| [5] | 1 | <!DOCTYPE html PUBLIC "-//w3c//dtd html 4.0 transitional//en"> |
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| 2 | <html><head> |
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| [392] | 3 | |
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| [481] | 4 | |
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| 5 | |
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| [392] | 6 | <meta content="text/html; charset=ISO-8859-1" http-equiv="Content-Type"> <meta content="Mozilla/4.73 [en] (X11; U; HP-UX B.10.20 9000/782) [Netscape]" name="GENERATOR"> <meta content="Siegfried Raasch" name="Author"> <meta content="parallel LES model" name="Keywords"><title>PALM technical/numerical documentation</title></head><body><font size="+4">PALM |
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| [5] | 7 | </font>a |
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| 8 | <b>pa</b>rallelized |
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| 9 | <b>L</b>ES <b>m</b>odel |
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| [62] | 10 | <br><hr width="100%"> |
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| 11 | <br><font size="+2">technical/numerical documentation</font> |
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| 12 | <br> |
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| 13 | <br> |
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| 14 | <br><table nosave="" cellpadding="0" cellspacing="0"> <caption> <br> </caption><tbody> |
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| [481] | 15 | </tbody><tbody> </tbody> <tbody> <tr nosave=""> <td nosave=""><b>Current fixed release:</b></td> <td><span style="font-weight: bold;">3.7<br> |
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| 16 | </span></td> </tr> |
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| [62] | 17 | <tr nosave=""> <td nosave=""><b>Last |
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| 18 | change of this document</b>: </td> <td nosave=""><b>$Id: technical_documentation.html 481 2010-02-05 03:52:33Z raasch $</b></td> </tr> |
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| 19 | </tbody> |
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| 20 | </table><hr width="100%"> |
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| [5] | 21 | <p><font size="+2">Table of contents</font> |
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| [62] | 22 | <br> |
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| 23 | <br> |
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| 24 | </p><ul> <a href="#Kapitel1.0">1.0</a> |
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| 25 | History of changes <p><a href="#Kapitel2.0">2.0</a> |
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| 26 | How to change the model source |
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| 27 | code </p> <p><a href="#Kapitel3.0">3.0</a> |
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| [481] | 28 | Description of selected model numerics<br> |
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| [5] | 29 | </p> |
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| [392] | 30 | </ul><b></b><br> |
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| 31 | |
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| [62] | 32 | <h2><a name="Kapitel1.0"></a>1.0 |
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| 33 | History of changes</h2> |
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| [481] | 34 | The following table documents all changes to the PALM repository since 2009. Older changes can be found <a href="tec_doc_1998-2008.html">here</a>.<br> |
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| 35 | <br> |
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| 36 | Entries in the fourth column specify the type of the change: |
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| [5] | 37 | change |
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| 38 | of existing code (C), new code (N) or bugfix (B). More detailed |
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| 39 | information |
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| [481] | 40 | about the changes may sometimes be found in the header comment lines of the |
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| [5] | 41 | respective |
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| 42 | routines. |
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| [62] | 43 | <br> |
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| 44 | <br> |
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| [481] | 45 | <table style="text-align: left; width: 100%; vertical-align: top;" border="1" cellpadding="2" cellspacing="2"> |
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| 46 | <tbody> |
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| 47 | <tr> |
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| 48 | <td style="vertical-align: bottom; width: 27px;"><big><span style="font-weight: bold;">date</span></big><br> |
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| 49 | <br> |
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| [392] | 50 | </td> |
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| [481] | 51 | <td style="width: 38px;"><big><span style="font-weight: bold;">author</span></big><br> |
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| [392] | 52 | </td> |
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| [481] | 53 | <td style="width: 42px;"><big><span style="font-weight: bold;">svn revision</span></big><br> |
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| [392] | 54 | </td> |
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| [481] | 55 | <td style="width: 40px;"><big><span style="font-weight: bold;">latest release</span></big><br> |
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| [392] | 56 | </td> |
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| [481] | 57 | <td style="width: 27px;"><big><span style="font-weight: bold;">type</span></big><br> |
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| 58 | </td> |
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| 59 | <td style="width: 497px;"><big><span style="font-weight: bold;">description</span></big><br> |
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| 60 | </td> |
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| 61 | <td style="width: 189px;"><big><span style="font-weight: bold;">affected routines</span></big><br> |
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| 62 | </td> |
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| 63 | </tr> |
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| 64 | <tr> |
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| 65 | <td style="vertical-align: top; width: 27px;"><br> |
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| 66 | </td> |
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| 67 | <td style="vertical-align: top; width: 38px;"><br> |
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| 68 | </td> |
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| 69 | <td style="vertical-align: top; width: 42px;"><br> |
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| 70 | </td> |
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| 71 | <td style="vertical-align: top; width: 40px;"><br> |
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| 72 | </td> |
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| 73 | <td style="vertical-align: top; width: 27px;"><br> |
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| 74 | </td> |
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| 75 | <td style="vertical-align: top; width: 497px;"><br> |
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| 76 | </td> |
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| 77 | <td style="vertical-align: top; width: 189px;"><br> |
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| 78 | </td> |
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| 79 | </tr> |
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| 80 | <tr> |
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| 81 | <td style="vertical-align: top; width: 27px;"><br> |
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| 82 | </td> |
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| 83 | <td style="vertical-align: top; width: 38px;"><br> |
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| 84 | </td> |
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| 85 | <td style="vertical-align: top; width: 42px;"><br> |
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| 86 | </td> |
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| 87 | <td style="vertical-align: top; width: 40px;"><br> |
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| 88 | </td> |
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| 89 | <td style="vertical-align: top; width: 27px;"><br> |
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| 90 | </td> |
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| 91 | <td style="vertical-align: top; width: 497px;"><br> |
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| 92 | </td> |
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| 93 | <td style="vertical-align: top; width: 189px;"><br> |
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| 94 | </td> |
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| 95 | </tr> |
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| 96 | <tr> |
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| 97 | <td style="vertical-align: top; width: 27px;"><br> |
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| 98 | </td> |
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| 99 | <td style="vertical-align: top; width: 38px;"><br> |
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| 100 | </td> |
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| 101 | <td style="vertical-align: top; width: 42px;"><br> |
