7%base_data         ~/palm/current_version/JOBS
8%source_path       $base_directory/trunk/SOURCE
9%add_source_path   $base_directory/USER_CODE/$fname
10%depository_path   $base_directory/MAKE_DEPOSITORY
11%use_makefile      true
12#
13# Enter your own host below by adding another line containing in the second
14# column your hostname (as provided by the unix command "hostname") and in the
15# third column the host identifier. Depending on your operating system, the
16# first characters of the host identifier should be "lc" (Linux cluster), "ibm"
17# (IBM-AIX), or "nec" (NEC-SX), respectively.
18%host_identifier   service100  lcsgih
19%host_identifier   r1*         lcsgih
20%host_identifier   h01*        lcsgih
21%host_identifier   r2*         lcsgib
22%host_identifier   b01*        lcsgib
23%host_identifier   gallego     lcmuk
24#
25# The following blocks contain all information for compiling the PALM code
26# and for generating and running the PALM executable using MPI. Replace all
27# required paths (given in <>) by the respective paths valid on your host.
28# Please adjust compilernames, cpp-options, compiler-options etc.
29# appropriately for your own system(s), and please delete or comment out
30# blocks for unused systems.
31#
32# The following 'lcmuk parallel' block assumes PALM compilation and execution
33# on host gallego. Please note that other hosts within the IMUK linux cluster,
34# e.g. maestro or bora, may have require different settings.
35#
36#%remote_username   <replace by your IMUK username>              lcmuk parallel
37%tmp_user_catalog  /tmp                                          lcmuk parallel
38%compiler_name     mpif90                                        lcmuk parallel
39%compiler_name_ser ifort                                         lcmuk parallel
[962]40%cpp_options       -cpp:-D__mpi2:-DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf   lcmuk parallel
[537]41%netcdf_inc        -I:/muksoft_64/packages/netcdf/3.6.3/include            lcmuk parallel
42%netcdf_lib        -L/muksoft_64/packages/netcdf/3.6.3/lib:-lnetcdf        lcmuk parallel
[503]43%mopts             -j:4                                          lcmuk parallel
[962]44%fopts             -axW:-r8:-nbs:-convert:little_endian:-I:/muksoft_64/packages/mpich2/2.1.0.5/include     lcmuk parallel
[1098]45%lopts             -axW:-r8:-nbs:-Vaxlib:-L:/muksoft_64/packages/mpich2/2.1.0.5/lib:-limf:-lm              lcmuk parallel
[494]46#%hostfile          $base_directory/.hostfile                    lcmuk parallel
47#
48%sgi_feature       ice2                                       lcsgih parallel ice2
[537]49%modules           intel.compiler:mvapich2:phdf5:pnetcdf      lcsgih parallel ice2
[892]50%login_init_cmd    .:/usr/share/modules/init/bash           lcsgih parallel ice2
[494]51#%remote_username  <replace by your HLRN username>            lcsgih parallel
52%compiler_name     mpif90                                     lcsgih parallel ice2
53%compiler_name_ser ifort                                      lcsgih parallel ice2
54%cpp_options       -DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf:-D__netcdf4:-D__mpi2   lcsgih parallel ice2
55%netcdf_inc        -I:/sw/dataformats/pnetcdf/netcdf-4.0.1-mvapich2-intel/include:-I:/sw/dataformats/phdf5/hdf5-1.8.2-mvapich2-intel/include    lcsgih parallel ice2
56%netcdf_lib        -L/sw/dataformats/pnetcdf/netcdf-4.0.1-mvapich2-intel/lib:-lnetcdf:-lnetcdff:-L/sw/dataformats/phdf5/hdf5-1.8.2-mvapich2-intel/lib:-lhdf5:-lhdf5_hl:-lz      lcsgih parallel ice2
57%mopts             -j:4                                       lcsgih parallel ice2
[555]58%fopts             -xSSE4.2:-fp-model:precise:-O3:-cpp:-r8:-align:all:-ftz:-fno-alias:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-convert:little_endian  lcsgih parallel ice2
[1098]59%lopts             -xSSE4.2:-fp-model:precise:-O3:-cpp:-r8:-align:all:-ftz:-fno-alias:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-Vaxlib:-limf:-lm       lcsgih parallel ice2
[494]60%memory            1500                                       lcsgih parallel ice2
[555]61#%tmp_data_catalog  /gfs2/work/<replace by your HLRN username>/palm_restart_data      lcsgih parallel
62#%tmp_user_catalog  /gfs2/tmp/<replace by your HLRN username>                         lcsgih parallel
[494]63#
64#
65%write_binary                true                             restart
66#
67#----------------------------------------------------------------------------
68# INPUT-commands, executed before running PALM - lines must start with "IC:"
69#----------------------------------------------------------------------------
70#IC:
71#
72#----------------------------------------------------------------------------
73# ERROR-commands - executed when program terminates abnormally
74#----------------------------------------------------------------------------
