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data_output_3d.f90 @ 4867

Last change on this file since 4867 was 4828, checked in by Giersch, 4 years ago
Copyright updated to year 2021, interface pmc_sort removed to accelarate the nesting code
Property svn:keywords set to `Id`
File size: 26.6 KB

Rev	Line
[1682]	1	!> @file data_output_3d.f90
[4559]	2	!--------------------------------------------------------------------------------------------------!
[2696]	3	! This file is part of the PALM model system.
[1036]	4	!
[4559]	5	! PALM is free software: you can redistribute it and/or modify it under the terms of the GNU General
	6	! Public License as published by the Free Software Foundation, either version 3 of the License, or
	7	! (at your option) any later version.
[1036]	8	!
[4559]	9	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the
	10	! implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
	11	! Public License for more details.
[1036]	12	!
[4559]	13	! You should have received a copy of the GNU General Public License along with PALM. If not, see
	14	! <http://www.gnu.org/licenses/>.
[1036]	15	!
[4828]	16	! Copyright 1997-2021 Leibniz Universitaet Hannover
[4559]	17	!--------------------------------------------------------------------------------------------------!
[1036]	18	!
[254]	19	! Current revisions:
[1106]	20	! ------------------
[4768]	21	!
	22	!
[3589]	23	! Former revisions:
	24	! -----------------
	25	! $Id: data_output_3d.f90 4828 2021-01-05 11:21:41Z moh.hefny $
[4769]	26	! Keep 32-bit output for netcdf_data_output < 5
	27	!
	28	! 4768 2020-11-02 19:11:23Z suehring
[4768]	29	! Enable 3D data output also with 64-bit precision
	30	!
	31	! 4559 2020-06-11 08:51:48Z raasch
[4559]	32	! file re-formatted to follow the PALM coding standard
	33	!
	34	! 4457 2020-03-11 14:20:43Z raasch
[4457]	35	! use statement for exchange horiz added
[4559]	36	!
[4457]	37	! 4444 2020-03-05 15:59:50Z raasch
[4444]	38	! bugfix: cpp-directives for serial mode added
[4559]	39	!
[4444]	40	! 4360 2020-01-07 11:25:50Z suehring
[4559]	41	! Introduction of wall_flags_total_0, which currently sets bits based on static topography
	42	! information used in wall_flags_static_0
	43	!
[4346]	44	! 4329 2019-12-10 15:46:36Z motisi
[4329]	45	! Renamed wall_flags_0 to wall_flags_static_0
[4559]	46	!
[4329]	47	! 4182 2019-08-22 15:20:23Z scharf
[4182]	48	! Corrected "Former revisions" section
[4559]	49	!
[4182]	50	! 4162 2019-08-16 05:54:29Z raasch
[4162]	51	! bugfix for r4155
[4559]	52	!
[4162]	53	! 4155 2019-08-14 06:25:18Z raasch
[4155]	54	! bugfix for 3d-output in serial mode (ghost points must not be written)
[4559]	55	!
[4155]	56	! 4127 2019-07-30 14:47:10Z suehring
[4559]	57	! Adjustment for top boundary index for plant-canopy model outputs (merge from branch resler)
	58	!
[4127]	59	! 4048 2019-06-21 21:00:21Z knoop
[4048]	60	! Moved tcm_data_output_3d to module_interface
[4559]	61	!
[4048]	62	! 4039 2019-06-18 10:32:41Z suehring
[4039]	63	! modularize diagnostic output
[4559]	64	!
[4039]	65	! 3994 2019-05-22 18:08:09Z suehring
[3994]	66	! output of turbulence intensity added
[4559]	67	!
[3994]	68	! 3987 2019-05-22 09:52:13Z kanani
[3987]	69	! Introduce alternative switch for debug output during timestepping
[4559]	70	!
[3987]	71	! 3885 2019-04-11 11:29:34Z kanani
[4559]	72	! Changes related to global restructuring of location messages and introduction of additional debug
	73	! messages
	74	!
[3885]	75	! 3814 2019-03-26 08:40:31Z pavelkrc
[3766]	76	! unused variables removed
[4559]	77	!
[3766]	78	! 3655 2019-01-07 16:51:22Z knoop
[4559]	79	! Bugfix: use time_since_reference_point instead of simulated_time (relevant when using wall/soil
	80	! spinup)
[3582]	81	!
