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palmbuild @ 4874

Last change on this file since 4874 was 4843, checked in by raasch, 4 years ago
local namelist parameter added to switch off the module although the respective module namelist appears in the namelist file, further copyright updates
Property svn:executable set to ``* Property svn:keywords set to `Id Rev`
File size: 36.3 KB

Line
1	#!/bin/bash
2
3	# palmbuild - script for compiling the PALM code and its utility programs
4
5	#------------------------------------------------------------------------------#
6	# This file is part of the PALM model system.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 2017-2021 Leibniz Universitaet Hannover
20	#------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	#
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: palmbuild 4843 2021-01-15 15:22:11Z raasch $
29	# Bugfix: do not treat empty module_commands as error
30	#
31	# 4809 2020-12-03 16:37:20Z gronemeier
32	# Abort if the execution of the module commands raise an error
33	#
34	# 4556 2020-06-08 06:29:28Z raasch
35	# bugfix for determining the ssh-key givn in the configuration file
36	#
37	# 4481 2020-03-31 18:55:54Z maronga
38	# Abort if SOURCES_FOR_RUN catalog cannot be created
39	#
40	# 4082 2019-07-10 14:42:00Z raasch
41	# bugfix for executing module commands and for interpreting linker options
42	# on local machines
43	#
44	# 3756 2019-02-20 11:24:32Z suehring
45	# Disable compilation of postprocessing tool for surface output, until
46	# crashes with unexpected segmentation faults with intel compiler are solved.
47	#
48	# 3725 2019-02-07 10:11:02Z raasch
49	# ssh-calls for compilations on remote systems modified to avoid output
50	# of login messages on specific systems changed again (reverted as before r3549)
51	#
52	# 3549 2018-11-21 15:44:44Z raasch
53	# ssh-calls for compilations on remote systems modified to avoid output
54	# of login messages on specific systems
55	#
56	# 3534 2018-11-19 15:35:16Z raasch
57	# build of inifor added,
58	# ssh-calls rearranged to avoid output of system/user-profile messages
59	#
60	# 3523 2018-11-13 16:09:31Z suehring
61	# Enable compilation of post-processing tool for surface output - interface
62	# for posix conform sytemcalls is implemented.
63	#
64	# 3499 2018-11-07 10:55:15Z suehring
65	# Temporarily avoid compilation of post-processing tool for surface output
66	# until a workaround for compiler-specific intrinsic functions is found.
67	#
68	# 3494 2018-11-06 14:51:27Z suehring
69	# Add tool for surface-output post-processing
70	#
71	# 3455 2018-10-30 14:12:31Z raasch
72	# options -h and -d renamed -c and -r, respectively
73	#
74	# 3312 2018-10-06 14:15:46Z knoop
75	# "host identifier" in header output renamed "config. identifier",
76	# host_configuration renamed configuration_identifier,
77	# jobname renamed run_identifier
78	# header output of PALM code revision,
79	# options -m, -s, and -S removed
80	#
81	# 3210 2018-08-28 07:31:13Z sward
82	# Bugfix: agent_preprocessing stays in MAKE_DEPOSITORY after compilation
83	#
84	# 3208 2018-08-27 13:10:50Z sward
85	# Added building of agent_preprocessing
86	#
87	# 3033 2018-05-23 15:26:19Z raasch
88	# "fname" renamed to "jobname"
89	#
90	# 2718 2018-01-02 08:49:38Z maronga
91	# Corrected "Former revisions" section
92	#
93	# 2696 2017-12-14 17:12:51Z kanani
94	# Change in file header (GPL part)
95	#
96	# 2566 2017-10-20 08:50:47Z raasch
97	# informative messages switched of almost completely in silent mode
98	# two header blocks merged into one
99	#
100	# 2506 2017-09-29 08:30:37Z raasch
101	# option -V added to check for an existing SOURCES_FOR_RUN_... folder
102	# host configuration added to SOURCES_FOR_RUN_... folder name
103	# SOURCES_FOR_RUN_... folder is deleted in case of compilation errors
104	# host_identifier renamed host_configuration
105	#
106	# 2500 2017-09-25 11:10:03Z raasch
107	# bugfix for r2492
108	#
109	# 2492 2017-09-21 14:18:48Z raasch
110	# ask for compilation, if SOURCES_FOR_RUN_... exists
111	#
112	# 2487 2017-09-21 11:30:10Z raasch
113	# bugfix: abort in case of compiling/linking errors in silent mode
114	#
115	# 2422 2017-09-08 08:25:41Z raasch
116	# initial revision
117	#
118	#------------------------------------------------------------------------------#
119	# palmbuild - script for compiling the PALM code and its utility programs
120	#
121	# Procedure to compile code on local and remote hosts using the
122	# make-mechanism. The source code must be provided on the local host.
