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source: palm/trunk/SOURCE/data_output_mask.f90 @ 4798

Last change on this file since 4798 was 4559, checked in by raasch, 4 years ago
files re-formatted to follow the PALM coding standard
Property svn:keywords set to `Id`
File size: 33.2 KB

Rev	Line
[4246]	1	!> @file data_output_mask.f90
[4559]	2	!--------------------------------------------------------------------------------------------------!
[4246]	3	! This file is part of the PALM model system.
	4	!
[4559]	5	! PALM is free software: you can redistribute it and/or modify it under the terms of the GNU General
	6	! Public License as published by the Free Software Foundation, either version 3 of the License, or
	7	! (at your option) any later version.
[4246]	8	!
[4559]	9	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the
	10	! implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
	11	! Public License for more details.
[4246]	12	!
[4559]	13	! You should have received a copy of the GNU General Public License along with PALM. If not, see
	14	! <http://www.gnu.org/licenses/>.
	15
[4246]	16	!
[4360]	17	! Copyright 1997-2020 Leibniz Universitaet Hannover
[4559]	18	!--------------------------------------------------------------------------------------------------!
[4246]	19	!
	20	! Current revisions:
	21	! -----------------
[4444]	22	!
	23	!
[4246]	24	! Former revisions:
	25	! -----------------
	26	! $Id: data_output_mask.f90 4559 2020-06-11 08:51:48Z schwenkel $
[4559]	27	! file re-formatted to follow the PALM coding standard
	28	!
	29	! 4457 2020-03-11 14:20:43Z raasch
[4457]	30	! use statement for exchange horiz added
[4559]	31	!
[4457]	32	! 4444 2020-03-05 15:59:50Z raasch
[4444]	33	! bugfix: cpp-directives for serial mode added
	34	!
	35	! 4377 2020-01-15 11:10:51Z gronemeier
[4559]	36	! bugfix: set fill value for output according to wall_flags_total_0 for non-terrain following output
[4377]	37	!
	38	! 4360 2020-01-07 11:25:50Z suehring
[4559]	39	! Introduction of wall_flags_total_0, which currently sets bits based on static topography
	40	! information used in wall_flags_static_0
[4377]	41	!
[4346]	42	! 4331 2019-12-10 18:25:02Z suehring
[4331]	43	! Formatting adjustment
[4377]	44	!
[4331]	45	! 4329 2019-12-10 15:46:36Z motisi
[4329]	46	! Renamed wall_flags_0 to wall_flags_static_0
[4377]	47	!
[4329]	48	! 4246 2019-09-30 09:27:52Z pavelkrc
[4182]	49	! Corrected "Former revisions" section
[4377]	50	!
[4182]	51	! 4168 2019-08-16 13:50:17Z suehring
[4246]	52	! Remove variable grid
[4377]	53	!
[4246]	54	! 4167 2019-08-16 11:01:48Z suehring
[4559]	55	! Changed behaviour of masked output over surface to follow terrain and ignore buildings
	56	! (J.Resler, T.Gronemeier)
[4377]	57	!
[4246]	58	! 4069 2019-07-01 14:05:51Z Giersch
[4559]	59	! Masked output running index mid has been introduced as a local variable to avoid runtime error
	60	! (Loop variable has been modified) in time_integration
[4377]	61	!
[4246]	62	! 4039 2019-06-18 10:32:41Z suehring
	63	! Modularize diagnostic output
[4377]	64	!
[4246]	65	! 3994 2019-05-22 18:08:09Z suehring
	66	! output of turbulence intensity added
[4377]	67	!
[4246]	68	! 3665 2019-01-10 08:28:24Z raasch
	69	! unused variables removed
[4377]	70	!
[4246]	71	! 3655 2019-01-07 16:51:22Z knoop
	72	! Fix output time levels (use time_since_reference_point)
	73	!
	74	! 410 2009-12-04 17:05:40Z letzel
	75	! Initial version
	76	!
	77	! Description:
	78	! ------------
	79	!> Masked data output in netCDF format for current mask (current value of mid).
[4559]	80	!--------------------------------------------------------------------------------------------------!
