| [1620] | 1 | #$Id: .mrun.config.dkrz 2264 2017-06-08 16:38:09Z kanani $ |
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| 2 | #column 1 column 2 column 3 |
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| 3 | #name of variable value of variable (~ must not be used) scope |
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| 4 | #---------------------------------------------------------------------------- |
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| 5 | %mainprog palm.f90 |
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| 6 | %base_directory $HOME/palm/current_version |
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| 7 | %base_data ~/palm/current_version/JOBS |
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| 8 | %source_path $base_directory/trunk/SOURCE |
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| 9 | %add_source_path $base_directory/USER_CODE/$fname |
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| 10 | %depository_path $base_directory/MAKE_DEPOSITORY |
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| 11 | #%use_makefile true |
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| 12 | # |
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| 13 | # Enter your own host below by adding another line containing in the second |
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| 14 | # column your hostname (as provided by the unix command "hostname") and in the |
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| 15 | # third column the host identifier. Depending on your operating system, the |
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| 16 | # first characters of the host identifier should be "lc" (Linux cluster), "ibm" |
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| 17 | # (IBM-AIX), or "nec" (NEC-SX), respectively. |
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| 18 | # |
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| 19 | # |
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| 20 | # The next line is just an example. Add your own line below or replace this line. |
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| 21 | %host_identifier mlogin1* lcbullhh |
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| 22 | %host_identifier m1* lcbullhh |
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| 23 | # |
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| 24 | # DKRZ Hamburg |
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| 25 | %project_account <replace_by_your_DKRZ_project_account> lcbullhh parallel |
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| 26 | %tmp_user_catalog /work/<replace_by_your_DKRZ_project_account>/<replace_by_your_DKRZ_username> lcbullhh parallel |
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| 27 | %tmp_data_catalog /work/<replace_by_your_DKRZ_project_account>/<replace_by_your_DKRZ_username>/JOBS lcbullhh parallel |
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| 28 | %compiler_name mpif90 lcbullhh parallel |
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| 29 | %compiler_name_ser ifort lcbullhh parallel |
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| [1625] | 30 | %fftw_inc -I:/sw/rhel6-x64/numerics/fftw-3.3.4-bullxmpi-gcc48/include lcbullhh parallel |
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| 31 | %fftw_lib -L/sw/rhel6-x64/numerics/fftw-3.3.4-bullxmpi-gcc48/lib:-lfftw3 lcbullhh parallel |
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| 32 | %netcdf_inc -I:/sw/rhel6-x64/netcdf/netcdf_fortran-4.4.2-parallel-bullxmpi-intel14/include lcbullhh parallel |
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| 33 | %netcdf_lib -L/sw/rhel6-x64/netcdf/netcdf_fortran-4.4.2-parallel-bullxmpi-intel14/lib:-lnetcdff lcbullhh parallel |
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| 34 | %cpp_options -cpp:-DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__lc:-D__parallel:-D__netcdf:-D__netcdf4:-D__netcdf4_parallel:-D__intel_compiler:-D__fftw=__fftw lcbullhh parallel |
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| [1620] | 35 | %mopts -j:4 lcbullhh parallel |
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| 36 | %fopts -O3:-nbs:-convert:little_endian lcbullhh parallel |
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| [1625] | 37 | %lopts -O3:-nbs:-convert:little_endian:-lc:-lm:-Wl,-rpath=/sw/rhel6-x64/netcdf/netcdf_fortran-4.4.2-parallel-bullxmpi-intel14/lib:-Wl,-rpath=/sw/rhel6-x64/numerics/fftw-3.3.4-bullxmpi-gcc48/lib lcbullhh parallel |
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| [1620] | 38 | %remote_username <replace_by_your_DKRZ_username> lcbullhh parallel |
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| 39 | %memory 1500 lcbullhh parallel |
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| 40 | %modules intel:mxm:fca:bullxmpi_mlx:nag lcbullhh parallel |
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| 41 | # |
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| 42 | # HLRN-III Hannover debug/trace mode |
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| 43 | %project_account <replace_by_your_DKRZ_project_account> lcbullhh parallel trace |
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| 44 | %tmp_user_catalog /work/<replace_by_your_DKRZ_project_account>/<replace_by_your_DKRZ_username> lcbullhh parallel trace |
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| 45 | %tmp_data_catalog /work/<replace_by_your_DKRZ_project_account>/<replace_by_your_DKRZ_username>/JOBS lcbullhh parallel trace |
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| 46 | %compiler_name mpif90 lcbullhh parallel trace |
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| 47 | %compiler_name_ser ifort lcbullhh parallel trace |
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| [1625] | 48 | %fftw_inc -I:/sw/rhel6-x64/numerics/fftw-3.3.4-bullxmpi-gcc48/include lcbullhh parallel trace |
