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source: palm/trunk/SCRIPTS/.mrun.config.idefix @ 2249

Last change on this file since 2249 was 2236, checked in by suehring, 7 years ago

Add NetCDF input file for topography
  • Property svn:keywords set to Id
File size: 12.2 KB
RevLine 
[2202]1#$Id: .mrun.config.idefix 2236 2017-05-31 10:26:34Z sward $
2#column 1          column 2                                   column 3
3#name of variable  value of variable (~ must not be used)     scope
4#----------------------------------------------------------------------------
5%mainprog          palm.f90
6%base_directory    $HOME/palm/current_version
7%base_data         $base_directory/JOBS
8%input_path        $base_directory/JOBS/$fname/INPUT
9%output_path       $base_directory/JOBS/$fname/OUTPUT
10%monitoring_path   $base_directory/JOBS/$fname/MONITORING
11%source_path       $base_directory/trunk/SOURCE
12%add_source_path   $base_directory/USER_CODE/$fname
13%tmp_user_catalog  $base_directory/TEMPO
14%tmp_data_catalog  $base_directory/RESTART_DATA
15%depository_path   $base_directory/MAKE_DEPOSITORY
16%use_makefile      true
17#
18# Enter your own host below by adding another line containing in the second
19# column your hostname (as provided by the unix command "hostname") and in the
20# third column the host identifier. Depending on your operating system, the
21# first characters of the host identifier should be "lc" (Linux cluster), "ibm"
22# (IBM-AIX), or "nec" (NEC-SX), respectively.
23%host_identifier   idefix*        lcidefix
24
25
26#IDEFIX normal mode
27%remote_username   <replace_by_your_IDEFIX_username>                            lcidefix parallel
28%compiler_name     mpif90                                                       lcidefix parallel
29%compiler_name_ser ifort                                                        lcidefix parallel
30%cpp_options       -cpp:-DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf:-D__netcdf4:-D__netcdf4_parallel:-D__fftw:-D__intel_compiler            lcidefix parallel
[2221]31%netcdf_inc        -I/opt/netcdf4_hdf5parallel/4411c_443f/intel/include         lcidefix parallel
32%netcdf_lib        -L/opt/netcdf4_hdf5parallel/4411c_443f/intel/lib:-L/opt/hdf5-parallel/1.10.0-patch/intel/lib:-lnetcdf:-lnetcdff        lcidefix parallel
33%fftw_inc          -I:/opt/fftw/3.3.6-pl1/mvapich2-intel/include                lcidefix parallel
34%fftw_lib          -L/opt/fftw/3.3.6-pl1/mvapich2-intel/lib:-lfftw3             lcidefix parallel
[2202]35%mopts             -j:4                                                         lcidefix parallel
36%fopts             -fpe0:-O3:-cpp:-fp-model:source:-ftz:-fno-alias:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-diag-disable:8290,8291            lcidefix parallel
37%lopts             -fpe0:-O3:-cpp:-fp-model:source:-ftz:-fno-alias:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-diag-disable:8290,829             lcidefix parallel
[2221]38%modules           intel-compiler/2017.1.132:mvapich2/2.2/intel:fftw/3.3.6-pl1/mvapich2-intel:hdf5-parallel/1.10.0-patch/intel:netcdf4_hdf5parallel/4411c_443f/intel        lcidefix parallel
[2202]39
40#IDEFIX trace/debug mode
41%remote_username   <replace_by_your_IDEFIX_username>                            lcidefix parallel trace
