1 | #column 1 column 2 column 3 |
---|
2 | #name of variable value of variable (~ must not be used) scope |
---|
3 | #---------------------------------------------------------------------------- |
---|
4 | %mainprog palm.f90 |
---|
5 | %base_directory $HOME/palm/current_version |
---|
6 | %base_data ~/palm/current_version/JOBS |
---|
7 | %source_path $base_directory/trunk/SOURCE |
---|
8 | %add_source_path $base_directory/USER_CODE/$fname |
---|
9 | %depository_path $base_directory/MAKE_DEPOSITORY |
---|
10 | %use_makefile true |
---|
11 | # |
---|
12 | # Enter your own host below by adding another line containing in the second |
---|
13 | # column your hostname (as provided by the unix command "hostname") and in the |
---|
14 | # third column the host identifier. Depending on your operating system, the |
---|
15 | # first characters of the host identifier should be "lc" (Linux cluster), "ibm" |
---|
16 | # (IBM-AIX), or "nec" (NEC-SX), respectively. |
---|
17 | # |
---|
18 | # The next line is just an example. Add your own line below or replace this line. |
---|
19 | %host_identifier myhostname lcmy |
---|
20 | # |
---|
21 | # |
---|
22 | # The next block contains all informations for compiling the PALM code |
---|
23 | # and for generating and running the PALM executable using MPI. Replace all |
---|
24 | # required paths (given in <>) by the respective paths valid on your host. |
---|
25 | # Also replace <hi> by your host identifier (see above) in each line! |
---|
26 | # Compilernames, cpp-options and compiler-options are assuming |
---|
27 | # an Intel-Compiler and mpich2 on this host! Please change |
---|
28 | # appropriately, if you are using a different compiler / MPI-Version. |
---|
29 | # |
---|
30 | %tmp_user_catalog /tmp <hi> parallel |
---|
31 | %compiler_name mpif90 <hi> parallel |
---|
32 | %compiler_name_ser ifort <hi> parallel |
---|
33 | %cpp_options -D__mpi2:-DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf:-D__netcdf_64bit <hi> parallel |
---|
34 | %netcdf_inc -I:<replace by netcdf include path> <hi> parallel |
---|
35 | %netcdf_lib -L<replace by netcdf library path>:-lnetcdf <hi> parallel |
---|
36 | %fopts -axW:-cpp:-r8:-nbs:-convert:little_endian:-I:<replace by mpi include path> <hi> parallel |
---|
37 | %lopts -axW:-cpp:-r8:-nbs:-Vaxlib:-L:<replace by mpi library path> <hi> parallel |
---|
38 | # if you want to use your own hostfile, uncomment next line |
---|
39 | #%hostfile $base_directory/.hostfile <hi> parallel |
---|
40 | # if you want this host to be used as a remote host, uncomment next line |
---|
41 | #%remote_username <replace by your username on this host> <hi> parallel |
---|
42 | # |
---|
43 | %write_binary true restart |
---|
44 | # |
---|
45 | #---------------------------------------------------------------------------- |
---|
46 | # INPUT-commands, executed before running PALM - lines must start with "IC:" |
---|
47 | #---------------------------------------------------------------------------- |
---|
48 | #IC: |
---|
49 | # |
---|
50 | #---------------------------------------------------------------------------- |
---|
51 | # ERROR-commands - executed when program terminates abnormally |
---|
52 | #---------------------------------------------------------------------------- |
---|
53 | EC:[[ \$locat = execution ]] && cat RUN_CONTROL |
---|
54 | EC:pwd; ls -al |
---|
55 | # |
---|
56 | #---------------------------------------------------------------------------- |
---|
57 | # OUTPUT-commands - executed when program terminates normally |
---|
58 | #---------------------------------------------------------------------------- |
---|
59 | # |
---|
60 | # Combine 1D- and 3D-profile output (these files are not usable for plotting) |
---|
61 | OC:[[ -f LIST_PROFIL_1D ]] && cat LIST_PROFIL_1D >> LIST_PROFILE |
---|
62 | OC:[[ -f LIST_PROFIL ]] && cat LIST_PROFIL >> LIST_PROFILE |
---|
63 | # |
---|
64 | # Combine all particle information files |
---|