123	#
124	# @note This script does not work on MAC OS
125	#------------------------------------------------------------------------------#
126
127
128	# VARIABLE DECLARATIONS + DEFAULT VALUES
129	calltime=""
130	column1=""
131	column2=""
132	configuration_identifier=default
133	global_revision=""
134	locat=normal
135	makefile=""
136	make_options=""
137	module_commands=""
138	program_name=palm
139	remote_ip=""
140	silent=false
141	ssh_key=""
142	suf=f90
143	use_existing_sources_folder=false
144	version="palmbuild 1.0 Rev$Rev: 4843 $"
145	working_directory=`pwd`
146
147
148	# ERROR HANDLING IN CASE OF EXIT
149	trap 'rm -rf ${source_path}/${configuration_identifier}_last_make_protocol
150	if [[ $locat != normal && $locat != control_c ]]
151	then
152	printf "\n\n+++ palmbuild crashed \n\n"
153	exit 1
154	elif [[ $locat != normal ]]
155	then
156	printf "\n+++ palmbuild killed by \"^C\" \n\n"
157	exit 2
158	else
159	if [[ $silent = false ]]
160	then
161	printf "\n --> palmbuild finished\n\n"
162	fi
163	exit 0
164	fi' exit
165
166
167	# ACTIONS IN CASE OF TERMINAL-BREAK (CONTROL-C):
168	trap 'locat=control_c
169	exit 1
170	' 2
171
172
173
174	# READ SHELLSCRIPT-OPTIONS
175	while getopts :c:r:uvV option
176	do
177	case $option in
178	(c) configuration_identifier=$OPTARG;;
179	(r) run_identifier=$OPTARG;;
180	(v) silent=true;;
181	(V) use_existing_sources_folder=true;;
182	(\?) printf "\n +++ unknown option $OPTARG \n";
183	locat=parameter; exit;;
184	esac
185	done
186
187
188	# BUILD THE CONFIGURATION-FILE NAME AND THE SOURCES_FOR_RUN-FOLDER NAME
189	config_file=.palm.config.$configuration_identifier
190	sources_for_run_catalog=SOURCES_FOR_RUN_${configuration_identifier}_$run_identifier
191
192
193	# CHECK, IF CONFIGURATION-FILE EXISTS
194	if [[ ! -f $config_file ]]
195	then
196	printf "\n +++ configuration file: "
197	printf "\n $config_file"
198	printf "\n does not exist"
199	locat=configuration; exit
200	fi
201
202
203	# ### is this really required?
204	config_file=$PWD/$config_file
205
206
207	# READ VARIABLE SETTINGS FROM CONFIG FILE LINE BY LINE
208	while read line
209	do
210
211	# FIRST REPLACE ENVIRONMENT-VARIABLES BY THEIR RESPECTIVE VALUES
212	eval line=\"$line\"
213
214
215	# INTERPRET THE LINE
216	if [[ "$(echo $line)" = "" ]]
217	then
218
219	# EMPTY LINE, NO ACTION
220	continue
221
222	elif [[ "$(echo $line \| cut -c1)" = "#" ]]
223	then
224
225	# LINE IS A COMMENT LINE
226	continue
227
228	elif [[ "$(echo $line \| cut -c1)" = "%" ]]
229	then
230
231	# LINE DEFINES AN ENVIRONMENT-VARIABLE
232	var=`echo $line \| cut -d" " -s -f1 \| cut -c2-`
233	value=`echo $line \| cut -d" " -s -f2-`
234
235	# REPLACE ":" BY " " IN COMPILER- CPP- OR LINKER-OPTIONS,
236	# "::" IS REPLACED BY ":".
237	#value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
238
239
240	# VALUE FROM THE CONFIGURATION-FILE IS ASSIGNED TO THE
241	# ENVIRONMENT-VARIABLE, BUT ONLY IF NO VALUE HAS BEEN ALREADY
242	# ASSIGNED WITHIN THIS SCRIPT (E.G. BY SCRIPT-OPTIONS).
243	# NON-ASSIGNED VARIABLES HAVE VALUE "" OR 0 (IN CASE OF INTEGER).
244	# HENCE THE GENERAL RULE IS: SCRIPT-OPTION OVERWRITES THE
245	# CONFIGURATION-FILE.
