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+++ palm/trunk/DOC/app/chapter_4.5.2.html	(revision 108)
@@ -1,28 +1,18 @@
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-  <meta content="Siegfried Raasch" name="AUTHOR">
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-<h4 style="line-height: 100%;"><font size="4">4.5.2 Plots of vertical
+<html><head>
+<meta content="text/html; charset=windows-1252" http-equiv="CONTENT-TYPE"><title>PALM chapter 4.5.2</title> <meta content="StarOffice 7 (Win32)" name="GENERATOR"> <meta content="Siegfried Raasch" name="AUTHOR"> <meta content="20041022;12155949" name="CREATED"> <meta content="20041117;11232134" name="CHANGED"> <meta content="parallel LES model" name="KEYWORDS"> <style>
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+
+<body style="direction: ltr;" lang="en-US"><h4 style="line-height: 100%;"><font size="4">4.5.2
+Plots of vertical
 profiles with profil</font></h4>
 <p style="line-height: 100%;">Output of vertical
-profile data is enabled by providing values for the run parameters <a
- href="chapter_4.2.html#dt_dopr"><u>dt_dopr</u></a><span
- style="text-decoration: none;">
+profile data is enabled by providing values for the run parameters <a href="chapter_4.2.html#dt_dopr"><u>dt_dopr</u></a><span style="text-decoration: none;">
 and </span><a href="chapter_4.2.html#data_output_pr">data_output_pr</a>
-<span style="text-decoration: none;">which specify the temporal
+<span style="text-decoration: none;">which specify the
+temporal
 interval of the output times (in s) and the quantities for which output
 is to be made.</span> Output times cannot be defined
@@ -38,41 +28,26 @@
 possible via the
 initialization parameter <a href="chapter_4.1.html#statistic_regions">statistic_regions</a>.</p>
-<p style="line-height: 100%;">Output of desired profiles (temperature,
-velocity, etc.) is steered with the run parameter <a
- href="chapter_4.2.html#data_output_pr">data_output_pr</a>.
+<p style="line-height: 100%;">Output of desired profiles
+(temperature,
+velocity, etc.) is steered with the run parameter <a href="chapter_4.2.html#data_output_pr">data_output_pr</a>.
 If this parameter is not set by the user, then, independently of the
 value of <b>dt_dopr</b>, there will be no output! PALM
 creates the local file <a href="chapter_3.4.html#PLOT1D_DATA">PLOT1D_DATA</a>,
-which must be linked with a permanent file (see e.g. <a
- href="chapter_3.2.html">chapter
+which must be linked with a permanent file (see e.g. <a href="chapter_3.2.html">chapter
 3.2</a>) via a file connection statement in the <b>mrun</b>
 configuration file. At the end of the run the local file is copied
 to this file. Such a statement can look like this: </p>
-<ul>
-  <pre style="margin-bottom: 0.5cm; line-height: 100%;"><font size="2"
- style="font-size: 10pt;">PLOT1D_DATA   out:loc:tr   pr   ~/PLOT/$fname   _pr_in.</font></pre>
-</ul>
-<p style="line-height: 100%;">If the respective <b>mrun</b> call is
+<ul> <pre style="margin-bottom: 0.5cm; line-height: 100%;"><font style="font-size: 10pt;" size="2">PLOT1D_DATA out:loc:tr pr ~/PLOT/$fname _pr_in.</font></pre></ul>
+<p style="line-height: 100%;">If the respective <b>mrun</b>
+call is
 like<br>
-</p>
-<ul>
-  <pre style="margin-bottom: 0.5cm; line-height: 100%;"><font size="2"
- style="font-size: 10pt;">mrun -d test -r pr 
-</font></pre>
-</ul>
-<p style="line-height: 100%;">then the local f<span
- style="text-decoration: none;">ile
-</span><tt><span style="text-decoration: none;"><font size="2"
- style="font-size: 10pt;">PLOT1D_DATA</font></span></tt><span
- style="text-decoration: none;"><font size="2" style="font-size: 10pt;">
-</font>is copied to the permanent file </span><tt><span
- style="text-decoration: none;"><font size="2" style="font-size: 10pt;">~/PLOT/test/test_pr_in</font></span></tt><span
- style="text-decoration: none;">.