[4246]	81	SUBROUTINE data_output_mask( av, mid )
	82
	83
[4377]	84
[4246]	85	#if defined( __netcdf )
[4559]	86	USE arrays_3d, &
	87	ONLY: d_exner, e, nc, nr, p, pt, q, qc, ql, ql_c, ql_v, qr, rho_ocean, s, sa, tend, u, v, &
	88	vpt, w
[4246]	89
[4559]	90	USE averaging, &
	91	ONLY: e_av, lpt_av, nc_av, nr_av, p_av, pc_av, pr_av, pt_av, q_av, qc_av, ql_av, ql_c_av, &
	92	ql_v_av, ql_vp_av, qv_av, qr_av, rho_ocean_av, s_av, sa_av, u_av, v_av, vpt_av, w_av
[4246]	93
[4559]	94	USE basic_constants_and_equations_mod, &
[4246]	95	ONLY: lv_d_cp
	96
[4559]	97	USE chemistry_model_mod, &
[4246]	98	ONLY: chem_data_output_mask
	99
[4559]	100	USE control_parameters, &
	101	ONLY: air_chemistry, domask, domask_no, domask_time_count, mask_i, mask_j, mask_k, &
	102	mask_size_l, mask_surface, max_masks, message_string, nz_do3d, salsa, &
[4246]	103	time_since_reference_point
	104
[4444]	105	#if defined( __parallel )
[4559]	106	USE control_parameters, &
[4444]	107	ONLY: mask_size, mask_start_l
	108	#endif
	109
[4559]	110	USE cpulog, &
[4457]	111	ONLY: cpu_log, log_point
	112
[4559]	113	USE diagnostic_output_quantities_mod, &
[4246]	114	ONLY: doq_output_mask
[4377]	115
[4559]	116	USE exchange_horiz_mod, &
[4457]	117	ONLY: exchange_horiz
[4246]	118
[4559]	119	USE indices, &
[4346]	120	ONLY: nbgp, nxl, nxr, nyn, nys, nzb, nzt, wall_flags_total_0
[4246]	121
	122	USE kinds
	123
[4559]	124	USE bulk_cloud_model_mod, &
[4246]	125	ONLY: bulk_cloud_model
[4377]	126
[4246]	127	USE NETCDF
[4377]	128
[4559]	129	USE netcdf_interface, &
	130	ONLY: fill_value, id_set_mask, id_var_domask, id_var_time_mask, nc_stat, &
	131	netcdf_data_format, netcdf_handle_error
[4377]	132
[4559]	133	USE particle_attributes, &
	134	ONLY: grid_particles, number_of_particles, particles, particle_advection_start, prt_count
[4377]	135
[4246]	136	USE pegrid
	137
[4559]	138	USE radiation_model_mod, &
[4246]	139	ONLY: radiation, radiation_data_output_mask
	140
[4559]	141	USE salsa_mod, &
[4377]	142	ONLY: salsa_data_output_mask
[4246]	143
	144
	145	IMPLICIT NONE
	146
	147	INTEGER(iwp) :: av !< flag for (non-)average output
[4377]	148	INTEGER(iwp) :: flag_nr !< number of masking flag
[4246]	149	INTEGER(iwp) :: i !< loop index
[4559]	150	INTEGER(iwp) :: im !< loop index for masked variables
[4246]	151	INTEGER(iwp) :: ivar !< variable index
	152	INTEGER(iwp) :: j !< loop index
[4559]	153	INTEGER(iwp) :: jm !< loop index for masked variables
[4246]	154	INTEGER(iwp) :: k !< loop index
	155	INTEGER(iwp) :: kk !< vertical index
[4559]	156	INTEGER(iwp) :: ktt !< k index of highest terrain surface
[4246]	157	INTEGER(iwp) :: mid !< masked output running index
	158	INTEGER(iwp) :: n !< loop index
	159	INTEGER(iwp) :: netcdf_data_format_save !< value of netcdf_data_format
[4444]	160	#if defined( __parallel )
[4559]	161	INTEGER(iwp) :: ind(6) !< index limits (lower/upper bounds) of array 'local_2d'
[4444]	162	INTEGER(iwp) :: ngp !< number of grid points of an output slice
[4246]	163	INTEGER(iwp) :: sender !< PE id of sending PE
[4444]	164	#endif
[4246]	165
	166	LOGICAL :: found !< true if output variable was found
	167	LOGICAL :: resorted !< true if variable is resorted
	168
	169	REAL(wp) :: mean_r !< mean particle radius
	170	REAL(wp) :: s_r2 !< sum( particle-radius**2 )
	171	REAL(wp) :: s_r3 !< sum( particle-radius**3 )
[4377]	172
[4246]	173	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !< output array
	174	#if defined( __parallel )
	175	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: total_pf !< collected output array
	176	#endif
	177	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !< points to array which shall be output
	178
[4559]	179
[4246]	180	!
	181	!-- Return, if nothing to output
	182	IF ( domask_no(mid,av) == 0 ) RETURN
	183
	184	CALL cpu_log (log_point(49),'data_output_mask','start')
	185
	186	!
[4559]	187	!-- Parallel netcdf output is not tested so far for masked data, hence netcdf_data_format is
	188	!-- switched back to non-paralell output.
[4246]	189	netcdf_data_format_save = netcdf_data_format
	190	IF ( netcdf_data_format == 5 ) netcdf_data_format = 3
	191	IF ( netcdf_data_format == 6 ) netcdf_data_format = 4
	192
	193	!
	194	!-- Open output file.