246	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
247	then
248	eval export $var="\$value"
249
250	# TERMINAL OUTPUT OF ENVIRONMENT-VARIABLES, IF TRACEBACK IS SWITCHED on
251	if [[ $do_trace = true ]]
252	then
253	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
254	fi
255	fi
256
257	else
258
259	# SKIP ALL OTHER LINES
260	continue
261
262	fi
263
264	done < $config_file
265
266
267	# CHECK, IF THE BASE DIRECTORY PATH HAS BEEN GIVEN
268	if [[ "$base_directory" = "" ]]
269	then
270	printf "\n +++ no base directory found in configuration file"
271	locat=config_file; exit
272	else
273	if [[ ! -d $base_directory ]]
274	then
275	printf "\n\n +++ base directory \"$base_directory\" "
276	printf "\n does not exist"
277	locat=source_path; exit
278	fi
279	fi
280
281
282	# CHECK SOURCE-CODE PATH
283	if [[ "$source_path" = "" ]]
284	then
285	printf "\n +++ no source path found in configuration file"
286	locat=config_file; exit
287	else
288	if [[ ! -d $source_path ]]
289	then
290	printf "\n\n +++ source path \"$source_path\" "
291	printf "\n does not exist"
292	locat=source_path; exit
293	fi
294	fi
295
296
297	# CHECK MAKEFILE
298	makefile=$source_path/Makefile
299	if [[ ! -f $makefile ]]
300	then
301	printf "\n +++ makefile: "
302	printf "\n $makefile"
303	printf "\n does not exist"
304	locat=makefile; exit
305	fi
306
307
308	# CHECK COMPILERNAME
309	if [[ "$compiler_name" = "" ]]
310	then
311	printf "\n +++ no compiler name found in configuration file"
312	locat=config_file; exit
313	fi
314
315
316	# CHECK SERIAL COMPILERNAME
317	if [[ "$compiler_name_ser" = "" ]]
318	then
319	printf "\n +++ no compiler name for serial compilation in configuration file"
320	locat=config_file; exit
321	fi
322
323
324	# DETERMINE THE SSH-OPTION IN CASE THAT AN SSH-KEY IS EXPLICITLY GIVEN IN THE
325	# CONFIG-FILE
326	if [[ "$ssh_key" != "" ]]
327	then
328	ssh_key="-i $HOME/.ssh/$ssh_key"
329	fi
330
331
332	#CHECK CPP-OPTIONS
333	if [[ "$cpp_options" = "" ]]
334	then
335	printf "\n +++ WARNING: no cpp-options found in configuration file"
336	fi
337
338
339	# CHECK SETTINGS IN CASE OF COMPILING ON REMOTE MACHINE
340	if [[ "$remote_ip" != "" ]]
341	then
342
343	if [[ "$remote_username" = "" ]]
344	then
345	printf "\n +++ no user name given in configuration file"
346	locat=config_file; exit
347	fi
348
349	# GET SOURCE AND DEPOSITORY PATH ON THE REMOTE MACHINE WITHOUT EVALUATING
350	# THE $
351	# IF NOT GIVEN, USE THE LOCAL SOURCE AND DEPOSITORY PATH
352	line=`grep %remote_source_path $config_file`
353	if [[ "$line" != "" ]]
354	then
355	remote_source_path=`echo $line \| cut -d" " -s -f2`
356	else
357	line=`grep %source_path $config_file`
358	remote_source_path=`echo $line \| cut -d" " -s -f2`
359	fi
360
361	line=`grep %base_directory $config_file`
362	make_depository=`echo $line \| cut -d" " -s -f2`/MAKE_DEPOSITORY_${configuration_identifier}
363
364	else
365
366	make_depository=${base_directory}/MAKE_DEPOSITORY_${configuration_identifier}
367
368	fi
369
370
371	# GET THE GLOBAL REVISION-NUMBER OF THE SVN-REPOSITORY
372	global_revision=`svnversion $source_path 2>/dev/null`
373	global_revision="Rev: $global_revision"
374
375
376	# HEADER-OUTPUT (PART1: MESSAGES CONCERNING THE LOCAL HOST)
377	if [[ $silent = false ]]
378	then
379	calltime=$(date)
380	printf "\n"
381	printf "#------------------------------------------------------------------------# \n"
382	printf "\| %-40s%30s \| \n" "$version" "$calltime"
383	printf "\| %-40s%30s \| \n" "PALM code $global_revision" " "
384	printf "\| \| \n"
385	printf "\| %-13s%-57s \| \n" "called on:" "$(hostname) (IP:$local_ip)"
386	column2=$(echo $config_file \| cut -c1-57 )
387	printf "\| %-13s%-57s \| \n" "config file:" "$column2"
388	line=$(echo "$config_file" \| cut -c58-)
389	while [[ "$line" != "" ]]
390	do
391	column1=""
392	column2=$(echo $line \| cut -c1-57 )
393	printf "\| %-13s%-57s \| \n" "$column1" "$column2"
394	line=$(echo "$line" \| cut -c58-)
395	done
396	column2=$(echo $makefile \| cut -c1-57 )
397	printf "\| %-13s%-57s \| \n" "makefile:" "$column2"
398	line=$(echo "$makefile" \| cut -c58-)
399	while [[ "$line" != "" ]]
400	do
401	column1=""
402	column2=$(echo $line \| cut -c1-57 )
403	printf "\| %-13s%-57s \| \n" "$column1" "$column2"
404	line=$(echo "$line" \| cut -c58-)
405	done
406	column2=$(echo $source_path \| cut -c1-57 )
407	printf "\| %-13s%-57s \| \n" "source path:" "$column2"
