[892] | 1 | #$Id: .mrun.config.imuk_hlrn 962 2012-07-25 07:43:20Z raasch $ |
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[346] | 2 | #column 1 column 2 column 3 |
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| 3 | #name of variable value of variable (~ must not be used) scope |
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| 4 | #---------------------------------------------------------------------------- |
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| 5 | %mainprog palm.f90 |
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[751] | 6 | %base_directory $HOME/palm/current_version |
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| 7 | %base_data ~/palm/current_version/JOBS |
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[346] | 8 | %source_path $base_directory/trunk/SOURCE |
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| 9 | %add_source_path $base_directory/USER_CODE/$fname |
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| 10 | %depository_path $base_directory/MAKE_DEPOSITORY |
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| 11 | %use_makefile true |
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| 12 | # |
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| 13 | # Enter your own host below by adding another line containing in the second |
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| 14 | # column your hostname (as provided by the unix command "hostname") and in the |
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| 15 | # third column the host identifier. Depending on your operating system, the |
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| 16 | # first characters of the host identifier should be "lc" (Linux cluster), "ibm" |
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| 17 | # (IBM-AIX), or "nec" (NEC-SX), respectively. |
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| 18 | %host_identifier service100 lcsgih |
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| 19 | %host_identifier r1* lcsgih |
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| 20 | %host_identifier h01* lcsgih |
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| 21 | %host_identifier r2* lcsgib |
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| 22 | %host_identifier b01* lcsgib |
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[733] | 23 | %host_identifier inferno lcmuk |
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[346] | 24 | # |
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| 25 | # The following blocks contain all information for compiling the PALM code |
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| 26 | # and for generating and running the PALM executable using MPI. Replace all |
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| 27 | # required paths (given in <>) by the respective paths valid on your host. |
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[750] | 28 | # Please adjust compilernames, cpp-options, compiler-options etc. |
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[346] | 29 | # appropriately for your own system(s), and please delete or comment out |
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| 30 | # blocks for unused systems. |
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| 31 | # |
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| 32 | # The following 'lcmuk parallel' block assumes PALM compilation and execution |
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[733] | 33 | # on host inferno. Please note that other hosts within the IMUK linux cluster, |
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| 34 | # e.g. bora, may require different settings. |
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[346] | 35 | # |
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[750] | 36 | #%remote_username <replace by your IMUK username> lcmuk parallel |
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| 37 | #%tmp_user_catalog /home/<replace by your IMUK username>/palm/tmp/ lcmuk parallel |
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[346] | 38 | %compiler_name mpif90 lcmuk parallel |
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| 39 | %compiler_name_ser ifort lcmuk parallel |
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[962] | 40 | %cpp_options -cpp:-DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf lcmuk parallel |
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[733] | 41 | %netcdf_inc -I:/muksoft/packages/netcdf/3.6.3/include lcmuk parallel |
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| 42 | %netcdf_lib -L/muksoft/packages/netcdf/3.6.3/lib:-lnetcdf lcmuk parallel |
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[503] | 43 | %mopts -j:4 lcmuk parallel |
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[962] | 44 | %fopts -openmp:-fpe0:-O3:-r8:-fp-model:precise:-ftz:-fno-alias:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-diag-disable:8290,8291 lcmuk parallel |
