| [2202] | 1 | #$Id: .mrun.config.idefix 2236 2017-05-31 10:26:34Z maronga $ |
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| 2 | #column 1 column 2 column 3 |
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| 3 | #name of variable value of variable (~ must not be used) scope |
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| 4 | #---------------------------------------------------------------------------- |
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| 5 | %mainprog palm.f90 |
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| 6 | %base_directory $HOME/palm/current_version |
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| 7 | %base_data $base_directory/JOBS |
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| 8 | %input_path $base_directory/JOBS/$fname/INPUT |
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| 9 | %output_path $base_directory/JOBS/$fname/OUTPUT |
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| 10 | %monitoring_path $base_directory/JOBS/$fname/MONITORING |
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| 11 | %source_path $base_directory/trunk/SOURCE |
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| 12 | %add_source_path $base_directory/USER_CODE/$fname |
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| 13 | %tmp_user_catalog $base_directory/TEMPO |
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| 14 | %tmp_data_catalog $base_directory/RESTART_DATA |
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| 15 | %depository_path $base_directory/MAKE_DEPOSITORY |
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| 16 | %use_makefile true |
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| 17 | # |
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| 18 | # Enter your own host below by adding another line containing in the second |
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| 19 | # column your hostname (as provided by the unix command "hostname") and in the |
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| 20 | # third column the host identifier. Depending on your operating system, the |
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| 21 | # first characters of the host identifier should be "lc" (Linux cluster), "ibm" |
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| 22 | # (IBM-AIX), or "nec" (NEC-SX), respectively. |
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| 23 | %host_identifier idefix* lcidefix |
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| 24 | |
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| 25 | |
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| 26 | #IDEFIX normal mode |
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| 27 | %remote_username <replace_by_your_IDEFIX_username> lcidefix parallel |
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| 28 | %compiler_name mpif90 lcidefix parallel |
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| 29 | %compiler_name_ser ifort lcidefix parallel |
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| 30 | %cpp_options -cpp:-DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf:-D__netcdf4:-D__netcdf4_parallel:-D__fftw:-D__intel_compiler lcidefix parallel |
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| [2221] | 31 | %netcdf_inc -I/opt/netcdf4_hdf5parallel/4411c_443f/intel/include lcidefix parallel |
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| 32 | %netcdf_lib -L/opt/netcdf4_hdf5parallel/4411c_443f/intel/lib:-L/opt/hdf5-parallel/1.10.0-patch/intel/lib:-lnetcdf:-lnetcdff lcidefix parallel |
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| 33 | %fftw_inc -I:/opt/fftw/3.3.6-pl1/mvapich2-intel/include lcidefix parallel |
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| 34 | %fftw_lib -L/opt/fftw/3.3.6-pl1/mvapich2-intel/lib:-lfftw3 lcidefix parallel |
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| [2202] | 35 | %mopts -j:4 lcidefix parallel |
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| 36 | %fopts -fpe0:-O3:-cpp:-fp-model:source:-ftz:-fno-alias:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-diag-disable:8290,8291 lcidefix parallel |
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| 37 | %lopts -fpe0:-O3:-cpp:-fp-model:source:-ftz:-fno-alias:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-diag-disable:8290,829 lcidefix parallel |
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| [2221] | 38 | %modules intel-compiler/2017.1.132:mvapich2/2.2/intel:fftw/3.3.6-pl1/mvapich2-intel:hdf5-parallel/1.10.0-patch/intel:netcdf4_hdf5parallel/4411c_443f/intel lcidefix parallel |
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| [2202] | 39 | |
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| 40 | #IDEFIX trace/debug mode |
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| 41 | %remote_username <replace_by_your_IDEFIX_username> lcidefix parallel trace |
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| 42 | %compiler_name mpif90 lcidefix parallel trace |
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| 43 | %compiler_name_ser ifort lcidefix parallel trace |
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| 44 | %cpp_options -cpp:-DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf:-D__netcdf4:-D__netcdf4_parallel:-D__fftw:-D__intel_compiler lcidefix parallel trace |
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| [2221] | 45 | %netcdf_inc -I/opt/netcdf4_hdf5parallel/4411c_443f/intel/include lcidefix parallel trace |