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| 49 | %fftw_lib -L/sw/rhel6-x64/numerics/fftw-3.3.4-bullxmpi-gcc48/lib:-lfftw3 lcbullhh parallel trace |
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| 50 | %netcdf_inc -I:/sw/rhel6-x64/netcdf/netcdf_fortran-4.4.2-parallel-bullxmpi-intel14/include lcbullhh parallel trace |
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| 51 | %netcdf_lib -L/sw/rhel6-x64/netcdf/netcdf_fortran-4.4.2-parallel-bullxmpi-intel14/lib:-lnetcdff lcbullhh parallel trace |
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| 52 | %cpp_options -cpp:-DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__lc:-D__parallel:-D__netcdf:-D__netcdf4:-D__netcdf4_parallel:-D__intel_compiler:-D__fftw=__fftw lcbullhh parallel trace |
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| [1620] | 53 | %mopts -j:4 lcbullhh parallel trace |
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| 54 | %fopts -O0:-nbs:-convert:little_endian:-fpe0:-ftz:-fno-alias:-no-prec-div:-no-prec-sqrt:-ip:-C:-check:nooutput_conversion:-debug:-traceback:-g:-w:-xT:-align:all lcbullhh parallel trace |
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| [1625] | 55 | %lopts -O0:-nbs:-convert:little_endian:-fpe0:-ftz:-fno-alias:-no-prec-div:-no-prec-sqrt:-ip:-C:-check:nooutput_conversion:-debug:-traceback:-g:-w:-xT:-align:all:-lc:-lm:-Wl,-rpath=/sw/rhel6-x64/netcdf/netcdf_fortran-4.4.2-parallel-bullxmpi-intel14/lib:-Wl,-rpath=/sw/rhel6-x64/numerics/fftw-3.3.4-bullxmpi-gcc48/lib lcbullhh parallel trace |
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| [1620] | 56 | %remote_username <replace_by_your_DKRZ_username> lcbullhh parallel trace |
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| 57 | %memory 1500 lcbullhh parallel trace |
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| 58 | %modules intel:mxm:fca:bullxmpi_mlx:nag lcbullhh parallel trace |
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| 59 | # |
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| 60 | # |
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| 61 | %write_binary true restart |
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| 62 | # |
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| 63 | #---------------------------------------------------------------------------- |
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| 64 | # INPUT-commands, executed before running PALM - lines must start with "IC:" |
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| 65 | #---------------------------------------------------------------------------- |
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| 66 | #IC: |
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| 67 | # |
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| 68 | #---------------------------------------------------------------------------- |
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| 69 | # ERROR-commands - executed when program terminates abnormally |
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| 70 | #---------------------------------------------------------------------------- |
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| 71 | EC:[[ \$locat = execution ]] && cat RUN_CONTROL |
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| 72 | EC:pwd; ls -al |
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| 73 | # |
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| 74 | #---------------------------------------------------------------------------- |
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| 75 | # OUTPUT-commands - executed when program terminates normally |
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| 76 | #---------------------------------------------------------------------------- |
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| 77 | # Combine all particle information files |
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| 78 | OC:[[ -f PARTICLE_INFOS/_0000 ]] && cat PARTICLE_INFOS/* >> PARTICLE_INFO |
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| 79 | # |
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| 80 | #---------------------------------------------------------------------------- |
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| 81 | # List of input-files |
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| 82 | #---------------------------------------------------------------------------- |
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| 83 | PARIN in:job d3# $base_data/$fname/INPUT _p3d |
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| 84 | PARIN in:job d3f $base_data/$fname/INPUT _p3df |
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| 85 | TOPOGRAPHY_DATA in:locopt d3#:d3f $base_data/$fname/INPUT _topo |
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| [2236] | 86 | TOPOGRAPHY_DATA_NC in:locopt d3#:d3f $base_data/$fname/INPUT _topo_nc |
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| [1620] | 87 | NUDGING_DATA in:locopt d3#:d3f $base_data/$fname/INPUT _nudge |
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| 88 | LSF_DATA in:locopt d3#:d3f $base_data/$fname/INPUT _lsf |
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| [1914] | 89 | WTM_DATA in:locopt d3#:d3f $base_data/$fname/INPUT _wtm |
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| [2260] | 90 | STG_PROFILES in:locopt d3#:d3f $base_data/$fname/INPUT _stgpr |
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| [2264] | 91 | BININ in:loc:lnpe d3f $tmp_data_catalog/$fname/RESTART _d3d |
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| 92 | PARTICLE_RESTART_DATA_IN in:loc:lnpe prtf $tmp_data_catalog/$fname/RESTART _rprt |
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| [1959] | 93 | DATA_1D_FL_NETCDF in:locopt flf $base_data/$fname/OUTPUT _fl nc |
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| [1620] | 94 | DATA_1D_PR_NETCDF in:locopt prf $base_data/$fname/OUTPUT _pr nc |