[4182]	82	! Revision 1.1 1997/09/03 06:29:36 raasch
	83	! Initial revision
	84	!
	85	!
[1]	86	! Description:
	87	! ------------
[1682]	88	!> Output of the 3D-arrays in netCDF and/or AVS format.
[4559]	89	!--------------------------------------------------------------------------------------------------!
[1682]	90	SUBROUTINE data_output_3d( av )
[1]	91
[4559]	92
	93	USE arrays_3d, &
[3766]	94	ONLY: d_exner, e, p, pt, q, ql, ql_c, ql_v, s, tend, u, v, vpt, w
[3274]	95
[1]	96	USE averaging
[3274]	97
[4559]	98	USE basic_constants_and_equations_mod, &
[3274]	99	ONLY: lv_d_cp
	100
[4559]	101	USE bulk_cloud_model_mod, &
[3637]	102	ONLY: bulk_cloud_model
[3274]	103
[4559]	104	USE control_parameters, &
	105	ONLY: debug_output_timestep, do3d, do3d_no, do3d_time_count, land_surface, message_string,&
	106	ntdim_3d, nz_do3d, plant_canopy, psolver, time_since_reference_point, urban_surface,&
[4127]	107	varnamelength
[3274]	108
[4444]	109	#if defined( __parallel )
[4559]	110	USE control_parameters, &
[4444]	111	ONLY: io_blocks, io_group
	112	#endif
	113
[4559]	114	USE cpulog, &
	115	ONLY: cpu_log, log_point
[2817]	116
[4559]	117	USE exchange_horiz_mod, &
[4457]	118	ONLY: exchange_horiz
	119
[4559]	120	USE indices, &
	121	ONLY: nbgp, nxl, nxlg, nxr, nxrg, nyn, nyng, nys, nysg, nzb, nzt, wall_flags_total_0
[4444]	122
	123	#if ! defined( __parallel )
[4559]	124	USE indices, &
[4444]	125	ONLY: nx, ny
[3405]	126	#endif
[3274]	127
[1320]	128	USE kinds
[3274]	129
[4559]	130	USE land_surface_model_mod, &
[2232]	131	ONLY: lsm_data_output_3d, nzb_soil, nzt_soil
[1551]	132
[4559]	133	USE module_interface, &
[3637]	134	ONLY: module_interface_data_output_3d
	135
[1783]	136	#if defined( __netcdf )
	137	USE NETCDF
	138	#endif
	139
[4559]	140	USE netcdf_interface, &
	141	ONLY: fill_value, id_set_3d, id_var_do3d, id_var_time_3d, nc_stat, netcdf_data_format, &
	142	netcdf_handle_error
[3294]	143
[4559]	144	USE particle_attributes, &
	145	ONLY: grid_particles, number_of_particles, particles, particle_advection_start, prt_count
[3637]	146
[1]	147	USE pegrid
	148
[4559]	149	USE plant_canopy_model_mod, &
[4127]	150	ONLY: pch_index
	151
[4559]	152	USE radiation_model_mod, &
[3814]	153	ONLY: nz_urban_b, nz_urban_t
[1585]	154
[4559]	155	USE urban_surface_mod, &
[2696]	156	ONLY: usm_data_output_3d
[1585]	157
[2007]	158
[1]	159	IMPLICIT NONE
	160
[3554]	161	INTEGER(iwp) :: av !< flag for (non-)average output
[2696]	162	INTEGER(iwp) :: flag_nr !< number of masking flag
[3554]	163	INTEGER(iwp) :: i !< loop index
	164	INTEGER(iwp) :: ivar !< variable index
	165	INTEGER(iwp) :: j !< loop index
	166	INTEGER(iwp) :: k !< loop index
	167	INTEGER(iwp) :: n !< loop index
[1682]	168	INTEGER(iwp) :: nzb_do !< vertical lower limit for data output
	169	INTEGER(iwp) :: nzt_do !< vertical upper limit for data output
[1]	170
[3554]	171	LOGICAL :: found !< true if output variable was found
	172	LOGICAL :: resorted !< true if variable is resorted
[1]	173
[3554]	174	REAL(wp) :: mean_r !< mean particle radius
	175	REAL(wp) :: s_r2 !< sum( particle-radius**2 )
	176	REAL(wp) :: s_r3 !< sum( particle-radius**3 )
[1]	177
[4768]	178	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !< output array
[1]	179
[4559]	180	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !< pointer to array which shall be
	181	!< output
[1]	182
[2011]	183	CHARACTER (LEN=varnamelength) :: trimvar !< TRIM of output-variable string
[2007]	184
[1]	185	!
