Changes between Version 3 and Version 4 of doc/app/palmrun

Timestamp:

Sep 22, 2017 7:34:35 AM (7 years ago)

Author:

raasch

Comment:

--

doc/app/palmrun

@@ -32 +32 @@
 %linker_options      -openmp -fpe0 -O3 -xHost -fp-model source -ftz -fno-alias -ip -nbs -I /muksoft/packages/fftw/3.3.4/include -L/muksoft/....
 %hostfile            auto
-%execute_command     mpiexec  -machinefile hostfile  -n {{MPI_TASKS}}  palm
+%execute_command     mpiexec  -machinefile hostfile  -n {{MPI_TASKS}}  ./palm
 }}}
 * Some further comments concerning specific variables:
  - {{{fast_io_catalog}}} replaces the old variables {{{tmp_user_catalog}}} and {{{tmp_data_catalog}}}. It should be a folder on a file system with fast discs, as typically provided on large computer systems for temporary I/O, e.g. something like {{{/work/...}}}. The temporary working catalog created by {{{palmrun}}} will be in this folder, and your restart data should be put in this folder too. The default {{{.palm.iofiles}}} is using {{{fast_io_catalog}}} for the restart files.
  - For {{{cpp_options}}}, you now have to give ALL switches required, especially {{{-D__parallel}}} to use the parallel version of PALM, which was implicitly set with {{{mrun}}}-option {{{-K parallel}}} before. The {{{-K}}} option has been removed.
- - nvnv
+ - The compiler- and linker-options now require to give ALL the include- and library-paths for the libraries that you intend to use (e.g. MPI, NetCDF, FFTW), if they are not automatically set by a module-software running on your system. Old variables like {{{netcdf_inc}}} or {{{netcdf_lib}}} have been removed from the configuration file.
+ - {{{execute_coammand}}} is required to define the command to execute PALM. This will depend on the MPI-library that you are using.
  
 \\\\