408	line=$(echo "$source_path" \| cut -c58-)
409	while [[ "$line" != "" ]]
410	do
411	column1=""
412	column2=$(echo $line \| cut -c1-57 )
413	printf "\| %-13s%-57s \| \n" "$column1" "$column2"
414	line=$(echo "$line" \| cut -c58-)
415	done
416	printf "\| \| \n"
417
418	if [[ "$remote_ip" != "" ]]
419	then
420	column2="$configuration_identifier"
421	printf "\| %-20s%-50s \| \n" "config. identifier:" "$column2"
422	column2=$(echo "$make_depository" \| cut -c1-50 )
423	printf "\| %-20s%-50s \| \n" "remote depository:" "$column2"
424	else
425	column2="$configuration_identifier"
426	printf "\| %-20s%-50s \| \n" "config. identifier:" "$column2"
427	column2=$(echo "$make_depository" \| cut -c1-50 )
428	printf "\| %-20s%-50s \| \n" "local depository:" "$column2"
429	fi
430	line=$(echo "$make_depository" \| cut -c51-)
431	while [[ "$line" != "" ]]
432	do
433	column1=""
434	column2=$(echo "$line" \| cut -c1-50 )
435	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
436	line=$(echo "$line" \| cut -c51-)
437	done
438
439	if [[ "$remote_ip" != "" ]]
440	then
441	printf "\| %-20s%-50s \| \n" "remote username:" "$remote_username"
442	printf "\| %-20s%-50s \| \n" "remote address:" "$remote_ip"
443	else
444	printf "\| %-20s%-50s \| \n" "username:" "$local_username"
445	printf "\| %-20s%-50s \| \n" "address:" "$local_ip"
446	fi
447
448	printf "\| %-20s%-50s \| \n" "compiler:" "$compiler_name"
449	printf "\| %-20s%-50s \| \n" "serial compiler:" "$compiler_name_ser"
450
451	if [[ "$make_options" != "" ]]
452	then
453	printf "\| %-20s%-50s \| \n" "make options:" "$make_options"
454	fi
455	column2=$(echo "$cpp_options" \| cut -c1-50 )
456	printf "\| %-20s%-50s \| \n" "cpp options:" "$column2"
457	line=$(echo "$cpp_options" \| cut -c51-)
458	while [[ "$line" != "" ]]
459	do
460	column1=""
461	column2=$(echo "$line" \| cut -c1-50 )
462	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
463	line=$(echo "$line" \| cut -c51-)
464	done
465	column2=$(echo "$compiler_options" \| cut -c1-50 )
466	printf "\| %-20s%-50s \| \n" "compiler options:" "$column2"
467	line=$(echo "$compiler_options" \| cut -c51-)
468	while [[ "$line" != "" ]]
469	do
470	column1=""
471	column2=$(echo "$line" \| cut -c1-50 )
472	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
473	line=$(echo "$line" \| cut -c51-)
474	done
475	column2=$(echo "$linker_options" \| cut -c1-50 )
476	printf "\| %-20s%-50s \| \n" "linker options:" "$column2"
477	line=$(echo "$linker_options" \| cut -c51-)
478	while [[ "$line" != "" ]]
479	do
480	column1=""
481	column2=$(echo "$line" \| cut -c1-50 )
482	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
483	line=$(echo "$line" \| cut -c51-)
484	done
485	if [[ "$login_init_cmd" != "" ]]
486	then
487	column2=$(echo "$login_init_cmd" \| cut -c1-50 )
488	printf "\| %-20s%-50s \| \n" "login init command:" "$column2"
489	line=$(echo "$login_init_cmd" \| cut -c51-)
490	while [[ "$line" != "" ]]
491	do
492	column1=""
493	column2=$(echo "$line" \| cut -c1-50 )
494	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
495	line=$(echo "$line" \| cut -c51-)
496	done
497	fi
498	if [[ "$module_commands" != "" ]]
499	then
500	column2=$(echo "$module_commands" \| cut -c1-50 )
501	printf "\| %-20s%-50s \| \n" "module command(s):" "$column2"
502	line=$(echo "$module_commands" \| cut -c51-)
503	while [[ "$line" != "" ]]
504	do
505	column1=""
506	column2=$(echo "$line" \| cut -c1-50 )
507	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
508	line=$(echo "$line" \| cut -c51-)
509	done
510	fi
511	printf "#------------------------------------------------------------------------# \n"
512
513	answer=dummy
514	printf "\n"
515	while [[ "$answer" != y && "$answer" != Y && "$answer" != s && "$answer" != S && "$answer" != a && "$answer" != A ]]
516	do
517	printf " >>> continue (y(es)/a(bort)) ? "
518	read answer
519	done
520	if [[ $answer = a \|\| $answer = A ]]
521	then
522	locat=user_abort; exit
523	fi
524	fi
525
526
527	# TAR THE SOURCES AND MAKEFILES
528	# UTILITIES ARE TEMPORARILY COPIED TO THE SOURCE DIRECTORY IN ORDER TO TAR
529	# THEM TOO
530	if [[ $silent = false ]]
531	then
532	printf "\n\n *** tar of makefile and source files in"
533	printf "\n $source_path\n"
534	fi
535	cd $source_path
536	cp -p ../UTIL/combine_plot_fields.f90 .
537	cp -p ../UTIL/compare_palm_logs.f90 .
538	cp -p ../UTIL/agent_preprocessing/agent_preprocessing.f90 .
