| [2774] | 1 | #!/usr/bin/env bash |
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| 2 | #------------------------------------------------------------------------------# |
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| 3 | # This file is part of PALM. |
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| 4 | # |
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| 5 | # PALM is free software: you can redistribute it and/or modify it under the |
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| 6 | # terms of the GNU General Public License as published by the Free Software |
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| 7 | # Foundation, either version 3 of the License, or (at your option) any later |
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| 8 | # version. |
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| 9 | # |
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| 10 | # PALM is distributed in the hope that it will be useful, but WITHOUT ANY |
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| 11 | # WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR |
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| 12 | # A PARTICULAR PURPOSE. See the GNU General Public License for more details. |
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| 13 | # |
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| 14 | # You should have received a copy of the GNU General Public License along with |
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| 15 | # PALM. If not, see <http://www.gnu.org/licenses/>. |
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| 16 | # |
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| 17 | # Copyright 1997-2018 Leibniz Universitaet Hannover |
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| 18 | #------------------------------------------------------------------------------# |
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| 19 | # Temporary trunk side of the automatic installation scipt |
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| 20 | # WARNING: This script does not work as a standalone installer! |
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| 21 | #------------------------------------------------------------------------------# |
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| 22 | |
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| 23 | |
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| 24 | # install PALM |
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| 25 | palm_installer_build() { |
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| 26 | printf "%s\n" "${program_name} installer is configuring using cmake..." |
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| [3628] | 27 | if [[ "$palm_installer_build_rrtmg" == "true" ]]; then |
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| 28 | if [[ "$RRTMG_ROOT" == "" ]]; then |
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| 29 | RRTMG_ROOT=${install_prefix}/rrtmg |
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| 30 | fi |
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| 31 | fi |
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| [2774] | 32 | palm_installer_create_files |
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| 33 | rm -rf ${build_dir} |
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| 34 | mkdir -p ${build_dir} |
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| 35 | cd ${build_dir} |
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| 36 | cp ${trunk_dir}/SCRIPTS/.palm.config.default.in ${source_dir}/.palm.config.default.in |
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| 37 | cmake -Wno-dev ${CUSTOM_FORTRAN_COMPILER:+-DCMAKE_Fortran_COMPILER=}${CUSTOM_FORTRAN_COMPILER} \ |
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| 38 | ${NETCDF_C_ROOT:+-DNETCDF_C_ROOT=}${NETCDF_C_ROOT} \ |
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| 39 | ${NETCDF_FORTRAN_ROOT:+-DNETCDF_FORTRAN_ROOT=}${NETCDF_FORTRAN_ROOT} \ |
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| [3628] | 40 | ${RRTMG_ROOT:+-DRRTMG_ROOT=}${RRTMG_ROOT} \ |
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| [2774] | 41 | -DPALM_CORES=$NUM_PROC_BUILD \ |
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| 42 | -DCMAKE_BUILD_TYPE=Release \ |
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| 43 | ${install_prefix:+-DCMAKE_INSTALL_PREFIX=}${install_prefix} \ |
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| 44 | -DCMAKE_USERNAME=${USER} \ |
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| 45 | ${source_dir} |
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| 46 | if [[ $? -ne 0 ]]; then |
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| 47 | hrule |
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| 48 | printf "| \e[1;31m%-${number_of_cols}s\e[0m |\n" "Configuration failed!" |
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| 49 | palm_installer_ticket_message |
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| 50 | hrule |
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| 51 | exit 1 |
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| 52 | else |
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| 53 | hrule |
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| 54 | printf "| \e[1;32m%-${number_of_cols}s\e[0m |\n" "Configuration finished!" |
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| 55 | hrule |
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| 56 | fi |
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| 57 | palm_read_yn "Please check the configuration!!! Would you like to continue?" "RESPONSE_CONFIGURE" |
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| 58 | if [[ "$RESPONSE_CONFIGURE" != "y" ]]; then |
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| 59 | palm_installer_abort_message |
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| 60 | fi |
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| [3628] | 61 | if [[ "$palm_installer_build_rrtmg" == "true" ]]; then |
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| 62 | palm_installer_build_rrtmg |
