source: palm/trunk/DOC/app/index.html @ 392

Last change on this file since 392 was 392, checked in by raasch, 12 years ago

New:
---

Adapted for machine lck
(mrun, mbuild, subjob)

bc_lr/bc_ns in most subroutines replaced by LOGICAL variables bc_lr_cyc,
bc_ns_cyc for speed optimization
(check_parameters, diffusion_u, diffusion_v, diffusion_w, modules)

Additional timestep criterion in case of simulations with plant canopy (timestep)

Check for illegal entries in section_xy|xz|yz that exceed nz+1|ny+1|nx+1
(check_parameters)

Clipping of dvrp output implemented. Default colourtable for particles
implemented, particle attributes (color, dvrp_size) can be set with new
parameters particle_color, particle_dvrpsize, color_interval,
dvrpsize_interval (init_dvrp, data_output_dvrp, modules, user_data_output_dvrp).
Slicer attributes (dvrp) are set with new routine set_slicer_attributes_dvrp
and are controlled with existing parameters slicer_range_limits.
(set_slicer_attributes_dvrp)

Ocean atmosphere coupling allows to use independent precursor runs in order
to account for different spin-up times. The time when coupling has to be
started is given by new inipar parameter coupling_start_time. The precursor
ocean run has to be started using new mrun option "-y" in order to add
appendix "_O" to all output files.
(check_for_restart, check_parameters, data_output_2d, data_output_3d,
data_output_profiles, data_output_ptseries, data_output_spectra,
data_output_tseries, header, init_coupling, modules, mrun,
parin, read_var_list, surface_coupler, time_integration, write_var_list)

Polygon reduction for topography and ground plate isosurface. Reduction level
for buildings can be chosen with parameter cluster_size. (init_dvrp)

External pressure gradient (check_parameters, header, init_3d_model, modules,
parin, prognostic_equations, read_var_list, write_var_list)

New topography case 'single_street_canyon' (header, init_grid, modules, parin,
read_var_list, user_check_parameters, user_header, user_init_grid, write_var_list)

Option to predefine a target bulk velocity for conserve_volume_flow
(check_parameters, header, init_3d_model, modules, parin, read_var_list,
write_var_list)

Option for user defined 2D data output in xy cross sections at z=nzb+1
(data_output_2d, user_data_output_2d)

xy cross section output of surface heatfluxes (latent, sensible)
(average_3d_data, check_parameters, data_output_2d, modules, read_3d_binary,
sum_up_3d_data, write_3d_binary)

average_3d_data, check_for_restart, check_parameters, data_output_2d, data_output_3d, data_output_dvrp, data_output_profiles, data_output_ptseries, data_output_spectra, data_output_tseries, init_coupling, init_dvrp, init_grid, init_3d_model, header, mbuild, modules, mrun, package_parin, parin, prognostic_equations, read_3d_binary, read_var_list, subjob, surface_coupler, timestep, time_integration, user_check_parameters, user_data_output_2d, user_data_output_dvrp, user_header, user_init_grid, write_3d_binary, write_var_list

New: set_particle_attributes, set_slicer_attributes_dvrp

Changed:


lcmuk changed to lc to avoid problems with Intel compiler on sgi-ice
(poisfft)

For extended NetCDF files, the updated title attribute includes an update of
time_average_text where appropriate. (netcdf)

In case of restart runs without extension, initial profiles are not written
to NetCDF-file anymore. (data_output_profiles, modules, read_var_list, write_var_list)

Small change in formatting of the message handling routine concering the output in the
job protocoll. (message)

initializing_actions='read_data_for_recycling' renamed to 'cyclic_fill', now
independent of turbulent_inflow (check_parameters, header, init_3d_model)

2 NetCDF error numbers changed. (data_output_3d)

A Link to the website appendix_a.html is printed for further information
about the possible errors. (message)

Temperature gradient criterion for estimating the boundary layer height
replaced by the gradient criterion of Sullivan et al. (1998). (flow_statistics)

NetCDF unit attribute in timeseries output in case of statistic regions added
(netcdf)

Output of NetCDF messages with aid of message handling routine.
(check_open, close_file, data_output_2d, data_output_3d,
data_output_profiles, data_output_ptseries, data_output_spectra,
data_output_tseries, netcdf, output_particles_netcdf)