539	#cp -p ../UTIL/surface_output_processing/surface_output_to_vtk.f90 .
540	cp -p ../UTIL/inifor/src/inifor*f90 .
541	cp -p ../UTIL/Makefile_utilities .
542	tar -cf ${program_name}_sources.tar Makefile* *.$suf
543	rm combine_plot_fields.f90 compare_palm_logs.f90 agent_preprocessing.f90 Makefile_utilities inifor*f90 #surface_output_to_vtk.f90
544
545
546	# MAKE ON REMOTE HOST
547	if [[ "$remote_ip" != "" ]]
548	then
549
550	# NEXT IS THE BRANCH FOR CREATING THE MAKE_DEPOSITORY_...
551	if [[ "$run_identifier" = "" ]]
552	then
553
554	# COPY CURRENT SOURCE CODE TO SOURCE-CODE DIRECTORY ON THE REMOTE HOST
555	# CREATE THIS DIRECTORY, IF IT DOES NOT EXIST
556	if [[ $silent = false ]]
557	then
558	echo " "
559	echo " *** copying \"${program_name}_sources.tar\" to \"${remote_ip}:${make_depository}/\" "
560	ssh -q $ssh_key ${remote_username}@${remote_ip} "[[ ! -d ${make_depository} ]] && (echo \" *** ${make_depository} will be created\"; mkdir -p ${make_depository})" 2>&1
561	scp $ssh_key ${source_path}/${program_name}_sources.tar ${remote_username}@${remote_ip}:${make_depository}/${program_name}_sources.tar
562	else
563	ssh -q $ssh_key ${remote_username}@${remote_ip} "[[ ! -d ${make_depository} ]] && mkdir -p ${make_depository}" 2>&1
564	scp $ssh_key ${source_path}/${program_name}_sources.tar ${remote_username}@${remote_ip}:${make_depository}/${program_name}_sources.tar > /dev/null
565	fi
566
567
568
569
570	# UNTAR PREVIOUS UPDATE ON REMOTE HOST, IF EXISTING
571	if [[ $silent = false ]]
572	then
573	echo " *** untar previous update on remote host, if existing"
574	fi
575	ssh -q $ssh_key ${remote_username}@${remote_ip} "cd ${make_depository}; [[ -f ${program_name}_current_version.tar ]] && tar -xf ${program_name}_current_version.tar" 2>&1
576
577
578	# UNTAR CURRENT SOURCES ON REMOTE HOST
579	if [[ $silent = false ]]
580	then
581	echo " *** untar current sources on remote host"
582	fi
583	ssh -q $ssh_key ${remote_username}@${remote_ip} "cd ${make_depository}; tar -xf ${program_name}_sources.tar" 2>&1
584
585
586	# CREATE INIT AND MODULE COAMMNDS
587	[[ "$login_init_cmd" != "" ]] && login_init_cmd=${login_init_cmd}";"
588	[[ "$module_commands" != "" ]] && module_commands=${module_commands}";"
589
590
591	# FIRST CREATE EXECUTABLES FOR THE UTILITY ROUTINES
592	if [[ $silent = false ]]
593	then
594	echo " "
595	echo " *** creating utilities on remote host"
596	fi
597	make_call_string="make -f Makefile_utilities $make_options F90=$compiler_name F90_SER=$compiler_name_ser COPT=\"$cpp_options\" F90FLAGS=\"$compiler_options\" LDFLAGS=\"$linker_options\" "
598	### echo "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>/dev/null \| tee ${configuration_identifier}_last_make_protocol
599	ssh -q $ssh_key ${remote_username}@${remote_ip} "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
600
601	if [[ $(grep -c MAKE_ERROR ${configuration_identifier}_last_make_protocol) != 0 ]]
602	then
603	printf "\a\n +++ error(s) occurred during compiling or linking of utilities"
604	printf "\n for host configuration \"$configuration_identifier\" "
605	if [[ $silent = false ]]
606	then
607	answer=dummy
608	printf "\n"
609	while [[ "$answer" != c && "$answer" != k ]]
610	do
611	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
612	read answer
613	if [[ "$answer" = l ]]
614	then
615	more ${configuration_identifier}_last_make_protocol
616	fi
617	done
618	if [[ $answer = k ]]
619	then
620	locat=user_abort; exit
621	fi
622	else
623	# ABORT ANYWAY
624	locat=user_abort; exit
625	fi
626	fi
627
628	# NOW COMPILE THE PALM CODE
629	# COMMANDS WILL BE COMMUNICATED TO SSH VIA PIPE, SINCE THIS WAY THE SYSTEM- AND
630	# USER-PROFILES OF THE SHELL ARE COMPLETELY EXECUTED (OTHERWISE, MAKE
631	# MAY E.G. MISS THE COMPILER-PATHS)
632	if [[ $silent = false ]]
633	then
634	echo " "
635	echo " *** compile PALM sources on remote host"
636	fi
637	make_call_string="make $make_options PROG=$program_name F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$compiler_options\" LDFLAGS=\"$linker_options\" "
638	### echo "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1 \| tee ${configuration_identifier}_last_make_protocol
639	ssh -q $ssh_key ${remote_username}@${remote_ip} "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
640
641	if [[ $(grep -c MAKE_ERROR ${configuration_identifier}_last_make_protocol) != 0 ]]
642	then
643	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
644	if [[ $silent = false ]]
645	then
646	answer=dummy
647	printf "\n"
648	while [[ "$answer" != c && "$answer" != k ]]
649	do
650	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
651	read answer
652	if [[ "$answer" = l ]]
653	then
654	more ${configuration_identifier}_last_make_protocol
655	fi
656	done
657	if [[ $answer = k ]]
658	then
659	locat=user_abort; exit
660	fi
661	else
662	# ABORT ANYWAY
663	locat=user_abort; exit
664	fi
665	fi
666
667	# TAR UPDATED VERSION ON THE REMOTE HOST
668	if [[ $silent = false ]]
669	then
670	printf "\n *** tar update on remote host ..."