	186	!-- Return, if nothing to output
	187	IF ( do3d_no(av) == 0 ) RETURN
	188
[3987]	189	IF ( debug_output_timestep ) CALL debug_message( 'data_output_3d', 'start' )
[3885]	190
[1]	191	CALL cpu_log (log_point(14),'data_output_3d','start')
	192
	193	!
	194	!-- Open output file.
[4559]	195	!-- For classic or 64bit netCDF output on more than one PE, each PE opens its own file and writes
	196	!-- the data of its subdomain in binary format. After the run, these files are combined to one
	197	!-- NetCDF file by combine_plot_fields.
[1031]	198	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
[1327]	199	IF ( netcdf_data_format < 5 ) THEN
[2967]	200	#if defined( __parallel )
[1327]	201	CALL check_open( 30 )
[2967]	202	#endif
[1327]	203	IF ( myid == 0 ) CALL check_open( 106+av*10 )
[493]	204	ELSE
[1327]	205	CALL check_open( 106+av*10 )
[493]	206	ENDIF
[1]	207
	208	!
[4559]	209	!-- For parallel netcdf output the time axis must be limited. Return, if this limit is exceeded.
	210	!-- This could be the case, if the simulated time exceeds the given end time by the length of the
	211	!-- given output interval.
[1745]	212	IF ( netcdf_data_format > 4 ) THEN
	213	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
[4559]	214	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
	215	time_since_reference_point, 's because the maximum ', &
	216	'number of output time levels is ', &
[1745]	217	'exceeded.'
	218	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
	219	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
	220	RETURN
	221	ENDIF
	222	ENDIF
	223
	224	!
[4559]	225	!-- Update the netCDF time axis.
	226	!-- In case of parallel output, this is only done by PE0 to increase the performance.
[1]	227	#if defined( __netcdf )
[1308]	228	do3d_time_count(av) = do3d_time_count(av) + 1
	229	IF ( myid == 0 ) THEN
[4559]	230	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
	231	(/ time_since_reference_point /), &
	232	start = (/ do3d_time_count(av) /), &
[1327]	233	count = (/ 1 /) )
[1783]	234	CALL netcdf_handle_error( 'data_output_3d', 376 )
[1]	235	ENDIF
	236	#endif
	237
	238	!
	239	!-- Loop over all variables to be written.
[3554]	240	ivar = 1
[1]	241
[3554]	242	DO WHILE ( do3d(av,ivar)(1:1) /= ' ' )
[2007]	243
[1]	244	!
[3637]	245	!-- Initiate found flag and resorting flag
	246	found = .FALSE.
	247	resorted = .FALSE.
[4127]	248	trimvar = TRIM( do3d(av,ivar) )
	249
[3637]	250	!
[4559]	251	!-- Temporary solution to account for data output within the new urban surface model
	252	!-- (urban_surface_mod.f90), see also SELECT CASE ( trimvar ).
[1]	253	!-- Store the array chosen on the temporary array.
[3637]	254	nzb_do = nzb
[4127]	255	!
[4559]	256	!-- Set top index for 3D output. Note in case of plant-canopy model these index is determined by
	257	!-- pch_index.
[4127]	258	IF ( plant_canopy .AND. trimvar(1:4) == 'pcm_' ) THEN
	259	nzt_do = pch_index
	260	ELSE
	261	nzt_do = nz_do3d
	262	ENDIF
[3637]	263
[1551]	264	!
	265	!-- Allocate a temporary array with the desired output dimensions.
[2512]	266	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	267	!
	268	!-- Before each output, set array local_pf to fill value
[4768]	269	local_pf = REAL( fill_value, KIND=wp )
[2696]	270	!