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| 102 | </td> |
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| 103 | <td style="vertical-align: top; width: 40px;"><br> |
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| 104 | </td> |
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| 105 | <td style="vertical-align: top; width: 27px;"><br> |
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| 106 | </td> |
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| 107 | <td style="vertical-align: top; width: 497px;"><br> |
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| 108 | </td> |
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| 109 | <td style="vertical-align: top; width: 189px;"><br> |
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| 110 | </td> |
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| 111 | </tr> |
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| 112 | <tr> |
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| 113 | <td style="vertical-align: top; width: 27px;"><br> |
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| 114 | </td> |
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| 115 | <td style="vertical-align: top; width: 38px;"><br> |
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| 116 | </td> |
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| 117 | <td style="vertical-align: top; width: 42px;"><br> |
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| 118 | </td> |
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| 119 | <td style="vertical-align: top; width: 40px;"><br> |
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| 120 | </td> |
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| 121 | <td style="vertical-align: top; width: 27px;"><br> |
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| 122 | </td> |
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| 123 | <td style="vertical-align: top; width: 497px;"><br> |
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| 124 | </td> |
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| 125 | <td style="vertical-align: top; width: 189px;"><br> |
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| 126 | </td> |
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| 127 | </tr> |
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| 128 | <tr> |
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| 129 | <td style="vertical-align: top; width: 27px;"><br> |
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| 130 | </td> |
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| 131 | <td style="vertical-align: top; width: 38px;"><br> |
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| 132 | </td> |
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| 133 | <td style="vertical-align: top; width: 42px;"><br> |
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| 134 | </td> |
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| 135 | <td style="vertical-align: top; width: 40px;"><br> |
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| 136 | </td> |
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| 137 | <td style="vertical-align: top; width: 27px;"><br> |
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| 138 | </td> |
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| 139 | <td style="vertical-align: top; width: 497px;"><br> |
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| 140 | </td> |
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| 141 | <td style="vertical-align: top; width: 189px;"><br> |
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| 142 | </td> |
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| 143 | </tr> |
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| 144 | <tr> |
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| 145 | <td style="vertical-align: top; width: 27px;"><br> |
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| 146 | </td> |
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| 147 | <td style="vertical-align: top; width: 38px;"><br> |
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| 148 | </td> |
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| 149 | <td style="vertical-align: top; width: 42px;"><br> |
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| 150 | </td> |
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| 151 | <td style="vertical-align: top; width: 40px;"><br> |
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| 152 | </td> |
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| 153 | <td style="vertical-align: top; width: 27px;"><br> |
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| 154 | </td> |
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| 155 | <td style="vertical-align: top; width: 497px;"><br> |
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| 156 | </td> |
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| 157 | <td style="vertical-align: top; width: 189px;"><br> |
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| 158 | </td> |
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| 159 | </tr> |
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| 160 | <tr> |
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| 161 | <td style="vertical-align: top; width: 27px;"><br> |
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| 162 | </td> |
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| 163 | <td style="vertical-align: top; width: 38px;"><br> |
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| 164 | </td> |
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| 165 | <td style="vertical-align: top; width: 42px;"><br> |
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| 166 | </td> |
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| 167 | <td style="vertical-align: top; width: 40px;"><br> |
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| 168 | </td> |
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| 169 | <td style="vertical-align: top; width: 27px;"><br> |
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| 170 | </td> |
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| 171 | <td style="vertical-align: top; width: 497px;"><br> |
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| 172 | </td> |
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| 173 | <td style="vertical-align: top; width: 189px;"><br> |
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| 174 | </td> |
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| 175 | </tr> |
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| 176 | <tr> |
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| 177 | <td style="vertical-align: top; width: 27px;"><br> |
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| 178 | </td> |
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| 179 | <td style="vertical-align: top; width: 38px;"><br> |
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| 180 | </td> |
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| 181 | <td style="vertical-align: top; width: 42px;"><br> |
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| 182 | </td> |
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| 183 | <td style="vertical-align: top; width: 40px;"><br> |
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| 184 | </td> |
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| 185 | <td style="vertical-align: top; width: 27px;"><br> |
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| 186 | </td> |
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| 187 | <td style="vertical-align: top; width: 497px;"><br> |
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| 188 | </td> |
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| 189 | <td style="vertical-align: top; width: 189px;"><br> |
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| 190 | </td> |
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| 191 | </tr> |
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| 192 | <tr> |
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| 193 | <td style="vertical-align: top; width: 27px;"><br> |
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| 194 | </td> |
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| 195 | <td style="vertical-align: top; width: 38px;"><br> |
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| 196 | </td> |
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| 197 | <td style="vertical-align: top; width: 42px;"><br> |
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| 198 | </td> |
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| 199 | <td style="vertical-align: top; width: 40px;"><br> |
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| 200 | </td> |
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| 201 | <td style="vertical-align: top; width: 27px;"><br> |
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| 202 | </td> |
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| 203 | <td style="vertical-align: top; width: 497px;"><br> |
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| 204 | </td> |
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| 205 | <td style="vertical-align: top; width: 189px;"><br> |
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| 206 | </td> |
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| 207 | </tr> |
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| 208 | <tr> |
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| 209 | <td style="vertical-align: top; width: 27px;"><br> |
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| 210 | </td> |
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| 211 | <td style="vertical-align: top; width: 38px;"><br> |
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| 212 | </td> |
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| 213 | <td style="vertical-align: top; width: 42px;"><br> |
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| 214 | </td> |