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| 63 | fi |
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| [2774] | 64 | cd ${install_prefix} |
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| 65 | rm -rf ${source_dir} |
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| 66 | rm -rf MAKE_DEPOSITORY_parallel |
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| [3506] | 67 | bash ${trunk_dir}/SCRIPTS/palmbuild -v -c "default" |
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| [2774] | 68 | } |
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| 69 | |
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| [3628] | 70 | palm_installer_build_rrtmg() { |
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| 71 | printf "%s\n" "${program_name} installer is building the RRTMG library..." |
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| 72 | local version="1.0" |
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| 73 | local prog="librrtmg" |
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| 74 | build_dir_rrtmg=${source_dir}/rrtmg |
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| 75 | mkdir -p ${build_dir_rrtmg} |
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| 76 | cp ${trunk_dir}/LIB/rrtmg/*.f90 ${build_dir_rrtmg}/ |
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| 77 | cp ${trunk_dir}/LIB/rrtmg/Makefile ${build_dir_rrtmg}/ |
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| 78 | cd ${build_dir_rrtmg} |
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| 79 | bash ${build_dir_rrtmg}/build_rrtmg |
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| 80 | mkdir -p ${build_dir_rrtmg}/lib |
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| 81 | mkdir -p ${build_dir_rrtmg}/include |
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| 82 | cp ${build_dir_rrtmg}/$prog.so ${build_dir_rrtmg}/lib/$prog.so.$version |
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| 83 | cp ${build_dir_rrtmg}/*.mod ${build_dir_rrtmg}/include/ |
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| 84 | mkdir -p ${RRTMG_ROOT}/lib |
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| 85 | mkdir -p ${RRTMG_ROOT}/include |
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| 86 | cp ${build_dir_rrtmg}/lib/$prog.so.$version ${RRTMG_ROOT}/lib/ |
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| 87 | cp ${build_dir_rrtmg}/include/*.mod ${RRTMG_ROOT}/include/ |
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| 88 | if [ -f ${RRTMG_ROOT}/lib/$prog.so.1 ] |
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| 89 | then |
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| 90 | rm ${RRTMG_ROOT}/lib/$prog.so.1 |
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| 91 | fi |
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| 92 | ln -s ${RRTMG_ROOT}/lib/$prog.so.$version ${RRTMG_ROOT}/lib/$prog.so.1 |
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| 93 | if [ -f ${RRTMG_ROOT}/lib/$prog.so ] |
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| 94 | then |
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| 95 | rm ${RRTMG_ROOT}/lib/$prog.so |
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| 96 | fi |
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| 97 | ln -s ${RRTMG_ROOT}/lib/$prog.so.1 ${RRTMG_ROOT}/lib/$prog.so |
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| 98 | } |
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| 99 | |
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| [2774] | 100 | palm_installer_set_path() { |
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| 101 | [[ -w ${HOME}/.mybashrc ]] && shell_profile=${HOME}/.mybashrc |
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| 102 | if [[ ! -w ${shell_profile} ]]; then |
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| 103 | printf "\e[1;31mWARNING\e[0m: ${program_name} binary \e[1;31mpath could not be written\e[0m to \"${shell_profile}\"\n" |
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| 104 | printf "In order to run the ${program_name} execution script \"mrun\" you need to set the following paths\n" |
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| 105 | printf " export PALM_BIN=${trunk_dir}/SCRIPTS\n" |
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| 106 | printf " export PATH=\$PALM_BIN:\$PATH\n" |
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| 107 | elif grep -q "^export PALM_BIN=${trunk_dir}/SCRIPTS" ${shell_profile}; then |
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| 108 | printf "${program_name} binary \e[1;32mpath already set correctly\e[0m in \"${shell_profile}\"\n" |
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| 109 | else |
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| 110 | if grep -q "PALM_BIN" ${shell_profile}; then |
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| 111 | sed -i "s@^[^#]\(.*PALM_BIN.*\)@#e\1@" ${shell_profile} |
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| 112 | printf "${program_name} binary \e[1;32mpath updated\e[0m in \"${shell_profile}\"" |
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| 113 | else |
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| 114 | printf "${program_name} binary \e[1;32mpath written\e[0m to \"${shell_profile}\"" |
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| 115 | fi |
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| 116 | cat >> ${shell_profile} << EOF |
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| 117 | #------------------------------------------------------------------------------- |
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| 118 | ##PALM## |
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| 119 | export PALM_BIN=${trunk_dir}/SCRIPTS |
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| 120 | export PATH=\$PALM_BIN:\$PATH |
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| 121 | |
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| 122 | EOF |
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| 123 | fi |
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| 124 | export PALM_BIN=${trunk_dir}/SCRIPTS |
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| 125 | export PATH=$PALM_BIN:$PATH |