	195	IF ( myid == 0 .OR. netcdf_data_format > 4 ) THEN
	196	CALL check_open( 200+mid+av*max_masks )
[4377]	197	ENDIF
[4246]	198
	199	!
	200	!-- Allocate total and local output arrays.
	201	#if defined( __parallel )
	202	IF ( myid == 0 ) THEN
[4559]	203	ALLOCATE( total_pf( mask_size(mid,1),mask_size(mid,2),mask_size(mid,3) ) )
[4246]	204	ENDIF
	205	#endif
[4559]	206	ALLOCATE( local_pf( mask_size_l(mid,1),mask_size_l(mid,2), mask_size_l(mid,3) ) )
[4246]	207
	208	!
	209	!-- Update the netCDF time axis.
	210	domask_time_count(mid,av) = domask_time_count(mid,av) + 1
	211	IF ( myid == 0 .OR. netcdf_data_format > 4 ) THEN
[4559]	212	nc_stat = NF90_PUT_VAR( id_set_mask(mid,av), id_var_time_mask(mid,av), &
	213	(/ time_since_reference_point /), &
	214	start = (/ domask_time_count(mid,av) /), &
[4246]	215	count = (/ 1 /) )
	216	CALL netcdf_handle_error( 'data_output_mask', 460 )
	217	ENDIF
	218
	219	!
	220	!-- Loop over all variables to be written.
	221	ivar = 1
	222
	223	DO WHILE ( domask(mid,av,ivar)(1:1) /= ' ' )
	224	!
	225	!-- Reallocate local_pf on PE 0 since its shape changes during MPI exchange
[4559]	226	IF ( netcdf_data_format < 5 .AND. myid == 0 .AND. ivar > 1 ) THEN
[4246]	227	DEALLOCATE( local_pf )
[4559]	228	ALLOCATE( local_pf( mask_size_l(mid,1),mask_size_l(mid,2), mask_size_l(mid,3) ) )
[4246]	229	ENDIF
	230	!
[4377]	231	!-- Set masking flag for topography for not resorted arrays
	232	flag_nr = 0
	233	!
[4246]	234	!-- Store the variable chosen.
	235	resorted = .FALSE.
	236	SELECT CASE ( TRIM( domask(mid,av,ivar) ) )
	237
	238	CASE ( 'e' )
	239	IF ( av == 0 ) THEN
	240	to_be_resorted => e
	241	ELSE
	242	to_be_resorted => e_av
	243	ENDIF
	244
	245	CASE ( 'thetal' )
	246	IF ( av == 0 ) THEN
	247	to_be_resorted => pt
	248	ELSE
	249	to_be_resorted => lpt_av
	250	ENDIF
	251
	252	CASE ( 'nc' )
	253	IF ( av == 0 ) THEN
	254	to_be_resorted => nc
	255	ELSE
	256	to_be_resorted => nc_av
	257	ENDIF
	258
	259	CASE ( 'nr' )
	260	IF ( av == 0 ) THEN
	261	to_be_resorted => nr
	262	ELSE
	263	to_be_resorted => nr_av
	264	ENDIF
	265
	266	CASE ( 'p' )
	267	IF ( av == 0 ) THEN
	268	to_be_resorted => p
	269	ELSE
	270	to_be_resorted => p_av
	271	ENDIF
	272
	273	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
	274	IF ( av == 0 ) THEN
	275	tend = prt_count
	276	CALL exchange_horiz( tend, nbgp )
	277	IF ( .NOT. mask_surface(mid) ) THEN
	278	DO i = 1, mask_size_l(mid,1)
	279	DO j = 1, mask_size_l(mid,2)
	280	DO k = 1, mask_size_l(mid,3)
[4559]	281	local_pf(i,j,k) = tend( mask_k(mid,k), mask_j(mid,j), mask_i(mid,i) )
[4246]	282	ENDDO
	283	ENDDO
	284	ENDDO
	285	ELSE
	286	!
	287	!-- Terrain-following masked output
	288	DO i = 1, mask_size_l(mid,1)
	289	DO j = 1, mask_size_l(mid,2)
	290	!-- Get k index of the highest terraing surface
	291	im = mask_i(mid,i)
	292	jm = mask_j(mid,j)
[4559]	293	ktt = MINLOC( MERGE( 1, 0, BTEST( wall_flags_total_0(:,jm,im), 5 ) ), &
[4246]	294	DIM = 1 ) - 1
	295	DO k = 1, mask_size_l(mid,3)
	296	kk = MIN( ktt+mask_k(mid,k), nzt+1 )
	297	!-- Set value if not in building
[4346]	298	IF ( BTEST( wall_flags_total_0(kk,jm,im), 6 ) ) THEN
[4246]	299	local_pf(i,j,k) = fill_value
	300	ELSE
	301	local_pf(i,j,k) = tend(kk,jm,im)
	302	ENDIF
	303	ENDDO
	304	ENDDO
	305	ENDDO
	306	ENDIF
	307	resorted = .TRUE.