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| 215 | <td style="vertical-align: top; width: 40px;"><br> |
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| 216 | </td> |
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| 217 | <td style="vertical-align: top; width: 27px;"><br> |
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| 218 | </td> |
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| 219 | <td style="vertical-align: top; width: 497px;"><br> |
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| 220 | </td> |
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| 221 | <td style="vertical-align: top; width: 189px;"><br> |
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| 222 | </td> |
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| 223 | </tr> |
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| 224 | <tr> |
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| 225 | <td style="vertical-align: top; width: 27px;"><br> |
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| 226 | </td> |
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| 227 | <td style="vertical-align: top; width: 38px;"><br> |
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| 228 | </td> |
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| 229 | <td style="vertical-align: top; width: 42px;"><br> |
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| 230 | </td> |
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| 231 | <td style="vertical-align: top; width: 40px;"><br> |
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| 232 | </td> |
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| 233 | <td style="vertical-align: top; width: 27px;"><br> |
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| 234 | </td> |
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| 235 | <td style="vertical-align: top; width: 497px;"><br> |
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| 236 | </td> |
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| 237 | <td style="vertical-align: top; width: 189px;"><br> |
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| 238 | </td> |
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| 239 | </tr> |
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| 240 | <tr> |
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| 241 | <td style="vertical-align: top; width: 27px;"><br> |
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| 242 | </td> |
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| 243 | <td style="vertical-align: top; width: 38px;"><br> |
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| 244 | </td> |
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| 245 | <td style="vertical-align: top; width: 42px;"><br> |
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| 246 | </td> |
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| 247 | <td style="vertical-align: top; width: 40px;"><br> |
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| 248 | </td> |
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| 249 | <td style="vertical-align: top; width: 27px;"><br> |
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| 250 | </td> |
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| 251 | <td style="vertical-align: top; width: 497px;"><br> |
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| 252 | </td> |
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| 253 | <td style="vertical-align: top; width: 189px;"><br> |
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| 254 | </td> |
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| 255 | </tr> |
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| 256 | <tr> |
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| 257 | <td style="vertical-align: top; width: 27px;"><br> |
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| 258 | </td> |
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| 259 | <td style="vertical-align: top; width: 38px;"><br> |
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| 260 | </td> |
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| 261 | <td style="vertical-align: top; width: 42px;"><br> |
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| 262 | </td> |
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| 263 | <td style="vertical-align: top; width: 40px;"><br> |
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| 264 | </td> |
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| 265 | <td style="vertical-align: top; width: 27px;"><br> |
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| 266 | </td> |
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| 267 | <td style="vertical-align: top; width: 497px;"><br> |
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| 268 | </td> |
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| 269 | <td style="vertical-align: top; width: 189px;"><br> |
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| 270 | </td> |
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| 271 | </tr> |
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| 272 | <tr> |
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| 273 | <td style="vertical-align: top; width: 27px;">23/09/09<br> |
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| 274 | </td> |
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| 275 | <td style="vertical-align: top; width: 38px;">SR<br> |
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| 276 | </td> |
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| 277 | <td style="vertical-align: top; width: 42px;">392<br> |
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| 278 | </td> |
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| 279 | <td style="vertical-align: top; width: 40px;">3.7<br> |
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| 280 | </td> |
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| 281 | <td style="vertical-align: top; width: 27px;">N<br> |
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| 282 | </td> |
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| 283 | <td style="vertical-align: top; width: 497px;"><span style="font-weight: bold;">Most |
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| 284 | important changes:</span> |
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| [392] | 285 | atmosphere-ocean coupling has been improved and steering of |
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| 286 | dvr-software is more user-friendly now. Beside that, the release |
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| 287 | contains a lot of optimizations, changes, and bugfixes which have |
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| 288 | accumulated over the last months.<br> |
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| [481] | 289 | |
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| [392] | 290 | <br> |
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| [481] | 291 | |
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| [392] | 292 | The atmosphere-ocean coupling allows to use independent precursor runs |
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| 293 | in order to account for different spin-up times. The time when coupling |
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| [481] | 294 | has to be started is given by new inipar parameter <span style="font-family: Courier New,Courier,monospace;">coupling_start_time</span>. |
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| 295 | The precursor ocean run has to be started using new <span style="font-weight: bold;">mrun</span> option "<span style="font-family: Courier New,Courier,monospace;">-y</span>" in |
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| 296 | order to add the appendix "<span style="font-family: Courier New,Courier,monospace;">_O</span>" to all |
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| 297 | output files. (<span style="font-family: Courier New,Courier,monospace;">check_for_restart</span>, |
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| 298 | <span style="font-family: Courier New,Courier,monospace;">check_parameters</span>, |
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| 299 | <span style="font-family: Courier New,Courier,monospace;">data_output_2d</span>, |
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| 300 | <span style="font-family: Courier New,Courier,monospace;">data_output_3d</span>, |
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| 301 | <span style="font-family: Courier New,Courier,monospace;">data_output_profiles</span>, |
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| 302 | <span style="font-family: Courier New,Courier,monospace;">data_output_ptseries</span>, |
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| 303 | <span style="font-family: Courier New,Courier,monospace;">data_output_spectra</span>, |
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| 304 | <span style="font-family: Courier New,Courier,monospace;">data_output_tseries</span>, |
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| 305 | <span style="font-family: Courier New,Courier,monospace;">header</span>, |
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| 306 | <span style="font-family: Courier New,Courier,monospace;">init_coupling</span>, |
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| 307 | <span style="font-family: Courier New,Courier,monospace;">modules</span>, |
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| 308 | <span style="font-family: Courier New,Courier,monospace;">mrun</span>, |
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| 309 | <span style="font-family: Courier New,Courier,monospace;">parin</span>, |
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| 310 | <span style="font-family: Courier New,Courier,monospace;">read_var_list</span>, |
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| 311 | <span style="font-family: Courier New,Courier,monospace;">surface_coupler</span>, |