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| 95 | DATA_1D_SP_NETCDF in:locopt spf $base_data/$fname/OUTPUT _sp nc |
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| 96 | DATA_1D_TS_NETCDF in:locopt tsf $base_data/$fname/OUTPUT _ts nc |
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| 97 | DATA_1D_PTS_NETCDF in:locopt ptsf $base_data/$fname/OUTPUT _pts nc |
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| 98 | DATA_2D_XY_NETCDF in:locopt xyf $base_data/$fname/OUTPUT _xy nc |
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| 99 | DATA_2D_XY_AV_NETCDF in:locopt xyf $base_data/$fname/OUTPUT _xy_av nc |
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| 100 | DATA_2D_XZ_NETCDF in:locopt xzf $base_data/$fname/OUTPUT _xz nc |
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| 101 | DATA_2D_YZ_NETCDF in:locopt yzf $base_data/$fname/OUTPUT _yz nc |
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| 102 | DATA_3D_NETCDF in:locopt 3df $base_data/$fname/OUTPUT _3d nc |
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| 103 | DATA_PRT_NETCDF in:locopt:pe prtf $base_data/$fname/OUTPUT _prt |
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| 104 | # |
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| 105 | #---------------------------------------------------------------------------- |
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| 106 | # List of output-files |
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| 107 | #---------------------------------------------------------------------------- |
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| [2264] | 108 | BINOUT out:loc:lnpe restart $tmp_data_catalog/$fname/RESTART _d3d |
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| 109 | PARTICLE_RESTART_DATA_OUT out:loc:lnpe prt#:prtf $tmp_data_catalog/$fname/RESTART _rprt |
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| [1620] | 110 | # |
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| 111 | RUN_CONTROL out:loc:tr d3# $base_data/$fname/MONITORING _rc |
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| 112 | RUN_CONTROL out:loc:tra d3f $base_data/$fname/MONITORING _rc |
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| 113 | HEADER out:loc:tr d3# $base_data/$fname/MONITORING _header |
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| 114 | HEADER out:loc:tra d3f $base_data/$fname/MONITORING _header |
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| 115 | CPU_MEASURES out:loc:tr d3# $base_data/$fname/MONITORING _cpu |
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| 116 | CPU_MEASURES out:loc:tra d3f $base_data/$fname/MONITORING _cpu |
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| [1914] | 117 | TURBINE_PARAMETERS01 out:loc:tr d3#:d3f $base_data/$fname/MONITORING _turbine_parameters01 |
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| 118 | TURBINE_PARAMETERS02 out:loc:tr d3#:d3f $base_data/$fname/MONITORING _turbine_parameters02 |
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| 119 | TURBINE_PARAMETERS03 out:loc:tr d3#:d3f $base_data/$fname/MONITORING _turbine_parameters03 |
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| 120 | TURBINE_PARAMETERS04 out:loc:tr d3#:d3f $base_data/$fname/MONITORING _turbine_parameters04 |
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| [1620] | 121 | # |
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| [1959] | 122 | DATA_1D_FL_NETCDF out:loc:tr fl#:flf $base_data/$fname/OUTPUT _fl nc |
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| [1620] | 123 | DATA_1D_PR_NETCDF out:loc:tr pr#:prf $base_data/$fname/OUTPUT _pr nc |
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| 124 | DATA_1D_SP_NETCDF out:loc:tr sp#:spf $base_data/$fname/OUTPUT _sp nc |
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| 125 | DATA_1D_TS_NETCDF out:loc:tr ts#:tsf $base_data/$fname/OUTPUT _ts nc |
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| 126 | DATA_1D_PTS_NETCDF out:loc:tr pts#:ptsf $base_data/$fname/OUTPUT _pts nc |
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| 127 | DATA_2D_XY_NETCDF out:loc:tr xy#:xyf $base_data/$fname/OUTPUT _xy nc |
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| 128 | DATA_2D_XY_AV_NETCDF out:loc:tr xy#:xyf $base_data/$fname/OUTPUT _xy_av nc |
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| 129 | DATA_2D_XZ_NETCDF out:loc:tr xz#:xzf $base_data/$fname/OUTPUT _xz nc |
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| 130 | DATA_2D_XZ_AV_NETCDF out:loc:tr xz#:xzf $base_data/$fname/OUTPUT _xz_av nc |
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| 131 | DATA_2D_YZ_NETCDF out:loc:tr yz#:yzf $base_data/$fname/OUTPUT _yz nc |
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| 132 | DATA_2D_YZ_AV_NETCDF out:loc:tr yz#:yzf $base_data/$fname/OUTPUT _yz_av nc |
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| 133 | DATA_3D_NETCDF out:loc:tr 3d#:3df $base_data/$fname/OUTPUT _3d nc |
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| 134 | DATA_3D_AV_NETCDF out:loc:tr 3d#:3df $base_data/$fname/OUTPUT _3d_av nc |
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| 135 | DATA_MASK_01_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m01 nc |
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| 136 | DATA_MASK_01_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m01_av nc |
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| 137 | DATA_MASK_02_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m02 nc |
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| 138 | DATA_MASK_02_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m02_av nc |
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| 139 | DATA_MASK_03_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m03 nc |
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| 140 | DATA_MASK_03_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m03_av nc |