	308	ELSE
	309	CALL exchange_horiz( pc_av, nbgp )
	310	to_be_resorted => pc_av
	311	ENDIF
	312
	313	CASE ( 'pr' ) ! mean particle radius (effective radius)
	314	IF ( av == 0 ) THEN
	315	IF ( time_since_reference_point >= particle_advection_start ) THEN
	316	DO i = nxl, nxr
	317	DO j = nys, nyn
	318	DO k = nzb, nz_do3d
	319	number_of_particles = prt_count(k,j,i)
[4559]	320	IF ( number_of_particles <= 0 ) CYCLE
[4246]	321	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	322	s_r2 = 0.0_wp
	323	s_r3 = 0.0_wp
	324	DO n = 1, number_of_particles
	325	IF ( particles(n)%particle_mask ) THEN
[4559]	326	s_r2 = s_r2 + grid_particles(k,j,i)%particles(n)%radius*2 &
[4246]	327	grid_particles(k,j,i)%particles(n)%weight_factor
[4559]	328	s_r3 = s_r3 + grid_particles(k,j,i)%particles(n)%radius*3 &
[4246]	329	grid_particles(k,j,i)%particles(n)%weight_factor
	330	ENDIF
	331	ENDDO
	332	IF ( s_r2 > 0.0_wp ) THEN
	333	mean_r = s_r3 / s_r2
	334	ELSE
	335	mean_r = 0.0_wp
	336	ENDIF
	337	tend(k,j,i) = mean_r
	338	ENDDO
	339	ENDDO
	340	ENDDO
	341	CALL exchange_horiz( tend, nbgp )
	342	ELSE
	343	tend = 0.0_wp
	344	ENDIF
	345	IF ( .NOT. mask_surface(mid) ) THEN
	346	DO i = 1, mask_size_l(mid,1)
	347	DO j = 1, mask_size_l(mid,2)
	348	DO k = 1, mask_size_l(mid,3)
[4559]	349	local_pf(i,j,k) = tend( mask_k(mid,k), mask_j(mid,j), mask_i(mid,i) )
[4246]	350	ENDDO
	351	ENDDO
	352	ENDDO
	353	ELSE
	354	!
	355	!-- Terrain-following masked output
	356	DO i = 1, mask_size_l(mid,1)
	357	DO j = 1, mask_size_l(mid,2)
	358	!-- Get k index of the highest terraing surface
	359	im = mask_i(mid,i)
	360	jm = mask_j(mid,j)
[4559]	361	ktt = MINLOC( MERGE( 1, 0, BTEST( wall_flags_total_0(:,jm,im), 5 )), &
	362	DIM = 1 ) - 1
[4246]	363	DO k = 1, mask_size_l(mid,3)
	364	kk = MIN( ktt+mask_k(mid,k), nzt+1 )
	365	!-- Set value if not in building
[4346]	366	IF ( BTEST( wall_flags_total_0(kk,jm,im), 6 ) ) THEN
[4246]	367	local_pf(i,j,k) = fill_value
	368	ELSE
	369	local_pf(i,j,k) = tend(kk,jm,im)
	370	ENDIF
	371	ENDDO
	372	ENDDO
	373	ENDDO
	374	ENDIF
	375	resorted = .TRUE.
	376	ELSE
	377	CALL exchange_horiz( pr_av, nbgp )
	378	to_be_resorted => pr_av
	379	ENDIF
	380
	381	CASE ( 'theta' )
	382	IF ( av == 0 ) THEN
	383	IF ( .NOT. bulk_cloud_model ) THEN
	384	to_be_resorted => pt
	385	ELSE
	386	IF ( .NOT. mask_surface(mid) ) THEN
	387	DO i = 1, mask_size_l(mid,1)
	388	DO j = 1, mask_size_l(mid,2)
	389	DO k = 1, mask_size_l(mid,3)
[4559]	390	local_pf(i,j,k) = pt( mask_k(mid,k), mask_j(mid,j), mask_i(mid,i) ) &
	391	+ lv_d_cp * d_exner( mask_k(mid,k) ) * &
	392	ql(mask_k(mid,k),mask_j(mid,j),mask_i(mid,i) )
[4246]	393	ENDDO
	394	ENDDO
	395	ENDDO
	396	ELSE
	397	!