	271	!-- Set masking flag for topography for not resorted arrays
	272	flag_nr = 0
[1551]	273
[2007]	274	SELECT CASE ( trimvar )
[1]	275
	276	CASE ( 'e' )
	277	IF ( av == 0 ) THEN
	278	to_be_resorted => e
	279	ELSE
[4559]	280	IF ( .NOT. ALLOCATED( e_av ) ) THEN
[3004]	281	ALLOCATE( e_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	282	e_av = REAL( fill_value, KIND = wp )
	283	ENDIF
[1]	284	to_be_resorted => e_av
	285	ENDIF
	286
[3421]	287	CASE ( 'thetal' )
[771]	288	IF ( av == 0 ) THEN
	289	to_be_resorted => pt
	290	ELSE
[4559]	291	IF ( .NOT. ALLOCATED( lpt_av ) ) THEN
[3004]	292	ALLOCATE( lpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	293	lpt_av = REAL( fill_value, KIND = wp )
	294	ENDIF
[771]	295	to_be_resorted => lpt_av
	296	ENDIF
	297
[1]	298	CASE ( 'p' )
	299	IF ( av == 0 ) THEN
[727]	300	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
[1]	301	to_be_resorted => p
	302	ELSE
[4559]	303	IF ( .NOT. ALLOCATED( p_av ) ) THEN
[3004]	304	ALLOCATE( p_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	305	p_av = REAL( fill_value, KIND = wp )
	306	ENDIF
[727]	307	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
[1]	308	to_be_resorted => p_av
	309	ENDIF
	310
	311	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
	312	IF ( av == 0 ) THEN
[3646]	313	IF ( time_since_reference_point >= particle_advection_start ) THEN
[1359]	314	tend = prt_count
	315	ELSE
	316	tend = 0.0_wp
	317	ENDIF
[2512]	318	DO i = nxl, nxr
	319	DO j = nys, nyn
[1551]	320	DO k = nzb_do, nzt_do
[1]	321	local_pf(i,j,k) = tend(k,j,i)
	322	ENDDO
	323	ENDDO
	324	ENDDO
	325	resorted = .TRUE.
	326	ELSE
[4559]	327	IF ( .NOT. ALLOCATED( pc_av ) ) THEN
[3004]	328	ALLOCATE( pc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	329	pc_av = REAL( fill_value, KIND = wp )
	330	ENDIF
[1]	331	to_be_resorted => pc_av
	332	ENDIF
	333
[1359]	334	CASE ( 'pr' ) ! mean particle radius (effective radius)
[1]	335	IF ( av == 0 ) THEN
[3646]	336	IF ( time_since_reference_point >= particle_advection_start ) THEN
[1359]	337	DO i = nxl, nxr
	338	DO j = nys, nyn
[1551]	339	DO k = nzb_do, nzt_do
[1359]	340	number_of_particles = prt_count(k,j,i)
[4559]	341	IF ( number_of_particles <= 0 ) CYCLE
[1359]	342	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	343	s_r2 = 0.0_wp
	344	s_r3 = 0.0_wp
	345	DO n = 1, number_of_particles
	346	IF ( particles(n)%particle_mask ) THEN
[4559]	347	s_r2 = s_r2 + particles(n)%radius*2 particles(n)%weight_factor
	348	s_r3 = s_r3 + particles(n)%radius*3 particles(n)%weight_factor
[1359]	349	ENDIF
	350	ENDDO
	351	IF ( s_r2 > 0.0_wp ) THEN
	352	mean_r = s_r3 / s_r2
	353	ELSE
	354	mean_r = 0.0_wp
	355	ENDIF
	356	tend(k,j,i) = mean_r
[1]	357	ENDDO
	358	ENDDO
	359	ENDDO
[1359]	360	ELSE
	361	tend = 0.0_wp
	362	ENDIF
[2512]	363	DO i = nxl, nxr
	364	DO j = nys, nyn
[1551]	365	DO k = nzb_do, nzt_do
[1]	366	local_pf(i,j,k) = tend(k,j,i)
	367	ENDDO
	368	ENDDO
	369	ENDDO
	370	resorted = .TRUE.
	371	ELSE
[4559]	372	IF ( .NOT. ALLOCATED( pr_av ) ) THEN
[3004]	373	ALLOCATE( pr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	374	pr_av = REAL( fill_value, KIND = wp )
	375	ENDIF
[1]	376	to_be_resorted => pr_av
	377	ENDIF
	378
[3421]	379	CASE ( 'theta' )
[1]	380	IF ( av == 0 ) THEN
[4559]	381	IF ( .NOT. bulk_cloud_model ) THEN
[1]	382	to_be_resorted => pt
	383	ELSE
[2512]	384	DO i = nxl, nxr
	385	DO j = nys, nyn
[1551]	386	DO k = nzb_do, nzt_do
[4559]	387	local_pf(i,j,k) = pt(k,j,i) + lv_d_cp * d_exner(k) * ql(k,j,i)
[1]	388	ENDDO
	389	ENDDO
	390	ENDDO
	391	resorted = .TRUE.