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| 46 | %netcdf_lib -L/opt/netcdf4_hdf5parallel/4411c_443f/intel/lib:-L/opt/hdf5-parallel/1.10.0-patch/intel/lib:-lnetcdf:-lnetcdff lcidefix parallel trace |
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| 47 | %fftw_inc -I:/opt/fftw/3.3.6-pl1/mvapich2-intel/include lcidefix parallel trace |
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| 48 | %fftw_lib -L/opt/fftw/3.3.6-pl1/mvapich2-intel/lib:-lfftw3 lcidefix parallel trace |
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| [2202] | 49 | %mopts -j:4 lcidefix parallel trace |
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| 50 | %fopts -fpe0:-C:-check:nooutput_conversion:-debug:-traceback:-g:-gen-interfaces:-warn:interfaces:-w:-xT:-O0:-ftz:-fno-alias:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-convert:little_endian:-diag-disable:8290,8291 lcidefix parallel trace |
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| 51 | %lopts -fpe0:-C:-check:nooutput_conversion:-debug:-traceback:-g:-gen-interfaces:-warn:interfaces:-w:-xT:-O0:-ftz:-fno-alias:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-limf:-lm:-Vaxlib lcidefix parallel trace |
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| [2221] | 52 | %modules intel-compiler/2017.1.132:mvapich2/2.2/intel:fftw/3.3.6-pl1/mvapich2-intel:hdf5-parallel/1.10.0-patch/intel:netcdf4_hdf5parallel/4411c_443f/intel lcidefix parallel trace |
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| [2202] | 53 | |
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| 54 | # |
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| 55 | %write_binary true restart |
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| 56 | # |
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| 57 | #---------------------------------------------------------------------------- |
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| 58 | # INPUT-commands, executed before running PALM - lines must start with "IC:" |
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| 59 | #---------------------------------------------------------------------------- |
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| [2221] | 60 | IC:[[ \$localhost = lcidefix ]] && export MV2_ENABLE_AFFINITY=0 |
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| [2202] | 61 | IC:[[ \$localhost = lcidefix ]] && export MV2_SHOW_CPU_BINDING=1 |
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| 62 | IC:[[ \$localhost = lcidefix ]] && export MV2_CPU_BINDING_POLICY=scatter |
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| 63 | # |
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| 64 | #---------------------------------------------------------------------------- |
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| 65 | # ERROR-commands - executed when program terminates abnormally |
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| 66 | #---------------------------------------------------------------------------- |
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| 67 | EC:[[ \$locat = execution ]] && cat RUN_CONTROL |
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| 68 | EC:pwd |
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| 69 | # |
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| 70 | #---------------------------------------------------------------------------- |
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| 71 | # OUTPUT-commands - executed when program terminates normally |
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| 72 | #---------------------------------------------------------------------------- |
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| 73 | # |
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| 74 | # Combine all particle information files |
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| 75 | OC:[[ -f PARTICLE_INFOS/_00000 ]] && cat PARTICLE_INFOS/* >> PARTICLE_INFO |
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| 76 | # |
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| 77 | #---------------------------------------------------------------------------- |
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| 78 | # List of input-files |
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| 79 | #---------------------------------------------------------------------------- |
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| 80 | BININ in:loc:flpe d3f $base_data/$fname/RESTART _d3d |
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| 81 | PARTICLE_RESTART_DATA_IN in:loc:flpe prtf $base_data/$fname/RESTART _rprt |
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| 82 | # |
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| 83 | # |
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| 84 | PARIN in:job d3# $input_path _p3d |
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| 85 | PARIN in:job d3f $input_path _p3df |
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| 86 | NUDGING_DATA in:locopt d3#:d3f $input_path _nudge |
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| 87 | LSF_DATA in:locopt d3#:d3f $input_path _lsf |
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| 88 | TOPOGRAPHY_DATA in:locopt d3#:d3f $input_path _topo |
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| [2236] | 89 | TOPOGRAPHY_DATA_NC in:locopt d3#:d3f $input_path _topo_nc |