	398	!-- Terrain-following masked output
	399	DO i = 1, mask_size_l(mid,1)
	400	DO j = 1, mask_size_l(mid,2)
	401	!-- Get k index of the highest terraing surface
	402	im = mask_i(mid,i)
	403	jm = mask_j(mid,j)
[4559]	404	ktt = MINLOC( MERGE( 1, 0, BTEST( wall_flags_total_0(:,jm,im), 5 )), &
	405	DIM = 1 ) - 1
[4246]	406	DO k = 1, mask_size_l(mid,3)
	407	kk = MIN( ktt+mask_k(mid,k), nzt+1 )
	408	!-- Set value if not in building
[4346]	409	IF ( BTEST( wall_flags_total_0(kk,jm,im), 6 ) ) THEN
[4246]	410	local_pf(i,j,k) = fill_value
	411	ELSE
[4559]	412	local_pf(i,j,k) = pt(kk,jm,im) + &
	413	lv_d_cp * d_exner(kk) * ql(kk,jm,im)
[4246]	414	ENDIF
	415	ENDDO
	416	ENDDO
	417	ENDDO
[4377]	418	ENDIF
[4246]	419	resorted = .TRUE.
	420	ENDIF
	421	ELSE
	422	to_be_resorted => pt_av
	423	ENDIF
	424
	425	CASE ( 'q' )
	426	IF ( av == 0 ) THEN
	427	to_be_resorted => q
	428	ELSE
	429	to_be_resorted => q_av
	430	ENDIF
	431
	432	CASE ( 'qc' )
	433	IF ( av == 0 ) THEN
	434	to_be_resorted => qc
	435	ELSE
	436	to_be_resorted => qc_av
	437	ENDIF
	438
	439	CASE ( 'ql' )
	440	IF ( av == 0 ) THEN
	441	to_be_resorted => ql
	442	ELSE
	443	to_be_resorted => ql_av
	444	ENDIF
	445
	446	CASE ( 'ql_c' )
	447	IF ( av == 0 ) THEN
	448	to_be_resorted => ql_c
	449	ELSE
	450	to_be_resorted => ql_c_av
	451	ENDIF
	452
	453	CASE ( 'ql_v' )
	454	IF ( av == 0 ) THEN
	455	to_be_resorted => ql_v
	456	ELSE
	457	to_be_resorted => ql_v_av
	458	ENDIF
	459
	460	CASE ( 'ql_vp' )
	461	IF ( av == 0 ) THEN
	462	IF ( time_since_reference_point >= particle_advection_start ) THEN
	463	DO i = nxl, nxr
	464	DO j = nys, nyn
	465	DO k = nzb, nz_do3d
	466	number_of_particles = prt_count(k,j,i)
[4559]	467	IF ( number_of_particles <= 0 ) CYCLE
[4246]	468	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	469	DO n = 1, number_of_particles
	470	IF ( particles(n)%particle_mask ) THEN
	471	tend(k,j,i) = tend(k,j,i) + &
[4559]	472	particles(n)%weight_factor / prt_count(k,j,i)
[4246]	473	ENDIF
	474	ENDDO
	475	ENDDO
	476	ENDDO
	477	ENDDO
	478	CALL exchange_horiz( tend, nbgp )
	479	ELSE
	480	tend = 0.0_wp
	481	ENDIF
	482	IF ( .NOT. mask_surface(mid) ) THEN
	483	DO i = 1, mask_size_l(mid,1)
	484	DO j = 1, mask_size_l(mid,2)
	485	DO k = 1, mask_size_l(mid,3)
[4559]	486	local_pf(i,j,k) = tend( mask_k(mid,k), mask_j(mid,j), mask_i(mid,i) )
[4246]	487	ENDDO
	488	ENDDO
	489	ENDDO
	490	ELSE
	491	!
	492	!-- Terrain-following masked output
	493	DO i = 1, mask_size_l(mid,1)
	494	DO j = 1, mask_size_l(mid,2)
	495	!-- Get k index of the highest terraing surface
	496	im = mask_i(mid,i)
	497	jm = mask_j(mid,j)
[4559]	498	ktt = MINLOC( MERGE( 1, 0, BTEST( wall_flags_total_0(:,jm,im), 5 )), &
	499	DIM = 1 ) - 1
[4246]	500	DO k = 1, mask_size_l(mid,3)
	501	kk = MIN( ktt+mask_k(mid,k), nzt+1 )
	502	!-- Set value if not in building
[4346]	503	IF ( BTEST( wall_flags_total_0(kk,jm,im), 6 ) ) THEN
[4246]	504	local_pf(i,j,k) = fill_value
	505	ELSE
	506	local_pf(i,j,k) = tend(kk,jm,im)
	507	ENDIF
	508	ENDDO
	509	ENDDO
	510	ENDDO
	511	ENDIF
	512	resorted = .TRUE.