	392	ENDIF
	393	ELSE
[4559]	394	IF ( .NOT. ALLOCATED( pt_av ) ) THEN
[3004]	395	ALLOCATE( pt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	396	pt_av = REAL( fill_value, KIND = wp )
	397	ENDIF
[1]	398	to_be_resorted => pt_av
	399	ENDIF
	400
	401	CASE ( 'q' )
	402	IF ( av == 0 ) THEN
	403	to_be_resorted => q
	404	ELSE
[4559]	405	IF ( .NOT. ALLOCATED( q_av ) ) THEN
[3004]	406	ALLOCATE( q_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	407	q_av = REAL( fill_value, KIND = wp )
	408	ENDIF
[1]	409	to_be_resorted => q_av
	410	ENDIF
[691]	411
[1053]	412	CASE ( 'ql' )
	413	IF ( av == 0 ) THEN
[1115]	414	to_be_resorted => ql
[1053]	415	ELSE
[4559]	416	IF ( .NOT. ALLOCATED( ql_av ) ) THEN
[3004]	417	ALLOCATE( ql_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	418	ql_av = REAL( fill_value, KIND = wp )
	419	ENDIF
[1115]	420	to_be_resorted => ql_av
[1053]	421	ENDIF
	422
[1]	423	CASE ( 'ql_c' )
	424	IF ( av == 0 ) THEN
	425	to_be_resorted => ql_c
	426	ELSE
[4559]	427	IF ( .NOT. ALLOCATED( ql_c_av ) ) THEN
[3004]	428	ALLOCATE( ql_c_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	429	ql_c_av = REAL( fill_value, KIND = wp )
	430	ENDIF
[1]	431	to_be_resorted => ql_c_av
	432	ENDIF
	433
	434	CASE ( 'ql_v' )
	435	IF ( av == 0 ) THEN
	436	to_be_resorted => ql_v
	437	ELSE
[4559]	438	IF ( .NOT. ALLOCATED( ql_v_av ) ) THEN
[3004]	439	ALLOCATE( ql_v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	440	ql_v_av = REAL( fill_value, KIND = wp )
	441	ENDIF
[1]	442	to_be_resorted => ql_v_av
	443	ENDIF
	444
	445	CASE ( 'ql_vp' )
	446	IF ( av == 0 ) THEN
[3646]	447	IF ( time_since_reference_point >= particle_advection_start ) THEN
[1359]	448	DO i = nxl, nxr
	449	DO j = nys, nyn
[1551]	450	DO k = nzb_do, nzt_do
[1359]	451	number_of_particles = prt_count(k,j,i)
	452	IF (number_of_particles <= 0) CYCLE
	453	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	454	DO n = 1, number_of_particles
	455	IF ( particles(n)%particle_mask ) THEN
[4559]	456	tend(k,j,i) = tend(k,j,i) + &
	457	particles(n)%weight_factor / prt_count(k,j,i)
[1359]	458	ENDIF
	459	ENDDO
[1007]	460	ENDDO
	461	ENDDO
	462	ENDDO
[1359]	463	ELSE
	464	tend = 0.0_wp
	465	ENDIF
[2512]	466	DO i = nxl, nxr
	467	DO j = nys, nyn
[1551]	468	DO k = nzb_do, nzt_do
[1007]	469	local_pf(i,j,k) = tend(k,j,i)
	470	ENDDO
	471	ENDDO
	472	ENDDO
	473	resorted = .TRUE.
[1]	474	ELSE
[4559]	475	IF ( .NOT. ALLOCATED( ql_vp_av ) ) THEN
[3004]	476	ALLOCATE( ql_vp_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	477	ql_vp_av = REAL( fill_value, KIND = wp )
	478	ENDIF
[1]	479	to_be_resorted => ql_vp_av
	480	ENDIF
	481
	482	CASE ( 'qv' )
	483	IF ( av == 0 ) THEN
[2512]	484	DO i = nxl, nxr
	485	DO j = nys, nyn
[1551]	486	DO k = nzb_do, nzt_do
[1]	487	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
	488	ENDDO
	489	ENDDO
	490	ENDDO
	491	resorted = .TRUE.
