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| 3 | <xsscleaned_taghttp-equiv ="content-type" content="text/html; charset=windows-1252"></xsscleaned_taghttp-equiv><title>Tsubame</title><style> |
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| 8 | <body style="direction: ltr;" lang="en-US"> <xsscleaned_tagname ="generator" content="StarOffice 7 (Win32)"></xsscleaned_tagname> |
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| 9 | <xsscleaned_tagname ="author" content="Siegfried Raasch"></xsscleaned_tagname> |
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| 10 | <xsscleaned_tagname ="created" content="20040809;13460943"></xsscleaned_tagname> |
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| 11 | <xsscleaned_tagname ="changed" content="20041112;15085727"></xsscleaned_tagname> |
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| 12 | <xsscleaned_tagname ="keywords" content="parallel LES model"></xsscleaned_tagname> |
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| 13 | <h3 style="line-height: 100%;">Tsubame</h3> |
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| 14 | <p style="line-height: 100%;">This document contains local |
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| 15 | support information for PALM users on the Linux Cluster <span style="font-weight: bold;">Tsubame</span> of the Tokyo |
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| 16 | Institute of Technology, Tokyo, Japan (<a href="http://www.gsic.titech.ac.jp/%7Eccwww">http://www.gsic.titech.ac.jp/~ccwww</a>). |
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| 17 | Japanese and English user manuals are available for download (<a href="http://www.gsic.titech.ac.jp/%7Eccwww/tebiki">http://www.gsic.titech.ac.jp/~ccwww/tebiki</a>).</p><h4>Subversion</h4><p><span style="text-decoration: underline;">Installation:</span><br>Please |
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| 18 | install a recent version of subversion or simply copy <code><span style="font-family: Courier New,Courier,monospace;">svn-tyamanas.tgz</span></code> |
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| 19 | (subversion 1.4.3) from <code><span style="font-family: Courier New,Courier,monospace;">/work</span></code> |
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| 20 | on Tsubame (login). By using following commands subversion will be |
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| 21 | installed under your home directory.</p><code><span style="font-family: Courier New,Courier,monospace;">cd ~<br>cp /work/</span><span style="font-family: Courier New,Courier,monospace;">svn-tyamanas.tgz |
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| 22 | ~</span><br></code><span style="font-family: Courier New,Courier,monospace;"><code>tar |
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| 23 | xvzf svn-tyamanas.tgz</code><br></span><p><span style="font-family: Courier New,Courier,monospace;"></span>The |
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| 24 | following lines should be added to <code><span style="font-family: Courier New,Courier,monospace;">.profile</span></code> |
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| 25 | (and should be executed manually on first-time installation):<span style="font-family: Courier New,Courier,monospace;"></span></p><span style="font-family: Courier New,Courier,monospace;"><code>export |
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| 26 | LD_LIBRARY_PATH=$HOME/svn/lib</code></span><code><br style="font-family: Courier New,Courier,monospace;"><span style="font-family: Courier New,Courier,monospace;"> |
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| 27 | export PATH=$HOME/svn/bin:$PATH</span></code><span style="text-decoration: underline;"><br></span><p><span style="text-decoration: underline;">Usage:</span><br>Since |
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| 28 | Tsubame is located behind a firewall, the usual address <a class="fixed" href="svn://130.75.105.45" target="_blank">svn://130.75.105.45</a> is unreachable from Tsubame. Instead, please login to media-o |
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| 29 | and use <a class="fixed" href="svn://p9c.cc.titech.ac.jp:36900" target="_blank">svn://p9c.cc.titech.ac.jp:36900</a>. |
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| 30 | This port works in both directions, i.e. for <code>svn update</code> as well as <code>svn commit</code> commands.</p><h4>Batch system<br></h4><p>The implementation of the <span style="font-weight: bold;">n1ge</span> command on |
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| 31 | Tsubame requires modifications to <span style="font-weight: bold;">mrun</span> and <span style="font-weight: bold;">subjob</span> for PALM to |
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| 32 | run on Tsubame. Since <span style="font-weight: bold;">mrun</span> |
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| 33 | must be executed on one PE only, a one-PE "submitting job" is created |
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| 34 | when the user calls <span style="font-weight: bold;">mrun</span>. |
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| 35 | At the time when this "submitting job" is actually executed, it starts |
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| 36 | the main PALM job in the foreground. However, this only works if |
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| 37 | enough resources are available at that time. Therefore PALM users on |
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| 38 | Tsubame are advised to consider the queue load of the available queues |
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| 39 | for the main job (<code>qstat -g c</code>) before job submission.</p><p>According |
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| 40 | to the current queue configuration (<a href="http://www.gsic.titech.ac.jp/%7Eccwww/tgc/q_e.html">http://www.gsic.titech.ac.jp/~ccwww/tgc/q_e.html</a>), |
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| 41 | the following <span style="font-weight: bold;">mrun</span> |
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| 42 | options are available:</p><table style="text-align: left; width: 100%;" border="1" cellpadding="2" cellspacing="2"><tbody><tr><td><span style="font-weight: bold;">mrun</span> option</td><td>explanation</td><td>possible |
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| 43 | values</td><td>default value</td></tr><tr><td><code>-q</code></td><td>queue |
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| 44 | name for main job</td><td>novice, sla1, sla2, |
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| 45 | sla3, RAM64GB, RAM128GB</td><td>sla3</td></tr><tr><td><code>-n</code></td><td>queue |
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| 46 | name for "submitting job" (always runs on 1 PE only)</td><td>novice, |
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| 47 | sla1, sla2, sla3</td><td>sla3</td></tr><tr><td><code>-g</code></td><td>group number</td><td>name of the N1GE_GROUP that is required to utilize the bes or sla queues</td><td>none</td></tr></tbody></table><p>Note that the default value "sla3" of the |
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| 48 | <span style="font-weight: bold;">mrun</span> option <code>-q</code> may |
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| 49 | not always be the best choice. For code development, debugging or short |
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| 50 | test runs the value "novice" for both options may be suitable. |
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| 51 | Production runs should use the respective production queues (see <a href="http://www.gsic.titech.ac.jp/%7Eccwww/tgc/q_e.html">http://www.gsic.titech.ac.jp/~ccwww/tgc/q_e.html</a> for details). </p><p>The computer center advised us that due to restrictions of the batch system the value "novice" should not be mixed with the other queues. Please specify either a combination of sla<span style="font-style: italic;">n</span> for <code>-n</code> and sla<span style="font-style: italic;">n</span> or RAM<span style="font-style: italic;">*</span> for <code>-q</code>, or specify the combination "novice" + "novice".<span style="font-style: italic;"></span></p><p>The <span style="font-weight: bold;">mrun</span> option <code><span style="font-family: Courier New,Courier,monospace;">-t</span></code> |
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| 52 | contains the CPU time demand for the main job in s which will be |
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| 53 | automatically converted into min for the <span style="font-weight: bold;">n1ge</span> command. The |
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| 54 | option <code><span style="font-family: Courier New,Courier,monospace;">-m</span></code> |
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| 55 | contains the memory demand for the main job in MB which will be |
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| 56 | automatically converted into GB for the <span style="font-weight: bold;">n1ge</span> command.</p><br><i>Last |
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| 57 | change:</i> $Id: Tsubame.html 129 2007-10-30 12:12:24Z letzel $</body></html> |
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