	513	ELSE
	514	CALL exchange_horiz( ql_vp_av, nbgp )
	515	to_be_resorted => ql_vp_av
	516	ENDIF
	517
	518	CASE ( 'qv' )
	519	IF ( av == 0 ) THEN
	520	IF ( .NOT. mask_surface(mid) ) THEN
	521	DO i = 1, mask_size_l(mid,1)
	522	DO j = 1, mask_size_l(mid,2)
	523	DO k = 1, mask_size_l(mid,3)
[4559]	524	local_pf(i,j,k) = q( mask_k(mid,k), mask_j(mid,j), mask_i(mid,i) ) - &
	525	ql( mask_k(mid,k), mask_j(mid,j), mask_i(mid,i) )
[4246]	526	ENDDO
	527	ENDDO
	528	ENDDO
	529	ELSE
	530	!
	531	!-- Terrain-following masked output
	532	DO i = 1, mask_size_l(mid,1)
	533	DO j = 1, mask_size_l(mid,2)
	534	!-- Get k index of the highest terraing surface
	535	im = mask_i(mid,i)
	536	jm = mask_j(mid,j)
[4559]	537	ktt = MINLOC( MERGE( 1, 0, BTEST( wall_flags_total_0(:,jm,im), 5 )), &
	538	DIM = 1 ) - 1
[4246]	539	DO k = 1, mask_size_l(mid,3)
	540	kk = MIN( ktt+mask_k(mid,k), nzt+1 )
	541	!-- Set value if not in building
[4346]	542	IF ( BTEST( wall_flags_total_0(kk,jm,im), 6 ) ) THEN
[4246]	543	local_pf(i,j,k) = fill_value
	544	ELSE
	545	local_pf(i,j,k) = q(kk,jm,im) - ql(kk,jm,im)
	546	ENDIF
	547	ENDDO
	548	ENDDO
	549	ENDDO
	550	ENDIF
	551	resorted = .TRUE.
	552	ELSE
	553	to_be_resorted => qv_av
	554	ENDIF
	555
	556	CASE ( 'qr' )
	557	IF ( av == 0 ) THEN
	558	to_be_resorted => qr
	559	ELSE
	560	to_be_resorted => qr_av
	561	ENDIF
	562
	563	CASE ( 'rho_sea_water' )
	564	IF ( av == 0 ) THEN
	565	to_be_resorted => rho_ocean
	566	ELSE
	567	to_be_resorted => rho_ocean_av
	568	ENDIF
	569
	570	CASE ( 's' )
	571	IF ( av == 0 ) THEN
	572	to_be_resorted => s
	573	ELSE
	574	to_be_resorted => s_av
	575	ENDIF
	576
	577	CASE ( 'sa' )
	578	IF ( av == 0 ) THEN
	579	to_be_resorted => sa
	580	ELSE
	581	to_be_resorted => sa_av
	582	ENDIF
	583
	584	CASE ( 'u' )
[4377]	585	flag_nr = 1
[4246]	586	IF ( av == 0 ) THEN
	587	to_be_resorted => u
	588	ELSE
	589	to_be_resorted => u_av
	590	ENDIF
	591
	592	CASE ( 'v' )
[4377]	593	flag_nr = 2
[4246]	594	IF ( av == 0 ) THEN
	595	to_be_resorted => v
	596	ELSE
	597	to_be_resorted => v_av
	598	ENDIF
	599
	600	CASE ( 'thetav' )
	601	IF ( av == 0 ) THEN
	602	to_be_resorted => vpt
	603	ELSE
	604	to_be_resorted => vpt_av
	605	ENDIF
	606
	607	CASE ( 'w' )
[4377]	608	flag_nr = 3
[4246]	609	IF ( av == 0 ) THEN
	610	to_be_resorted => w
	611	ELSE
	612	to_be_resorted => w_av
	613	ENDIF
	614
	615	CASE DEFAULT
	616	!
[4559]	617	!-- Set flag to steer output of radiation, land-surface, or user-defined quantities
[4246]	618	found = .FALSE.
	619	!
	620	!-- Radiation quantity
	621	IF ( .NOT. found .AND. radiation ) THEN
[4559]	622	CALL radiation_data_output_mask( av, domask(mid,av,ivar), found, local_pf, mid )
[4246]	623	ENDIF
	624
	625	IF ( .NOT. found .AND. air_chemistry ) THEN
[4559]	626	CALL chem_data_output_mask( av, domask(mid,av,ivar), found, local_pf, mid )
[4246]	627	ENDIF
	628	!
	629	!-- Check for diagnostic quantities
	630	IF ( .NOT. found ) THEN
[4559]	631	CALL doq_output_mask( av, domask(mid,av,ivar), found, local_pf, mid )
[4246]	632	ENDIF
	633	!
	634	!-- SALSA quantities
[4559]	635	IF ( .NOT. found .AND. salsa ) THEN
	636	CALL salsa_data_output_mask( av, domask(mid,av,ivar), found, local_pf, mid )
[4377]	637	ENDIF
[4246]	638	!
	639	!-- User defined quantity
	640	IF ( .NOT. found ) THEN
[4559]	641	CALL user_data_output_mask( av, domask(mid,av,ivar), found, local_pf, mid )
[4246]	642	ENDIF
	643
	644	resorted = .TRUE.