65 | OC:[[ -f PARTICLE_INFOS/_0000 ]] && cat PARTICLE_INFOS/* >> PARTICLE_INFO |
---|
66 | # |
---|
67 | # Collect plot data (2d/3d) into one file |
---|
68 | OC:combine_plot_fields.x |
---|
69 | # |
---|
70 | #---------------------------------------------------------------------------- |
---|
71 | # List of input-files |
---|
72 | #---------------------------------------------------------------------------- |
---|
73 | PARIN in:job d3# $base_data/$fname/INPUT _p3d |
---|
74 | PARIN in:job d3f $base_data/$fname/INPUT _p3df |
---|
75 | TOPOGRAPHY_DATA in:locopt d3#:d3f $base_data/$fname/INPUT _topo |
---|
76 | BININ in:loc:flpe d3f $base_data/$fname/RESTART _d3d |
---|
77 | PARTICLE_RESTART_DATA_IN in:loc:flpe prtf $base_data/$fname/RESTART _rprt |
---|
78 | DATA_1D_PR_NETCDF in:locopt prf $base_data/$fname/OUTPUT _pr nc |
---|
79 | DATA_1D_SP_NETCDF in:locopt spf $base_data/$fname/OUTPUT _sp nc |
---|
80 | DATA_1D_TS_NETCDF in:locopt tsf $base_data/$fname/OUTPUT _ts nc |
---|
81 | DATA_1D_PTS_NETCDF in:locopt ptsf $base_data/$fname/OUTPUT _pts nc |
---|
82 | DATA_2D_XY_NETCDF in:locopt xyf $base_data/$fname/OUTPUT _xy nc |
---|
83 | DATA_2D_XY_AV_NETCDF in:locopt xyf $base_data/$fname/OUTPUT _xy_av nc |
---|
84 | DATA_2D_XZ_NETCDF in:locopt xzf $base_data/$fname/OUTPUT _xz nc |
---|
85 | DATA_2D_YZ_NETCDF in:locopt yzf $base_data/$fname/OUTPUT _yz nc |
---|
86 | DATA_3D_NETCDF in:locopt 3df $base_data/$fname/OUTPUT _3d nc |
---|
87 | DATA_PRT_NETCDF in:locopt:pe prtf $base_data/$fname/OUTPUT _prt |
---|
88 | # |
---|
89 | #---------------------------------------------------------------------------- |
---|
90 | # List of output-files |
---|
91 | #---------------------------------------------------------------------------- |
---|
92 | BINOUT out:loc:flpe restart $base_data/$fname/RESTART _d3d |
---|
93 | PARTICLE_RESTART_DATA_OUT out:loc:flpe prt#:prtf $base_data/$fname/RESTART _rprt |
---|
94 | # |
---|
95 | RUN_CONTROL out:loc:tr d3# $base_data/$fname/MONITORING _rc |
---|
96 | RUN_CONTROL out:loc:tra d3f $base_data/$fname/MONITORING _rc |
---|
97 | HEADER out:loc:tr d3# $base_data/$fname/MONITORING _header |
---|
98 | HEADER out:loc:tra d3f $base_data/$fname/MONITORING _header |
---|
99 | CPU_MEASURES out:loc:tr d3# $base_data/$fname/MONITORING _cpu |
---|
100 | CPU_MEASURES out:loc:tra d3f $base_data/$fname/MONITORING _cpu |
---|
101 | # |
---|
102 | DATA_1D_PR_NETCDF out:loc:tr pr#:prf $base_data/$fname/OUTPUT _pr nc |
---|
103 | DATA_1D_SP_NETCDF out:loc:tr sp#:spf $base_data/$fname/OUTPUT _sp nc |
---|
104 | DATA_1D_TS_NETCDF out:loc:tr ts#:tsf $base_data/$fname/OUTPUT _ts nc |
---|
105 | DATA_1D_PTS_NETCDF out:loc:tr pts#:ptsf $base_data/$fname/OUTPUT _pts nc |
---|
106 | DATA_2D_XY_NETCDF out:loc:tr xy#:xyf $base_data/$fname/OUTPUT _xy nc |
---|
107 | DATA_2D_XY_AV_NETCDF out:loc:tr xy#:xyf $base_data/$fname/OUTPUT _xy_av nc |
---|
108 | DATA_2D_XZ_NETCDF out:loc:tr xz#:xzf $base_data/$fname/OUTPUT _xz nc |
---|
109 | DATA_2D_XZ_AV_NETCDF out:loc:tr xz#:xzf $base_data/$fname/OUTPUT _xz_av nc |
---|
110 | DATA_2D_YZ_NETCDF out:loc:tr yz#:yzf $base_data/$fname/OUTPUT _yz nc |
---|
111 | DATA_2D_YZ_AV_NETCDF out:loc:tr yz#:yzf $base_data/$fname/OUTPUT _yz_av nc |
---|
112 | DATA_3D_NETCDF out:loc:tr 3d#:3df $base_data/$fname/OUTPUT _3d nc |
---|
113 | DATA_3D_AV_NETCDF out:loc:tr 3d#:3df $base_data/$fname/OUTPUT _3d_av nc |
---|
114 | DATA_PRT_NETCDF out:loc:pe prt#:prtf $base_data/$fname/OUTPUT _prt nc |
---|
115 | DATA_PRT_NETCDF out:loc:trpe prt#:prtf $base_data/$fname/OUTPUT _prt nc |
---|
116 | # |
---|
117 | DVRP_LOG out:loc:tr dv# $base_data/$fname/MONITORING _dvrp_log |
---|
118 | DVRP_LOG out:loc:tra dvf $base_data/$fname/MONITORING _dvrp_log |
---|
119 | PARTICLE_INFO out:loc:tr pt# $base_data/$fname/MONITORING _prt_info |
---|
120 | PARTICLE_INFO out:loc:tra ptf $base_data/$fname/MONITORING _prt_info |
---|
121 | PARTICLE_DATA out:loc:flpe prt#:prtf $base_data/$fname/OUTPUT _prt_dat |
---|
122 | |
---|