42%compiler_name     mpif90                                                       lcidefix parallel trace
43%compiler_name_ser ifort                                                        lcidefix parallel trace
44%cpp_options       -cpp:-DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf:-D__netcdf4:-D__netcdf4_parallel:-D__fftw:-D__intel_compiler            lcidefix parallel trace
[2221]45%netcdf_inc        -I/opt/netcdf4_hdf5parallel/4411c_443f/intel/include         lcidefix parallel trace
46%netcdf_lib        -L/opt/netcdf4_hdf5parallel/4411c_443f/intel/lib:-L/opt/hdf5-parallel/1.10.0-patch/intel/lib:-lnetcdf:-lnetcdff        lcidefix parallel trace
47%fftw_inc          -I:/opt/fftw/3.3.6-pl1/mvapich2-intel/include                lcidefix parallel trace
48%fftw_lib          -L/opt/fftw/3.3.6-pl1/mvapich2-intel/lib:-lfftw3             lcidefix parallel trace
[2202]49%mopts             -j:4                                                         lcidefix parallel trace
50%fopts             -fpe0:-C:-check:nooutput_conversion:-debug:-traceback:-g:-gen-interfaces:-warn:interfaces:-w:-xT:-O0:-ftz:-fno-alias:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-convert:little_endian:-diag-disable:8290,8291            lcidefix parallel trace
51%lopts             -fpe0:-C:-check:nooutput_conversion:-debug:-traceback:-g:-gen-interfaces:-warn:interfaces:-w:-xT:-O0:-ftz:-fno-alias:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-limf:-lm:-Vaxlib            lcidefix parallel trace
[2221]52%modules           intel-compiler/2017.1.132:mvapich2/2.2/intel:fftw/3.3.6-pl1/mvapich2-intel:hdf5-parallel/1.10.0-patch/intel:netcdf4_hdf5parallel/4411c_443f/intel        lcidefix parallel trace
[2202]53
54#       
55%write_binary        true                             restart
56#
57#----------------------------------------------------------------------------
58# INPUT-commands, executed before running PALM - lines must start with "IC:"
59#----------------------------------------------------------------------------
[2221]60IC:[[ \$localhost = lcidefix ]]  &&  export MV2_ENABLE_AFFINITY=0
[2202]61IC:[[ \$localhost = lcidefix ]]  &&  export MV2_SHOW_CPU_BINDING=1
62IC:[[ \$localhost = lcidefix ]]  &&  export MV2_CPU_BINDING_POLICY=scatter
63#
64#----------------------------------------------------------------------------
65# ERROR-commands - executed when program terminates abnormally
66#----------------------------------------------------------------------------
67EC:[[ \$locat = execution ]]  &&  cat  RUN_CONTROL
68EC:pwd
69#
70#----------------------------------------------------------------------------
71# OUTPUT-commands - executed when program terminates normally
72#----------------------------------------------------------------------------
73#
74# Combine all particle information files
75OC:[[ -f PARTICLE_INFOS/_00000 ]]  &&  cat  PARTICLE_INFOS/* >> PARTICLE_INFO
76#
77#----------------------------------------------------------------------------
78# List of input-files
79#----------------------------------------------------------------------------
80BININ                    in:loc:flpe   d3f      $base_data/$fname/RESTART  _d3d
81PARTICLE_RESTART_DATA_IN in:loc:flpe   prtf     $base_data/$fname/RESTART  _rprt
82#
83#
84PARIN                    in:job        d3#      $input_path    _p3d
85PARIN                    in:job        d3f      $input_path    _p3df
