= !ToDo-List =
\\

\\
== PALM workshop ==

||='''Category'''  =||='''What to do?'''  =||='''Name'''  =||
||Discussion   ||Parameter file inconsistencies. Settings for data output are not consistent within the parameter file. For example, 3d/2d/pr output variables are explicitly declared, but timeseries are always the same (confusing for users). Also, differentiation between data_output and data_output_pr is confusing. A possible solution would be to use data_output exclusively and include profiles, e.g. for pt this then would read "pt", "pt_xy", "pt_pr", etc. \\ [[span(style=color: #FF0000, I would leave this as it is. Several quantities only exist as profiles, so it don't make sense to add a _pr to all of them. It should be enough to add (better) hints in the docu. Siggi)]] ||group ||
||Discussion   ||Discuss the treatment of package parameters, regarding their appearance in {{{rrd_global}}} and {{{wrd_global}}}. Discuss the general treatment / separation of {{{inipar}}} and {{{d3par}}} parameters. ||Sebastian  ||
||  ||  ||  ||
||PALM code    ||Subtract 3d-average from pressure before output in case that Neumann boundary conditions are used at all 6 boundaries (which is always the case in the child domain). Otherwise, large differences in pressure levels may appear between parent and child. ||tba  ||
||PALM code    ||Add check for non valid NAMELIST names in the NAMELIST file. Reason (e.g.): in case of typos in the nesting NAMELIST a non-nested run will be started.  Run should better be terminated. ||tba ||
||PALM code    ||Clean up / extend location messages / time measurements, remove output of '--- finished' in ''advance'' mode ||Farah, Matthias, Siggi ||
||PALM code    ||Comment variables/parameters in declaration sections (see list at the bottom of this page) ||ALL  ||
||PALM code    ||Extend plant canopy model to handle basal area (trunks, branches) ||Björn ||
|| PALM code || Implement and homogenize output of cloud-physical variables derived from bulk and Lagrangian cloud physics (e.g., qc, ql, qr, lpt, pt) || Johannes  ||
||PALM code || replace {{{CEILING}}} function with {{{INT}}} or {{{NINT}}} where appropriate ||tba  ||
||PALM code || 3D output in serial mode seems to be quite different from parallel runs although RUN_CONTROL files are identical ||tba  ||
||PALM code || Use of u_init (v_init) and ug (vg) not consistent in prognostic equations ||tba ||
||  ||  ||  ||
||Scripts      ||Finalize first version of new palmplot script (python) ||Helge ||
||Scripts      ||palmrun does not yet interpret variables in IC commands ||Siggi ||
||  ||  ||  ||
||Test suite  ||Use new namelist names in parameter files ||tba ||
||  ||  ||  ||
||Web docu     ||Restructure entire PALM docu ||Farah ||
||Web docu     ||Update palmrun description ||Siggi ||
||Web docu     ||Update links to palmrun description, remove/rename traces to mbuild, mrun, subjob ||tba ||
||Web docu     ||Check consistency of parameter lists (namelist pages and alphabetical list) ||Katrin ||
||Web docu     ||Revise description of timeseries output ||Farah ||
||Web docu     ||documentation of the PIDS and of surface model (e.g. how to create drivers, or the different level-of-details) ||Matthias  ||
||Web docu     ||automatic generation of a machine-readable list of all NAMELIST-parameters including their default values ||tba  ||
||  ||  ||  ||



== Documentation ==

||='''Page (e. g. wiki/doc/app/userint)'''  =||='''What to do?'''  =||='''Name'''  =||
||wiki/doc/tec/1d_model  ||Description of 1d model  ||  ||
||<page> ||Write descriptions for exercises 6-14 (divide all exercises into Tutorial exercises and Advanced exercises), Advanced examples->Research project examples   ||  ||
||wiki/doc/ ||Description of statistical methods (computation of fluxes and variances, horizontal averaging, etc.)  ||  ||
