Home


About us
PALM
PALM-4U
Installation
Release notes
Documentation
Getting Help
Gallery
Developers area

source: palm/trunk/SCRIPTS/.mrun.config.hlrnIII @ 1411

Last change on this file since 1411 was 1371, checked in by raasch, 11 years ago

default .mrun.config for HLRNIII extended for debug/trace mode
File size: 15.5 KB
Line 
1#$Id: .mrun.config.lcxe6 1044 2012-11-07 10:30:58Z maronga $
2#column 1          column 2                                   column 3
3#name of variable  value of variable (~ must not be used)     scope
4#----------------------------------------------------------------------------
5%mainprog          palm.f90
6%base_directory    $HOME/palm/current_version
7%base_data         ~/palm/current_version/JOBS
8%source_path       $base_directory/trunk/SOURCE
9%add_source_path   $base_directory/USER_CODE/$fname
10%depository_path   $base_directory/MAKE_DEPOSITORY
11%use_makefile      true
12#
13# Enter your own host below by adding another line containing in the second
14# column your hostname (as provided by the unix command "hostname") and in the
15# third column the host identifier. Depending on your operating system, the
16# first characters of the host identifier should be "lc" (Linux cluster), "ibm"
17# (IBM-AIX), or "nec" (NEC-SX), respectively.
18#
19# The next line is just an example. Add your own line below or replace this line.
20%host_identifier   blogin*      lccrayb
21%host_identifier   bxc*         lccrayb
22%host_identifier   hlogin*      lccrayh
23%host_identifier   hxcmom*      lccrayh
24#
25#
26# The next block contains all informations for compiling the PALM code
27# and for generating and running the PALM executable using MPI. Replace all
28# required paths (given in <>) by the respective paths valid on your host.
29# Also replace <hi> by your host identifier (see above) in each line!
30# Compilernames, cpp-options and compiler-options are assuming
31# an Intel-Compiler and mpich2 on this host! Please change
32# appropriately, if you are using a different compiler / MPI-Version.
33#
34# HLRN-III Berlin
35%tmp_user_catalog    /gfs1/work/<replace by your HLRN-III username>     lccrayb parallel
36%tmp_data_catalog    /gfs1/work/<replace by your HLRN-III username>     lccrayb parallel
37%compiler_name       ftn                                                lccrayb parallel
38%compiler_name_ser   ftn                                                lccrayb parallel
39%cpp_options         -e:Z:-DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf:-D__netcdf4:-D__netcdf4_parallel:-D__fftw   lccrayb parallel
40%mopts               -j:4                                               lccrayb parallel
41%fopts               -em:-O3:-hnoomp:-hfp3:-hdynamic                    lccrayb parallel
42%lopts               -em:-O3:-hnoomp:-hfp3:-hdynamic:-dynamic           lccrayb parallel
43%remote_username     <replace by your HLRN-III username>                lccrayb parallel
44%memory              1500                                               lccrayb parallel
45%modules             fftw:cray-hdf5-parallel:cray-netcdf-hdf5parallel   lccrayb parallel
46#
47# HLRN-III Berlin debug/trace mode
48%tmp_user_catalog    /gfs1/work/<replace by your HLRN-III username>     lccrayb parallel trace
49%tmp_data_catalog    /gfs1/work/<replace by your HLRN-III username>     lccrayb parallel trace
50%compiler_name       ftn                                                lccrayb parallel trace
51%compiler_name_ser   ftn                                                lccrayb parallel trace
52%cpp_options         -e:Z:-DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf:-D__netcdf4:-D__netcdf4_parallel:-D__fftw   lccrayb parallel trace
53%mopts               -j:4                                               lccrayb parallel trace
54%fopts               -eD:-em:-g:-R:b:-K:trap=fp:-O0:-hnoomp             lccrayb parallel trace
55%lopts               -eD:-em:-g:-R:b:-K:trap=fp:-O0:-hnoomp             lccrayb parallel trace
56%remote_username     <replace by your HLRN-III username>                lccrayb parallel trace
57%memory              1600                                               lccrayb parallel trace
58%modules             fftw:cray-hdf5-parallel:cray-netcdf-hdf5parallel   lccrayb parallel trace