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| 126 | echo " " |
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| 127 | } |
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| 128 | |
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| 129 | palm_installer_test() { |
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| 130 | hrule |
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| 131 | printf "Testing ${program_name} with \"${1}\"... " |
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| 132 | source ${shell_profile} |
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| 133 | local input_dir=${install_prefix}/JOBS/${1}/INPUT/ |
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| 134 | local monitoring_dir=${install_prefix}/JOBS/${1}/MONITORING/ |
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| [3631] | 135 | local test_dir=${trunk_dir}/TESTS/cases |
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| [2774] | 136 | rm -rf ${monitoring_dir} |
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| 137 | mkdir -p ${input_dir} |
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| [3631] | 138 | cp ${test_dir}/${1}/INPUT/${1}_p3d ${input_dir} |
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| [3506] | 139 | bash ${trunk_dir}/SCRIPTS/palmrun -r ${1} -a "d3#" -c "default" -X "$NUM_PROC_TEST" -T "$NUM_PROC_TEST" -v -B > ${install_prefix}/${logfile_test} 2>&1 |
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| [2774] | 140 | grep -A 99999 "Run-control output" JOBS/${1}/MONITORING/${1}_rc 1> ${install_prefix}/RC_LOCAL 2> /dev/null |
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| [3631] | 141 | grep -A 99999 "Run-control output" ${test_dir}/${1}/MONITORING/${1}_rc 1> ${install_prefix}/RC_DEFAULT 2> /dev/null |
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| [2774] | 142 | diff_output=$(diff ${install_prefix}/RC_DEFAULT ${install_prefix}/RC_LOCAL) |
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| 143 | rm ${install_prefix}/RC_LOCAL ${install_prefix}/RC_DEFAULT |
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| 144 | if [[ "${diff_output}" == "" ]]; then |
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| 145 | printf "\e[1;32m passed\e[0m\n" |
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| 146 | return 0 |
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| 147 | else |
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| 148 | printf "\e[1;31m failed\e[0m\n" |
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| 149 | test_status="failed" |
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| 150 | return 1 |
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| 151 | fi |
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| 152 | } |
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| 153 | |
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| 154 | palm_installer_test_suite() { |
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| 155 | rm -f ${install_prefix}/${logfile_test} |
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| [3631] | 156 | palm_installer_test "example_cbl_short" # ToDo: replace with palmtest python script |
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| [2774] | 157 | hrule |
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| 158 | cat ${install_prefix}/${logfile_test} >> ${logfile_all} |
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| 159 | if [[ "${test_status}" == "failed" ]]; then |
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| 160 | printf "| \e[1;31m%-${number_of_cols}s\e[0m \n" "Some tests failed. ${program_name} installation not successful :-(" |
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| 161 | printf "| \e[1;31m%-${number_of_cols}s\e[0m \n" "More detailed information regarding the failure can be found in file:" |
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| 162 | printf "| \e[1;31m%-${number_of_cols}s\e[0m \n" " ${install_prefix}/${logfile_test}" |
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| 163 | palm_installer_ticket_message |
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| 164 | hrule |
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| 165 | exit 1 |
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| 166 | else |
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| 167 | printf "| \e[1;32m%-${number_of_cols}s\e[0m |\n" "All found tests passed. ${program_name} installation successful :-)" |
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| 168 | rm -f ${install_prefix}/${logfile_test} |
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| 169 | rm -rf ${install_prefix}/tmp/* |
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| 170 | hrule |
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| 171 | fi |
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| 172 | } |
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| 173 | |
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| 174 | palm_post_installer_help() { |
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| 175 | hrule |
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| 176 | printf "| %-${number_of_cols}s \n" " " |
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| 177 | printf "| %-${number_of_cols}s \n" "-- To use ${program_name} it is required to update your PATH variable. Please type:" |
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| 178 | printf "| %-${number_of_cols}s \n" " " |
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| 179 | printf "| %-${number_of_cols}s \n" " source ${shell_profile}" |
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| 180 | printf "| %-${number_of_cols}s \n" " " |
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| 181 | printf "| %-${number_of_cols}s \n" " or restart your shell." |
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| 182 | printf "| %-${number_of_cols}s \n" " " |
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| 183 | printf "| %-${number_of_cols}s \n" "-- To work with ${program_name} please go to your ${program_name} base directory:" |
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| 184 | printf "| %-${number_of_cols}s \n" " " |