671	fi
672	ssh -q $ssh_key ${remote_username}@${remote_ip} "cd ${make_depository}; chmod u+w ; tar -cf ${program_name}_current_version.tar ${program_name} .f90 .o .mod *.x" 2>&1
673
674
675	# NOW COMES THE BRANCH FOR CREATING THE EXECUTABLE FOR THE CURRENT RUN
676	# INCLUDING E.G. USER-INTERFACE ROUTINES. ALSO ADD OTHER UTILITY EXECUTABLES. EVERYTHING IS
677	# COLLECTED IN DIRECTORY SOURCES_FOR_RUN_...
678	elif [[ "$run_identifier" != "" ]]
679	then
680
681	# FIRST CHECK, IF COMPILED SOURCES FOR THIS RUN IDENTIFIER EXISTS
682	# AND ASK, IF THEY SHALL BE USED
683	ssh -q $ssh_key ${remote_username}@${remote_ip} "[[ -d ${fast_io_catalog}/${sources_for_run_catalog} ]] && echo sources for run found" 2>&1 > ${configuration_identifier}_last_make_protocol
684	if [[ $(grep -c "sources for run found" ${configuration_identifier}_last_make_protocol) != 0 && $use_existing_sources_folder = true ]]
685	then
686	printf "\a\n *** compiled sources for run \"$run_identifier\" found on remote host in folder"
687	printf "\n ${fast_io_catalog}/${sources_for_run_catalog}"
688	printf "\n will be used!"
689	exit
690	fi
691
692	# COPY MAKE DEPOSITORY ON REMOTE MACHINE TO SOURCES_FOR_RUN_...
693	if [[ $silent = false ]]
694	then
695	printf "\n *** copy MAKE_DEPOSITORY_${configuration_identifier} on remote host to $sources_for_run_catalog \n"
696	fi
697	ssh -q $ssh_key ${remote_username}@${remote_ip} "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}; mkdir -p ${fast_io_catalog}/${sources_for_run_catalog}; [[ \$? != 0 ]] && exit 1; cp ${make_depository}/${program_name}_current_version.tar ${fast_io_catalog}/${sources_for_run_catalog}; cd ${fast_io_catalog}/${sources_for_run_catalog}; tar xf ${program_name}_current_version.tar" 2>&1
698	if [[ $? != 0 ]]
699	then
700	printf "\n +++ SOURCES_FOR_RUN catalog cannot be created."
701	printf "\n Check setting of variable fast_io_catalog in your config file."
702	locat=temporary_working_directory
703	exit
704	fi
705
706
707	# COPY CONTENTS OF SOURCES_FOR_RUN_... TO SOURCES_FOR_RUN_... ON THE REMOTE MACHINE
708	if [[ $silent = false ]]
709	then
710	printf "\n *** copy ${base_directory}/${sources_for_run_catalog}"
711	printf "\n to $sources_for_run_catalog on remote host \n"
712	fi
713	scp -q $ssh_key ${base_directory}/${sources_for_run_catalog}/{,.[!.]} ${remote_username}@${remote_ip}:${fast_io_catalog}/${sources_for_run_catalog}
714
715
716	# CREATE EXECUTABLE FROM THE NEW/MODIFIED SOURCE FILES, IF THERE ARE ANY
717	if [[ $(ls -1 ${base_directory}/${sources_for_run_catalog}/ \| grep -c .$suf) != 0 ]]
718	then
719
720	make_call_string="make $make_options PROG=$program_name F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$compiler_options\" LDFLAGS=\"$linker_options\" "
721	[[ "$login_init_cmd" != "" ]] && login_init_cmd=${login_init_cmd}";"
722	[[ "$module_commands" != "" ]] && module_commands=${module_commands}";"
723	if [[ $silent = false ]]
724	then
725	echo " *** execute \"make\" on remote host"
726	fi
727	ssh -q $ssh_key ${remote_username}@${remote_ip} "$login_init_cmd $module_commands cd ${fast_io_catalog}/${sources_for_run_catalog}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
728
729	if [[ $(grep -c MAKE_ERROR ${configuration_identifier}_last_make_protocol) != 0 ]]
730	then
731	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
732	if [[ $silent = false ]]
733	then
734	answer=dummy
735	printf "\n"
736	while [[ "$answer" != c && "$answer" != k ]]
737	do
738	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
739	read answer
740	if [[ "$answer" = l ]]
741	then
742	more ${configuration_identifier}_last_make_protocol
743	fi
744	done
745	if [[ $answer = k ]]
746	then
747	ssh -q $ssh_key ${remote_username}@${remote_ip} "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}" 2>&1
748	locat=user_abort; exit
749	fi
750	else
751	# ABORT ANYWAY
752	ssh -q $ssh_key ${remote_username}@${remote_ip} "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}" 2>&1