59#
60# HLRN-III Hannover
61%tmp_user_catalog    /gfs1/work/<replace by your HLRN-III username>     lccrayh parallel
62%tmp_data_catalog    /gfs1/work/<replace by your HLRN-III username>     lccrayh parallel
63%compiler_name       ftn                                                lccrayh parallel
64%compiler_name_ser   ftn                                                lccrayh parallel
65%cpp_options         -e:Z:-DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf:-D__netcdf4:-D__netcdf4_parallel:-D__fftw   lccrayh parallel
66%mopts               -j:4                                               lccrayh parallel
67%fopts               -em:-O3:-hnoomp:-hfp3:-hdynamic                    lccrayh parallel
68%lopts               -em:-O3:-hnoomp:-hfp3:-hdynamic:-dynamic           lccrayh parallel
69%remote_username     <replace by your HLRN-III username>                lccrayh parallel
70%memory              1500                                               lccrayh parallel
71%modules             fftw:cray-hdf5-parallel:cray-netcdf-hdf5parallel   lccrayh parallel
72#
73# HLRN-III Hannover debug/trace mode
74%tmp_user_catalog    /gfs1/work/<replace by your HLRN-III username>     lccrayh parallel trace
75%tmp_data_catalog    /gfs1/work/<replace by your HLRN-III username>     lccrayh parallel trace
76%compiler_name       ftn                                                lccrayh parallel trace
77%compiler_name_ser   ftn                                                lccrayh parallel trace
78%cpp_options         -e:Z:-DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf:-D__netcdf4:-D__netcdf4_parallel:-D__fftw   lccrayh parallel trace
79%mopts               -j:4                                               lccrayh parallel trace
80%fopts               -eD:-em:-g:-R:b:-K:trap=fp:-O0:-hnoomp             lccrayh parallel trace
81%lopts               -eD:-em:-g:-R:b:-K:trap=fp:-O0:-hnoomp             lccrayh parallel trace
82%remote_username     <replace by your HLRN-III username>                lccrayh parallel trace
83%memory              1600                                               lccrayh parallel trace
84%modules             fftw:cray-hdf5-parallel:cray-netcdf-hdf5parallel   lccrayh parallel trace
85#             
86%write_binary        true                             restart
87#
88#----------------------------------------------------------------------------
89# INPUT-commands, executed before running PALM - lines must start with "IC:"
90#----------------------------------------------------------------------------
91#IC:
92IC:[[ \$localhost = lccrayb ]]  &&  export ATP_ENABLED=1
93IC:[[ \$localhost = lccrayb ]]  &&  export MPICH_GNI_BTE_MULTI_CHANNEL=disabled
94IC:[[ \$localhost = lccrayb ]]  &&  export APRUN_XFER_LIMITS=1
95IC:[[ \$localhost = lccrayb ]]  &&  export APRUN_XFER_STACK_LIMIT=0
96IC:[[ \$localhost = lccrayb ]]  &&  ulimit -v unlimited
97IC:[[ \$localhost = lccrayb ]]  &&  ulimit -s unlimited
98IC:[[ \$localhost = lccrayb ]]  &&  export MPICH_MPIIO_HINTS_DISPLAY=1
99IC:[[ \$localhost = lccrayb ]]  &&  export MPICH_MPIIO_STATS=1
100IC:[[ \$localhost = lccrayb ]]  &&  E8="=8"
101IC:[[ \$localhost = lccrayb ]]  &&  export MPICH_MPIIO_HINTS="*DATA_**:striping_factor"\$E8
102IC:[[ \$localhost = lccrayh ]]  &&  export ATP_ENABLED=1
103IC:[[ \$localhost = lccrayh ]]  &&  export MPICH_GNI_BTE_MULTI_CHANNEL=disabled
104IC:[[ \$localhost = lccrayh ]]  &&  export APRUN_XFER_LIMITS=1
105IC:[[ \$localhost = lccrayh ]]  &&  export APRUN_XFER_STACK_LIMIT=0
106IC:[[ \$localhost = lccrayh ]]  &&  ulimit -v unlimited
107IC:[[ \$localhost = lccrayh ]]  &&  ulimit -s unlimited
108IC:[[ \$localhost = lccrayh ]]  &&  export MPICH_MPIIO_HINTS_DISPLAY=1
109IC:[[ \$localhost = lccrayh ]]  &&  export MPICH_MPIIO_STATS=1
110IC:[[ \$localhost = lccrayh ]]  &&  E8="=8"
111IC:[[ \$localhost = lccrayh ]]  &&  export MPICH_MPIIO_HINTS="*DATA_**:striping_factor"\$E8
112#
113#----------------------------------------------------------------------------
114# ERROR-commands - executed when program terminates abnormally
115#----------------------------------------------------------------------------
116EC:[[ \$locat = execution ]]  &&  cat  RUN_CONTROL