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| 45 | %lopts -openmp:-fpe0:-O3:-r8:-fp-model:precise:-ftz:-fno-alias:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-diag-disable:8290,8291 lcmuk parallel |
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[346] | 46 | #%hostfile $base_directory/.hostfile lcmuk parallel |
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| 47 | # |
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| 48 | # |
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[753] | 49 | %sgi_feature ice2 lcsgih parallel |
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| 50 | %modules intel.compiler/11.1.072:mpt:phdf5/1.8.5-mpt-intel-11.1:pnetcdf/4.1.1-mpt-intel-11.1 lcsgih parallel |
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[892] | 51 | %login_init_cmd .:/usr/share/modules/init/bash lcsgih parallel |
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[753] | 52 | #%remote_username <replace by your HLRN username> lcsgih parallel |
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| 53 | %compiler_name ifort lcsgih parallel |
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| 54 | %compiler_name_ser ifort lcsgih parallel |
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| 55 | %cpp_options -DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf:-D__netcdf4:-D__mpi2 lcsgih parallel |
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| 56 | %netcdf_inc -I:/sw/dataformats/pnetcdf/netcdf-4.1.1-mpt-intel-11.1/include:-I:/sw/dataformats/phdf5/hdf5-1.8.5-mpt-intel-11.1/include lcsgih parallel |
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| 57 | %netcdf_lib -L/sw/dataformats/pnetcdf/netcdf-4.1.1-mpt-intel-11.1/lib:-lnetcdf:-lnetcdff:-L/sw/dataformats/phdf5/hdf5-1.8.5-mpt-intel-11.1/lib:-lhdf5:-lhdf5_hl:-lz lcsgih parallel |
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| 58 | %mopts -j:4 lcsgih parallel |
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| 59 | %fopts -openmp:-xS:-fpe0:-O3:-cpp:-r8:-fp-model:precise:-align:all:-ftz:-fno-alias:-no-scalar-rep:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-convert:little_endian lcsgih parallel |
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| 60 | %lopts -openmp:-xS:-fpe0:-O3:-cpp:-r8:-fp-model:precise:-align:all:-ftz:-fno-alias:-no-scalar-rep:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-Vaxlib:-lmpi lcsgih parallel |
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| 61 | %memory 1500 lcsgih parallel |
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| 62 | #%tmp_data_catalog /gfs2/work/<replace by your HLRN username>/palm_restart_data lcsgih parallel |
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| 63 | #%tmp_user_catalog /gfs2/tmp/<replace by your HLRN username> lcsgih parallel |
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[346] | 64 | # |
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| 65 | # |
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[754] | 66 | # |
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| 67 | %sgi_feature ice2 lcsgih parallel trace |
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| 68 | %modules intel.compiler/11.1.072:mpt:phdf5/1.8.5-mpt-intel-11.1:pnetcdf/4.1.1-mpt-intel-11.1 lcsgih parallel trace |
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[892] | 69 | %login_init_cmd .:/usr/share/modules/init/bash lcsgih parallel trace |
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[754] | 70 | #%remote_username <replace by your HLRN username> lcsgih parallel trace |
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| 71 | %compiler_name ifort lcsgih parallel trace |
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| 72 | %compiler_name_ser ifort lcsgih parallel trace |
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| 73 | %cpp_options -DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf:-D__netcdf4:-D__mpi2 lcsgih parallel trace |
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| 74 | %netcdf_inc -I:/sw/dataformats/pnetcdf/netcdf-4.1.1-mpt-intel-11.1/include:-I:/sw/dataformats/phdf5/hdf5-1.8.5-mpt-intel-11.1/include lcsgih parallel trace |
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| 75 | %netcdf_lib -L/sw/dataformats/pnetcdf/netcdf-4.1.1-mpt-intel-11.1/lib:-lnetcdf:-lnetcdff:-L/sw/dataformats/phdf5/hdf5-1.8.5-mpt-intel-11.1/lib:-lhdf5:-lhdf5_hl:-lz lcsgih parallel trace |
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| 76 | %mopts -j:4 lcsgih parallel trace |
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| 77 | %fopts -openmp:-override-limits:-C:-ftrapuv:-xS:-debug:extended:-check:nooutput_conversion:-O0:-fpe0:-g:-traceback:-cpp:-r8:-fp-model:precise:-align:all:-ftz:-fno-alias:-no-scalar-rep:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-convert:little_endian lcsgih parallel trace |
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| 78 | %lopts -openmp:-C:-ftrapuv:-xS:-debug:extended:-check:nooutput_conversion:-O0:-fpe0:-g:-traceback:-cpp:-r8:-fp-model:precise:-align:all:-ftz:-fno-alias:-no-scalar-rep:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-Vaxlib:-lmpi lcsgih parallel trace |