-However, the character string <font size="2" style="font-size: 10pt;"></font></span><tt><span
- style="text-decoration: none;"><font size="2" style="font-size: 10pt;">pr</font></span></tt><span
- style="text-decoration: none;"><font size="2" style="font-size: 10pt;"></font>
-activating the file connection statement </span><span
- style="text-decoration: none;">(see third column of the statement) </span><span
- style="text-decoration: none;">must be given in the <b>mrun</b>
+</p><ul> <pre style="margin-bottom: 0.5cm; line-height: 100%;"><font style="font-size: 10pt;" size="2">mrun -d test -r &ldquo;pr&rdquo; &hellip;</font></pre>
+</ul><p style="line-height: 100%;">then the local f<span style="text-decoration: none;">ile
+</span><tt><span style="text-decoration: none;"><font style="font-size: 10pt;" size="2">PLOT1D_DATA</font></span></tt><span style="text-decoration: none;"><font style="font-size: 10pt;" size="2">
+</font>is copied to the permanent file </span><tt><span style="text-decoration: none;"><font style="font-size: 10pt;" size="2">~/PLOT/test/test_pr_in</font></span></tt><span style="text-decoration: none;">.
+However, the character string <font style="font-size: 10pt;" size="2">&ldquo;</font></span><tt><span style="text-decoration: none;"><font style="font-size: 10pt;" size="2">pr</font></span></tt><span style="text-decoration: none;"><font style="font-size: 10pt;" size="2">&rdquo;</font>
+activating the file connection statement </span><span style="text-decoration: none;">(see third column of the
+statement) </span><span style="text-decoration: none;">must
+be given in the <b>mrun</b>
 call as argument of the
 option -r (and/or -o)<b>.</b> If t</span>his is
@@ -83,19 +58,14 @@
 <p style="line-height: 100%;">The created data file can be
 directly used as input file for the plot software <b>profil</b>.
-<b>profil</b> needs another file, the so-called parameter file, which
+<b>profil</b> needs another file, the so-called parameter
+file, which
 specifies the plot layout. This file is created by PALM under the local
 name <a href="chapter_3.4.html#PLOT1D_PAR">PLOT1D_PAR</a>
 and also needs a file connection statement, e.g.: </p>
-<ul>
-  <pre style="margin-bottom: 0.5cm; line-height: 100%;"><font size="2"
- style="font-size: 10pt;">PLOT1D_PAR out:loc:tr    pr ~/PLOT/$fname   _pr_par.</font></pre>
-</ul>
+<ul> <pre style="margin-bottom: 0.5cm; line-height: 100%;"><font style="font-size: 10pt;" size="2">PLOT1D_PAR out:loc:tr pr ~/PLOT/$fname _pr_par.</font></pre></ul>
 <p style="line-height: 100%;">If you are in the directory
-<tt><font size="2" style="font-size: 10pt;">~/PLOT/test</font>,</tt>the
+<tt><font style="font-size: 10pt;" size="2">~/PLOT/test</font>,</tt>the
 data can be plotted by entering </p>
-<ul>
-  <pre style="margin-bottom: 0.5cm; line-height: 100%;"><font size="2"
- style="font-size: 10pt;">profil -d test_pr_in -p test_pr_par</font></pre>
-</ul>
+<ul> <pre style="margin-bottom: 0.5cm; line-height: 100%;"><font style="font-size: 10pt;" size="2">profil -d test_pr_in -p test_pr_par</font></pre></ul>
 <p style="line-height: 100%;">The default plot layout as
 specified in the parameter file is as follows: the profiles of the
@@ -110,7 +80,10 @@
 It is very important to note that only profiles are plottet, which are
 assigned to
-a coordinate system via <b>cross_profiles</b>. If a certain
-variable is selected by <b>data_output_pr</b> but not assigned to a coordinate
-system via <b>cross_profiles</b>, then the appropriate profile data
+a coordinate system via <b>cross_profiles</b>. If a
+certain
+variable is selected by <b>data_output_pr</b> but not
+assigned to a coordinate
+system via <b>cross_profiles</b>, then the appropriate
+profile data
 are written to the file PLOT1D_DATA but they are not plotted! All
 panels for which data
@@ -119,5 +92,6 @@
 to be plottet in a panel but output of potential temperature is not set
 via
-<b>data_output_pr</b>, then the respective panel is not drawn
+<b>data_output_pr</b>, then the respective panel is not
+drawn
 (thus no 'empty' panels appear in the plot). The
 parameters <a href="chapter_4.2.html#profile_columns">profile_columns</a>
@@ -127,10 +101,11 @@
 starting in the top row from left to right.