117EC:pwd; ls -al
118#
119#----------------------------------------------------------------------------
120# OUTPUT-commands - executed when program terminates normally
121#----------------------------------------------------------------------------
122#
123# Combine 1D- and 3D-profile output (these files are not usable for plotting)
124OC:[[ -f LIST_PROFIL_1D     ]]  &&  cat  LIST_PROFIL_1D  >>  LIST_PROFILE
125OC:[[ -f LIST_PROFIL        ]]  &&  cat  LIST_PROFIL     >>  LIST_PROFILE
126#
127# Combine all particle information files
128OC:[[ -f PARTICLE_INFOS/_0000 ]]  &&  cat  PARTICLE_INFOS/* >> PARTICLE_INFO
129#
130#----------------------------------------------------------------------------
131# List of input-files
132#----------------------------------------------------------------------------
133PARIN                    in:job        d3#      $base_data/$fname/INPUT    _p3d
134PARIN                    in:job        d3f      $base_data/$fname/INPUT    _p3df
135TOPOGRAPHY_DATA          in:locopt     d3#:d3f  $base_data/$fname/INPUT    _topo
136NUDGING_DATA             in:locopt     d3#:d3f  $base_data/$fname/INPUT    _nudge
137LSF_DATA                 in:locopt     d3#:d3f  $base_data/$fname/INPUT    _lsf
138BININ                    in:loc:flpe   d3f      $base_data/$fname/RESTART  _d3d
139PARTICLE_RESTART_DATA_IN in:loc:flpe   prtf     $base_data/$fname/RESTART  _rprt
140DATA_1D_PR_NETCDF        in:locopt     prf      $base_data/$fname/OUTPUT   _pr     nc
141DATA_1D_SP_NETCDF        in:locopt     spf      $base_data/$fname/OUTPUT   _sp     nc
142DATA_1D_TS_NETCDF        in:locopt     tsf      $base_data/$fname/OUTPUT   _ts     nc
143DATA_1D_PTS_NETCDF       in:locopt     ptsf     $base_data/$fname/OUTPUT   _pts    nc
144DATA_2D_XY_NETCDF        in:locopt     xyf      $base_data/$fname/OUTPUT   _xy     nc
145DATA_2D_XY_AV_NETCDF     in:locopt     xyf      $base_data/$fname/OUTPUT   _xy_av  nc
146DATA_2D_XZ_NETCDF        in:locopt     xzf      $base_data/$fname/OUTPUT   _xz     nc
147DATA_2D_YZ_NETCDF        in:locopt     yzf      $base_data/$fname/OUTPUT   _yz     nc
148DATA_3D_NETCDF           in:locopt     3df      $base_data/$fname/OUTPUT   _3d     nc
149DATA_PRT_NETCDF          in:locopt:pe  prtf     $base_data/$fname/OUTPUT   _prt
150#
151#----------------------------------------------------------------------------
152# List of output-files
153#----------------------------------------------------------------------------
154BINOUT                    out:loc:flpe restart   $base_data/$fname/RESTART  _d3d
155PARTICLE_RESTART_DATA_OUT out:loc:flpe prt#:prtf $base_data/$fname/RESTART  _rprt
156#
157RUN_CONTROL       out:loc:tr   d3#     $base_data/$fname/MONITORING  _rc
158RUN_CONTROL       out:loc:tra  d3f     $base_data/$fname/MONITORING  _rc
159HEADER            out:loc:tr   d3#     $base_data/$fname/MONITORING  _header
160HEADER            out:loc:tra  d3f     $base_data/$fname/MONITORING  _header
161CPU_MEASURES      out:loc:tr   d3#     $base_data/$fname/MONITORING  _cpu
162CPU_MEASURES      out:loc:tra  d3f     $base_data/$fname/MONITORING  _cpu
163#
164DATA_1D_PR_NETCDF    out:loc:tr   pr#:prf   $base_data/$fname/OUTPUT  _pr     nc
165DATA_1D_SP_NETCDF    out:loc:tr   sp#:spf   $base_data/$fname/OUTPUT  _sp     nc
166DATA_1D_TS_NETCDF    out:loc:tr   ts#:tsf   $base_data/$fname/OUTPUT  _ts     nc
167DATA_1D_PTS_NETCDF   out:loc:tr   pts#:ptsf $base_data/$fname/OUTPUT  _pts    nc
168DATA_2D_XY_NETCDF    out:loc:tr   xy#:xyf   $base_data/$fname/OUTPUT  _xy     nc
169DATA_2D_XY_AV_NETCDF out:loc:tr   xy#:xyf   $base_data/$fname/OUTPUT  _xy_av  nc
170DATA_2D_XZ_NETCDF    out:loc:tr   xz#:xzf   $base_data/$fname/OUTPUT  _xz     nc
171DATA_2D_XZ_AV_NETCDF out:loc:tr   xz#:xzf   $base_data/$fname/OUTPUT  _xz_av  nc
172DATA_2D_YZ_NETCDF    out:loc:tr   yz#:yzf   $base_data/$fname/OUTPUT  _yz     nc
173DATA_2D_YZ_AV_NETCDF out:loc:tr   yz#:yzf   $base_data/$fname/OUTPUT  _yz_av  nc
174DATA_3D_NETCDF       out:loc:tr   3d#:3df   $base_data/$fname/OUTPUT  _3d     nc
175DATA_3D_AV_NETCDF    out:loc:tr   3d#:3df   $base_data/$fname/OUTPUT  _3d_av  nc
176DATA_MASK_01_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m01     nc
177DATA_MASK_01_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m01_av  nc