Output of messages replaced by message handling routine.
(advec_particles, advec_s_bc, buoyancy, calc_spectra, check_for_restart,
check_open, coriolis, cpu_log, data_output_2d, data_output_3d, data_output_dvrp,
data_output_profiles, data_output_spectra, fft_xy, flow_statistics, header,
init_1d_model, init_3d_model, init_dvrp, init_grid, init_particles, init_pegrid,
netcdf, parin, plant_canopy_model, poisfft_hybrid, poismg, read_3d_binary,
read_var_list, surface_coupler, temperton_fft, timestep, user_actions,
user_data_output_dvrp, user_dvrp_coltab, user_init_grid, user_init_plant_canopy,
user_parin, user_read_restart_data, user_spectra )

Maximum number of tails is calculated from maximum number of particles and
skip_particles_for_tail (init_particles)

Value of vertical_particle_advection may differ for each particle group
(advec_particles, header, modules)

First constant in array den also defined as type double. (eqn_state_seawater)

Parameter dvrp_psize moved from particles_par to dvrp_graphics_par. (package_parin)

topography_grid_convention moved from userpar to inipar (check_parameters,
header, parin, read_var_list, user_check_parameters, user_header,
user_init_grid, user_parin, write_var_list)

Default value of grid_matching changed to strict.

Adjustments for runs on lcxt4 (necessary due to an software update on CRAY) and
for coupled runs on ibmy (mrun, subjob)

advec_particles, advec_s_bc, buoyancy, calc_spectra, check_for_restart, check_open, check_parameters, close_file, coriolis, cpu_log, data_output_2d, data_output_3d, data_output_dvrp, data_output_profiles, data_output_ptseries, data_output_spectra, data_output_tseries, eqn_state_seawater, fft_xy, flow_statistics, header, init_1d_model, init_3d_model, init_dvrp, init_grid, init_particles, init_pegrid, message, mrun, netcdf, output_particles_netcdf, package_parin, parin, plant_canopy_model, poisfft, poisfft_hybrid, poismg, read_3d_binary, read_var_list, sort_particles, subjob, user_check_parameters, user_header, user_init_grid, user_parin, surface_coupler, temperton_fft, timestep, user_actions, user_data_output_dvrp, user_dvrp_coltab, user_init_grid, user_init_plant_canopy, user_parin, user_read_restart_data, user_spectra, write_var_list

Errors:


Bugfix: Initial hydrostatic pressure profile in case of ocean runs is now
calculated in 5 iteration steps. (init_ocean)

Bugfix: wrong sign in buoyancy production of ocean part in case of not using
the reference density (only in 3D routine production_e) (production_e)

Bugfix: output of averaged 2d/3d quantities requires that an avaraging
interval has been set, respective error message is included (check_parameters)

Bugfix: Output on unit 14 only if requested by write_binary.
(user_last_actions)

Bugfix to avoid zero division by km_neutral (production_e)

Bugfix for extended NetCDF files: In order to avoid 'data mode' errors if
updated attributes are larger than their original size, NF90_PUT_ATT is called
in 'define mode' enclosed by NF90_REDEF and NF90_ENDDEF calls. This implies a
possible performance loss; an alternative strategy would be to ensure equal
attribute size in a job chain. (netcdf)

Bugfix: correction of initial volume flow for non-flat topography (init_3d_model)
Bugfix: zero initialization of arrays within buildings for 'cyclic_fill' (init_3d_model)

Bugfix: to_be_resorted => s_av for time-averaged scalars (data_output_2d, data_output_3d)

Bugfix: error in formatting the output (message)

Bugfix: avoid that ngp_2dh_s_inner becomes zero (init_3_model)

Typographical error: unit of wpt in dots_unit (modules)

Bugfix: error in check, if particles moved further than one subdomain length.
This check must not be applied for newly released particles. (advec_particles)

Bugfix: several tail counters are initialized, particle_tail_coordinates is
only written to file if its third index is > 0, arrays for tails are allocated
with a minimum size of 10 tails if there is no tail initially (init_particles,
advec_particles)

Bugfix: pressure included for profile output (check_parameters)

Bugfix: Type of count and count_rate changed to default INTEGER on NEC machines
(cpu_log)