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| 185 | printf "| %-${number_of_cols}s \n" " cd ${install_prefix}" |
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| 186 | printf "| %-${number_of_cols}s \n" " " |
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| 187 | printf "| %-${number_of_cols}s \n" "-- To start the model, please use \"palmrun\" with appropriate options. For example:" |
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| 188 | printf "| %-${number_of_cols}s \n" " " |
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| [3506] | 189 | printf "| %-${number_of_cols}s \n" " palmrun -r example_cbl -a \"d3#\" -c \"default\" -X \"$NUM_PROC_TEST\" -T \"$NUM_PROC_TEST\" " |
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| [2774] | 190 | printf "| %-${number_of_cols}s \n" " | | | | | " |
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| 191 | printf "| %-${number_of_cols}s \n" " Job name | configuration | tasks per node " |
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| 192 | printf "| %-${number_of_cols}s \n" " I/O control list number of cores " |
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| 193 | printf "| %-${number_of_cols}s \n" " " |
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| 194 | printf "| %-${number_of_cols}s \n" "-- Edit \".palm.config.default\" to customize this ${program_name} installation." |
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| [3506] | 195 | printf "| %-${number_of_cols}s \n" "-- To rebuild ${program_name} type: palmbuild -c \"default\"" |
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| [2774] | 196 | printf "| %-${number_of_cols}s \n" " " |
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| 197 | printf "| %-${number_of_cols}s \n" "-- For further questions go to: https://palm.muk.uni-hannover.de/." |
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| 198 | printf "| %-${number_of_cols}s \n" " " |
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| 199 | } |
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| 200 | |
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| 201 | palm_installer_create_files() { |
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| 202 | mkdir -p ${source_dir} |
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| 203 | |
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| 204 | cat > ${source_dir}/CMakeLists.txt << EOF |
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| 205 | # This is the CMake configuration file for PALM |
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| 206 | |
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| 207 | cmake_minimum_required (VERSION 2.8) |
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| 208 | |
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| 209 | # set program name |
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| 210 | set(PALM_PROGRAM_NAME "PALM") |
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| 211 | |
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| 212 | project(\${PALM_PROGRAM_NAME} NONE) |
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| 213 | exec_program( hostname OUTPUT_VARIABLE PALM_HOSTNAME) |
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| 214 | |
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| 215 | # .palm.config locations |
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| 216 | set(config_in \${CMAKE_CURRENT_SOURCE_DIR}/.palm.config.default.in) |
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| 217 | set(config \${CMAKE_INSTALL_PREFIX}/.palm.config.default) |
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| 218 | |
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| [3628] | 219 | # palmtest.yml locations |
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| 220 | set(palmtest_in \${CMAKE_CURRENT_SOURCE_DIR}/.palmtest.yml.in) |
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| 221 | set(palmtest \${CMAKE_INSTALL_PREFIX}/palmtest.yml) |
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| 222 | |
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| 223 | # build_rrtmg locations |
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| 224 | set(build_rrtmg_in \${CMAKE_CURRENT_SOURCE_DIR}/build_rrtmg.in) |
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| 225 | set(build_rrtmg \${CMAKE_CURRENT_SOURCE_DIR}/rrtmg/build_rrtmg) |
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| 226 | |
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| [2774] | 227 | # include local cmake files |
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| 228 | set(PALM_CMAKE_FILES \${CMAKE_CURRENT_SOURCE_DIR}) |
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| 229 | list(APPEND CMAKE_MODULE_PATH \${PALM_CMAKE_FILES}) |
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| 230 | |
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| 231 | # enabling Fortran language support |
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| 232 | enable_language(Fortran) # required to compile the main model and all utilities |
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| 233 | |
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| 234 | # check for Fortran MPI support |
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| 235 | find_package(MPI REQUIRED) |
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| 236 | |
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| 237 | # check for netCDF |
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| 238 | #set(NETCDF_C "YES") |
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| 239 | set(NETCDF_FORTRAN "YES") |
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| 240 | find_package (NetCDF REQUIRED) |
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| 241 | find_program(NETCDF_FORTRAN_COMPILER_FULL NAMES \${NETCDF_FORTRAN_COMPILER}) |
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| 242 | if(NOT \${CMAKE_Fortran_COMPILER} STREQUAL \${NETCDF_FORTRAN_COMPILER_FULL} ) |
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| 243 | message(WARNING "Fortran compiler \"\${CMAKE_Fortran_COMPILER}\" does not match netCDF Fortran compiler \"\${NETCDF_FORTRAN_COMPILER_FULL}\".") |