 If the number of panels to be plotted is larger than the
-product <b>profile_columns</b> * <b>profile_rows</b>, then the plot
+product <b>profile_columns</b> * <b>profile_rows</b>,
+then the plot
 is continued on a second page. </p>
-<p style="line-height: 100%;">During a model run output of profiles to
+<p style="line-height: 100%;">During a model run output of
+profiles to
 file PLOT1D_DATA is usually carried out for several times (as
-determined by <span style="font-weight: bold;">dt_dopr</span>)<font
- size="2" style="font-size: 10pt;">.</font>
+determined by <span style="font-weight: bold;">dt_dopr</span>)<font style="font-size: 10pt;" size="2">.</font>
 All of these profiles belonging to the same quantity are plotted in the
 same panel. The different output times are marked by different line
@@ -141,16 +116,16 @@
 This legend string is taken from file PLOT1D_DATA
 in which a comment line is placed ahead of each profile data. </p>
-<p style="line-height: 100%;">For identification, each plot is
+<p style="line-height: 100%;">For identification, each
+plot is
 provided with a title, which contains the model version number, the
 run identifier (base file name + number of the restart run), the name
 of the host where the run was executed, the date and time of the
 beginning
-of the run as well as the averaging domain (by default: <span
- style="font-style: italic;">'total
-domain'</span>). If the profiles are additionally temporally averaged,
-each panel gets an appropriate sub-label (<span
- style="font-style: italic;">'time
-averaged over
- s'</span>). The axes labels of the x axes of the
+of the run as well as the averaging domain (by default: <span style="font-style: italic;">'total
+domain'</span>). If the profiles are additionally temporally
+averaged,
+each panel gets an appropriate sub-label (<span style="font-style: italic;">'time
+averaged over&hellip; s'</span>). The axes labels of the x
+axes of the
 individual panels are specified with the run parameter
 <a href="chapter_4.2.html#cross_xtext">cross_xtext</a>,
@@ -162,5 +137,6 @@
 and <a href="chapter_4.2.html#cross_normalized_y">cross_normalized_y</a>).