178DATA_MASK_02_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m02     nc
179DATA_MASK_02_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m02_av  nc
180DATA_MASK_03_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m03     nc
181DATA_MASK_03_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m03_av  nc
182DATA_MASK_04_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m04     nc
183DATA_MASK_04_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m04_av  nc
184DATA_MASK_05_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m05     nc
185DATA_MASK_05_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m05_av  nc
186DATA_MASK_06_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m06     nc
187DATA_MASK_06_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m06_av  nc
188DATA_MASK_07_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m07     nc
189DATA_MASK_07_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m07_av  nc
190DATA_MASK_08_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m08     nc
191DATA_MASK_08_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m08_av  nc
192DATA_MASK_09_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m09     nc
193DATA_MASK_09_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m09_av  nc
194DATA_MASK_10_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m10     nc
195DATA_MASK_10_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m10_av  nc
196DATA_MASK_11_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m11     nc
197DATA_MASK_11_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m11_av  nc
198DATA_MASK_12_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m12     nc
199DATA_MASK_12_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m12_av  nc
200DATA_MASK_13_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m13     nc
201DATA_MASK_13_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m13_av  nc
202DATA_MASK_14_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m14     nc
203DATA_MASK_14_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m14_av  nc
204DATA_MASK_15_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m15     nc
205DATA_MASK_15_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m15_av  nc
206DATA_MASK_16_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m16     nc
207DATA_MASK_16_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m16_av  nc
208DATA_MASK_17_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m17     nc
209DATA_MASK_17_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m17_av  nc
210DATA_MASK_18_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m18     nc
211DATA_MASK_18_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m18_av  nc
212DATA_MASK_19_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m19     nc
213DATA_MASK_19_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m19_av  nc
214DATA_MASK_20_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m20     nc
215DATA_MASK_20_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m20_av  nc
216DATA_PRT_NETCDF      out:loc:pe   prt#:prtf $base_data/$fname/OUTPUT  _prt    nc
217DATA_PRT_NETCDF      out:loc:trpe prt#:prtf $base_data/$fname/OUTPUT  _prt    nc
218DATA_DVR             out:loc:trpe dvr       $base_data/$fname/OUTPUT  _dvr
219#
220DVRP_LOG          out:loc:tr   dv#       $base_data/$fname/MONITORING  _dvrp_log
221DVRP_LOG          out:loc:tra  dvf       $base_data/$fname/MONITORING  _dvrp_log
222PARTICLE_INFO     out:loc:tr   pt#       $base_data/$fname/MONITORING  _prt_info
223PARTICLE_INFO     out:loc:tra  ptf       $base_data/$fname/MONITORING  _prt_info
224PARTICLE_DATA     out:loc:flpe prt#:prtf $base_data/$fname/OUTPUT      _prt_dat
225# A BLANK LINE MUST FOLLOW
Note: See TracBrowser for help on using the repository browser.
                                                                                                                                                                                                                                                                                                                                                                               
  | Impressum | ©Leibniz Universität Hannover |