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| 312 | <span style="font-family: Courier New,Courier,monospace;">time_integration</span>, |
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| 313 | <span style="font-family: Courier New,Courier,monospace;">write_var_list</span>)<br> |
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| [392] | 314 | |
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| 315 | <br> |
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| [481] | 316 | |
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| [392] | 317 | Clipping of dvrp output implemented. Default colourtable for particles |
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| 318 | implemented, particle attributes (color, dvrp_size) can be set with new |
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| [481] | 319 | parameters <span style="font-family: Courier New,Courier,monospace;">particle_color</span>, |
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| 320 | <span style="font-family: Courier New,Courier,monospace;">particle_dvrpsize</span>, |
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| 321 | <span style="font-family: Courier New,Courier,monospace;">color_interval</span>, |
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| 322 | <span style="font-family: Courier New,Courier,monospace;">dvrpsize_interval</span>. |
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| 323 | Slicer attributes (dvrp) are set with new routine <span style="font-family: Courier New,Courier,monospace;">set_slicer_attributes_dvrp</span> |
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| 324 | and are controlled with existing parameters <span style="font-family: Courier New,Courier,monospace;">slicer_range_limits</span>. |
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| 325 | (<span style="font-family: Courier New,Courier,monospace;">init_dvrp</span>, |
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| 326 | <span style="font-family: Courier New,Courier,monospace;">data_output_dvrp</span>, |
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| 327 | <span style="font-family: Courier New,Courier,monospace;">modules</span>, |
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| 328 | <span style="font-family: Courier New,Courier,monospace;">set_slicer_attributes_dvrp</span>, |
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| 329 | <span style="font-family: Courier New,Courier,monospace;">user_data_output_dvrp</span>)<br> |
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| [392] | 330 | |
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| 331 | <br> |
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| [481] | 332 | |
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| [392] | 333 | Polygon reduction for topography and ground plate isosurface. Reduction |
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| 334 | level for buildings can be chosen with parameter cluster_size. (<span style="font-family: Courier New,Courier,monospace;">init_dvrp</span>)<br> |
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| 335 | |
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| 336 | <br> |
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| 337 | |
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| [481] | 338 | Variables <span style="font-family: Courier New,Courier,monospace;">bc_lr</span> |
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| 339 | / <span style="font-family: Courier New,Courier,monospace;">bc_ns</span> |
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| 340 | in most subroutines replaced by LOGICAL variables <span style="font-family: Courier New,Courier,monospace;">bc_lr_cyc</span>,<br> |
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| 341 | |
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| 342 | <span style="font-family: Courier New,Courier,monospace;">bc_ns_cyc</span> |
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| 343 | for speed optimization. This gives a significant speedup of more than |
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| 344 | 10%. (<span style="font-family: Courier New,Courier,monospace;">check_parameters</span>, |
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| 345 | <span style="font-family: Courier New,Courier,monospace;">diffusion_u</span>, |
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| 346 | <span style="font-family: Courier New,Courier,monospace;">diffusion_v</span>, |
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| 347 | <span style="font-family: Courier New,Courier,monospace;">diffusion_w</span>, |
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| 348 | <span style="font-family: Courier New,Courier,monospace;">modules</span>)<br> |
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| 349 | |
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| [392] | 350 | <br> |
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| [481] | 351 | |
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| [392] | 352 | Scripts have been adapted for machine lck (Yonsei Univ.). (<span style="font-family: Courier New,Courier,monospace;">mrun</span>, <span style="font-family: Courier New,Courier,monospace;">mbuild</span>, <span style="font-family: Courier New,Courier,monospace;">subjob</span>)<br> |
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| [481] | 353 | |
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| [392] | 354 | <br> |
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| [481] | 355 | |
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| 356 | Additional timestep criterion in case of simulations with plant canopy. |
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| 357 | (<span style="font-family: Courier New,Courier,monospace;">timestep</span>)<br> |
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| 358 | |
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| [392] | 359 | <br> |
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| [481] | 360 | |
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| 361 | Check for illegal entries in <span style="font-family: Courier New,Courier,monospace;">section_xy</span>|<span style="font-family: Courier New,Courier,monospace;">xz</span>|<span style="font-family: Courier New,Courier,monospace;">yz</span> that |
|---|
| 362 | exceed <span style="font-family: Courier New,Courier,monospace;">nz+1</span>|<span style="font-family: Courier New,Courier,monospace;">ny+1</span>|<span style="font-family: Courier New,Courier,monospace;">nx+1</span>. (<span style="font-family: Courier New,Courier,monospace;">check_parameters</span>)<br> |
|---|
| 363 | |
|---|
| [392] | 364 | <br> |
|---|
| [481] | 365 | |
|---|
| 366 | External pressure gradient can be used as driving force. (<span style="font-family: Courier New,Courier,monospace;">check_parameters</span>, |
|---|
| 367 | <span style="font-family: Courier New,Courier,monospace;">header</span>, |
|---|
| 368 | <span style="font-family: Courier New,Courier,monospace;">init_3d_model</span>, |
|---|
| 369 | <span style="font-family: Courier New,Courier,monospace;">modules</span>, |
|---|
| 370 | <span style="font-family: Courier New,Courier,monospace;">parin</span>, |
|---|
| 371 | <span style="font-family: Courier New,Courier,monospace;">prognostic_equations</span>, |
|---|
| 372 | <span style="font-family: Courier New,Courier,monospace;">read_var_list</span>, |
|---|
| 373 | <span style="font-family: Courier New,Courier,monospace;">write_var_list</span>)<br> |
|---|
| 374 | |
|---|
| [392] | 375 | <br> |
|---|
| [481] | 376 | |
|---|
| 377 | New topography case '<span style="font-style: italic;">single_street_canyon</span>'. |
|---|
| 378 | (<span style="font-family: Courier New,Courier,monospace;">header</span>, |
|---|
| 379 | <span style="font-family: Courier New,Courier,monospace;">init_grid</span>, |
|---|
| 380 | <span style="font-family: Courier New,Courier,monospace;">modules</span>, |
|---|
| 381 | <span style="font-family: Courier New,Courier,monospace;">parin</span>, |
|---|
| 382 | <span style="font-family: Courier New,Courier,monospace;">read_var_list</span>, |
|---|
| 383 | <span style="font-family: Courier New,Courier,monospace;">user_check_parameters</span>, |
|---|
| 384 | <span style="font-family: Courier New,Courier,monospace;">user_header</span>, |
|---|
| 385 | <span style="font-family: Courier New,Courier,monospace;">user_init_grid</span>, |
|---|
| 386 | <span style="font-family: Courier New,Courier,monospace;">write_var_list</span>)<br> |
|---|
| 387 | |
|---|
| [392] | 388 | <br> |
|---|
| [481] | 389 | |
|---|
| 390 | Option to predefine a target bulk velocity for <span style="font-family: Courier New,Courier,monospace;">conserve_volume_flow</span>. |
|---|
| 391 | (<span style="font-family: Courier New,Courier,monospace;">check_parameters</span>, |
|---|
| 392 | <span style="font-family: Courier New,Courier,monospace;">header</span>, |
|---|
| 393 | <span style="font-family: Courier New,Courier,monospace;">init_3d_model</span>, |
|---|
| 394 | <span style="font-family: Courier New,Courier,monospace;">modules</span>, |
|---|
| 395 | <span style="font-family: Courier New,Courier,monospace;">parin</span>, |
|---|
| 396 | <span style="font-family: Courier New,Courier,monospace;">read_var_list</span>, |
|---|
| 397 | <span style="font-family: Courier New,Courier,monospace;">write_var_list</span>)<br> |
|---|
| 398 | |
|---|
| [392] | 399 | <br> |
|---|
| [481] | 400 | |
|---|
| 401 | Option for user defined 2D data output in xy cross sections at z=<span style="font-family: Courier New,Courier,monospace;">nzb</span>+1. (<span style="font-family: Courier New,Courier,monospace;">data_output_2d</span>, |
|---|
| 402 | <span style="font-family: Courier New,Courier,monospace;">user_data_output_2d</span>)<br> |
|---|
| 403 | |
|---|
| [392] | 404 | <br> |
|---|
| [481] | 405 | |
|---|