75EC:[[ \$locat = execution ]]  &&  cat  RUN_CONTROL
76EC:pwd; ls -al
77#
78#----------------------------------------------------------------------------
79# OUTPUT-commands - executed when program terminates normally
80#----------------------------------------------------------------------------
81#
82# Combine 1D- and 3D-profile output (these files are not usable for plotting)
83OC:[[ -f LIST_PROFIL_1D     ]]  &&  cat  LIST_PROFIL_1D  >>  LIST_PROFILE
84OC:[[ -f LIST_PROFIL        ]]  &&  cat  LIST_PROFIL     >>  LIST_PROFILE
85#
86# Combine all particle information files
87OC:[[ -f PARTICLE_INFOS/_0000 ]]  &&  cat  PARTICLE_INFOS/* >> PARTICLE_INFO
88#
89#----------------------------------------------------------------------------
90# List of input-files
91#----------------------------------------------------------------------------
92PARIN                    in:job        d3#      $base_data/$fname/INPUT    _p3d
93PARIN                    in:job        d3f      $base_data/$fname/INPUT    _p3df
94TOPOGRAPHY_DATA          in:locopt     d3#:d3f  $base_data/$fname/INPUT    _topo
[1241]95NUDGING_DATA             in:locopt     d3#:d3f  $base_data/$fname/INPUT    _nudge
96LSF_DATA                 in:locopt     d3#:d3f  $base_data/$fname/INPUT    _lsf
[494]97BININ                    in:loc:flpe   d3f      $base_data/$fname/RESTART  _d3d
98PARTICLE_RESTART_DATA_IN in:loc:flpe   prtf     $base_data/$fname/RESTART  _rprt
99DATA_1D_PR_NETCDF        in:locopt     prf      $base_data/$fname/OUTPUT   _pr     nc
100DATA_1D_SP_NETCDF        in:locopt     spf      $base_data/$fname/OUTPUT   _sp     nc
101DATA_1D_TS_NETCDF        in:locopt     tsf      $base_data/$fname/OUTPUT   _ts     nc
102DATA_1D_PTS_NETCDF       in:locopt     ptsf     $base_data/$fname/OUTPUT   _pts    nc
103DATA_2D_XY_NETCDF        in:locopt     xyf      $base_data/$fname/OUTPUT   _xy     nc
104DATA_2D_XY_AV_NETCDF     in:locopt     xyf      $base_data/$fname/OUTPUT   _xy_av  nc
105DATA_2D_XZ_NETCDF        in:locopt     xzf      $base_data/$fname/OUTPUT   _xz     nc
106DATA_2D_YZ_NETCDF        in:locopt     yzf      $base_data/$fname/OUTPUT   _yz     nc
107DATA_3D_NETCDF           in:locopt     3df      $base_data/$fname/OUTPUT   _3d     nc
108DATA_PRT_NETCDF          in:locopt:pe  prtf     $base_data/$fname/OUTPUT   _prt
109#
110#----------------------------------------------------------------------------
111# List of output-files
112#----------------------------------------------------------------------------
113BINOUT                    out:loc:flpe restart   $base_data/$fname/RESTART  _d3d
114PARTICLE_RESTART_DATA_OUT out:loc:flpe prt#:prtf $base_data/$fname/RESTART  _rprt
115#
116RUN_CONTROL       out:loc:tr   d3#     $base_data/$fname/MONITORING  _rc
117RUN_CONTROL       out:loc:tra  d3f     $base_data/$fname/MONITORING  _rc
118HEADER            out:loc:tr   d3#     $base_data/$fname/MONITORING  _header
119HEADER            out:loc:tra  d3f     $base_data/$fname/MONITORING  _header
120CPU_MEASURES      out:loc:tr   d3#     $base_data/$fname/MONITORING  _cpu
121CPU_MEASURES      out:loc:tra  d3f     $base_data/$fname/MONITORING  _cpu
122#
123DATA_1D_PR_NETCDF    out:loc:tr   pr#:prf   $base_data/$fname/OUTPUT  _pr     nc
124DATA_1D_SP_NETCDF    out:loc:tr   sp#:spf   $base_data/$fname/OUTPUT  _sp     nc
125DATA_1D_TS_NETCDF    out:loc:tr   ts#:tsf   $base_data/$fname/OUTPUT  _ts     nc
126DATA_1D_PTS_NETCDF   out:loc:tr   pts#:ptsf $base_data/$fname/OUTPUT  _pts    nc
127DATA_2D_XY_NETCDF    out:loc:tr   xy#:xyf   $base_data/$fname/OUTPUT  _xy     nc
128DATA_2D_XY_AV_NETCDF out:loc:tr   xy#:xyf   $base_data/$fname/OUTPUT  _xy_av  nc
129DATA_2D_XZ_NETCDF    out:loc:tr   xz#:xzf   $base_data/$fname/OUTPUT  _xz     nc
130DATA_2D_XZ_AV_NETCDF out:loc:tr   xz#:xzf   $base_data/$fname/OUTPUT  _xz_av  nc
131DATA_2D_YZ_NETCDF    out:loc:tr   yz#:yzf   $base_data/$fname/OUTPUT  _yz     nc
132DATA_2D_YZ_AV_NETCDF out:loc:tr   yz#:yzf   $base_data/$fname/OUTPUT  _yz_av  nc
133DATA_3D_NETCDF       out:loc:tr   3d#:3df   $base_data/$fname/OUTPUT  _3d     nc
134DATA_3D_AV_NETCDF    out:loc:tr   3d#:3df   $base_data/$fname/OUTPUT  _3d_av  nc
135DATA_PRT_NETCDF      out:loc:pe   prt#:prtf $base_data/$fname/OUTPUT  _prt    nc
136DATA_PRT_NETCDF      out:loc:trpe prt#:prtf $base_data/$fname/OUTPUT  _prt    nc
137DATA_DVR             out:loc:trpe dvr       $base_data/$fname/OUTPUT  _dvr
138#
139DVRP_LOG          out:loc:tr   dv#       $base_data/$fname/MONITORING  _dvrp_log
140DVRP_LOG          out:loc:tra  dvf       $base_data/$fname/MONITORING  _dvrp_log
141PARTICLE_INFO     out:loc:tr   pt#       $base_data/$fname/MONITORING  _prt_info
142PARTICLE_INFO     out:loc:tra  ptf       $base_data/$fname/MONITORING  _prt_info
143PARTICLE_DATA     out:loc:flpe prt#:prtf $base_data/$fname/OUTPUT      _prt_dat
[892]144# A BLANK LINE MUST FOLLOW
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