||wiki/doc/tec/wtm  ||Write documentation for wind turbine parametrization code  || [[span(style=color: #FF0000, Björn Witha)]] ||
|| ||Add additions/correction page for the Maronga et al. 2015 paper so that we can incorporate them in the next model description paper || ||
|| Tutorial ||  Various exercises and general presentation are since long time listed as "under construction". Links have been removed for now. ||  ||
||          || * Data visualization with VAPOR (see also comment in "Tools") ||  ||
||          || * Exercise 6: Cumulus cloud from cloud droplets ||  ||
||          || * Exercise 7: Ocean mixed layer ||  ||
||          || * Exercise 8: Atmosphere-ocean coupling ||  ||
||          || * Exercise 9: Canopy flow ||  ||
||          || * Exercise 12: Non-cyclic boundary conditions ||  ||
||          || * Exercise 13: Turbulence recycling ||  ||
||          || * Example: Footprints ||  ||
||          || * Example: Stable boundary layer (GABLS3) ||  ||
||          || * Cloud Physics up to date? ||  ||
\\

== Source Code ==
||='''Program parts'''  =||='''What to do?'''  =||='''Name'''  =||
||                       ||develop new GUI for parameter file generation ||  ||
||PALM code  || a clear separation between nz and nzt is necessary. Sometimes zw(nz) is used, sometimes zw(nzt). Also loops are limited to nz or nzt.  || Sebastian ||
||PALM code  ||remove the {{{iwp}}} (working precision for INTEGERS), because many routines (e.g. MPI) cannot handle others than 32bit INTEGER ||  ||
||PALM code  ||code clearing and restructuring following programmer guidelines of DWD/DMI  ||[[span(style=color: #FF0000, all, Siggi )]]  ||
||<page>  ||Subgrid-scale saturation fluctuation for Lagrangian cloud model  ||[[span(style=color: #FF0000, Johannes)]]  ||
||data_output  ||implement output of scalar and momentum fluxes calculated by temporal EC ||  ||
||PALM code  ||For reference_state='horizontal_average' round the averaged profile (e.g. 3.3 digits) to make runs repeatable || [[span(style=color: #FF0000, Siggi)]] ||
||PALM code  ||Avoid repeating code blocks in {{{data_output}}} routines and use subroutines instead ||  ||
||PALM code  ||Avoid unnecessary grid checks when using multi grid solver ||??  ||
|| data_output || In profile output define zu and zw only once instead of define a vertical dimension for each individual variable (e.g. zpt, zw"u, zw"v, ...) || ||
|| data_output || When calculating vertical cross sections averaged along x or y, leave out topography || ||
|| data_output || Do not output ghost points in masked output ||[[span(style=color: #FF0000, Siggi)]]  ||
|| PALM code || Separate option "cyclic_fill" from restart run to avoid unwanted effects (e.g. surface heat flux value in namelist of a run using "cyclic_fill" will always be overwritten by the value used in the precursor run). ||[[span(style=color: #FF0000, Björn / Tobias)]] ||
|| PALM code || define dimensions of data_output, data_output_pr, etc. as variables (avoid fixed numbers in code) || ||
|| PALM code || Implement a more flexible y-shift method for non-cyclic but also for cyclic runs || [[span(style=color: #FF0000, Simon)]] ||
|| PALM code || Review summation of "1E-5_wp" in mixing_length_les (turbulence_closure_mod), see ticket:393 ||[[span(style=color: #FF0000, Tobias)]]  ||
|| PALM code   || for consistency reasons, implement "initial gradient" top boundary conditions for the mixing ratio too ||[[span(style=color: #FF0000, Johannes)]] ||
|| RRTMG coupling   || allow for dry runs with RRTMG (might lead to unrealistic results if the atmosphere is considered totally dry!) ||[[span(style=color: #FF0000, Björn)]] ||
|| 1d-model  || fix 1d model to work without Coriolis force  [[span(style=color: #FF0000, why is this required? Siggi)]] ||    ||