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| 79 | %memory 1500 lcsgih parallel trace |
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| 80 | #%tmp_data_catalog /gfs2/work/<replace by your HLRN username>/palm_restart_data lcsgih parallel trace |
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| 81 | #%tmp_user_catalog /gfs2/tmp/<replace by your HLRN username> lcsgih parallel trace |
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| 82 | # |
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| 83 | # |
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[892] | 84 | # |
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| 85 | %sgi_feature ice2 lcsgib parallel |
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| 86 | %modules intel.compiler/11.1.072:mpt:phdf5/1.8.5-mpt-intel-11.1:pnetcdf/4.1.1-mpt-intel-11.1 lcsgib parallel |
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| 87 | %login_init_cmd .:/usr/share/modules/init/bash lcsgib parallel |
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| 88 | #%remote_username <replace by your HLRN username> lcsgib parallel |
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| 89 | %compiler_name ifort lcsgib parallel |
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| 90 | %compiler_name_ser ifort lcsgib parallel |
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| 91 | %cpp_options -DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf:-D__netcdf4:-D__mpi2 lcsgib parallel |
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| 92 | %netcdf_inc -I:/sw/dataformats/pnetcdf/netcdf-4.1.1-mpt-intel-11.1/include:-I:/sw/dataformats/phdf5/hdf5-1.8.5-mpt-intel-11.1/include lcsgib parallel |
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| 93 | %netcdf_lib -L/sw/dataformats/pnetcdf/netcdf-4.1.1-mpt-intel-11.1/lib:-lnetcdf:-lnetcdff:-L/sw/dataformats/phdf5/hdf5-1.8.5-mpt-intel-11.1/lib:-lhdf5:-lhdf5_hl:-lz lcsgib parallel |
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| 94 | %mopts -j:4 lcsgib parallel |
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| 95 | %fopts -openmp:-xS:-fpe0:-O3:-cpp:-r8:-fp-model:precise:-align:all:-ftz:-fno-alias:-no-scalar-rep:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-convert:little_endian lcsgib parallel |
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| 96 | %lopts -openmp:-xS:-fpe0:-O3:-cpp:-r8:-fp-model:precise:-align:all:-ftz:-fno-alias:-no-scalar-rep:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-Vaxlib:-lmpi lcsgib parallel |
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| 97 | %memory 1500 lcsgib parallel |
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| 98 | #%tmp_data_catalog /gfs2/work/<replace by your HLRN username>/palm_restart_data lcsgib parallel |
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| 99 | #%tmp_user_catalog /gfs2/tmp/<replace by your HLRN username> lcsgib parallel |
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| 100 | # |
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| 101 | # |
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| 102 | # |
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| 103 | %sgi_feature ice2 lcsgib parallel trace |
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| 104 | %modules intel.compiler/11.1.072:mpt:phdf5/1.8.5-mpt-intel-11.1:pnetcdf/4.1.1-mpt-intel-11.1 lcsgib parallel trace |
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| 105 | %login_init_cmd .:/usr/share/modules/init/bash lcsgib parallel trace |
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| 106 | #%remote_username <replace by your HLRN username> lcsgib parallel trace |
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| 107 | %compiler_name ifort lcsgib parallel trace |
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| 108 | %compiler_name_ser ifort lcsgib parallel trace |
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| 109 | %cpp_options -DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf:-D__netcdf4:-D__mpi2 lcsgib parallel trace |
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| 110 | %netcdf_inc -I:/sw/dataformats/pnetcdf/netcdf-4.1.1-mpt-intel-11.1/include:-I:/sw/dataformats/phdf5/hdf5-1.8.5-mpt-intel-11.1/include lcsgib parallel trace |
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| 111 | %netcdf_lib -L/sw/dataformats/pnetcdf/netcdf-4.1.1-mpt-intel-11.1/lib:-lnetcdf:-lnetcdff:-L/sw/dataformats/phdf5/hdf5-1.8.5-mpt-intel-11.1/lib:-lhdf5:-lhdf5_hl:-lz lcsgib parallel trace |
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| 112 | %mopts -j:4 lcsgib parallel trace |
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| 113 | %fopts -openmp:-override-limits:-C:-ftrapuv:-xS:-debug:extended:-check:nooutput_conversion:-O0:-fpe0:-g:-traceback:-cpp:-r8:-fp-model:precise:-align:all:-ftz:-fno-alias:-no-scalar-rep:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-convert:little_endian lcsgib parallel trace |