	645
	646	IF ( .NOT. found ) THEN
[4559]	647	WRITE ( message_string, * ) 'no masked output available for: ', &
[4246]	648	TRIM( domask(mid,av,ivar) )
	649	CALL message( 'data_output_mask', 'PA0327', 0, 0, 0, 6, 0 )
	650	ENDIF
	651
	652	END SELECT
	653
	654	!
	655	!-- Resort the array to be output, if not done above
	656	IF ( .NOT. resorted ) THEN
	657	IF ( .NOT. mask_surface(mid) ) THEN
	658	!
	659	!-- Default masked output
	660	DO i = 1, mask_size_l(mid,1)
	661	DO j = 1, mask_size_l(mid,2)
	662	DO k = 1, mask_size_l(mid,3)
[4559]	663	local_pf(i,j,k) = MERGE( to_be_resorted( mask_k(mid,k), &
	664	mask_j(mid,j), &
	665	mask_i(mid,i)), &
	666	REAL( fill_value, KIND = wp ), &
	667	BTEST( wall_flags_total_0( mask_k(mid,k), &
	668	mask_j(mid,j), &
	669	mask_i(mid,i) ), &
	670	flag_nr ) &
	671	)
[4246]	672	ENDDO
	673	ENDDO
	674	ENDDO
	675
	676	ELSE
	677	!
	678	!-- Terrain-following masked output
	679	DO i = 1, mask_size_l(mid,1)
	680	DO j = 1, mask_size_l(mid,2)
	681	!-- Get k index of the highest terraing surface
	682	im = mask_i(mid,i)
	683	jm = mask_j(mid,j)
[4559]	684	ktt = MINLOC( MERGE( 1, 0, BTEST( wall_flags_total_0(:,jm,im), 5 ) ), &
	685	DIM = 1 ) - 1
[4246]	686	DO k = 1, mask_size_l(mid,3)
	687	kk = MIN( ktt+mask_k(mid,k), nzt+1 )
	688	!-- Set value if not in building
[4346]	689	IF ( BTEST( wall_flags_total_0(kk,jm,im), 6 ) ) THEN
[4246]	690	local_pf(i,j,k) = fill_value
	691	ELSE
	692	local_pf(i,j,k) = to_be_resorted(kk,jm,im)
	693	ENDIF
	694	ENDDO
	695	ENDDO
	696	ENDDO
	697
	698	ENDIF
	699	ENDIF
	700
	701	!
	702	!-- I/O block. I/O methods are implemented
	703	!-- (1) for parallel execution
	704	!-- a. with netCDF 4 parallel I/O-enabled library
	705	!-- b. with netCDF 3 library
	706	!-- (2) for serial execution.
	707	!-- The choice of method depends on the correct setting of preprocessor
	708	!-- directives __parallel and __netcdf4_parallel as well as on the parameter
	709	!-- netcdf_data_format.
	710	#if defined( __parallel )
	711	#if defined( __netcdf4_parallel )
	712	IF ( netcdf_data_format > 4 ) THEN
	713	!
	714	!-- (1) a. Parallel I/O using netCDF 4 (not yet tested)
[4559]	715	nc_stat = NF90_PUT_VAR( id_set_mask(mid,av), &
	716	id_var_domask(mid,av,ivar), local_pf, &
	717	start = (/ mask_start_l(mid,1), mask_start_l(mid,2), &
	718	mask_start_l(mid,3), domask_time_count(mid,av) /), &
	719	count = (/ mask_size_l(mid,1), mask_size_l(mid,2), &
	720	mask_size_l(mid,3), 1 /) )
[4246]	721	CALL netcdf_handle_error( 'data_output_mask', 461 )
	722	ELSE
	723	#endif
	724	!
	725	!-- (1) b. Conventional I/O only through PE0
[4559]	726	!-- PE0 receives partial arrays from all processors of the respective mask and outputs them.
	727	!-- Here a barrier has to be set, because otherwise "-MPI- FATAL: Remote protocol queue full"
	728	!-- may occur.
[4246]	729	CALL MPI_BARRIER( comm2d, ierr )
	730
	731	ngp = mask_size_l(mid,1) * mask_size_l(mid,2) * mask_size_l(mid,3)
	732	IF ( myid == 0 ) THEN
	733	!
	734	!-- Local array can be relocated directly.
[4559]	735	total_pf( mask_start_l(mid,1):mask_start_l(mid,1)+mask_size_l(mid,1)-1, &
	736	mask_start_l(mid,2):mask_start_l(mid,2)+mask_size_l(mid,2)-1, &
	737	mask_start_l(mid,3):mask_start_l(mid,3)+mask_size_l(mid,3)-1 ) &
	738	= local_pf
[4246]	739	!
	740	!-- Receive data from all other PEs.