Bugfix: output if particle time series only if particle advection is switched
on. (time_integration)

Bugfix: qsws was calculated in case of constant heatflux = .FALSE. (prandtl_fluxes)

Bugfix: averaging along z is not allowed for 2d quantities (e.g. u* and z0) (data_output_2d)

Typographical errors (netcdf)

If the inversion height calculated by the prerun is zero, inflow_damping_height
must be explicitly specified (init_3d_model)

Small bugfix concerning 3d 64bit netcdf output format (header)

Bugfix: dt_fixed removed from the restart file, because otherwise, no change
from a fixed to a variable timestep would be possible in restart runs.
(read_var_list, write_var_list)

Bugfix: initial setting of time_coupling in coupled restart runs (time_integration)

advec_particles, check_parameters, cpu_log, data_output_2d, data_output_3d, header, init_3d_model, init_particles, init_ocean, modules, netcdf, prandtl_fluxes, production_e, read_var_list, time_integration, user_last_actions, write_var_list

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163
164<div class="Section1">
165<p style="margin-bottom: 0.0001pt;"><span style="font-size: 36pt; font-family: Thorndale;">PALM </span><span style="font-family: Thorndale;">a <span class="SpellE"><b>pa</b>rallelized</span>
166<b>L</b>ES <span class="SpellE"><b>m</b>odel</span>
167<o:p></o:p></span></p>
168
169<div style="text-align: center;" class="MsoNormal" align="center"><span style="font-family: Thorndale;">
170<hr align="center" size="2" width="100%"></span></div>
171
172<p><span style="font-family: Thorndale;" lang="EN-GB"><br>
173
174</span><span style="font-size: 18pt; font-family: Thorndale;" lang="EN-GB">Documentation </span><span style="font-family: Thorndale;" lang="EN-GB"><o:p></o:p></span></p>
175
176<p><span style="font-family: Thorndale;" lang="EN-GB">Current
177model
178version:&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;3.7<br>
179For date of last change see bottom line of each page. <o:p></o:p></span></p>
180
181<div style="text-align: center;" class="MsoNormal" align="center"><span style="font-family: Thorndale;">
182<hr align="center" size="2" width="100%"></span></div>
183
184<p><span style="font-size: 18pt; font-family: Thorndale;" lang="EN-GB">Table
185of contents</span><span style="font-family: Thorndale;" lang="EN-GB"> <br>
186
187&nbsp; <o:p></o:p></span></p>
188
189<p style="margin-left: 36pt;"><span style="font-family: Thorndale;"><a href="chapter_1.0.html"><span style="" lang="EN-GB">1.0</span></a></span><span style="font-family: Thorndale;" lang="EN-GB"> Introduction <o:p></o:p></span></p>
190
191<p style="margin-left: 36pt;"><span style="font-family: Thorndale;"><a href="chapter_2.0.html"><span style="" lang="EN-GB">2.0</span></a></span><span style="font-family: Thorndale;" lang="EN-GB"> Basic
192techniques of the LES model and its parallelization <o:p></o:p></span></p>
193
194<p style="margin: 5pt 0cm 0.0001pt 36pt;"><span style="font-family: Thorndale;"><a href="chapter_3.0.html"><span style="" lang="EN-GB">3.0</span></a></span><span style="font-family: Thorndale;" lang="EN-GB"> Execution of
195model runs<o:p></o:p></span></p>
196
197<p style="margin: 0cm 0cm 0.0001pt 72pt;"><span style="font-family: Thorndale;"><a href="chapter_3.1.html"><span style="" lang="EN-GB">3.1</span></a></span><span style="font-family: Thorndale;" lang="EN-GB"> Job control
198with <span class="SpellE"><b>mrun</b></span> <br>
199
200</span><span style="font-family: Thorndale;"><a href="chapter_3.2.html"><span style="" lang="EN-GB">3.2</span></a></span><span style="font-family: Thorndale;" lang="EN-GB"> Example of a
201minimum configuration file <br>
202