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| 114 | %lopts -openmp:-C:-ftrapuv:-xS:-debug:extended:-check:nooutput_conversion:-O0:-fpe0:-g:-traceback:-cpp:-r8:-fp-model:precise:-align:all:-ftz:-fno-alias:-no-scalar-rep:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-Vaxlib:-lmpi lcsgib parallel trace |
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| 115 | %memory 1500 lcsgib parallel trace |
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| 116 | #%tmp_data_catalog /gfs2/work/<replace by your HLRN username>/palm_restart_data lcsgib parallel trace |
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| 117 | #%tmp_user_catalog /gfs2/tmp/<replace by your HLRN username> lcsgib parallel trace |
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| 118 | # |
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| 119 | # |
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[346] | 120 | %write_binary true restart |
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| 121 | # |
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| 122 | #---------------------------------------------------------------------------- |
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[750] | 123 | # INPUT-commands, executed before running PALM - lines must start with "IC:" |
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[346] | 124 | #---------------------------------------------------------------------------- |
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| 125 | #IC: |
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| 126 | # |
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| 127 | #---------------------------------------------------------------------------- |
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| 128 | # ERROR-commands - executed when program terminates abnormally |
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| 129 | #---------------------------------------------------------------------------- |
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| 130 | EC:[[ \$locat = execution ]] && cat RUN_CONTROL |
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| 131 | EC:pwd; ls -al |
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| 132 | # |
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| 133 | #---------------------------------------------------------------------------- |
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| 134 | # OUTPUT-commands - executed when program terminates normally |
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| 135 | #---------------------------------------------------------------------------- |
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| 136 | # |
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| 137 | # Combine 1D- and 3D-profile output (these files are not usable for plotting) |
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| 138 | OC:[[ -f LIST_PROFIL_1D ]] && cat LIST_PROFIL_1D >> LIST_PROFILE |
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| 139 | OC:[[ -f LIST_PROFIL ]] && cat LIST_PROFIL >> LIST_PROFILE |
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| 140 | # |
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| 141 | # Combine all particle information files |
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| 142 | OC:[[ -f PARTICLE_INFOS/_0000 ]] && cat PARTICLE_INFOS/* >> PARTICLE_INFO |
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| 143 | # |
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| 144 | #---------------------------------------------------------------------------- |
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| 145 | # List of input-files |
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| 146 | #---------------------------------------------------------------------------- |
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| 147 | PARIN in:job d3# $base_data/$fname/INPUT _p3d |
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| 148 | PARIN in:job d3f $base_data/$fname/INPUT _p3df |
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| 149 | TOPOGRAPHY_DATA in:locopt d3#:d3f $base_data/$fname/INPUT _topo |
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| 150 | BININ in:loc:flpe d3f $base_data/$fname/RESTART _d3d |
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| 151 | PARTICLE_RESTART_DATA_IN in:loc:flpe prtf $base_data/$fname/RESTART _rprt |
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| 152 | DATA_1D_PR_NETCDF in:locopt prf $base_data/$fname/OUTPUT _pr nc |
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| 153 | DATA_1D_SP_NETCDF in:locopt spf $base_data/$fname/OUTPUT _sp nc |
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| 154 | DATA_1D_TS_NETCDF in:locopt tsf $base_data/$fname/OUTPUT _ts nc |
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| 155 | DATA_1D_PTS_NETCDF in:locopt ptsf $base_data/$fname/OUTPUT _pts nc |
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| 156 | DATA_2D_XY_NETCDF in:locopt xyf $base_data/$fname/OUTPUT _xy nc |