| 406 | xy cross section output of surface heatfluxes (sensible and latent). (<span style="font-family: Courier New,Courier,monospace;">average_3d_data</span>, |
|---|
| 407 | <span style="font-family: Courier New,Courier,monospace;">check_parameters</span>, |
|---|
| 408 | <span style="font-family: Courier New,Courier,monospace;">data_output_2d</span>, |
|---|
| 409 | <span style="font-family: Courier New,Courier,monospace;">modules</span>, |
|---|
| 410 | <span style="font-family: Courier New,Courier,monospace;">read_3d_binary</span>, |
|---|
| 411 | <span style="font-family: Courier New,Courier,monospace;">sum_up_3d_data</span>, |
|---|
| 412 | <span style="font-family: Courier New,Courier,monospace;">write_3d_binary</span>)</td> |
|---|
| 413 | <td style="vertical-align: top; width: 189px;">average_3d_data, |
|---|
| [392] | 414 | check_for_restart, check_parameters, data_output_2d, data_output_3d, |
|---|
| 415 | data_output_dvrp, data_output_profiles, data_output_ptseries, |
|---|
| 416 | data_output_spectra, data_output_tseries, diffusion_u, diffusion_v, |
|---|
| 417 | diffusion_w, init_coupling, init_dvrp, init_grid, init_3d_model, |
|---|
| 418 | header, mbuild, modules, mrun, package_parin, parin, |
|---|
| 419 | prognostic_equations, read_3d_binary, read_var_list, subjob, |
|---|
| 420 | sum_up_3d_data, surface_coupler, timestep, time_integration, |
|---|
| 421 | user_check_parameters, user_data_output_2d, user_data_output_dvrp, |
|---|
| 422 | user_header, user_init_grid, write_3d_binary, write_var_list<br> |
|---|
| [481] | 423 | |
|---|
| [392] | 424 | <br> |
|---|
| [481] | 425 | |
|---|
| 426 | <span style="font-weight: bold;">new:</span> |
|---|
| 427 | set_particle_attributes, set_slicer_attributes_dvrp</td> |
|---|
| [392] | 428 | </tr> |
|---|
| 429 | <tr> |
|---|
| [481] | 430 | <td style="vertical-align: top; width: 27px;"><br> |
|---|
| [392] | 431 | </td> |
|---|
| [481] | 432 | <td style="vertical-align: top; width: 38px;"><br> |
|---|
| [392] | 433 | </td> |
|---|
| [481] | 434 | <td style="vertical-align: top; width: 42px;"><br> |
|---|
| [392] | 435 | </td> |
|---|
| [481] | 436 | <td style="vertical-align: top; width: 40px;"><br> |
|---|
| [392] | 437 | </td> |
|---|
| [481] | 438 | <td style="vertical-align: top; width: 27px;">C<br> |
|---|
| 439 | </td> |
|---|
| 440 | <td style="vertical-align: top; width: 497px;">Output of messages replaced by |
|---|
| 441 | message handling routine. (<span style="font-family: Courier New,Courier,monospace;">advec_particles</span>, |
|---|
| 442 | <span style="font-family: Courier New,Courier,monospace;">advec_s_bc</span>, |
|---|
| 443 | <span style="font-family: Courier New,Courier,monospace;">buoyancy</span>, |
|---|
| 444 | <span style="font-family: Courier New,Courier,monospace;">calc_spectra</span>, |
|---|
| 445 | <span style="font-family: Courier New,Courier,monospace;">check_for_restart</span>, |
|---|
| 446 | <span style="font-family: Courier New,Courier,monospace;">check_open</span>, |
|---|
| 447 | <span style="font-family: Courier New,Courier,monospace;">coriolis</span>, |
|---|
| 448 | <span style="font-family: Courier New,Courier,monospace;">cpu_log</span>, |
|---|
| 449 | <span style="font-family: Courier New,Courier,monospace;">data_output_2d</span>, |
|---|
| 450 | <span style="font-family: Courier New,Courier,monospace;">data_output_3d</span>, |
|---|
| 451 | <span style="font-family: Courier New,Courier,monospace;">data_output_dvrp</span>, |
|---|
| 452 | <span style="font-family: Courier New,Courier,monospace;">data_output_profiles</span>, |
|---|
| 453 | <span style="font-family: Courier New,Courier,monospace;">data_output_spectra</span>, |
|---|
| 454 | <span style="font-family: Courier New,Courier,monospace;">fft_xy</span>, |
|---|
| 455 | <span style="font-family: Courier New,Courier,monospace;">flow_statistics</span>, |
|---|
| 456 | <span style="font-family: Courier New,Courier,monospace;">header</span>, |
|---|
| 457 | <span style="font-family: Courier New,Courier,monospace;">init_1d_model</span>, |
|---|
| 458 | <span style="font-family: Courier New,Courier,monospace;">init_3d_model</span>, |
|---|
| 459 | <span style="font-family: Courier New,Courier,monospace;">init_dvrp</span>, |
|---|
| 460 | <span style="font-family: Courier New,Courier,monospace;">init_grid</span>, |
|---|
| 461 | <span style="font-family: Courier New,Courier,monospace;">init_particles</span>, |
|---|
| 462 | <span style="font-family: Courier New,Courier,monospace;">init_pegrid</span>, |
|---|
| 463 | <span style="font-family: Courier New,Courier,monospace;">netcdf</span>, |
|---|
| 464 | <span style="font-family: Courier New,Courier,monospace;">parin</span>, |
|---|
| 465 | <span style="font-family: Courier New,Courier,monospace;">plant_canopy_model</span>, |
|---|
| 466 | <span style="font-family: Courier New,Courier,monospace;">poisfft_hybrid</span>, |
|---|
| 467 | <span style="font-family: Courier New,Courier,monospace;">poismg</span>, |
|---|
| 468 | <span style="font-family: Courier New,Courier,monospace;">read_3d_binary</span>, |
|---|
| 469 | <span style="font-family: Courier New,Courier,monospace;">read_var_list</span>, |
|---|
| 470 | <span style="font-family: Courier New,Courier,monospace;">surface_coupler</span>, |
|---|
| 471 | <span style="font-family: Courier New,Courier,monospace;">temperton_fft</span>, |
|---|
| 472 | <span style="font-family: Courier New,Courier,monospace;">timestep</span>, |
|---|
| 473 | <span style="font-family: Courier New,Courier,monospace;">user_actions</span>, |
|---|
| 474 | <span style="font-family: Courier New,Courier,monospace;">user_data_output_dvrp</span>, |
|---|
| 475 | <span style="font-family: Courier New,Courier,monospace;">user_dvrp_coltab</span>, |
|---|
| 476 | <span style="font-family: Courier New,Courier,monospace;">user_init_grid</span>, |
|---|
| 477 | <span style="font-family: Courier New,Courier,monospace;">user_init_plant_canopy</span>, |
|---|
| 478 | <span style="font-family: Courier New,Courier,monospace;">user_parin</span>, |
|---|
| 479 | <span style="font-family: Courier New,Courier,monospace;">user_read_restart_data</span>, |
|---|
| 480 | <span style="font-family: Courier New,Courier,monospace;">user_spectra</span>)<br> |
|---|
| [392] | 481 | |
|---|
| 482 | <br> |
|---|
| 483 | |
|---|
| [481] | 484 | Output of NetCDF messages with aid of message handling routine. (<span style="font-family: Courier New,Courier,monospace;">check_open</span>, |
|---|
| 485 | <span style="font-family: Courier New,Courier,monospace;">close_file</span>, |
|---|
| 486 | <span style="font-family: Courier New,Courier,monospace;">data_output_2d</span>, |
|---|
| 487 | <span style="font-family: Courier New,Courier,monospace;">data_output_3d</span>, |
|---|
| 488 | <span style="font-family: Courier New,Courier,monospace;">data_output_profiles</span>, |
|---|
| 489 | <span style="font-family: Courier New,Courier,monospace;">data_output_ptseries</span>, |
|---|
| 490 | <span style="font-family: Courier New,Courier,monospace;">data_output_spectra</span>, |
|---|
| 491 | <span style="font-family: Courier New,Courier,monospace;">data_output_tseries</span>, |
|---|
| 492 | <span style="font-family: Courier New,Courier,monospace;">netcdf</span><span style="font-family: Courier New,Courier,monospace;"></span>)<br> |
|---|
| 493 | |
|---|
| [392] | 494 | <br> |
|---|
| 495 | |
|---|
| [481] | 496 | __lcmuk changed to __lc to avoid problems with Intel compiler on |
|---|
| 497 | sgi-ice. (<span style="font-family: Courier New,Courier,monospace;">poisfft</span>)<br> |
|---|
| 498 | |
|---|
| [392] | 499 | <br> |
|---|
| [481] | 500 | |
|---|
| 501 | For extended NetCDF files, the updated title attribute includes an |
|---|
| 502 | update of time_average_text where appropriate. (<span style="font-family: Courier New,Courier,monospace;">netcdf</span>)<br> |
|---|
| 503 | |
|---|
| [392] | 504 | <br> |
|---|
| [481] | 505 | |
|---|
| [392] | 506 | In case of restart runs without extension, initial profiles are not |
|---|
| 507 | written to NetCDF-file anymore. So far, time axis always started at |
|---|
| [481] | 508 | t=0. (<span style="font-family: Courier New,Courier,monospace;">data_output_profiles</span>, |
|---|
| 509 | <span style="font-family: Courier New,Courier,monospace;">modules</span>, |
|---|
| 510 | <span style="font-family: Courier New,Courier,monospace;">read_var_list</span>, |
|---|
| 511 | <span style="font-family: Courier New,Courier,monospace;">write_var_list</span>)<br> |
|---|
| 512 | |
|---|
| [392] | 513 | <br> |
|---|
| [481] | 514 | |
|---|
| 515 | <span style="font-family: Courier New,Courier,monospace;">initializing_actions</span>='<span style="font-style: italic;">read_data_for_recycling</span>' renamed to |
|---|
| 516 | '<span style="font-style: italic;">cyclic_fill</span>'. A cyclic fill |
|---|
| 517 | can now <br> |
|---|
| 518 | |
|---|
| 519 | be used independent of <span style="font-family: Courier New,Courier,monospace;">turbulent_inflow</span>. |
|---|
| 520 | (<span style="font-family: Courier New,Courier,monospace;">check_parameters</span>, |
|---|
| 521 | <span style="font-family: Courier New,Courier,monospace;">header</span>, |
|---|
| 522 | <span style="font-family: Courier New,Courier,monospace;">init_3d_model</span>)<br> |
|---|
| 523 | |
|---|
| [392] | 524 | <br> |
|---|
| [481] | 525 | |
|---|
| [392] | 526 | 2 NetCDF error numbers changed. (<span style="font-family: Courier New,Courier,monospace;">data_output_3d</span>)<br> |
|---|
| [481] | 527 | |
|---|
| [392] | 528 | <br> |
|---|
| [481] | 529 | |
|---|
| [392] | 530 | A link to the webspage appendix_a.html is printed for further |
|---|
| 531 | information about possible reasons of the error that appeared. (message)<br> |
|---|
| [481] | 532 | |
|---|
| [392] | 533 | <br> |
|---|
| [481] | 534 | |
|---|
| [392] | 535 | Temperature gradient criterion for estimating the boundary layer height |
|---|
| 536 | replaced by the gradient criterion of Sullivan et al. (1998). (<span style="font-family: Courier New,Courier,monospace;">flow_statistics</span>)<br> |