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| 244 | else() |
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| 245 | message(STATUS "Fortran compiler matches netCDF Fortran compiler.") |
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| 246 | endif() |
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| 247 | |
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| 248 | # extract subversion info |
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| 249 | if (${SVN_CMAKE_CHECK}) |
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| 250 | find_package(Subversion) |
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| 251 | if(SUBVERSION_FOUND) |
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| 252 | Subversion_WC_INFO(\${PROJECT_SOURCE_DIR}/../trunk PALM) |
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| 253 | message(STATUS "Your \${PALM_PROGRAM_NAME} installation will be based on revision \${PALM_WC_REVISION}.") |
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| 254 | else(SUBVERSION_FOUND) |
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| 255 | message(WARNING "Subversion not found. Wondering how you aquired the PALM code. :-)") |
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| 256 | endif(SUBVERSION_FOUND) |
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| 257 | endif() |
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| 258 | |
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| 259 | # check for fftw |
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| 260 | find_package(FFTW) |
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| 261 | if(FFTW_FOUND) |
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| 262 | message(STATUS "\${PALM_PROGRAM_NAME} is using an external fftw library.") |
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| 263 | list(APPEND PALM_CPP_OPTIONS __fftw) |
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| 264 | else(FFTW_FOUND) |
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| 265 | message(STATUS "\${PALM_PROGRAM_NAME} is using the buildin fft algorithm.") |
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| 266 | endif(FFTW_FOUND) |
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| 267 | |
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| 268 | # compiler flag management |
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| 269 | if(\${CMAKE_Fortran_COMPILER_ID} STREQUAL "Cray") |
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| 270 | set(PALM_COMPILER_OPTIONS "-em -K trap=fp -O3 -hnoomp -hnoacc -hfp3 -hdynamic") |
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| 271 | set(PALM_LINKER_OPTIONS "\${PALM_COMPILER_OPTIONS} -dynamic") |
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| 272 | set(PALM_CPP_FLAGS "-eZ") |
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| 273 | elseif(\${CMAKE_Fortran_COMPILER_ID} STREQUAL "Intel") |
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| 274 | set(PALM_COMPILER_OPTIONS "-O3 -fp-model source -fno-alias -fpe0 -ftz -no-prec-div -no-prec-sqrt -ip -nbs -diag-disable 8290,8291") |
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| 275 | set(PALM_LINKER_OPTIONS "\${PALM_COMPILER_OPTIONS}") |
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| 276 | set(PALM_CPP_FLAGS "-cpp") |
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| 277 | list(APPEND PALM_CPP_OPTIONS __intel_compiler) |
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| 278 | elseif(\${CMAKE_Fortran_COMPILER_ID} STREQUAL "GNU") |
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| 279 | set(PALM_COMPILER_OPTIONS "-Ofast -ffree-line-length-none") |
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| 280 | set(PALM_LINKER_OPTIONS "\${PALM_COMPILER_OPTIONS}") |
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| 281 | set(PALM_CPP_FLAGS "-cpp") |
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| 282 | list(APPEND PALM_CPP_OPTIONS __gfortran) |
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| 283 | endif() |
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| 284 | |
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| 285 | # workaround |
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| 286 | list(APPEND PALM_CPP_OPTIONS __parallel) |
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| 287 | |
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| 288 | # adding cpp options |
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| 289 | list(APPEND PALM_CPP_OPTIONS MPI_REAL=MPI_DOUBLE_PRECISION) |
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| 290 | list(APPEND PALM_CPP_OPTIONS MPI_2REAL=MPI_2DOUBLE_PRECISION) |
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| 291 | if(NETCDF_FOUND) |
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| 292 | list(APPEND PALM_CPP_OPTIONS __netcdf) |
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| 293 | set(PALM_COMPILER_OPTIONS "\${PALM_COMPILER_OPTIONS} -I \${NETCDF_INCLUDES}") |
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| 294 | set(PALM_LINKER_OPTIONS "\${PALM_LINKER_OPTIONS} \${NETCDF_LIBRARIES}") |
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| [3628] | 295 | set(PALMTEST_NETCDF_INCLUDES "netcdf: \"-I \${NETCDF_INCLUDES}\"") |
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| 296 | set(PALMTEST_NETCDF_LIBRARIES "netcdf: \"\${NETCDF_LIBRARIES}\"") |
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| [2774] | 297 | endif() |
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| 298 | |
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| 299 | if(FFTW_FOUND) |
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| 300 | set(PALM_COMPILER_OPTIONS "\${PALM_COMPILER_OPTIONS} -I \${FFTW_INCLUDES}") |
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| 301 | set(PALM_LINKER_OPTIONS "\${PALM_LINKER_OPTIONS} \${FFTW_LIBRARIES}") |
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| [3628] | 302 | set(PALMTEST_FFTW_INCLUDES "fftw: \"-I \${FFTW_INCLUDES}\"") |
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| 303 | set(PALMTEST_FFTW_LIBRARIES "fftw: \"\${FFTW_LIBRARIES}\"") |
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| [2774] | 304 | endif() |