203</span><span style="font-family: Thorndale;"><a href="chapter_3.3.html"><span style="" lang="EN-GB">3.3</span></a></span><span style="font-family: Thorndale;" lang="EN-GB">
204Initialization and restart runs <br>
205
206</span><span style="font-family: Thorndale;"><a href="chapter_3.4.html"><span style="" lang="EN-GB">3.4</span></a></span><span style="font-family: Thorndale;" lang="EN-GB"> Input and
207output files <br>
208
209</span><span style="font-family: Thorndale;"><a href="chapter_3.5.html"><span style="" lang="EN-GB">3.5</span></a></span><span style="font-family: Thorndale;" lang="EN-GB"> Programming
210of user-defined code extensions <o:p></o:p></span></p>
211
212<p style="margin: 0cm 0cm 0.0001pt 108pt;"><span style="font-family: Thorndale;"><a href="chapter_3.5.1.html"><span style="" lang="EN-GB">3.5.1</span></a></span><span style="font-family: Thorndale;" lang="EN-GB"> Interfaces for
213user-defined&nbsp; code <br>
214
215</span><span style="font-family: Thorndale;"><a href="chapter_3.5.2.html"><span style="" lang="EN-GB">3.5.2</span></a></span><span style="font-family: Thorndale;" lang="EN-GB"> Definition of
216user-defined parameters <br>
217
218</span><span style="font-family: Thorndale;"><a href="chapter_3.5.3.html"><span style="" lang="EN-GB">3.5.3</span></a></span><span style="font-family: Thorndale;" lang="EN-GB"> Definition of
219<span class="SpellE">user-defined subdomains</span></span></p>
220<p style="margin: 0cm 0cm 0.0001pt 108pt;"><span style="font-family: Thorndale;" lang="EN-GB"><span class="SpellE"></span> <a href="chapter_3.5.4.html">3.5.4</a> User-defined output quantities<br>
221
222</span><span style="font-family: Thorndale;"><a href="chapter_3.5.5.html"><span style="" lang="EN-GB">3.5.5</span></a></span><span style="font-family: Thorndale;" lang="EN-GB"> Compiling and linking
223user-defined code <o:p></o:p></span></p>
224
225<p style="margin: 0cm 0cm 5pt 72pt;"><span style="font-family: Thorndale;"><a href="chapter_3.6.html"><span style="" lang="EN-GB">3.6</span></a></span><span style="font-family: Thorndale;" lang="EN-GB"> Interactive mode and
226debugging <br>
227
228</span><span style="font-family: Thorndale;"></span><span style="font-family: Thorndale;" lang="EN-GB"><a href="chapter_3.7.html">3.7</a> Optional
229software packages</span><span style="font-family: Thorndale;" lang="EN-GB"><br>
230
231</span><span style="font-family: Thorndale;"></span><span style="font-family: Thorndale;" lang="EN-GB"><a href="chapter_3.8.html">3.8</a> Coupled model runs<br><a href="chapter_3.9.html">3.9</a> Setup for turbulent inflow</span></p>
232
233<p style="margin: 12pt 0cm 0.0001pt 36pt;"><span style="font-family: Thorndale;"><a href="chapter_4.0.html"><span style="" lang="EN-GB">4.0</span></a></span><span style="font-family: Thorndale;" lang="EN-GB"> Steering
234parameters <o:p></o:p></span></p>
235
236<p style="margin: 0cm 0cm 0.0001pt 72pt;"><span style="font-family: Thorndale;"><a href="chapter_4.1.html"><span style="" lang="EN-GB">4.1</span></a></span><span style="font-family: Thorndale;" lang="EN-GB">
237Initialization parameters <br>
238
239</span><span style="font-family: Thorndale;"><a href="chapter_4.2.html"><span style="" lang="EN-GB">4.2</span></a></span><span style="font-family: Thorndale;" lang="EN-GB"> Runtime
240parameters and package parameters <br>
241
242</span><span style="font-family: Thorndale;"><a href="chapter_4.3.html"><span style="" lang="EN-GB">4.3</span></a></span><span style="font-family: Thorndale;" lang="EN-GB"> User-defined
243parameters <br>
244
245</span><span style="font-family: Thorndale;"><a href="chapter_4.4.html"><span style="" lang="EN-GB">4.4</span></a></span><span style="font-family: Thorndale;" lang="EN-GB"> Examples of parameter sets</span></p>