	492	ELSE
[4559]	493	IF ( .NOT. ALLOCATED( qv_av ) ) THEN
[3004]	494	ALLOCATE( qv_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	495	qv_av = REAL( fill_value, KIND = wp )
	496	ENDIF
[1]	497	to_be_resorted => qv_av
	498	ENDIF
	499
	500	CASE ( 's' )
	501	IF ( av == 0 ) THEN
[1960]	502	to_be_resorted => s
[1]	503	ELSE
[4559]	504	IF ( .NOT. ALLOCATED( s_av ) ) THEN
[3004]	505	ALLOCATE( s_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	506	s_av = REAL( fill_value, KIND = wp )
	507	ENDIF
[355]	508	to_be_resorted => s_av
[1]	509	ENDIF
[691]	510
[1]	511	CASE ( 'u' )
[2696]	512	flag_nr = 1
[1]	513	IF ( av == 0 ) THEN
	514	to_be_resorted => u
	515	ELSE
[4559]	516	IF ( .NOT. ALLOCATED( u_av ) ) THEN
[3004]	517	ALLOCATE( u_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	518	u_av = REAL( fill_value, KIND = wp )
	519	ENDIF
[1]	520	to_be_resorted => u_av
	521	ENDIF
	522
	523	CASE ( 'v' )
[2696]	524	flag_nr = 2
[1]	525	IF ( av == 0 ) THEN
	526	to_be_resorted => v
	527	ELSE
[4559]	528	IF ( .NOT. ALLOCATED( v_av ) ) THEN
[3004]	529	ALLOCATE( v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	530	v_av = REAL( fill_value, KIND = wp )
	531	ENDIF
[1]	532	to_be_resorted => v_av
	533	ENDIF
	534
[3421]	535	CASE ( 'thetav' )
[1]	536	IF ( av == 0 ) THEN
	537	to_be_resorted => vpt
	538	ELSE
[4559]	539	IF ( .NOT. ALLOCATED( vpt_av ) ) THEN
[3004]	540	ALLOCATE( vpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	541	vpt_av = REAL( fill_value, KIND = wp )
	542	ENDIF
[1]	543	to_be_resorted => vpt_av
	544	ENDIF
	545
	546	CASE ( 'w' )
[2696]	547	flag_nr = 3
[1]	548	IF ( av == 0 ) THEN
	549	to_be_resorted => w
	550	ELSE
[4559]	551	IF ( .NOT. ALLOCATED( w_av ) ) THEN
[3004]	552	ALLOCATE( w_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	553	w_av = REAL( fill_value, KIND = wp )
	554	ENDIF
[1]	555	to_be_resorted => w_av
	556	ENDIF
	557
	558	CASE DEFAULT
[3637]	559	!
	560	!-- Quantities of other modules
	561	IF ( .NOT. found ) THEN
[4559]	562	CALL module_interface_data_output_3d( av, trimvar, found, local_pf, fill_value, &
	563	resorted, nzb_do, nzt_do &
	564	)
[3294]	565	ENDIF
	566
[1972]	567	!
[3637]	568	!-- Temporary workaround: ToDo: refactor local_pf allocation
	569	IF ( .NOT. found .AND. urban_surface .AND. trimvar(1:4) == 'usm_' ) THEN
	570	!
	571	!-- For urban model quantities, it is required to re-allocate local_pf
[3814]	572	nzb_do = nz_urban_b
	573	nzt_do = nz_urban_t
[1972]	574
	575	DEALLOCATE ( local_pf )
[2512]	576	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	577	local_pf = fill_value
[1972]	578
[4559]	579	CALL usm_data_output_3d( av, trimvar, found, local_pf, nzb_do, nzt_do )
[1972]	580	resorted = .TRUE.
[1976]	581
	582	!
	583	!-- If no soil model variable was found, re-allocate local_pf
	584	IF ( .NOT. found ) THEN
	585	nzb_do = nzb
	586	nzt_do = nz_do3d
	587
	588	DEALLOCATE ( local_pf )
[3637]	589	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[1976]	590	ENDIF
	591
[1972]	592	ENDIF
	593
[3637]	594	!
	595	!-- Temporary workaround: ToDo: refactor local_pf allocation
	596	IF ( .NOT. found .AND. land_surface ) THEN
	597	!
	598	!-- For soil model quantities, it is required to re-allocate local_pf
	599	nzb_do = nzb_soil
	600	nzt_do = nzt_soil
[1976]	601
[3637]	602	DEALLOCATE ( local_pf )
	603	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
	604	local_pf = fill_value
[2817]	605
[3637]	606	CALL lsm_data_output_3d( av, trimvar, found, local_pf )
[2696]	607	resorted = .TRUE.