|---|
| [481] | 537 | |
|---|
| [392] | 538 | <br> |
|---|
| [481] | 539 | |
|---|
| 540 | NetCDF unit attribute in timeseries output in case of statistic regions |
|---|
| 541 | added. (<span style="font-family: Courier New,Courier,monospace;">netcdf</span>)<br> |
|---|
| 542 | |
|---|
| [392] | 543 | <br> |
|---|
| [481] | 544 | |
|---|
| 545 | Maximum number of tails is calculated from maximum number of particles |
|---|
| 546 | and <span style="font-family: Courier New,Courier,monospace;">skip_particles_for_tail</span>. |
|---|
| 547 | (<span style="font-family: Courier New,Courier,monospace;">init_particles</span>)<br> |
|---|
| 548 | |
|---|
| [392] | 549 | <br> |
|---|
| [481] | 550 | |
|---|
| 551 | Value of <span style="font-family: Courier New,Courier,monospace;">vertical_particle_advection</span> |
|---|
| 552 | is allowed to differ for each particle group. (<span style="font-family: Courier New,Courier,monospace;">advec_particles</span>, |
|---|
| 553 | <span style="font-family: Courier New,Courier,monospace;">header</span>, |
|---|
| 554 | <span style="font-family: Courier New,Courier,monospace;">modules</span>) |
|---|
| [392] | 555 | <br> |
|---|
| [481] | 556 | |
|---|
| [392] | 557 | <br> |
|---|
| [481] | 558 | |
|---|
| 559 | First constant in array <span style="font-family: Courier New,Courier,monospace;">den</span> also |
|---|
| 560 | defined as type double. (<span style="font-family: Courier New,Courier,monospace;">eqn_state_seawater</span>)<br> |
|---|
| 561 | |
|---|
| [392] | 562 | <br> |
|---|
| [481] | 563 | |
|---|
| 564 | Parameter <span style="font-family: Courier New,Courier,monospace;">dvrp_psize</span> |
|---|
| 565 | moved from <span style="font-family: Courier New,Courier,monospace;">particles_par</span> |
|---|
| 566 | to <span style="font-family: Courier New,Courier,monospace;">dvrp_graphics_par</span>. |
|---|
| 567 | (<span style="font-family: Courier New,Courier,monospace;">package_parin</span>)<br> |
|---|
| 568 | |
|---|
| [392] | 569 | <br> |
|---|
| [481] | 570 | |
|---|
| 571 | <span style="font-family: Courier New,Courier,monospace;">topography_grid_convention</span> |
|---|
| 572 | moved from <span style="font-family: Courier New,Courier,monospace;">userpar</span> |
|---|
| 573 | to <span style="font-family: Courier New,Courier,monospace;">inipar</span> |
|---|
| 574 | (<span style="font-family: Courier New,Courier,monospace;">check_parameters</span>, |
|---|
| 575 | <span style="font-family: Courier New,Courier,monospace;">header</span>, |
|---|
| 576 | <span style="font-family: Courier New,Courier,monospace;">parin</span>, |
|---|
| 577 | <span style="font-family: Courier New,Courier,monospace;">read_var_list</span>, |
|---|
| 578 | <span style="font-family: Courier New,Courier,monospace;">user_check_parameters</span>, |
|---|
| 579 | <span style="font-family: Courier New,Courier,monospace;">user_header</span>, |
|---|
| 580 | <span style="font-family: Courier New,Courier,monospace;">user_init_grid</span>, |
|---|
| 581 | <span style="font-family: Courier New,Courier,monospace;">user_parin</span>, |
|---|
| 582 | <span style="font-family: Courier New,Courier,monospace;">write_var_list</span>)<br> |
|---|
| 583 | |
|---|
| [392] | 584 | <br> |
|---|
| [481] | 585 | |
|---|
| 586 | Default value of <span style="font-family: Courier New,Courier,monospace;">grid_matching</span> |
|---|
| 587 | changed to '<span style="font-style: italic;">strict</span>'. (<span style="font-family: Courier New,Courier,monospace;">modules</span>)<br> |
|---|
| 588 | |
|---|
| 589 | <br> |
|---|
| 590 | |
|---|
| 591 | Adjustments for runs on lcxt4 (necessary due to a software update on |
|---|
| 592 | CRAY) and for coupled runs on ibmy. (<span style="font-family: Courier New,Courier,monospace;">mrun</span>, <span style="font-family: Courier New,Courier,monospace;">subjob</span>)</td> |
|---|
| 593 | <td style="vertical-align: top; width: 189px;">advec_particles, |
|---|
| 594 | advec_s_bc, |
|---|
| [392] | 595 | buoyancy, calc_spectra, check_for_restart, check_open, |
|---|
| 596 | check_parameters, close_file, coriolis, cpu_log, data_output_2d, |
|---|
| 597 | data_output_3d, data_output_dvrp, data_output_profiles, |
|---|
| 598 | data_output_ptseries, data_output_spectra, data_output_tseries, |
|---|
| 599 | eqn_state_seawater, fft_xy, flow_statistics, header, init_1d_model, |
|---|
| 600 | init_3d_model, init_dvrp, init_grid, init_particles, init_pegrid, |
|---|
| 601 | message, mrun, netcdf, package_parin, parin, plant_canopy_model, |
|---|
| 602 | poisfft, poisfft_hybrid, poismg, read_3d_binary, read_var_list, subjob, |
|---|
| [481] | 603 | surface_coupler, temperton_fft, timestep, |
|---|
| 604 | user_actions,user_check_parameters, user_data_output_dvrp, |
|---|
| 605 | user_dvrp_coltab, user_header, user_init_grid, user_init_plant_canopy, |
|---|
| 606 | user_parin, user_read_restart_data, user_spectra, write_var_list </td> |
|---|
| [392] | 607 | </tr> |
|---|
| 608 | <tr> |
|---|
| [481] | 609 | <td style="vertical-align: top; width: 27px;"><br> |
|---|
| [392] | 610 | </td> |
|---|
| [481] | 611 | <td style="vertical-align: top; width: 38px;"><br> |
|---|
| [392] | 612 | </td> |
|---|
| [481] | 613 | <td style="vertical-align: top; width: 42px;"><br> |
|---|
| [392] | 614 | </td> |
|---|
| [481] | 615 | <td style="vertical-align: top; width: 40px;"><br> |
|---|
| [392] | 616 | </td> |
|---|
| [481] | 617 | <td style="vertical-align: top; width: 27px;">E<br> |
|---|
| 618 | </td> |
|---|
| 619 | <td style="vertical-align: top; width: 497px;">Bugfix: Initial hydrostatic |
|---|
| 620 | pressure profile in case of ocean runs is now calculated in 5 iteration |
|---|
| 621 | steps. (<span style="font-family: Courier New,Courier,monospace;">init_ocean</span>)<br> |
|---|
| 622 | |
|---|
| [392] | 623 | <br> |
|---|
| [481] | 624 | |
|---|
| 625 | Bugfix: wrong sign in buoyancy production of ocean part in case of not |
|---|
| 626 | using the reference density (only in 3D routine <span style="font-family: Courier New,Courier,monospace;">production_e</span>). |
|---|
| 627 | (<span style="font-family: Courier New,Courier,monospace;">production_e</span>)<br> |
|---|
| 628 | |
|---|
| [392] | 629 | <br> |
|---|
| [481] | 630 | |
|---|
| [392] | 631 | Bugfix: output of averaged 2d/3d quantities requires that an avaraging |
|---|
| 632 | interval has been set, respective error message is included. (<span style="font-family: Courier New,Courier,monospace;">check_parameters</span>)<br> |
|---|
| [481] | 633 | |
|---|
| [392] | 634 | <br> |
|---|
| [481] | 635 | |
|---|
| 636 | Bugfix: Output on unit 14 only if requested by <span style="font-family: Courier New,Courier,monospace;">write_binary</span>. |
|---|
| 637 | (<span style="font-family: Courier New,Courier,monospace;">user_last_actions</span>)<br> |
|---|
| 638 | |
|---|
| [392] | 639 | <br> |
|---|
| [481] | 640 | |
|---|
| 641 | Bugfix to avoid zero division by <span style="font-family: Courier New,Courier,monospace;">km_neutral</span>. |
|---|
| 642 | (<span style="font-family: Courier New,Courier,monospace;">production_e</span>)<br> |
|---|
| 643 | |
|---|
| [392] | 644 | <br> |
|---|
| [481] | 645 | |
|---|
| [392] | 646 | Bugfix for extended NetCDF files: In order to avoid 'data mode' errors |
|---|
| [481] | 647 | if updated attributes are larger than their original size, <span style="font-family: Courier New,Courier,monospace;">NF90_PUT_ATT</span> |
|---|
| 648 | is called in 'define mode' enclosed by <span style="font-family: Courier New,Courier,monospace;">NF90_REDEF</span> |
|---|
| 649 | and <span style="font-family: Courier New,Courier,monospace;">NF90_ENDDEF</span> |
|---|
| [392] | 650 | calls. This implies a possible performance loss; an alternative |
|---|
| 651 | strategy would be to ensure equal attribute size in a job chain. (<span style="font-family: Courier New,Courier,monospace;">netcdf</span>)<br> |
|---|
| [481] | 652 | |
|---|
| [392] | 653 | <br> |
|---|
| [481] | 654 | |
|---|
| [392] | 655 | Bugfix: correction of initial volume flow for non-flat topography. (<span style="font-family: Courier New,Courier,monospace;">init_3d_model</span>)<br> |
|---|
| [481] | 656 | |
|---|
| [392] | 657 | <br> |
|---|
| [481] | 658 | |
|---|
| [392] | 659 | Bugfix: zero initialization of arrays within buildings for '<span style="font-style: italic;">cyclic_fill</span>'. (<span style="font-family: Courier New,Courier,monospace;">init_3d_model</span>)<br> |
|---|
| [481] | 660 | |
|---|
| [392] | 661 | <br> |
|---|
| [481] | 662 | |
|---|
| 663 | Bugfix: <span style="font-family: Courier New,Courier,monospace;">to_be_resorted</span> |
|---|
| 664 | => <span style="font-family: Courier New,Courier,monospace;">s_av</span> |
|---|
| 665 | for time-averaged scalars. (<span style="font-family: Courier New,Courier,monospace;">data_output_2d</span>, |
|---|
| 666 | <span style="font-family: Courier New,Courier,monospace;">data_output_3d</span>)<br> |
|---|
| 667 | |
|---|
| [392] | 668 | <br> |
|---|
| [481] | 669 | |
|---|
| 670 | Bugfix: avoid that <span style="font-family: Courier New,Courier,monospace;">ngp_2dh_s_inner</span> |
|---|
| 671 | becomes zero. (<span style="font-family: Courier New,Courier,monospace;">init_3_model</span>)<br> |
|---|
| 672 | |
|---|
| [392] | 673 | <br> |
|---|
| [481] | 674 | |
|---|
| [392] | 675 | Typographical error: unit of wpt in dots_unit. (<span style="font-family: Courier New,Courier,monospace;">modules</span>)<br> |
|---|
| [481] | 676 | |
|---|
| [392] | 677 | <br> |
|---|
| [481] | 678 | |
|---|
| [392] | 679 | Bugfix: error in check, if particles moved further than one subdomain |
|---|
| 680 | length. This check must not be applied for newly released particles. (<span style="font-family: Courier New,Courier,monospace;">advec_particles</span>)<br> |
|---|
| [481] | 681 | |
|---|
| [392] | 682 | <br> |
|---|
| [481] | 683 | |
|---|