86NUDGING_DATA             in:locopt     d3#:d3f  $input_path    _nudge
87LSF_DATA                 in:locopt     d3#:d3f  $input_path    _lsf
88TOPOGRAPHY_DATA          in:locopt     d3#:d3f  $input_path    _topo
[2236]89TOPOGRAPHY_DATA_NC       in:locopt     d3#:d3f  $input_path    _topo_nc
[2202]90PLANT_CANOPY_DATA_3D     in:locopt     d3#:d3f  $input_path    _canopy
91URBAN_SURFACE            in:locopt     d3#:d3f  $input_path    _urbsurf
92SURFACE_PARAMETERS       in:locopt     d3#:d3f  $input_path    _surfpar
93#
94#
95DATA_1D_FL_NETCDF        in:locopt     flf      $output_path   _fl     nc
96DATA_1D_PR_NETCDF        in:locopt     prf      $output_path   _pr     nc
97DATA_1D_SP_NETCDF        in:locopt     spf      $output_path   _sp     nc
98DATA_1D_TS_NETCDF        in:locopt     tsf      $output_path   _ts     nc
99DATA_1D_PTS_NETCDF       in:locopt     ptsf     $output_path   _pts    nc
100DATA_2D_XY_NETCDF        in:locopt     xyf      $output_path   _xy     nc
101DATA_2D_XY_AV_NETCDF     in:locopt     xyf      $output_path   _xy_av  nc
102DATA_2D_XZ_NETCDF        in:locopt     xzf      $output_path   _xz     nc
103DATA_2D_YZ_NETCDF        in:locopt     yzf      $output_path   _yz     nc
104DATA_3D_NETCDF           in:locopt     3df      $output_path   _3d     nc
105DATA_PRT_NETCDF          in:locopt:pe  prtf     $output_path   _prt
106#----------------------------------------------------------------------------
107# List of output-files
108#----------------------------------------------------------------------------
109BINOUT                    out:loc:flpe restart   $base_data/$fname/RESTART  _d3d
110PARTICLE_RESTART_DATA_OUT out:loc:flpe prt#:prtf $base_data/$fname/RESTART  _rprt
111#
112#
113RUN_CONTROL       out:loc:tr   d3#     $monitoring_path  _rc
114RUN_CONTROL       out:loc:tra  d3f     $monitoring_path  _rc
115HEADER            out:loc:tr   d3#     $monitoring_path  _header
116HEADER            out:loc:tra  d3f     $monitoring_path  _header
117CPU_MEASURES      out:loc:tr   d3#     $monitoring_path  _cpu
118CPU_MEASURES      out:loc:tra  d3f     $monitoring_path  _cpu
119#
120#
121DATA_1D_FL_NETCDF    out:loc:tr   fl#:flf   $output_path  _fl      nc
122DATA_1D_PR_NETCDF    out:loc:tr   pr#:prf   $output_path  _pr      nc
123DATA_1D_SP_NETCDF    out:loc:tr   sp#:spf   $output_path  _sp      nc
124DATA_1D_TS_NETCDF    out:loc:tr   ts#:tsf   $output_path  _ts      nc
125DATA_1D_PTS_NETCDF   out:loc:tr   pts#:ptsf $output_path  _pts     nc
126DATA_2D_XY_NETCDF    out:loc:tr   xy#:xyf   $output_path  _xy      nc
127DATA_2D_XY_AV_NETCDF out:loc:tr   xy#:xyf   $output_path  _xy_av   nc
128DATA_2D_XZ_NETCDF    out:loc:tr   xz#:xzf   $output_path  _xz      nc
129DATA_2D_XZ_AV_NETCDF out:loc:tr   xz#:xzf   $output_path  _xz_av   nc
130DATA_2D_YZ_NETCDF    out:loc:tr   yz#:yzf   $output_path  _yz      nc
131DATA_2D_YZ_AV_NETCDF out:loc:tr   yz#:yzf   $output_path  _yz_av   nc
132DATA_3D_NETCDF       out:loc:tr   3d#:3df   $output_path  _3d      nc
133DATA_3D_AV_NETCDF    out:loc:tr   3d#:3df   $output_path  _3d_av   nc
134DATA_MASK_01_NETCDF    out:loc:tr ma#:maf   $output_path  _m01     nc
135DATA_MASK_01_AV_NETCDF out:loc:tr ma#:maf   $output_path  _m01_av  nc
136DATA_MASK_02_NETCDF    out:loc:tr ma#:maf   $output_path  _m02     nc