 The respective normalization is noted in the axes label. </p>
-<p style="line-height: 100%;"><font color="#000000">As already
+<p style="line-height: 100%;"><font color="#000000">As
+already
 mentioned, the profiles of a quantity
 for all output times are plotted into the same panel. This is not
@@ -174,54 +150,37 @@
 restart runs. For this
 purpose the configuration file must be changed such that for restart
-runs the profile data are appended to already existing<font
- color="#000000">
+runs the profile data are appended to already existing<font color="#000000">
 data</font> (thus all data are output into one file). Then the
-configuration file has two entries for </font><tt><font color="#000000">PLOT1D_DATA</font></tt><font
- color="#000000">:
-</font></p>
-<ul>
-  <pre style="line-height: 100%;"><font size="2"
- style="font-size: 10pt;">PLOT1D_DATA out:loc:tr  pr# ~/PLOT/$fname _pr_in</font><br><font
- size="2" style="font-size: 10pt;">PLOT1D_DATA out:loc:tra prf ~/PLOT/$fname _pr_in.</font></pre>
-</ul>
-<p style="line-height: 100%;">The first run of the job chain is now </p>
-<ul>
-  <pre style="margin-bottom: 0.5cm; line-height: 100%;"><font size="2"
- style="font-size: 10pt;">mrun - D test - r pr#
-</font></pre>
-</ul>
-<p style="line-height: 100%;">For the restart runs, the "#" in the <span
- style="font-weight: bold;">mrun</span>
+configuration file has two entries for </font><tt><font color="#000000">PLOT1D_DATA</font></tt><font color="#000000">:
+</font></p><ul> <pre style="line-height: 100%;"><font style="font-size: 10pt;" size="2">PLOT1D_DATA out:loc:tr pr# ~/PLOT/$fname _pr_in</font><br><font style="font-size: 10pt;" size="2">PLOT1D_DATA out:loc:tra prf ~/PLOT/$fname _pr_in.</font></pre>
+</ul><p style="line-height: 100%;">The first run of
+the job chain is now </p>
+<ul> <pre style="margin-bottom: 0.5cm; line-height: 100%;"><font style="font-size: 10pt;" size="2">mrun - D test - r &ldquo;pr#&hellip;</font></pre></ul>
+<p style="line-height: 100%;">For the restart runs, the
+"#" in the <span style="font-weight: bold;">mrun</span>
 call is automatically replaced by an "f". At the end of the job chain
 there will only be one data file containing the complete profile data.
 The file connection statement for the parameter file
-<font size="3">PLOT1D_PAR</font> has not changed, thus a new cycle of
+<font size="3">PLOT1D_PAR</font> has not changed,
+thus a new cycle of
 the respective permanent file is created for each run. To plot
 the combined data with the parameter file created by the last run of
 the job chain, the run parameter
 <a href="chapter_4.2.html#use_prior_plot1d_parameters">use_prior_plot1d_parameters</a>
-= <i>.TRUE.</i> must be additionally set for the restart runs. If this
+= <i>.TRUE.</i> must be additionally set for the restart
+runs. If this
 is
 forgotten, the parameter file is useless and the data cannot
 be plotted. </p>
-<p style="line-height: 100%;">The default layout of the plots of
+<p style="line-height: 100%;">The default layout of the
+plots of
 vertical profiles can be changed by editing the
-parameter file. For a detailed description of the <span
- style="font-weight: bold;">profil</span> parameters see the
-<a
- href="http://www.muk.uni-hannover.de/institut/software/profil_beschreibung.html">profil</a>
+parameter file. For a detailed description of the <span style="font-weight: bold;">profil</span> parameters
+see the
+<a href="http://www.muk.uni-hannover.de/institut/software/profil_beschreibung.html">profil</a>
 manual (only in German). <br>
-</p>
-<hr>
-<p style="line-height: 100%;"><br>
-<font color="#000080"><font color="#000080"><a href="chapter_4.5.html"><font
- color="#000080"><img width="32" height="32" border="2" align="bottom"
- name="Grafik1" src="left.gif"></font></a><a href="index.html"><font
- color="#000080"><img width="32" height="32" border="2" align="bottom"
- name="Grafik2" src="up.gif"></font></a><a href="chapter_4.5.3.html"><font
- color="#000080"><img width="32" height="32" border="2" align="bottom"
- name="Grafik3" src="right.gif"></font></a></font></font></p>
+</p><hr>
+<p style="line-height: 100%;"><br><font color="#000080"><font color="#000080"><a href="chapter_4.5.html"><font color="#000080"><img name="Grafik1" src="left.gif" align="bottom" border="2" height="32" width="32"></font></a><a href="index.html"><font color="#000080"><img name="Grafik2" src="up.gif" align="bottom" border="2" height="32" width="32"></font></a><a href="chapter_4.5.3.html"><font color="#000080"><img name="Grafik3" src="right.gif" align="bottom" border="2" height="32" width="32"></font></a></font></font></p>
 <p style="line-height: 100%;"><span style="font-style: italic;">Last
-change:</span> 19/04/05 (SR)&nbsp;</p>
-</body>
-</html>
+change:</span> $Id$&nbsp;</p>
+</body></html>