	741	DO n = 1, numprocs-1
	742	!
	743	!-- Receive index limits first, then array.
	744	!-- Index limits are received in arbitrary order from the PEs.
[4559]	745	CALL MPI_RECV( ind(1), 6, MPI_INTEGER, MPI_ANY_SOURCE, 0, comm2d, status, ierr )
[4246]	746	!
	747	!-- Not all PEs have data for the mask
	748	IF ( ind(1) /= -9999 ) THEN
[4559]	749	ngp = ( ind(2)-ind(1)+1 ) * (ind(4)-ind(3)+1 ) * ( ind(6)-ind(5)+1 )
[4246]	750	sender = status(MPI_SOURCE)
	751	DEALLOCATE( local_pf )
[4559]	752	ALLOCATE( local_pf( ind(1):ind(2),ind(3):ind(4),ind(5):ind(6) ) )
	753	CALL MPI_RECV( local_pf(ind(1),ind(3),ind(5)), ngp, MPI_REAL, sender, 1, comm2d,&
	754	status, ierr )
	755	total_pf( ind(1):ind(2),ind(3):ind(4),ind(5):ind(6) ) = local_pf
[4246]	756	ENDIF
	757	ENDDO
	758
[4559]	759	nc_stat = NF90_PUT_VAR( id_set_mask(mid,av), &
	760	id_var_domask(mid,av,ivar), total_pf, &
	761	start = (/ 1, 1, 1, domask_time_count(mid,av) /), &
	762	count = (/ mask_size(mid,1), mask_size(mid,2), &
	763	mask_size(mid,3), 1 /) )
[4246]	764	CALL netcdf_handle_error( 'data_output_mask', 462 )
	765
	766	ELSE
	767	!
[4559]	768	!-- If at least part of the mask resides on the PE, send the index limits for the target
	769	!-- array, otherwise send -9999 to PE0.
	770	IF ( mask_size_l(mid,1) > 0 .AND. mask_size_l(mid,2) > 0 .AND. &
	771	mask_size_l(mid,3) > 0 ) THEN
[4246]	772	ind(1) = mask_start_l(mid,1)
	773	ind(2) = mask_start_l(mid,1) + mask_size_l(mid,1) - 1
	774	ind(3) = mask_start_l(mid,2)
	775	ind(4) = mask_start_l(mid,2) + mask_size_l(mid,2) - 1
	776	ind(5) = mask_start_l(mid,3)
	777	ind(6) = mask_start_l(mid,3) + mask_size_l(mid,3) - 1
	778	ELSE
	779	ind(1) = -9999; ind(2) = -9999
	780	ind(3) = -9999; ind(4) = -9999
	781	ind(5) = -9999; ind(6) = -9999
	782	ENDIF
	783	CALL MPI_SEND( ind(1), 6, MPI_INTEGER, 0, 0, comm2d, ierr )
	784	!
	785	!-- If applicable, send data to PE0.
	786	IF ( ind(1) /= -9999 ) THEN
[4559]	787	CALL MPI_SEND( local_pf(1,1,1), ngp, MPI_REAL, 0, 1, comm2d, ierr )
[4246]	788	ENDIF
	789	ENDIF
	790	!
[4559]	791	!-- A barrier has to be set, because otherwise some PEs may proceed too fast so that PE0 may
	792	!-- receive wrong data on tag 0.
[4246]	793	CALL MPI_BARRIER( comm2d, ierr )
	794	#if defined( __netcdf4_parallel )
	795	ENDIF
	796	#endif
	797	#else
	798	!
[4559]	799	!-- (2) For serial execution of PALM, the single processor (PE0) holds all data and writes them
	800	!-- directly to file.
	801	nc_stat = NF90_PUT_VAR( id_set_mask(mid,av), &
	802	id_var_domask(mid,av,ivar), local_pf, &
	803	start = (/ 1, 1, 1, domask_time_count(mid,av) /), &
	804	count = (/ mask_size_l(mid,1), mask_size_l(mid,2), &
	805	mask_size_l(mid,3), 1 /) )
[4246]	806	CALL netcdf_handle_error( 'data_output_mask', 463 )
	807	#endif
	808
	809	ivar = ivar + 1
	810
	811	ENDDO
	812
	813	!
	814	!-- Deallocate temporary arrays.
	815	DEALLOCATE( local_pf )
	816	#if defined( __parallel )
	817	IF ( myid == 0 ) THEN
	818	DEALLOCATE( total_pf )
	819	ENDIF
	820	#endif
	821
	822	!
	823	!-- Switch back to original format given by user (see beginning of this routine)
	824	netcdf_data_format = netcdf_data_format_save
	825
	826	CALL cpu_log( log_point(49), 'data_output_mask', 'stop' )
	827	#endif
	828
	829
[4559]	830	END SUBROUTINE data_output_mask

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