|| check parameters || with psolver=multigrid, check that the subdomains can be divived by 2 at least once (see documentation of the multigrid). Is this still a problem? Needs to be checked. ||[[span(style=color: #FF0000, Siggi)]] ||
||Initialization || It needs to be clarified that the initial wind profile constructed by ug_surface, ug_vertical_gradient etc. describes the forcing by the geostrophic wind (pressure gradient), and at the same time depicts the initial actual-wind profile. [[span(style=color: #FF0000, just add better hints in docu)]]||[[span(style=color: #FF0000, Siggi)]]  ||
||NAMELISTs    || it should be possible to give output levels in real coordinates (m) instead of grid level, output should then be done for the nearest grid point ||[[span(style=color: #FF0000, Sebastian)]] ||
|| data_output || all output checks should be done BEFORE the first time step, and not when the first output is done ||   ||
||Nesting output || additional output of nesting information is required (e.g. in header): for root domain: number of nested domains, name of nested domains, number of nesting levels;  for each domain: position of the nest domains given in grid index number range, e.g. (20..40,10:15), also position of lower left corners in physical coordinates? ||    ||
|| PALM code || routine {{{global_min_max}}} does not work for mode 'min', 'max', and 'minmax'. ||  Tobias  ||
|| PALM code || discuss using Fortran Intrinsic Function "SUM" instead of loops as done many times in the code || all (KS) ||
||initializing_actions|| discuss use of initializing_actions='user', because its usage requires good code knowledge and the advantage over using 'set_constant_profiles' and later overwriting variables in user_init_3d_model.f90 is not clear [[span(style=color: #FF0000, just give better explanations in the docu. Siggi)]]|| all (KS) ||
||PALM code    ||Revise vertical loops in plant-canopy model in order to get rid-off 2D-index array pch_index ||Matthias ||
||PALM code    ||File local_system.f90 has become redundant since SYSTEM subroutine is intrinsic. After a year of no issues with this, remove local_system calls and replace with SYSTEM calls everywhere (2018-05-22) ||tba ||
||data_output  ||If profiles are to be saved at t=0, save all profiles, i.e., do not use '#' character but use something like 'dopr_at_begin'.||    ||
||PALM code    ||Since r3999 nbgp=3 is always used if the nesting is switched on, even in the case that the Piascek-Williams scheme is used. We need to ask Antti to make the inter-/anterpolation independent from nbgp. ||     ||
\\
== Code performance==
||  ||define setups for scaling / benchmark runs  ||Björn, Siggi, Fabian  ||
||  ||carry out runs to determine PALM's weak/strong scaling behaviour + parallel efficiency,  this might be good to be carried out during the test phase of the HLRNIV  ||?  ||
||   ||debug ex_lsm_clearsky and reincorporate it to standard test cases || Björn, Katrin ||
\\
== Tools==
||-  ||extend PALM grid finder for nesting configurations  ||Hiwi ||
||-  ||tool for finding vertical grid configuration with grid stretching (maybe as part of palm_gf) || Katrin+HiWi ||
\\
== Variable descriptions\\
Please delete entries that you have taken care of. 
See the attached bash [raw-attachment:missing_description script] to check that you missed nothing or to update the list.
||='''File'''  =||='''Line'''  =||='''routine, function or module'''  =||='''responsible'''  =||='''notes'''  =||
||advec_s_bc.f90	||	||	||Siggi	||	||
||	||134	||SUBROUTINE advec_s_bc   	||	||	||
||buoyancy.f90	||	||    	||Siggi	||	||
||	||131	||SUBROUTINE buoyancy   	||	||	||
||	||237	||SUBROUTINE buoyancy_ij   	||	||	||
||calc_liquid_water_content.f90	||	||    	||Johannes	||	||
||	||93	||SUBROUTINE calc_liquid_water_content   	||	||	||
||calc_mean_profile.f90	||	||    	||Farah	||	||