	608
[3467]	609	!
[3637]	610	!-- If no soil model variable was found, re-allocate local_pf
	611	IF ( .NOT. found ) THEN
	612	nzb_do = nzb
	613	nzt_do = nz_do3d
[2209]	614
[3637]	615	DEALLOCATE ( local_pf )
	616	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
	617	ENDIF
[3448]	618
[1972]	619	ENDIF
[1]	620
[254]	621	IF ( .NOT. found ) THEN
[4559]	622	message_string = 'no output available for: ' // TRIM( do3d(av,ivar) )
[254]	623	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
[1]	624	ENDIF
	625
	626	END SELECT
	627
	628	!
	629	!-- Resort the array to be output, if not done above
	630	IF ( .NOT. resorted ) THEN
[2512]	631	DO i = nxl, nxr
	632	DO j = nys, nyn
[1551]	633	DO k = nzb_do, nzt_do
[4559]	634	local_pf(i,j,k) = MERGE( to_be_resorted(k,j,i), &
	635	REAL( fill_value, KIND = wp ), &
	636	BTEST( wall_flags_total_0(k,j,i), flag_nr ) )
[1]	637	ENDDO
	638	ENDDO
	639	ENDDO
	640	ENDIF
	641
	642	!
[1327]	643	!-- Output of the 3D-array
	644	#if defined( __parallel )
	645	IF ( netcdf_data_format < 5 ) THEN
[1]	646	!
[4559]	647	!-- Non-parallel netCDF output. Data is output in parallel in FORTRAN binary format here, and
	648	!-- later collected into one file by combine_plot_fields
[1327]	649	IF ( myid == 0 ) THEN
[4559]	650	WRITE ( 30 ) time_since_reference_point, do3d_time_count(av), av
[1]	651	ENDIF
[1327]	652	DO i = 0, io_blocks-1
	653	IF ( i == io_group ) THEN
[2512]	654	WRITE ( 30 ) nxl, nxr, nys, nyn, nzb_do, nzt_do
[4769]	655	WRITE ( 30 ) REAL( local_pf(:,:,nzb_do:nzt_do), KIND = sp )
[1327]	656	ENDIF
[1972]	657
[1327]	658	CALL MPI_BARRIER( comm2d, ierr )
[1972]	659
[1327]	660	ENDDO
[559]	661
[1327]	662	ELSE
[646]	663	#if defined( __netcdf )
[493]	664	!
[1327]	665	!-- Parallel output in netCDF4/HDF5 format.
[2512]	666	! IF ( nxr == nx .AND. nyn /= ny ) THEN
[3554]	667	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
[2512]	668	! local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), &
	669	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	670	! count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
	671	! ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
[3554]	672	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
[2512]	673	! local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), &
	674	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	675	! count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	676	! ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
[3554]	677	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
[2512]	678	! local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), &
	679	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	680	! count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	681	! ELSE
[4768]	682	!
	683	!-- Call for parallel runs
	684	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
	685	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
	686	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	687	count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) &
	688	)
[2512]	689	! ENDIF
[1783]	690	CALL netcdf_handle_error( 'data_output_3d', 386 )
[646]	691	#endif
[1327]	692	ENDIF
[1]	693	#else
	694	#if defined( __netcdf )
[4768]	695	!
	696	!-- Call for non-parallel runs
[4559]	697	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
	698	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
	699	start = (/ 1, 1, 1, do3d_time_count(av) /), &
	700	count = (/ nx+1, ny+1, nzt_do-nzb_do+1, 1 /) )
[1783]	701	CALL netcdf_handle_error( 'data_output_3d', 446 )
[1]	702	#endif
	703	#endif
	704
[3554]	705	ivar = ivar + 1
[1]	706
	707	!
[1551]	708	!-- Deallocate temporary array
	709	DEALLOCATE ( local_pf )
[1]	710
[1551]	711	ENDDO
[1]	712
[1318]	713	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
[1]	714
[3987]	715	IF ( debug_output_timestep ) CALL debug_message( 'data_output_3d', 'end' )
[3885]	716
[3987]	717
[1]	718	END SUBROUTINE data_output_3d

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source: palm/trunk/SOURCE/data_output_3d.f90 @ 4867

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