| [392] | 684 | Bugfix: several tail counters are initialized, <span style="font-family: Courier New,Courier,monospace;">particle_tail_coordinates</span> |
|---|
| 685 | is only written to file if its third index is > 0, arrays for tails |
|---|
| 686 | are allocated with a minimum size of 10 tails if there is no tail |
|---|
| [481] | 687 | initially. (<span style="font-family: Courier New,Courier,monospace;">advec_particles</span>, |
|---|
| 688 | <span style="font-family: Courier New,Courier,monospace;">init_particles</span><span style="font-family: Courier New,Courier,monospace;"></span>)<br> |
|---|
| 689 | |
|---|
| [392] | 690 | <br> |
|---|
| [481] | 691 | |
|---|
| [392] | 692 | Bugfix: pressure included for profile output. (<span style="font-family: Courier New,Courier,monospace;">check_parameters</span>)<br> |
|---|
| [481] | 693 | |
|---|
| [392] | 694 | <br> |
|---|
| [481] | 695 | |
|---|
| 696 | Bugfix: Type of <span style="font-family: Courier New,Courier,monospace;">count</span> and <span style="font-family: Courier New,Courier,monospace;">count_rate</span> |
|---|
| 697 | changed to default <span style="font-family: Courier New,Courier,monospace;">INTEGER</span> on |
|---|
| 698 | NEC machines. (<span style="font-family: Courier New,Courier,monospace;">cpu_log</span>)<br> |
|---|
| 699 | |
|---|
| [392] | 700 | <br> |
|---|
| [481] | 701 | |
|---|
| 702 | Bugfix: output of particle time series only if particle advection is |
|---|
| 703 | switched on. (<span style="font-family: Courier New,Courier,monospace;">time_integration</span>)<br> |
|---|
| 704 | |
|---|
| [392] | 705 | <br> |
|---|
| [481] | 706 | |
|---|
| 707 | Bugfix: qsws was calculated in case of <span style="font-family: Courier New,Courier,monospace;">constant heatflux</span> |
|---|
| 708 | = <span style="font-family: Courier New,Courier,monospace;">.FALSE.</span>. |
|---|
| 709 | (<span style="font-family: Courier New,Courier,monospace;">prandtl_fluxes</span>)<br> |
|---|
| 710 | |
|---|
| [392] | 711 | <br> |
|---|
| [481] | 712 | |
|---|
| 713 | Bugfix: averaging along z is not allowed for 2d quantities (e.g. u* and |
|---|
| 714 | z0). (<span style="font-family: Courier New,Courier,monospace;">data_output_2d</span>)<br> |
|---|
| 715 | |
|---|
| [392] | 716 | <br> |
|---|
| [481] | 717 | |
|---|
| [392] | 718 | Typographical errors. (<span style="font-family: Courier New,Courier,monospace;">netcdf</span>)<br> |
|---|
| [481] | 719 | |
|---|
| [392] | 720 | <br> |
|---|
| [481] | 721 | |
|---|
| 722 | If the inversion height calculated by the prerun is zero, |
|---|
| 723 | inflow_damping_height must be explicitly specified. (<span style="font-family: Courier New,Courier,monospace;">init_3d_model</span>)<br> |
|---|
| 724 | |
|---|
| [392] | 725 | <br> |
|---|
| [481] | 726 | |
|---|
| [392] | 727 | Small bugfix concerning 3d 64bit netcdf output format. (<span style="font-family: Courier New,Courier,monospace;">header</span>)<br> |
|---|
| [481] | 728 | |
|---|
| [392] | 729 | <br> |
|---|
| [481] | 730 | |
|---|
| [392] | 731 | Bugfix: <span style="font-family: Courier New,Courier,monospace;">dt_fixed</span> |
|---|
| 732 | removed from the restart file, because otherwise, no change from a |
|---|
| [481] | 733 | fixed to a variable timestep would be possible in restart runs. (<span style="font-family: Courier New,Courier,monospace;">read_var_list</span>, |
|---|
| 734 | <span style="font-family: Courier New,Courier,monospace;">write_var_list</span>)<br> |
|---|
| 735 | |
|---|
| [392] | 736 | <br> |
|---|
| [481] | 737 | |
|---|
| 738 | Bugfix: initial setting of <span style="font-family: Courier New,Courier,monospace;">time_coupling</span> |
|---|
| 739 | in coupled restart runs. (<span style="font-family: Courier New,Courier,monospace;">time_integration</span>)</td> |
|---|
| 740 | <td style="vertical-align: top; width: 189px;">advec_particles, |
|---|
| [392] | 741 | check_parameters, cpu_log, data_output_2d, data_output_3d, header, |
|---|
| 742 | init_3d_model, init_particles, init_ocean, modules, netcdf, |
|---|
| 743 | prandtl_fluxes, production_e, read_var_list, time_integration, |
|---|
| 744 | user_last_actions, write_var_list<br> |
|---|
| [481] | 745 | |
|---|
| 746 | </td> |
|---|
| 747 | </tr> |
|---|
| 748 | <tr> |
|---|
| 749 | <td style="vertical-align: top; width: 27px;">02/02/09<br> |
|---|
| 750 | </td> |
|---|
| 751 | <td style="vertical-align: top; width: 38px;">SR<br> |
|---|
| 752 | </td> |
|---|
| 753 | <td style="vertical-align: top; width: 42px;">228<br> |
|---|
| 754 | </td> |
|---|
| 755 | <td style="vertical-align: top; width: 40px;">3.6<br> |
|---|
| 756 | </td> |
|---|
| 757 | <td style="vertical-align: top; width: 27px;">N<br> |
|---|
| 758 | </td> |
|---|
| 759 | <td style="vertical-align: top; width: 497px;">This |
|---|
| 760 | release contains further additions, changes, and bugfixes for the |
|---|
| 761 | SGI-ICE system, as well as important changes like the splitting of the |
|---|
| 762 | user-interface into single files, a complete revision of the |
|---|
| 763 | pre-compiling mechanism allowing to use different make-depositories |
|---|
| 764 | simultaneously, and a revision of the reading-mechanism from restart |
|---|
| 765 | files, which has no more restrictions in case that the previous and |
|---|
| 766 | current run have different domain/subdomain sizes. A new handling of |
|---|
| 767 | all kind of output messages is introduced with this release and will be |
|---|
| 768 | applied to all existing messages within the next releases.<br> |
|---|
| 769 | |
|---|
| [392] | 770 | <br> |
|---|
| [481] | 771 | |
|---|
| 772 | <span style="font-weight: bold;">New features are:</span><br style="font-weight: bold;"> |
|---|
| 773 | |
|---|
| 774 | <br> |
|---|
| 775 | |
|---|
| 776 | Restart runs on SGI-ICE are working. (mrun)<br> |
|---|
| 777 | |
|---|
| 778 | 2d-decomposition is default on SGI-ICE systems. (init_pegrid)<br> |
|---|
| 779 | |
|---|
| 780 | <br> |
|---|
| 781 | |
|---|
| 782 | Ocean-atmosphere coupling realized with MPI-1. mrun adjusted for this |
|---|
| 783 | case (-Y option). Check that PALM is called with <span style="font-family: Courier New,Courier,monospace;">mrun</span>-option |
|---|
| 784 | "<span style="font-style: italic;">-K parallel</span>" for coupling. |
|---|
| 785 | Adjustments in <span style="font-family: Courier New,Courier,monospace;">mrun</span>, <span style="font-family: Courier New,Courier,monospace;">mbuild</span>, and |
|---|
| 786 | <span style="font-family: Courier New,Courier,monospace;">subjob</span> |
|---|
| 787 | for lcxt4.<br> |
|---|
| 788 | |
|---|
| 789 | <br> |
|---|
| 790 | |
|---|
| 791 | DVRP arguments changed to single precision, mode pathlines added.<br> |
|---|
| 792 | |
|---|
| 793 | <br> |
|---|
| 794 | |
|---|
| 795 | User can add additional routines in files <span style="font-family: Courier New,Courier,monospace;">user_additional_routines</span>.<br> |
|---|
| 796 | |
|---|
| 797 | <br> |
|---|
| 798 | |
|---|
| 799 | User can check user parameters and deduce further quantities in <span style="font-family: Courier New,Courier,monospace;">user_check_parameters</span></td> |
|---|
| 800 | <td style="vertical-align: top; width: 189px;">check_for_restart, |
|---|
| 801 | check_parameters, data_output_dvrp, init_dvrp, init_pegrid, local_stop, |
|---|
| 802 | modules, package_parin, palm, surface_coupler, timestep<br> |
|---|
| 803 | |
|---|
| 804 | <br> |
|---|
| 805 | |
|---|
| 806 | Makefile, mbuild, mrun, subjob<br> |
|---|
| 807 | |
|---|
| 808 | <br> |
|---|
| 809 | |
|---|
| 810 | <span style="font-weight: bold;">new:</span><br> |
|---|
| 811 | |
|---|
| 812 | init_coupling, user_additional_routines, user_check_parameters</td> |
|---|
| 813 | </tr> |
|---|
| 814 | <tr> |
|---|
| 815 | <td style="vertical-align: top; width: 27px;"><br> |
|---|
| [392] | 816 | </td> |
|---|
| [481] | 817 | <td style="vertical-align: top; width: 38px;"><br> |
|---|
| 818 | </td> |
|---|
| 819 | <td style="vertical-align: top; width: 42px;"><br> |
|---|
| 820 | </td> |
|---|
| 821 | <td style="vertical-align: top; width: 40px;"><br> |
|---|
| 822 | </td> |
|---|
| 823 | <td style="vertical-align: top; width: 27px;">C<br> |
|---|
| 824 | </td> |
|---|
| 825 | <td style="vertical-align: top; width: 497px;">User interface has been |
|---|
| 826 | split into single files.<br> |
|---|
| 827 | |
|---|
| 828 | <br> |
|---|
| 829 | |
|---|
| 830 | Type of variables <span style="font-family: Courier New,Courier,monospace;">count</span> and <span style="font-family: Courier New,Courier,monospace;">count_rate</span> |
|---|
| 831 | changed to INTEGER(8) in order to avoid "out of range" problems, which |
|---|
| 832 | result in measured negative time intervals. (cpu_log, local_tremain, |
|---|
| 833 | local_tremain_ini)<br> |
|---|
| 834 | |
|---|
| 835 | <br> |
|---|
| 836 | |
|---|
| 837 | Reading mechanism from restart files |
|---|
| 838 | completely revised. The subdomain/total domain size is now allowed to |
|---|
| 839 | vary arbitrarily between the current and previous run. (read_var_list, |
|---|
| 840 | read_3d_binary, user_read_restart_data)<br> |
|---|
| 841 | |
|---|
| 842 | <br> |
|---|
| 843 | |
|---|
| 844 | Precompilation mechanism (<span style="font-family: Courier New,Courier,monospace;">mbuild</span>) |
|---|
| 845 | completely revised: the source-tarfile remains in the source directory (<span style="font-family: Courier New,Courier,monospace;">trunk/SOURCE</span>). |
|---|
| 846 | One depository per block (given in the config-file) is created. Always |
|---|
| 847 | all files from the source directory are copied to the respective |
|---|
| 848 | depository. No additional file checks are done any more (mrun version |
|---|
| 849 | 2.1). The depository name used contains the conditions given by <span style="font-family: Courier New,Courier,monospace;">mrun</span>-option |
|---|
| 850 | "<span style="font-family: Courier New,Courier,monospace;">-K</span>". |