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| 305 | |
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| [3628] | 306 | if(RRTMG_ROOT) |
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| 307 | set(PALMTEST_RRTMG_INCLUDES "rrtmg: \"-I \${RRTMG_ROOT}/include\"") |
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| 308 | set(PALMTEST_RRTMG_LIBRARIES "rrtmg: \"\${RRTMG_ROOT}/lib/librrtmg.so\"") |
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| 309 | endif() |
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| 310 | |
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| [2774] | 311 | string(REPLACE ";" " -D" PALM_CPP_OPTIONS_STR_1 "\${PALM_CPP_OPTIONS}") |
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| 312 | set(PALM_CPP_OPTIONS_STR "\${PALM_CPP_FLAGS} -D\${PALM_CPP_OPTIONS_STR_1}") |
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| 313 | |
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| 314 | # configuring the .palm.config |
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| 315 | configure_file(\${config_in} \${config} @ONLY) |
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| 316 | |
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| [3628] | 317 | # configuring the palmtest.yml |
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| 318 | configure_file(\${palmtest_in} \${palmtest} @ONLY) |
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| [2774] | 319 | |
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| [3628] | 320 | if(RRTMG_ROOT) |
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| 321 | # configuring the build_rrtmg |
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| 322 | configure_file(\${build_rrtmg_in} \${build_rrtmg} @ONLY) |
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| 323 | endif() |
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| 324 | |
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| [2774] | 325 | EOF |
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| 326 | |
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| 327 | cat > ${source_dir}/FindFFTW.cmake << EOF |
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| 328 | # - Find FFTW |
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| 329 | # Find the native FFTW includes and library |
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| 330 | # |
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| 331 | # FFTW_INCLUDES - where to find fftw3.h |
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| 332 | # FFTW_LIBRARIES - List of libraries when using FFTW. |
|---|
| 333 | # FFTW_FOUND - True if FFTW found. |
|---|
| 334 | |
|---|
| 335 | if (FFTW_INCLUDES) |
|---|
| 336 | # Already in cache, be silent |
|---|
| 337 | set (FFTW_FIND_QUIETLY TRUE) |
|---|
| 338 | endif (FFTW_INCLUDES) |
|---|
| 339 | |
|---|
| 340 | #exec_program(sed ARGS -i '/%fftw_inc.*/d' \${config}) |
|---|
| 341 | #list(APPEND NETCDF_HINTS "\$ENV{LD_LIBRARY_PATH}") |
|---|
| 342 | |
|---|
| 343 | find_path (FFTW_INCLUDES fftw3.f03 HINTS \${NETCDF_HINTS} ENV LD_LIBRARY_PATH PATH_SUFFIXES include Include) |
|---|
| 344 | find_library(NETCDF_FORTRAN_LIB netcdff HINTS \${NETCDF_HINTS} ENV LD_LIBRARY_PATH PATH_SUFFIXES lib lib64) |
|---|
| 345 | |
|---|
| 346 | find_library (FFTW_LIBRARIES NAMES fftw3) |
|---|
| 347 | |
|---|
| 348 | # handle the QUIETLY and REQUIRED arguments and set FFTW_FOUND to TRUE if |
|---|
| 349 | # all listed variables are TRUE |
|---|
| 350 | include (FindPackageHandleStandardArgs) |
|---|
| 351 | find_package_handle_standard_args (FFTW DEFAULT_MSG FFTW_LIBRARIES FFTW_INCLUDES) |
|---|
| 352 | |
|---|
| 353 | mark_as_advanced (FFTW_LIBRARIES FFTW_INCLUDES) |
|---|
| 354 | |
|---|
| 355 | EOF |
|---|
| 356 | |
|---|
| 357 | cat > ${source_dir}/FindNetCDF.cmake << EOF |
|---|
| 358 | # - Find NetCDF |
|---|
| 359 | # Find the native NetCDF includes and library |
|---|
| 360 | # |
|---|
| 361 | # NETCDF_INCLUDES - where to find netcdf.h, etc |
|---|
| 362 | # NETCDF_LIBRARIES - Link these libraries when using NetCDF |
|---|
| 363 | # NETCDF_FOUND - True if NetCDF found including required interfaces (see below) |
|---|
| 364 | # |
|---|
| 365 | # Your package can require certain interfaces to be FOUND by setting these |
|---|
| 366 | # |
|---|
| 367 | # NETCDF_C - require the C interface and link the C library |
|---|
| 368 | # NETCDF_CXX - require the C++ interface and link the C++ library |
|---|
| 369 | # NETCDF_FORTRAN - require the Fortran interface and link the Fortran library |
|---|
| 370 | # |
|---|
| 371 | # The following are not for general use and are included in |
|---|
| 372 | # NETCDF_LIBRARIES if the corresponding option above is set. |
|---|
| 373 | # |
|---|
| 374 | # NETCDF_LIBRARIES_C - Just the C interface |
|---|
| 375 | # NETCDF_LIBRARIES_CXX - C++ interface, if available |
|---|
| 376 | # NETCDF_LIBRARIES_FORTRAN - Fortran 90 interface, if available |
|---|
| 377 | # |
|---|
| 378 | # Normal usage would be: |
|---|
| 379 | # set (NETCDF_FORTRAN "YES") |
|---|
| 380 | # find_package (NetCDF REQUIRED) |
|---|
| 381 | # target_link_libraries (uses_f90_interface \${NETCDF_LIBRARIES}) |
|---|
| 382 | |
|---|
| 383 | if (NETCDF_INCLUDES AND NETCDF_LIBRARIES) |
|---|
| 384 | # Already in cache, be silent |
|---|
| 385 | set (NETCDF_FIND_QUIETLY TRUE) |
|---|
| 386 | endif (NETCDF_INCLUDES AND NETCDF_LIBRARIES) |
|---|
| 387 | |
|---|
| 388 | |
|---|
| 389 | macro(NETCDF_CONFIG flag output) |
|---|
| 390 | if(NETCDF_CONFIG_EXECUTABLE) |
|---|
| 391 | exec_program( \${NETCDF_CONFIG_EXECUTABLE} ARGS \${flag} |
|---|
| 392 | OUTPUT_VARIABLE \${output} RETURN_VALUE return_value) |
|---|
| 393 | if(NOT \${return_value} EQUAL 0 ) |
|---|
| 394 | message( STATUS "Unable to determine \${flag} from \${NETCDF_CONFIG_EXECUTABLE}." ) |
|---|
| 395 | endif() |
|---|
| 396 | endif(NETCDF_CONFIG_EXECUTABLE) |
|---|
| 397 | endmacro() |
|---|
| 398 | |
|---|
| 399 | if(NETCDF_C_ROOT) |
|---|
| 400 | list(APPEND NETCDF_HINTS "\${NETCDF_C_ROOT}") |
|---|
| 401 | else() |
|---|
| 402 | list(APPEND NETCDF_HINTS "\$ENV{NETCDF_ROOT}") |
|---|
| 403 | endif() |
|---|
| 404 | |
|---|
| 405 | if(NETCDF_FORTRAN_ROOT) |
|---|
| 406 | list(APPEND NETCDF_HINTS "\${NETCDF_FORTRAN_ROOT}") |