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| 157 | DATA_2D_XY_AV_NETCDF in:locopt xyf $base_data/$fname/OUTPUT _xy_av nc |
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| 158 | DATA_2D_XZ_NETCDF in:locopt xzf $base_data/$fname/OUTPUT _xz nc |
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| 159 | DATA_2D_YZ_NETCDF in:locopt yzf $base_data/$fname/OUTPUT _yz nc |
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| 160 | DATA_3D_NETCDF in:locopt 3df $base_data/$fname/OUTPUT _3d nc |
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| 161 | DATA_PRT_NETCDF in:locopt:pe prtf $base_data/$fname/OUTPUT _prt |
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| 162 | # |
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| 163 | #---------------------------------------------------------------------------- |
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| 164 | # List of output-files |
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| 165 | #---------------------------------------------------------------------------- |
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| 166 | BINOUT out:loc:flpe restart $base_data/$fname/RESTART _d3d |
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| 167 | PARTICLE_RESTART_DATA_OUT out:loc:flpe prt#:prtf $base_data/$fname/RESTART _rprt |
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| 168 | # |
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| 169 | RUN_CONTROL out:loc:tr d3# $base_data/$fname/MONITORING _rc |
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| 170 | RUN_CONTROL out:loc:tra d3f $base_data/$fname/MONITORING _rc |
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| 171 | HEADER out:loc:tr d3# $base_data/$fname/MONITORING _header |
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| 172 | HEADER out:loc:tra d3f $base_data/$fname/MONITORING _header |
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| 173 | CPU_MEASURES out:loc:tr d3# $base_data/$fname/MONITORING _cpu |
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| 174 | CPU_MEASURES out:loc:tra d3f $base_data/$fname/MONITORING _cpu |
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| 175 | # |
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| 176 | DATA_1D_PR_NETCDF out:loc:tr pr#:prf $base_data/$fname/OUTPUT _pr nc |
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| 177 | DATA_1D_SP_NETCDF out:loc:tr sp#:spf $base_data/$fname/OUTPUT _sp nc |
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| 178 | DATA_1D_TS_NETCDF out:loc:tr ts#:tsf $base_data/$fname/OUTPUT _ts nc |
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| 179 | DATA_1D_PTS_NETCDF out:loc:tr pts#:ptsf $base_data/$fname/OUTPUT _pts nc |
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| 180 | DATA_2D_XY_NETCDF out:loc:tr xy#:xyf $base_data/$fname/OUTPUT _xy nc |
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| 181 | DATA_2D_XY_AV_NETCDF out:loc:tr xy#:xyf $base_data/$fname/OUTPUT _xy_av nc |
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| 182 | DATA_2D_XZ_NETCDF out:loc:tr xz#:xzf $base_data/$fname/OUTPUT _xz nc |
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| 183 | DATA_2D_XZ_AV_NETCDF out:loc:tr xz#:xzf $base_data/$fname/OUTPUT _xz_av nc |
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| 184 | DATA_2D_YZ_NETCDF out:loc:tr yz#:yzf $base_data/$fname/OUTPUT _yz nc |
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| 185 | DATA_2D_YZ_AV_NETCDF out:loc:tr yz#:yzf $base_data/$fname/OUTPUT _yz_av nc |
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| 186 | DATA_3D_NETCDF out:loc:tr 3d#:3df $base_data/$fname/OUTPUT _3d nc |
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| 187 | DATA_3D_AV_NETCDF out:loc:tr 3d#:3df $base_data/$fname/OUTPUT _3d_av nc |
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| 188 | DATA_PRT_NETCDF out:loc:pe prt#:prtf $base_data/$fname/OUTPUT _prt nc |
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| 189 | DATA_PRT_NETCDF out:loc:trpe prt#:prtf $base_data/$fname/OUTPUT _prt nc |
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[750] | 190 | DATA_DVR out:loc:trpe dvr $base_data/$fname/OUTPUT _dvr |
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[346] | 191 | # |
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| 192 | DVRP_LOG out:loc:tr dv# $base_data/$fname/MONITORING _dvrp_log |
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| 193 | DVRP_LOG out:loc:tra dvf $base_data/$fname/MONITORING _dvrp_log |
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| 194 | PARTICLE_INFO out:loc:tr pt# $base_data/$fname/MONITORING _prt_info |
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| 195 | PARTICLE_INFO out:loc:tra ptf $base_data/$fname/MONITORING _prt_info |
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| 196 | PARTICLE_DATA out:loc:flpe prt#:prtf $base_data/$fname/OUTPUT _prt_dat |
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[892] | 197 | # A BLANK LINE MUST FOLLOW |
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