246<div style="margin-left: 120px;">&nbsp; <a href="chapter_4.4.1.html">4.4.1</a> A minimum parameter set for the CBL<br>
247&nbsp; <a href="chapter_4.4.2.html">4.4.2</a> A parameter set for ocean runs</div>
248<p style="margin: 0cm 0cm 0.0001pt 72pt;"><span style="font-family: Thorndale;" lang="EN-GB">
249</span><span style="font-family: Thorndale;"><a href="chapter_4.5.html"><span style="" lang="EN-GB">4.5</span></a></span><span style="font-family: Thorndale;" lang="EN-GB"> Data analysis and
250visualization <o:p></o:p></span></p>
251
252
253<p style="margin: 0cm 0cm 0.0001pt 108pt;"><span style="font-family: Thorndale;"><a href="chapter_4.5.1.html"><span style="" lang="EN-GB">4.5.1</span></a></span><span style="font-family: Thorndale;" lang="EN-GB"> NetCDF data output<b></b><br>
254
255<a href="chapter_4.5.2.html">4.5.2</a> </span><span style="font-family: Thorndale;" lang="EN-GB">Plots of
256vertical profiles with <b>profil</b></span><br>
257
258<span style="font-family: Thorndale;"><a href="chapter_4.5.3.html"><span style="" lang="EN-GB">4.5.3</span></a></span><span style="font-family: Thorndale;" lang="EN-GB"> Plots of time
259series with <b>profil</b> <br>
260
261</span><span style="font-family: Thorndale;"><a href="chapter_4.5.4.html"><span style="" lang="EN-GB">4.5.4</span></a></span><span style="font-family: Thorndale;" lang="EN-GB"> Plots of 2D
262cross sections with <b>iso2d</b> <br>
263
264</span><span style="font-family: Thorndale;"><a href="chapter_4.5.5.html"><span style="" lang="EN-GB">4.5.5</span></a></span><span style="font-family: Thorndale;" lang="EN-GB"> Plots of 3D
265volume data with <b>AVS</b> <br>
266
267</span><span style="font-family: Thorndale;"><a href="chapter_4.5.6.html"><span style="" lang="EN-GB">4.5.6</span></a></span><span style="font-family: Thorndale;" lang="EN-GB"> Plots of
268compressed 3D volume data with <b>AVS</b><br>
269
270</span><span style="font-family: Thorndale;"><a href="chapter_4.5.7.html"><span style="" lang="EN-GB">4.5.7</span></a></span><span style="font-family: Thorndale;" lang="EN-GB"> Plots of <span class="SpellE">isosurfaces</span>, 2D cross sections and particles
271with <span class="SpellE"><b>dvrp</b></span><o:p></o:p></span></p>
272
273<p style="margin: 0cm 0cm 5pt 72pt;"><span style="font-family: Thorndale;"><a href="chapter_4.6.html"><span style="" lang="EN-GB">4.6</span></a></span><span style="font-family: Thorndale;" lang="EN-GB"> Listing of the steering
274parameters in alphabetical&nbsp; order<o:p></o:p></span></p>
275
276<p style="margin: 12pt 0cm 0.0001pt 36pt;"><span style="font-family: Thorndale;"><a href="chapter_5.0.html"><span style="" lang="EN-GB">5.0</span></a></span><span style="font-family: Thorndale;" lang="EN-GB"> Installation
277of the model <o:p></o:p></span></p>
278
279<p style="margin: 0cm 0cm 5.1pt 72pt;"><span style="font-family: Thorndale;"><a href="chapter_5.1.html">5.1</a>
280Installation of <span class="SpellE">new</span><span class="SpellE"></span> / other
281<span class="SpellE">versions, version update</span></span><span style="font-family: Thorndale;" lang="EN-GB"></span>
282
283</p><p style="margin: 12pt 0cm 0.0001pt 36pt;"><span style="font-family: Thorndale;"><a href="appendix_a.html"><span style="" lang="EN-GB">Appendix A</span></a></span><span style="font-family: Thorndale;" lang="EN-GB"> PALM error messages</span></p>
284<font color="#000000">&nbsp;
285<br>
286
287&nbsp;
288<span style="font-style: italic;">Last change:</span>
289$Id: index.html 392 2009-09-24 10:39:14Z raasch $<br>
290
291</font></div>
292
293</body></html>
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