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| 141 | DATA_MASK_04_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m04 nc |
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| 142 | DATA_MASK_04_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m04_av nc |
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| 143 | DATA_MASK_05_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m05 nc |
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| 144 | DATA_MASK_05_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m05_av nc |
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| 145 | DATA_MASK_06_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m06 nc |
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| 146 | DATA_MASK_06_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m06_av nc |
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| 147 | DATA_MASK_07_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m07 nc |
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| 148 | DATA_MASK_07_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m07_av nc |
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| 149 | DATA_MASK_08_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m08 nc |
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| 150 | DATA_MASK_08_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m08_av nc |
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| 151 | DATA_MASK_09_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m09 nc |
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| 152 | DATA_MASK_09_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m09_av nc |
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| 153 | DATA_MASK_10_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m10 nc |
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| 154 | DATA_MASK_10_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m10_av nc |
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| 155 | DATA_MASK_11_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m11 nc |
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| 156 | DATA_MASK_11_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m11_av nc |
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| 157 | DATA_MASK_12_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m12 nc |
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| 158 | DATA_MASK_12_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m12_av nc |
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| 159 | DATA_MASK_13_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m13 nc |
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| 160 | DATA_MASK_13_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m13_av nc |
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| 161 | DATA_MASK_14_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m14 nc |
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| 162 | DATA_MASK_14_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m14_av nc |
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| 163 | DATA_MASK_15_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m15 nc |
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| 164 | DATA_MASK_15_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m15_av nc |
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| 165 | DATA_MASK_16_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m16 nc |
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| 166 | DATA_MASK_16_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m16_av nc |
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| 167 | DATA_MASK_17_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m17 nc |
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| 168 | DATA_MASK_17_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m17_av nc |
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| 169 | DATA_MASK_18_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m18 nc |
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| 170 | DATA_MASK_18_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m18_av nc |
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| 171 | DATA_MASK_19_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m19 nc |
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| 172 | DATA_MASK_19_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m19_av nc |
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| 173 | DATA_MASK_20_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m20 nc |
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| 174 | DATA_MASK_20_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m20_av nc |
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| 175 | DATA_PRT_NETCDF out:loc:pe prt#:prtf $base_data/$fname/OUTPUT _prt nc |
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| 176 | DATA_PRT_NETCDF out:loc:trpe prt#:prtf $base_data/$fname/OUTPUT _prt nc |
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| 177 | DATA_DVR out:loc:trpe dvr $base_data/$fname/OUTPUT _dvr |
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| 178 | # |
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| 179 | DVRP_LOG out:loc:tr dv# $base_data/$fname/MONITORING _dvrp_log |
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| 180 | DVRP_LOG out:loc:tra dvf $base_data/$fname/MONITORING _dvrp_log |
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| 181 | PARTICLE_INFO out:loc:tr pt# $base_data/$fname/MONITORING _prt_info |
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| 182 | PARTICLE_INFO out:loc:tra ptf $base_data/$fname/MONITORING _prt_info |
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| [2264] | 183 | PARTICLE_DATA out:loc:lnpe prt#:prtf $tmp_data_catalog/$fname/OUTPUT _prt_dat |
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| [1620] | 184 | # A BLANK LINE MUST FOLLOW |
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