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| [2202] | 90 | PLANT_CANOPY_DATA_3D in:locopt d3#:d3f $input_path _canopy |
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| 91 | URBAN_SURFACE in:locopt d3#:d3f $input_path _urbsurf |
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| 92 | SURFACE_PARAMETERS in:locopt d3#:d3f $input_path _surfpar |
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| 93 | # |
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| 94 | # |
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| 95 | DATA_1D_FL_NETCDF in:locopt flf $output_path _fl nc |
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| 96 | DATA_1D_PR_NETCDF in:locopt prf $output_path _pr nc |
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| 97 | DATA_1D_SP_NETCDF in:locopt spf $output_path _sp nc |
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| 98 | DATA_1D_TS_NETCDF in:locopt tsf $output_path _ts nc |
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| 99 | DATA_1D_PTS_NETCDF in:locopt ptsf $output_path _pts nc |
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| 100 | DATA_2D_XY_NETCDF in:locopt xyf $output_path _xy nc |
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| 101 | DATA_2D_XY_AV_NETCDF in:locopt xyf $output_path _xy_av nc |
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| 102 | DATA_2D_XZ_NETCDF in:locopt xzf $output_path _xz nc |
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| 103 | DATA_2D_YZ_NETCDF in:locopt yzf $output_path _yz nc |
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| 104 | DATA_3D_NETCDF in:locopt 3df $output_path _3d nc |
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| 105 | DATA_PRT_NETCDF in:locopt:pe prtf $output_path _prt |
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| 106 | #---------------------------------------------------------------------------- |
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| 107 | # List of output-files |
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| 108 | #---------------------------------------------------------------------------- |
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| 109 | BINOUT out:loc:flpe restart $base_data/$fname/RESTART _d3d |
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| 110 | PARTICLE_RESTART_DATA_OUT out:loc:flpe prt#:prtf $base_data/$fname/RESTART _rprt |
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| 111 | # |
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| 112 | # |
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| 113 | RUN_CONTROL out:loc:tr d3# $monitoring_path _rc |
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| 114 | RUN_CONTROL out:loc:tra d3f $monitoring_path _rc |
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| 115 | HEADER out:loc:tr d3# $monitoring_path _header |
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| 116 | HEADER out:loc:tra d3f $monitoring_path _header |
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| 117 | CPU_MEASURES out:loc:tr d3# $monitoring_path _cpu |
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| 118 | CPU_MEASURES out:loc:tra d3f $monitoring_path _cpu |
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| 119 | # |
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| 120 | # |
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| 121 | DATA_1D_FL_NETCDF out:loc:tr fl#:flf $output_path _fl nc |
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| 122 | DATA_1D_PR_NETCDF out:loc:tr pr#:prf $output_path _pr nc |
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| 123 | DATA_1D_SP_NETCDF out:loc:tr sp#:spf $output_path _sp nc |
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| 124 | DATA_1D_TS_NETCDF out:loc:tr ts#:tsf $output_path _ts nc |
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| 125 | DATA_1D_PTS_NETCDF out:loc:tr pts#:ptsf $output_path _pts nc |
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| 126 | DATA_2D_XY_NETCDF out:loc:tr xy#:xyf $output_path _xy nc |
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| 127 | DATA_2D_XY_AV_NETCDF out:loc:tr xy#:xyf $output_path _xy_av nc |
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| 128 | DATA_2D_XZ_NETCDF out:loc:tr xz#:xzf $output_path _xz nc |
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| 129 | DATA_2D_XZ_AV_NETCDF out:loc:tr xz#:xzf $output_path _xz_av nc |
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| 130 | DATA_2D_YZ_NETCDF out:loc:tr yz#:yzf $output_path _yz nc |
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| 131 | DATA_2D_YZ_AV_NETCDF out:loc:tr yz#:yzf $output_path _yz_av nc |
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| 132 | DATA_3D_NETCDF out:loc:tr 3d#:3df $output_path _3d nc |
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| 133 | DATA_3D_AV_NETCDF out:loc:tr 3d#:3df $output_path _3d_av nc |
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| 134 | DATA_MASK_01_NETCDF out:loc:tr ma#:maf $output_path _m01 nc |
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| 135 | DATA_MASK_01_AV_NETCDF out:loc:tr ma#:maf $output_path _m01_av nc |
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| 136 | DATA_MASK_02_NETCDF out:loc:tr ma#:maf $output_path _m02 nc |
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| 137 | DATA_MASK_02_AV_NETCDF out:loc:tr ma#:maf $output_path _m02_av nc |
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| 138 | DATA_MASK_03_NETCDF out:loc:tr ma#:maf $output_path _m03 nc |