|---|
| 851 | (mbuild, mrun)<br> |
|---|
| 852 | |
|---|
| 853 | <br> |
|---|
| 854 | |
|---|
| 855 | Output messages (including required stop of execution) can now be |
|---|
| 856 | handled with the new subroutine <span style="font-family: Courier New,Courier,monospace;">message</span>. |
|---|
| 857 | All output messages will be replaced by this routine step by step |
|---|
| 858 | within the next revisions.<br> |
|---|
| 859 | |
|---|
| 860 | <br> |
|---|
| 861 | |
|---|
| 862 | Neumann boundary condition at <span style="font-family: Courier New,Courier,monospace;">k=nzb</span> is |
|---|
| 863 | explicitly set for better reading, although this has been already done |
|---|
| 864 | in boundary_conds. (advec_s_bc)<br> |
|---|
| 865 | |
|---|
| 866 | <br> |
|---|
| 867 | |
|---|
| 868 | Origin of the xy-coordinate system shifted from the center of the first |
|---|
| 869 | grid cell (indices <span style="font-family: Courier New,Courier,monospace;">i=0</span>, <span style="font-family: Courier New,Courier,monospace;">j=0</span>) to the |
|---|
| 870 | south-left corner of this cell. (netcdf) Topography definition |
|---|
| 871 | according to new user parameter <span style="font-family: Courier New,Courier,monospace;">topography_grid_convention</span>. |
|---|
| 872 | (init_grid, modules, user_header, user_init_grid, user_parin)</td> |
|---|
| 873 | <td style="vertical-align: top; width: 189px;">advec_s_bc, |
|---|
| 874 | check_parameters, cpu_log, init_grid, local_stop, local_tremain, |
|---|
| 875 | local_tremain_ini, modules, netcdf, read_3d_binary, read_var_list, |
|---|
| 876 | user_read_restart_data<br> |
|---|
| 877 | |
|---|
| 878 | <br> |
|---|
| 879 | |
|---|
| 880 | Makefile, mbuild, mrun<br> |
|---|
| 881 | |
|---|
| 882 | <br> |
|---|
| 883 | |
|---|
| 884 | <span style="font-weight: bold;">removed:</span><br> |
|---|
| 885 | |
|---|
| 886 | user_interface<br> |
|---|
| 887 | |
|---|
| 888 | <br> |
|---|
| 889 | |
|---|
| 890 | <span style="font-weight: bold;">new:</span><br> |
|---|
| 891 | |
|---|
| 892 | message, |
|---|
| 893 | user_3d_data_averaging, user_actions, user_advec_particles, |
|---|
| 894 | user_check_data_output, user_check_data_output_pr, user_data_output_2d, |
|---|
| 895 | user_data_output_3d, user_data_output_dvrp, user_define_netcdf_grid, |
|---|
| 896 | user_dvrp_coltab, user_header, user_init_3d_model, user_init, |
|---|
| 897 | user_init_grid, user_init_particles, user_init_plant_canopy, |
|---|
| 898 | user_last_actions, user_parin, user_parin, user_particle_attributes, |
|---|
| 899 | user_read_restart_data, user_spectra, user_statistics</td> |
|---|
| [392] | 900 | </tr> |
|---|
| [481] | 901 | <tr> |
|---|
| 902 | <td style="vertical-align: top; width: 27px;"><br> |
|---|
| 903 | </td> |
|---|
| 904 | <td style="vertical-align: top; width: 38px;"><br> |
|---|
| 905 | </td> |
|---|
| 906 | <td style="vertical-align: top; width: 42px;"><br> |
|---|
| 907 | </td> |
|---|
| 908 | <td style="vertical-align: top; width: 40px;"><br> |
|---|
| 909 | </td> |
|---|
| 910 | <td style="vertical-align: top; width: 27px;">E<br> |
|---|
| 911 | </td> |
|---|
| 912 | <td style="vertical-align: top; width: 497px;">Bugfix: array <span style="font-family: Courier New,Courier,monospace;">d</span> is |
|---|
| 913 | reallocated in case that multigrid is used. (calc_spectra)<br> |
|---|
| [392] | 914 | |
|---|
| [481] | 915 | <br> |
|---|
| 916 | |
|---|
| 917 | Bugfixes for nonparallel execution. (check_for_restart, cpu_statistics, |
|---|
| 918 | inflow_turbulence, timestep)<br> |
|---|
| 919 | |
|---|
| 920 | <br> |
|---|
| 921 | |
|---|
| 922 | Size of <span style="font-family: Courier New,Courier,monospace;">pf3d |
|---|
| 923 | </span>adjusted to the required output size (1 gridpoint less, |
|---|
| 924 | along all three dimensions), because output of a subset of the data (<span style="font-family: Courier New,Courier,monospace;">pf3d(nxa:nxe...)</span>) |
|---|
| 925 | in the NF90_PUT_VAR statement caused segmentation fault with the INTEL |
|---|
| 926 | compiler. (combine_plot_fields)<br> |
|---|
| 927 | |
|---|
| 928 | <br> |
|---|
| 929 | |
|---|
| 930 | Bugfix: error in <span style="font-family: Courier New,Courier,monospace;">zu</span> index in |
|---|
| 931 | case of <span style="font-family: Courier New,Courier,monospace;">section_xy=-1</span>. |
|---|
| 932 | (header)<br> |
|---|
| 933 | |
|---|
| 934 | <br> |
|---|
| 935 | |
|---|
| 936 | Inconsistency |
|---|
| 937 | removed: as the thermal stratification is not taken into account for |
|---|
| 938 | the evaluation of the wall fluxes at vertical walls, the eddy viscosity |
|---|
| 939 | <span style="font-family: Courier New,Courier,monospace;">km</span> |
|---|
| 940 | must not be used for the evaluation of the velocity gradients <span style="font-family: Courier New,Courier,monospace;">dudy</span>, <span style="font-family: Courier New,Courier,monospace;">dwdy</span>, <span style="font-family: Courier New,Courier,monospace;">dvdx</span> and <span style="font-family: Courier New,Courier,monospace;">dwdx</span>. |
|---|
| 941 | (production_e)<br> |
|---|
| 942 | |
|---|
| 943 | <br> |
|---|
| 944 | |
|---|
| 945 | Bugfix in calculating <span style="font-family: Courier New,Courier,monospace;">k</span> index in |
|---|
| 946 | case of oceans runs. (sort_particles)<br> |
|---|
| 947 | |
|---|
| 948 | <br> |
|---|
| 949 | |
|---|
| 950 | Bugfix: no output of particle concentration and radius unless particles |
|---|
| 951 | have been started. (data_output_2d)<br> |
|---|
| 952 | |
|---|
| 953 | <br> |
|---|
| 954 | |
|---|
| 955 | Bugfix: reading of <span style="font-family: Courier New,Courier,monospace;">spectrum_x|y</span> |
|---|
| 956 | from restart files ignored if total numbers of grid points do not |
|---|
| 957 | match. (read_3d_binary)<br> |
|---|
| 958 | |
|---|
| 959 | <br> |
|---|
| 960 | |
|---|
| 961 | Bugfix: abort in case that absolute temperature is below zero. |
|---|
| 962 | (init_cloud_physics)</td> |
|---|
| 963 | <td style="vertical-align: top; width: 189px;">advec_particles, |
|---|
| 964 | calc_spectra, check_for_restart, cpu_statistics, data_output_2d, |
|---|
| 965 | header, inflow_turbulence, init_cloud_physics, production_e, |
|---|
| 966 | read_3d_binary, timestep<br> |
|---|
| 967 | |
|---|
| 968 | <br> |
|---|
| 969 | |
|---|
| 970 | combine_plot_fields</td> |
|---|
| 971 | </tr> |
|---|
| 972 | </tbody> |
|---|
| 973 | </table> |
|---|
| 974 | <b><blink></blink></b><br> |
|---|
| [62] | 975 | <br> |
|---|
| 976 | <h2><a name="Kapitel2.0"></a>2.0 How |
|---|
| 977 | to change the model source |
|---|
| [392] | 978 | code</h2>Currently |
|---|
| 979 | (Sep 23rd, 2009), only selected users are allowed to commit changes to |
|---|
| 980 | the repository. Some rules about how to check in modified code will be |
|---|
| 981 | added later.<br> |
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| 982 | <h2> |
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| [62] | 983 | <a name="Kapitel3.0"></a>3.0 Description |
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| 984 | of selected parts of the |
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| [5] | 985 | model source code</h2> |
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| [392] | 986 | <b></b> |
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| 987 | <p>This section gives links to existing descriptions about special |
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| 988 | parts of the PALM code, e.g. special numerical methods that are used |
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| 989 | (including mathematical background). Documents are stored in single |
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| 990 | files with different formats. Some are in German (sorry for the |
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| 991 | inconvenience). |
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| [62] | 992 | <br> |
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| 993 | </p><ul> <li> <a name="UPS"></a>upstream-spline |
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| [481] | 994 | advection scheme ( <a href="methods/upstream_spline/ups.pdf">.pdf</a> |
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| 995 | , only in German)</li> <li> <a name="Cloud_physics"></a>cloud |
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| 996 | physics module ( <a href="methods/cloud_physics/cloud_physics.pdf">.pdf</a> |
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| 997 | )</li> |
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| 998 | <li> <a name="Bitkompression"></a>data compression with <a href="methods/bit_compression/bit_compression.html">bit shifting method</a> (only in German)<br> |
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| 999 | </li> |
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| 1000 | <li>Runge-Kutta |
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| 1001 | time integration scheme ( <a href="methods/runge_kutta/runge_kutta.pdf">.pdf</a> |
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| 1002 | , only in German)</li> |
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| 1003 | |
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| [62] | 1004 | </ul><br> |
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| [5] | 1005 | |
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| [62] | 1006 | <br> |
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| 1007 | <br> |
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| 1008 | <br> |
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| 1009 | <br> |
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| 1010 | <br> |
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| 1011 | <br> |
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| 1012 | <br> |
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| [139] | 1013 | </body></html> |
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