753	locat=user_abort; exit
754	fi
755	fi
756
757	else
758
759	echo " *** nothing to compile for this run"
760
761	fi
762
763	fi
764
765	rm -rf ${source_path}/${configuration_identifier}_last_make_protocol
766
767
768	# MAKE ON LOCAL HOST
769	else
770
771
772	# NEXT IS THE BRANCH FOR CREATING THE MAKE_DEPOSITORY_... ON THE
773	# LOCAL HOST
774	if [[ "$run_identifier" = "" ]]
775	then
776
777	# SET THE ENVIRONMENT (EXECUTE INIT AND MODULE COMMANDS)
778	if [[ "$login_init_cmd" != "" ]]
779	then
780	eval $login_init_cmd
781	fi
782
783	if [[ "$module_commands" != "" ]]
784	then
785	eval $module_commands \|\| {
786	printf "\n +++ Module command(s) failed."
787	printf "\n Check the above output of the command(s)."
788	locat=module_command_error; exit
789	}
790	fi
791
792	# next is required to evaluate environment variables or commands used in the linker option
793	eval linker_options=\"$linker_options\"
794
795	# CREATE MAKE-DEPOSITORY, IF IT DOES NOT EXIST
796	eval make_depository=$make_depository
797	if [[ ! -d $make_depository ]]
798	then
799	if mkdir -p $make_depository
800	then
801	if [[ $silent = false ]]
802	then
803	printf "\n\n *** directory for local make depository:"
804	printf "\n $make_depository"
805	printf "\n was created\n"
806	fi
807	else
808	printf "\n +++ directory for local make depository:"
809	printf "\n $make_depository"
810	printf "\n cannot be created"
811	locat=local_depository; exit
812	fi
813	fi
814
815	# COPY SOURCE-CODE FROM REPOSITORY TO MAKE-DEPOSITORY
816	if [[ $silent = false ]]
817	then
818	echo " "
819	echo " *** untar current source sources on local host in"
820	echo " $make_depository"
821	fi
822	cd $make_depository
823	cp $source_path/${program_name}_sources.tar .
824	tar xf ${program_name}_sources.tar
825
826
827	# FIRST CREATE EXECUTABLES FOR THE UTILITY ROUTINES
828	if [[ $silent = false ]]
829	then
830	echo " "
831	echo " *** creating utilities on local host"
832	fi
833	make -f Makefile_utilities $make_options F90=$compiler_name F90_SER=$compiler_name_ser COPT="$cpp_options" F90FLAGS="$compiler_options" LDFLAGS="$linker_options" \| tee ${configuration_identifier}_last_make_protocol
834
835	if [[ ${PIPESTATUS[0]} != 0 ]]
836	then
837	printf "\a\n +++ error(s) occurred during compiling of the utilities for host configuration \"$configuration_identifier\" "
838	if [[ $silent = false ]]
839	then
840	answer=dummy
841	printf "\n"
842	while [[ "$answer" != c && "$answer" != k ]]
843	do
844	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
845	read answer
846	if [[ "$answer" = l ]]
847	then
848	more ${configuration_identifier}_last_make_protocol
849	fi
850	done
851	if [[ $answer = k ]]
852	then
853	locat=user_abort; exit
854	fi
855	else
856	# ABORT ANYWAY
857	locat=user_abort; exit
858	fi
859	else
860	cp agent_preprocessing $source_path/../SCRIPTS/.
861	cp inifor $source_path/../SCRIPTS/.
862	fi
863
864
865	# CALL MAKE ON LOCAL HOST USING THE OPTIONS DETERMINED FURTHER ABOVE
866	if [[ $silent = false ]]
867	then
868	echo " "
869	echo " *** compile PALM sources on local host"
870	fi
871
872	make $make_options PROG=$program_name F90=$compiler_name COPT="$cpp_options" F90FLAGS="$compiler_options" LDFLAGS="$linker_options" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
873
874	if [[ ${PIPESTATUS[0]} != 0 ]]
875	then
876	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
877	if [[ $silent = false ]]
878	then
879	answer=dummy
880	printf "\n"
881	while [[ "$answer" != c && "$answer" != k ]]
882	do
883	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
884	read answer
885	if [[ "$answer" = l ]]
886	then
887	more ${configuration_identifier}_last_make_protocol
888	fi
889	done
890	if [[ $answer = k ]]
891	then
892	locat=user_abort; exit
893	fi
894	else
895	# ABORT ANYWAY
896	locat=user_abort; exit
897	fi
898	fi
899
900
901	# TAR NEW VERSION ON LOCAL HOST
902	if [[ $silent = false ]]
903	then
904	printf "\n *** tar update on local host ..."