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| 139 | DATA_MASK_03_AV_NETCDF out:loc:tr ma#:maf $output_path _m03_av nc |
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| 140 | DATA_MASK_04_NETCDF out:loc:tr ma#:maf $output_path _m04 nc |
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| 141 | DATA_MASK_04_AV_NETCDF out:loc:tr ma#:maf $output_path _m04_av nc |
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| 142 | DATA_MASK_05_NETCDF out:loc:tr ma#:maf $output_path _m05 nc |
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| 143 | DATA_MASK_05_AV_NETCDF out:loc:tr ma#:maf $output_path _m05_av nc |
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| 144 | DATA_MASK_06_NETCDF out:loc:tr ma#:maf $output_path _m06 nc |
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| 145 | DATA_MASK_06_AV_NETCDF out:loc:tr ma#:maf $output_path _m06_av nc |
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| 146 | DATA_MASK_07_NETCDF out:loc:tr ma#:maf $output_path _m07 nc |
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| 147 | DATA_MASK_07_AV_NETCDF out:loc:tr ma#:maf $output_path _m07_av nc |
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| 148 | DATA_MASK_08_NETCDF out:loc:tr ma#:maf $output_path _m08 nc |
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| 149 | DATA_MASK_08_AV_NETCDF out:loc:tr ma#:maf $output_path _m08_av nc |
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| 150 | DATA_MASK_09_NETCDF out:loc:tr ma#:maf $output_path _m09 nc |
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| 151 | DATA_MASK_09_AV_NETCDF out:loc:tr ma#:maf $output_path _m09_av nc |
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| 152 | DATA_MASK_10_NETCDF out:loc:tr ma#:maf $output_path _m10 nc |
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| 153 | DATA_MASK_10_AV_NETCDF out:loc:tr ma#:maf $output_path _m10_av nc |
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| 154 | DATA_MASK_11_NETCDF out:loc:tr ma#:maf $output_path _m11 nc |
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| 155 | DATA_MASK_11_AV_NETCDF out:loc:tr ma#:maf $output_path _m11_av nc |
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| 156 | DATA_MASK_12_NETCDF out:loc:tr ma#:maf $output_path _m12 nc |
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| 157 | DATA_MASK_12_AV_NETCDF out:loc:tr ma#:maf $output_path _m12_av nc |
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| 158 | DATA_MASK_13_NETCDF out:loc:tr ma#:maf $output_path _m13 nc |
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| 159 | DATA_MASK_13_AV_NETCDF out:loc:tr ma#:maf $output_path _m13_av nc |
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| 160 | DATA_MASK_14_NETCDF out:loc:tr ma#:maf $output_path _m14 nc |
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| 161 | DATA_MASK_14_AV_NETCDF out:loc:tr ma#:maf $output_path _m14_av nc |
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| 162 | DATA_MASK_15_NETCDF out:loc:tr ma#:maf $output_path _m15 nc |
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| 163 | DATA_MASK_15_AV_NETCDF out:loc:tr ma#:maf $output_path _m15_av nc |
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| 164 | DATA_MASK_16_NETCDF out:loc:tr ma#:maf $output_path _m16 nc |
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| 165 | DATA_MASK_16_AV_NETCDF out:loc:tr ma#:maf $output_path _m16_av nc |
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| 166 | DATA_MASK_17_NETCDF out:loc:tr ma#:maf $output_path _m17 nc |
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| 167 | DATA_MASK_17_AV_NETCDF out:loc:tr ma#:maf $output_path _m17_av nc |
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| 168 | DATA_MASK_18_NETCDF out:loc:tr ma#:maf $output_path _m18 nc |
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| 169 | DATA_MASK_18_AV_NETCDF out:loc:tr ma#:maf $output_path _m18_av nc |
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| 170 | DATA_MASK_19_NETCDF out:loc:tr ma#:maf $output_path _m19 nc |
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| 171 | DATA_MASK_19_AV_NETCDF out:loc:tr ma#:maf $output_path _m19_av nc |
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| 172 | DATA_MASK_20_NETCDF out:loc:tr ma#:maf $output_path _m20 nc |
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| 173 | DATA_MASK_20_AV_NETCDF out:loc:tr ma#:maf $output_path _m20_av nc |
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| 174 | DATA_PRT_NETCDF out:loc:pe prt#:prtf $output_path _prt nc |
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| 175 | DATA_PRT_NETCDF out:loc:trpe prt#:prtf $output_path _prt nc |
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| 176 | DATA_DVR out:loc:trpe dvr $output_path _dvr |
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| 177 | # |
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| 178 | DVRP_LOG out:loc:tr dv# $monitoring_path _dvrp_log |
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| 179 | DVRP_LOG out:loc:tra dvf $monitoring_path _dvrp_log |
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| 180 | PARTICLE_INFO out:loc:tr pt# $monitoring_path _prt_info |
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| 181 | PARTICLE_INFO out:loc:tra ptf $monitoring_path _prt_info |
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| 182 | PARTICLE_DATA out:loc:flpe prt#:prtf $output_path _prt_dat |
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| 183 | # A BLANK LINE MUST FOLLOW |
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