|---|
| 407 | else() |
|---|
| 408 | list(APPEND NETCDF_HINTS "\$ENV{NETCDF_ROOT}") |
|---|
| 409 | endif() |
|---|
| 410 | |
|---|
| 411 | if(NETCDF_C_ROOT) |
|---|
| 412 | find_program(NETCDF_C_CONFIG_EXECUTABLE NAMES nc-config |
|---|
| 413 | HINTS \${NETCDF_HINTS} PATH_SUFFIXES bin Bin NO_DEFAULT_PATH |
|---|
| 414 | DOC "NETCDF CONFIG PROGRAM. Used to detect NETCDF compile flags." ) |
|---|
| 415 | else() |
|---|
| 416 | find_program(NETCDF_C_CONFIG_EXECUTABLE NAMES nc-config |
|---|
| 417 | HINTS \${NETCDF_HINTS} PATH_SUFFIXES bin Bin |
|---|
| 418 | DOC "NETCDF CONFIG PROGRAM. Used to detect NETCDF compile flags." ) |
|---|
| 419 | endif() |
|---|
| 420 | |
|---|
| 421 | set(NETCDF_CONFIG_EXECUTABLE \${NETCDF_C_CONFIG_EXECUTABLE}) |
|---|
| 422 | if(NETCDF_C_CONFIG_EXECUTABLE) |
|---|
| 423 | NETCDF_CONFIG(--cc NETCDF_C_COMPILER_C) |
|---|
| 424 | NETCDF_CONFIG(--fc NETCDF_C_COMPILER_FORTRAN) |
|---|
| 425 | NETCDF_CONFIG(--prefix NETCDF_C_ROOT) |
|---|
| 426 | NETCDF_CONFIG(--includedir NETCDF_C_INCLUDE) |
|---|
| 427 | NETCDF_CONFIG(--version NETCDF_C_VERSION) |
|---|
| 428 | #NETCDF_CONFIG(--has-c++ NETCDF_C_CXX) |
|---|
| 429 | #NETCDF_CONFIG(--has-f77 NETCDF_C_F77) |
|---|
| 430 | NETCDF_CONFIG(--has-f90 NETCDF_C_F90) |
|---|
| 431 | #NETCDF_CONFIG(--has-dap NETCDF_C_DAP) |
|---|
| 432 | #NETCDF_CONFIG(--has-nc2 NETCDF_C_NC2) |
|---|
| 433 | #NETCDF_CONFIG(--has-nc4 NETCDF_C_NC4) |
|---|
| 434 | #NETCDF_CONFIG(--has-hdf4 NETCDF_C_HDF4) |
|---|
| 435 | #NETCDF_CONFIG(--has-hdf5 NETCDF_C_HDF5) |
|---|
| 436 | #NETCDF_CONFIG(--has-pnetcdf NETCDF_C_PARALLEL) |
|---|
| 437 | list(APPEND NETCDF_INCLUDE_HINTS "\${NETCDF_C_INCLUDE}") |
|---|
| 438 | list(APPEND NETCDF_HINTS "\${NETCDF_C_ROOT}") |
|---|
| 439 | message(STATUS "Found \${NETCDF_C_VERSION} compiled with \${NETCDF_C_COMPILER_C}") |
|---|
| 440 | else(NETCDF_C_CONFIG_EXECUTABLE) |
|---|
| 441 | message(STATUS "nc-config not found") |
|---|
| 442 | endif(NETCDF_C_CONFIG_EXECUTABLE) |
|---|
| 443 | |
|---|
| 444 | if(NETCDF_C_ROOT AND NETCDF_FORTRAN_ROOT) |
|---|
| 445 | find_program(NETCDF_FORTRAN_CONFIG_EXECUTABLE NAMES nf-config |
|---|
| 446 | HINTS \${NETCDF_HINTS} PATH_SUFFIXES bin Bin NO_DEFAULT_PATH |
|---|
| 447 | DOC "NETCDF CONFIG PROGRAM. Used to detect NETCDF compile flags." ) |
|---|
| 448 | else() |
|---|
| 449 | find_program(NETCDF_FORTRAN_CONFIG_EXECUTABLE NAMES nf-config |
|---|
| 450 | HINTS \${NETCDF_HINTS} PATH_SUFFIXES bin Bin |
|---|
| 451 | DOC "NETCDF CONFIG PROGRAM. Used to detect NETCDF compile flags." ) |
|---|
| 452 | endif() |
|---|
| 453 | |
|---|
| 454 | set(NETCDF_CONFIG_EXECUTABLE \${NETCDF_FORTRAN_CONFIG_EXECUTABLE}) |
|---|
| 455 | if(NETCDF_FORTRAN_CONFIG_EXECUTABLE) |
|---|
| 456 | NETCDF_CONFIG(--cc NETCDF_FORTRAN_COMPILER_C) |
|---|
| 457 | NETCDF_CONFIG(--fc NETCDF_FORTRAN_COMPILER_FORTRAN) |
|---|
| 458 | NETCDF_CONFIG(--prefix NETCDF_FORTRAN_ROOT) |
|---|
| 459 | NETCDF_CONFIG(--includedir NETCDF_FORTRAN_INCLUDE) |
|---|
| 460 | NETCDF_CONFIG(--version NETCDF_FORTRAN_VERSION) |
|---|
| 461 | #NETCDF_CONFIG(--has-c++ NETCDF_FORTRAN_CXX) |
|---|
| 462 | #NETCDF_CONFIG(--has-f77 NETCDF_FORTRAN_F77) |
|---|
| 463 | NETCDF_CONFIG(--has-f90 NETCDF_FORTRAN_F90) |
|---|
| 464 | #NETCDF_CONFIG(--has-dap NETCDF_FORTRAN_DAP) |
|---|
| 465 | #NETCDF_CONFIG(--has-nc2 NETCDF_FORTRAN_NC2) |
|---|
| 466 | #NETCDF_CONFIG(--has-nc4 NETCDF_FORTRAN_NC4) |
|---|
| 467 | #NETCDF_CONFIG(--has-hdf4 NETCDF_FORTRAN_HDF4) |
|---|
| 468 | #NETCDF_CONFIG(--has-hdf5 NETCDF_FORTRAN_HDF5) |
|---|
| 469 | #NETCDF_CONFIG(--has-pnetcdf NETCDF_FORTRAN_PARALLEL) |
|---|
| 470 | list(APPEND NETCDF_INCLUDE_HINTS "\${NETCDF_FORTRAN_INCLUDE}") |
|---|
| 471 | list(APPEND NETCDF_HINTS "\${NETCDF_FORTRAN_ROOT}") |
|---|
| 472 | message(STATUS "Found \${NETCDF_FORTRAN_VERSION} compiled with \${NETCDF_FORTRAN_COMPILER_FORTRAN}") |
|---|
| 473 | else(NETCDF_FORTRAN_CONFIG_EXECUTABLE) |
|---|
| 474 | #message(STATUS "nf-config not found") |
|---|
| 475 | set(NETCDF_FORTRAN_COMPILER_C \${NETCDF_C_COMPILER_C}) |
|---|
| 476 | set(NETCDF_FORTRAN_COMPILER_FORTRAN \${NETCDF_C_COMPILER_FORTRAN}) |
|---|
| 477 | set(NETCDF_FORTRAN_ROOT \${NETCDF_C_ROOT}) |
|---|
| 478 | set(NETCDF_FORTRAN_INCLUDE \${NETCDF_C_INCLUDE}) |
|---|
| 479 | set(NETCDF_FORTRAN_VERSION \${NETCDF_C_VERSION}) |
|---|
| 480 | #set(NETCDF_FORTRAN_CXX \${NETCDF_C_CXX}) |
|---|
| 481 | #set(NETCDF_FORTRAN_F77 \${NETCDF_C_F77}) |
|---|
| 482 | set(NETCDF_FORTRAN_F90 \${NETCDF_C_F90}) |
|---|
| 483 | #set(NETCDF_FORTRAN_DAP \${NETCDF_C_DAP}) |
|---|
| 484 | #set(NETCDF_FORTRAN_NC2 \${NETCDF_C_NC2}) |
|---|
| 485 | #set(NETCDF_FORTRAN_NC4 \${NETCDF_C_NC4}) |
|---|
| 486 | #set(NETCDF_FORTRAN_HDF4 \${NETCDF_C_HDF4}) |
|---|
| 487 | #set(NETCDF_FORTRAN_HDF5 \${NETCDF_C_HDF5}) |
|---|
| 488 | #set(NETCDF_FORTRAN_PARALLEL \${NETCDF_C_PARALLEL}) |
|---|
| 489 | if(NETCDF_FORTRAN_F90) |
|---|
| 490 | message(STATUS "Found \${NETCDF_FORTRAN_VERSION} compiled with \${NETCDF_FORTRAN_COMPILER_FORTRAN}") |
|---|
| 491 | else(NETCDF_FORTRAN_F90) |
|---|
| 492 | message(STATUS "nc-config found no netCDF Fortran libraries") |
|---|
| 493 | endif(NETCDF_FORTRAN_F90) |
|---|
| 494 | endif(NETCDF_FORTRAN_CONFIG_EXECUTABLE) |
|---|
| 495 | |
|---|
| 496 | # find netcdf c |
|---|
| 497 | if(NOT NETCDF_C_INCLUDE) |
|---|
| 498 | find_path(NETCDF_C_INCLUDE netcdf.h HINTS \${NETCDF_HINTS} PATH_SUFFIXES include Include) |
|---|
| 499 | endif() |
|---|
| 500 | find_library(NETCDF_C_LIB netcdf HINTS \${NETCDF_HINTS} PATH_SUFFIXES lib lib64) |
|---|
| 501 | #message(STATUS "NETCDF_C_INCLUDE so far: \${NETCDF_C_INCLUDE}") |
|---|
| 502 | #message(STATUS "NETCDF_C_LIB so far: \${NETCDF_C_LIB}") |
|---|
| 503 | |
|---|
| 504 | # find netcdf fortran |
|---|
| 505 | if(NOT NETCDF_FORTRAN_INCLUDE) |
|---|
| 506 | find_path(NETCDF_FORTRAN_INCLUDE netcdf.mod HINTS \${NETCDF_HINTS} PATH_SUFFIXES include Include) |
|---|
| 507 | endif() |
|---|
| 508 | find_library(NETCDF_FORTRAN_LIB netcdff HINTS \${NETCDF_HINTS} PATH_SUFFIXES lib lib64) |
|---|
| 509 | if(NOT NETCDF_FORTRAN_LIB) |
|---|
| 510 | find_library(NETCDF_FORTRAN_LIB netcdf HINTS \${NETCDF_HINTS} PATH_SUFFIXES lib lib64) |
|---|
| 511 | endif() |
|---|