905	fi
906	tar -cf ${program_name}_current_version.tar ${program_name} .$suf .o .mod .x
907
908	else
909
910	# NOW COMES THE BRANCH FOR CREATING THE EXECUTABLE FOR THE CURRENT RUN
911	# INCLUDING E.G. USER-INTERFACE ROUTINES. ALSO ADD OTHER UTILITY EXECUTABLES. EVERYTHING IS
912	# COLLECTED IN DIRECTORY SOURCES_FOR_RUN_...
913
914	# FIRST CHECK, IF COMPILED SOURCES FOR THIS RUN IDENTIFIER EXISTS
915	# AND ASK, IF THEY SHALL BE USED
916	if [[ -d ${fast_io_catalog}/${sources_for_run_catalog} && $use_existing_sources_folder = true ]]
917	then
918	printf "\a\n *** compiled sources for run \"$run_identifier\" found on local host in folder"
919	printf "\n ${fast_io_catalog}/${sources_for_run_catalog}"
920	printf "\n will be used!"
921	exit
922	fi
923
924	# SECOND CHECK, IF A DEPOSITORY EXISTS ON THE LOCAL MACHINE
925	if [[ ! -d ${make_depository} ]]
926	then
927	printf "\n +++ directory for local make depository:"
928	printf "\n $make_depository"
929	printf "\n not found. Please run \"palmbuild -c $configuration_identifier\" "
930	locat=make_depository; exit
931	fi
932
933
934	# COPY MAKE DEPOSITORY ON LOCAL MACHINE TO SOURCES_FOR_RUN_...
935	if [[ $silent = false ]]
936	then
937	printf "\n *** copy MAKE_DEPOSITORY_${configuration_identifier} on local host to "
938	printf "\n ${fast_io_catalog}/${sources_for_run_catalog} \n"
939	fi
940	rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
941	mkdir -p ${fast_io_catalog}/${sources_for_run_catalog}
942	if [[ $? != 0 ]]
943	then
944	printf "\n +++ SOURCES_FOR_RUN catalog cannot be created."
945	printf "\n Check setting of variable fast_io_catalog in your config file."
946	locat=execution
947	exit
948	fi
949	cp ${make_depository}/${program_name}_current_version.tar ${fast_io_catalog}/${sources_for_run_catalog}
950	cd $fast_io_catalog/${sources_for_run_catalog}
951	tar xf ${program_name}_current_version.tar
952
953
954	# COPY CONTENTS OF SOURCES_FOR_RUN_... TO SOURCES_FOR_RUN_...
955	# IN THE FAST_IO_CATALOG ON THE LOCAL MACHINE
956	if [[ $silent = false ]]
957	then
958	printf "\n *** copy ${base_directory}/${sources_for_run_catalog} to"
959	printf "\n ${fast_io_catalog}/${sources_for_run_catalog} on local host \n"
960	fi
961	cp ${base_directory}/${sources_for_run_catalog}/{,.[!.]} ${fast_io_catalog}/${sources_for_run_catalog}
962
963
964	# CREATE EXECUTABLE FROM THE NEW/MODIFIED SOURCE FILES, IF THERE ARE ANY
965	if [[ $(ls -1 ${base_directory}/${sources_for_run_catalog}/ \| grep -c .$suf) != 0 ]]
966	then
967
968	if [[ $silent = false ]]
969	then
970	echo " *** execute \"make\" on local host"
971	fi
972	[[ "$login_init_cmd" != "" ]] && eval $login_init_cmd
973	[[ "$module_commands" != "" ]] && {
974	eval $module_commands \|\| {
975	printf "\n +++ Module command(s) failed."
976	printf "\n Check the above output of the command(s)."
977	locat=module_command_error; exit
978	}
979	}
980
981	# next is required to evaluate environment variables or commands used in the linker option
982	eval linker_options=\"$linker_options\"
983
984	make $make_options PROG=$program_name F90=$compiler_name COPT="$cpp_options" F90FLAGS="$compiler_options" LDFLAGS="$linker_options"
985
986	if [[ ${PIPESTATUS[0]} != 0 ]]
987	then
988
989	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
990	if [[ $silent = false ]]
991	then
992	answer=dummy
993	printf "\n"
994	while [[ "$answer" != c && "$answer" != k ]]
995	do
996	printf " >>> continue / kill palmbuild (c/k) ? "
997	read answer
998	done
999	if [[ $answer = k ]]
1000	then
1001	rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
1002	locat=user_abort; exit
1003	fi
1004	else
1005	# ABORT ANYWAY
1006	rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
1007	locat=user_abort; exit
1008	fi
1009	fi
1010
1011	else
1012
1013	echo " *** nothing to compile for this run"
1014
1015	fi
1016
1017	fi
1018	fi

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