137DATA_MASK_02_AV_NETCDF out:loc:tr ma#:maf   $output_path  _m02_av  nc
138DATA_MASK_03_NETCDF    out:loc:tr ma#:maf   $output_path  _m03     nc
139DATA_MASK_03_AV_NETCDF out:loc:tr ma#:maf   $output_path  _m03_av  nc
140DATA_MASK_04_NETCDF    out:loc:tr ma#:maf   $output_path  _m04     nc
141DATA_MASK_04_AV_NETCDF out:loc:tr ma#:maf   $output_path  _m04_av  nc
142DATA_MASK_05_NETCDF    out:loc:tr ma#:maf   $output_path  _m05     nc
143DATA_MASK_05_AV_NETCDF out:loc:tr ma#:maf   $output_path  _m05_av  nc
144DATA_MASK_06_NETCDF    out:loc:tr ma#:maf   $output_path  _m06     nc
145DATA_MASK_06_AV_NETCDF out:loc:tr ma#:maf   $output_path  _m06_av  nc
146DATA_MASK_07_NETCDF    out:loc:tr ma#:maf   $output_path  _m07     nc
147DATA_MASK_07_AV_NETCDF out:loc:tr ma#:maf   $output_path  _m07_av  nc
148DATA_MASK_08_NETCDF    out:loc:tr ma#:maf   $output_path  _m08     nc
149DATA_MASK_08_AV_NETCDF out:loc:tr ma#:maf   $output_path  _m08_av  nc
150DATA_MASK_09_NETCDF    out:loc:tr ma#:maf   $output_path  _m09     nc
151DATA_MASK_09_AV_NETCDF out:loc:tr ma#:maf   $output_path  _m09_av  nc
152DATA_MASK_10_NETCDF    out:loc:tr ma#:maf   $output_path  _m10     nc
153DATA_MASK_10_AV_NETCDF out:loc:tr ma#:maf   $output_path  _m10_av  nc
154DATA_MASK_11_NETCDF    out:loc:tr ma#:maf   $output_path  _m11     nc
155DATA_MASK_11_AV_NETCDF out:loc:tr ma#:maf   $output_path  _m11_av  nc
156DATA_MASK_12_NETCDF    out:loc:tr ma#:maf   $output_path  _m12     nc
157DATA_MASK_12_AV_NETCDF out:loc:tr ma#:maf   $output_path  _m12_av  nc
158DATA_MASK_13_NETCDF    out:loc:tr ma#:maf   $output_path  _m13     nc
159DATA_MASK_13_AV_NETCDF out:loc:tr ma#:maf   $output_path  _m13_av  nc
160DATA_MASK_14_NETCDF    out:loc:tr ma#:maf   $output_path  _m14     nc
161DATA_MASK_14_AV_NETCDF out:loc:tr ma#:maf   $output_path  _m14_av  nc
162DATA_MASK_15_NETCDF    out:loc:tr ma#:maf   $output_path  _m15     nc
163DATA_MASK_15_AV_NETCDF out:loc:tr ma#:maf   $output_path  _m15_av  nc
164DATA_MASK_16_NETCDF    out:loc:tr ma#:maf   $output_path  _m16     nc
165DATA_MASK_16_AV_NETCDF out:loc:tr ma#:maf   $output_path  _m16_av  nc
166DATA_MASK_17_NETCDF    out:loc:tr ma#:maf   $output_path  _m17     nc
167DATA_MASK_17_AV_NETCDF out:loc:tr ma#:maf   $output_path  _m17_av  nc
168DATA_MASK_18_NETCDF    out:loc:tr ma#:maf   $output_path  _m18     nc
169DATA_MASK_18_AV_NETCDF out:loc:tr ma#:maf   $output_path  _m18_av  nc
170DATA_MASK_19_NETCDF    out:loc:tr ma#:maf   $output_path  _m19     nc
171DATA_MASK_19_AV_NETCDF out:loc:tr ma#:maf   $output_path  _m19_av  nc
172DATA_MASK_20_NETCDF    out:loc:tr ma#:maf   $output_path  _m20     nc
173DATA_MASK_20_AV_NETCDF out:loc:tr ma#:maf   $output_path  _m20_av  nc
174DATA_PRT_NETCDF      out:loc:pe   prt#:prtf $output_path  _prt     nc
175DATA_PRT_NETCDF      out:loc:trpe prt#:prtf $output_path  _prt     nc
176DATA_DVR             out:loc:trpe dvr       $output_path  _dvr
177#
178DVRP_LOG          out:loc:tr   dv#       $monitoring_path  _dvrp_log
179DVRP_LOG          out:loc:tra  dvf       $monitoring_path  _dvrp_log
180PARTICLE_INFO     out:loc:tr   pt#       $monitoring_path  _prt_info
181PARTICLE_INFO     out:loc:tra  ptf       $monitoring_path  _prt_info
182PARTICLE_DATA     out:loc:flpe prt#:prtf $output_path      _prt_dat
183# A BLANK LINE MUST FOLLOW
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