| 512 | #message(STATUS "NETCDF_FORTRAN_INCLUDE so far: \${NETCDF_FORTRAN_INCLUDE}") |
|---|
| 513 | #message(STATUS "NETCDF_FORTRAN_LIB so far: \${NETCDF_FORTRAN_LIB}") |
|---|
| 514 | |
|---|
| 515 | if ((NOT NETCDF_C_LIB) OR (NOT NETCDF_C_INCLUDE)) |
|---|
| 516 | message(STATUS "Trying to find NetCDF using LD_LIBRARY_PATH (we're desperate)...") |
|---|
| 517 | file(TO_CMAKE_PATH "\$ENV{LD_LIBRARY_PATH}" LD_LIBRARY_PATH) |
|---|
| 518 | find_library(NETCDF_C_LIB NAMES netcdf HINTS \${LD_LIBRARY_PATH}) |
|---|
| 519 | |
|---|
| 520 | if (NETCDF_C_LIB) |
|---|
| 521 | get_filename_component(NETCDF_LIB_DIR \${NETCDF_C_LIB} PATH) |
|---|
| 522 | string(REGEX REPLACE "/lib/?\$" "/include" NETCDF_H_HINT \${NETCDF_LIB_DIR}) |
|---|
| 523 | find_path (NETCDF_C_INCLUDE netcdf.h HINTS \${NETCDF_H_HINT} DOC "Path to netcdf.h") |
|---|
| 524 | message(STATUS "found netcdf.h in: \${NETCDF_C_INCLUDE}") |
|---|
| 525 | list(APPEND NETCDF_INCLUDE_HINTS "\${NETCDF_C_INCLUDE}") |
|---|
| 526 | endif() |
|---|
| 527 | endif() |
|---|
| 528 | |
|---|
| 529 | get_filename_component (NETCDF_C_LIB_DIR "\${NETCDF_C_LIB}" PATH) |
|---|
| 530 | get_filename_component (NETCDF_FORTRAN_LIB_DIR "\${NETCDF_FORTRAN_LIB}" PATH) |
|---|
| 531 | list(APPEND NETCDF_LIB_HINTS "\${NETCDF_C_LIB_DIR}") |
|---|
| 532 | list(APPEND NETCDF_LIB_HINTS "\${NETCDF_FORTRAN_LIB_DIR}") |
|---|
| 533 | |
|---|
| 534 | #message(STATUS "All include Hints: \${NETCDF_INCLUDE_HINTS}") |
|---|
| 535 | #message(STATUS "All lib Hints: \${NETCDF_LIB_HINTS}") |
|---|
| 536 | |
|---|
| 537 | macro(NetCDF_add_interface lang) |
|---|
| 538 | if(NETCDF_\${lang}) |
|---|
| 539 | if(NETCDF_\${lang}_INCLUDE AND NETCDF_\${lang}_LIB) |
|---|
| 540 | list(INSERT NetCDF_includes 0 \${NETCDF_\${lang}_INCLUDE}) |
|---|
| 541 | list(INSERT NetCDF_libs 0 \${NETCDF_\${lang}_LIB}) # prepend so that -lnetcdf is last |
|---|
| 542 | else() |
|---|
| 543 | set(NetCDF_has_interfaces "NO") |
|---|
| 544 | message(STATUS "Failed to find NetCDF interface for \${lang}") |
|---|
| 545 | endif() |
|---|
| 546 | endif(NETCDF_\${lang}) |
|---|
| 547 | endmacro(NetCDF_add_interface) |
|---|
| 548 | |
|---|
| 549 | set(NetCDF_has_interfaces "YES") # will be set to NO if we're missing any interfaces |
|---|
| 550 | NetCDF_add_interface(C) |
|---|
| 551 | NetCDF_add_interface(CXX) |
|---|
| 552 | NetCDF_add_interface(FORTRAN) |
|---|
| 553 | |
|---|
| 554 | # macro (NetCDF_check_interface lang header libs) |
|---|
| 555 | # if (NETCDF_\${lang}) |
|---|
| 556 | # find_path (NETCDF_INCLUDES_\${lang} NAMES \${header} HINTS \${NETCDF_HINTS} PATH_SUFFIXES include Include NO_DEFAULT_PATH) |
|---|
| 557 | # find_library (NETCDF_LIBRARIES_\${lang} NAMES \${libs} HINTS \${NETCDF_HINTS} PATH_SUFFIXES lib lib64 NO_DEFAULT_PATH) |
|---|
| 558 | # mark_as_advanced (NETCDF_INCLUDES_\${lang} NETCDF_LIBRARIES_\${lang}) |
|---|
| 559 | # if (NETCDF_INCLUDES_\${lang} AND NETCDF_LIBRARIES_\${lang}) |
|---|
| 560 | # list (INSERT NetCDF_libs 0 \${NETCDF_LIBRARIES_\${lang}}) # prepend so that -lnetcdf is last |
|---|
| 561 | # else (NETCDF_INCLUDES_\${lang} AND NETCDF_LIBRARIES_\${lang}) |
|---|
| 562 | # set (NetCDF_has_interfaces "NO") |
|---|
| 563 | # message (STATUS "Failed to find NetCDF interface for \${lang}") |
|---|
| 564 | # endif (NETCDF_INCLUDES_\${lang} AND NETCDF_LIBRARIES_\${lang}) |
|---|
| 565 | # endif (NETCDF_\${lang}) |
|---|
| 566 | # endmacro (NetCDF_check_interface) |
|---|
| 567 | # |
|---|
| 568 | # set (NetCDF_has_interfaces "YES") # will be set to NO if we're missing any interfaces |
|---|
| 569 | # NetCDF_check_interface (C netcdf.h netcdf) |
|---|
| 570 | # NetCDF_check_interface (CXX netcdfcpp.h netcdf_c++) |
|---|
| 571 | # NetCDF_check_interface (FORTRAN netcdf.mod netcdff) |
|---|
| 572 | |
|---|
| 573 | set (NETCDF_C_COMPILER "\${NETCDF_C_COMPILER_C}" CACHE STRING "The C compiler used to build netCDF") |
|---|
| 574 | set (NETCDF_FORTRAN_COMPILER "\${NETCDF_FORTRAN_COMPILER_FORTRAN}" CACHE STRING "The Fortran compiler used to build netCDF") |
|---|
| 575 | set (NETCDF_INCLUDES "\${NetCDF_includes}" CACHE STRING "All NetCDF includes required for interface level") |
|---|
| 576 | set (NETCDF_LIBRARIES "\${NetCDF_libs}" CACHE STRING "All NetCDF libraries required for interface level") |
|---|
| 577 | |
|---|
| 578 | # handle the QUIETLY and REQUIRED arguments and set NETCDF_FOUND to TRUE if |
|---|
| 579 | # all listed variables are TRUE |
|---|
| 580 | include (FindPackageHandleStandardArgs) |
|---|
| 581 | find_package_handle_standard_args (NetCDF DEFAULT_MSG NETCDF_LIBRARIES NETCDF_INCLUDES NetCDF_has_interfaces) |
|---|
| 582 | |
|---|
| 583 | mark_as_advanced (NETCDF_LIBRARIES NETCDF_INCLUDES) |
|---|
| 584 | |
|---|
| 585 | #message(STATUS "netCDF library: \${NETCDF_LIBRARIES}") |
|---|
| 586 | #message(STATUS "netCDF include: \${NETCDF_INCLUDES}") |
|---|
| 587 | |
|---|
| 588 | EOF |
|---|
| [3628] | 589 | |
|---|
| 590 | cat > ${source_dir}/.palmtest.yml.in << EOF |
|---|
| 591 | --- |
|---|
| 592 | # this is a palmtest environments file |
|---|
| 593 | |
|---|
| 594 | palm_config_template: |
|---|
| 595 | |
|---|
| 596 | environments: |
|---|
| 597 | |
|---|
| 598 | @CMAKE_Fortran_COMPILER_ID@: |
|---|
| 599 | executable: @CMAKE_Fortran_COMPILER@ |
|---|
| 600 | mpi_wrapper: @MPI_Fortran_COMPILER@ |
|---|
| 601 | include: |
|---|
| 602 | @PALMTEST_NETCDF_INCLUDES@ |
|---|
| 603 | @PALMTEST_FFTW_INCLUDES@ |
|---|
| 604 | @PALMTEST_RRTMG_INCLUDES@ |
|---|
| 605 | lib: |
|---|
| 606 | @PALMTEST_NETCDF_LIBRARIES@ |
|---|
| 607 | @PALMTEST_FFTW_LIBRARIES@ |
|---|
| 608 | @PALMTEST_RRTMG_LIBRARIES@ |
|---|
| 609 | |
|---|
| 610 | EOF |
|---|
| 611 | |
|---|
| 612 | cat > ${source_dir}/build_rrtmg.in << EOF |
|---|
| 613 | #!/usr/bin/env bash |
|---|
| 614 | |
|---|
| 615 | make -f Makefile F90=@MPI_Fortran_COMPILER@ PROG=librrtmg F90FLAGS="@PALM_COMPILER_OPTIONS@" |
|---|
| 616 | |
|---|
| 617 | EOF |
|---|
| 618 | |
|---|
| 619 | |
|---|
| [2774] | 620 | } |
|---|
| 621 | |
|---|
| 622 | ################################################################################ |
|---|
| 623 | |
|---|
| 624 | palm_installer_build |
|---|
| 625 | palm_installer_set_path |
|---|
| 626 | palm_installer_test_suite |
|---|
| 627 | palm_post_installer_help |
|---|