||	||82	||SUBROUTINE calc_mean_profile   	||	||	||
||calc_radiation.f90	||	||    	||Siggi	||	||
||	||77	||MODULE calc_radiation_mod   	||	||	||
||	||104	||SUBROUTINE calc_radiation   	||	||	||
||	||253	||SUBROUTINE calc_radiation_ij   	||	||	||
||check_for_restart.f90	||	||    	||Sebastian	||	||
||	||79	||SUBROUTINE check_for_restart   	||	||	||
||check_open.f90	||	||    	||Siggi	||	||
||	||165	||SUBROUTINE check_open   	||	||	||
||chem_gasphase_mod.f90	||	||    	||Farah → others	||Coding standard..?	||
||	||1	||MODULE chem_gasphase_mod   	||	||	||
||	||693	||SUBROUTINE initialize   	||	||	||
||	||722	||SUBROUTINE integrate   	||	||	||
||	||776	||SUBROUTINE fun   	||	||	||
||	||796	||SUBROUTINE kppsolve   	||	||	||
||	||808	||SUBROUTINE kppdecomp   	||	||	||
||	||845	||REAL(kind=dp)FUNCTION wlamch   	||	||	||
||	||887	||SUBROUTINE jac_sp   	||	||	||
||	||916	||elemental REAL(kind=dp)FUNCTION k_arr  	||	||	||
||	||929	||SUBROUTINE update_rconst   	||	||	||
||	||944	||REAL(kind=dp)FUNCTION arr2   	||	||	||
||	||950	||SUBROUTINE initialize_kpp_ctrl   	||	||	||
||	||1002	||SUBROUTINE error_output   	||	||	||
||	||1014	||SUBROUTINE wcopy   	||	||	||
||	||1050	||SUBROUTINE wscal   	||	||	||
||	||1112	||SUBROUTINE waxpy   	||	||	||
||	||1145	||SUBROUTINE rosenbrock   	||	||	||
||	||1437	||SUBROUTINE ros_errormsg   	||	||	||
||	||1477	||SUBROUTINE ros_integrator   	||	||	||
||	||1680	||REAL    	||	||	||
||	||1713	||SUBROUTINE ros_funtimederivative   	||	||	||
||	||1737	||SUBROUTINE ros_preparematrix   	||	||	||
||	||1818	||SUBROUTINE ros_decomp   	||	||	||
||	||1843	||SUBROUTINE ros_solve   	||	||	||
||	||2290	||SUBROUTINE funtemplate   	||	||	||
||	||2309	||SUBROUTINE jactemplate   	||	||	||
||	||2347	||SUBROUTINE chem_gasphase_integrate   	||	||	||
||	||2416	||SUBROUTINE fill_temp   	||	||	||
||chemistry_model_mod.f90	||	||    	||Farah → others	||	||
||	||119	||MODULE chemistry_model_mod   	||	||	||
||	||284	||SUBROUTINE chem_boundary_conds   	||	||	||
||	||718	||SUBROUTINE set_const_initial_values   	||	||	||
||	||889	||SUBROUTINE chem_integrate_ij   	||	||	||
||	||987	||SUBROUTINE chem_swap_timelevel   	||	||	||
||	||1019	||SUBROUTINE chem_define_netcdf_grid   	||	||	||
||	||1053	||SUBROUTINE chem_check_data_output   	||	||	||
||	||1103	||SUBROUTINE chem_check_data_output_pr   	||	||	||
||	||1157	||SUBROUTINE chem_data_output_3d   	||	||	||
||	||1240	||SUBROUTINE chem_3d_data_averaging   	||	||	||
||	||1338	||SUBROUTINE chem_wrd_local   	||	||	||
||	||1368	||SUBROUTINE chem_rrd_local   	||	||	||
||	||1446	||SUBROUTINE chem_prognostic_equations_ij   	||	||	||
||	||1548	||SUBROUTINE chem_prognostic_equations   	||	||	||
||chem_modules.f90	||	||    	||Farah → others	||	||
||	||49	||MODULE chem_modules   	||	||	||
||chem_photolysis_mod.f90	||	||    	||Farah → others	||Coding standard..?	||
||	||47	||MODULE chem_photolysis_mod   	||	||	||
||close_file.f90	||	||    	||Siggi	||	||
||	||86	||SUBROUTINE close_file   	||	||	||
||compute_vpt.f90	||	||    	||Johannes	||	||
||	||65	||SUBROUTINE compute_vpt   	||	||	||
||coriolis.f90	||	||    	||Siggi	||	||
||	||105	||SUBROUTINE coriolis   	||	||	||
||	||208	||SUBROUTINE coriolis_ij   	||	||	||
||cpulog_mod.f90	||	||    	||Siggi	||check module description → too detailed	||
||	||159	||MODULE PROCEDURE cpu_statistics  	||	||	||
||	||200	||SUBROUTINE cpu_log   	||	||	||
||	||309	||SUBROUTINE cpu_statistics   	||	||	||
||data_log.f90	||	||    	||Siggi	||	||
||	||61	||SUBROUTINE data_log   	||	||	||
||	||111	||SUBROUTINE data_log_2d   	||	||	||
||	||159	||SUBROUTINE data_log_2d_int   	||	||	||
||data_output_ptseries.f90	||	||    	||Johannes	||	||
||	||83	||SUBROUTINE data_output_ptseries   	||	||	||
||	||240	||SUBROUTINE output_spectra_netcdf   	||	||	||
||data_output_tseries.f90	||	||    	||Sebastian	||	||
||	||76	||SUBROUTINE data_output_tseries   	||	||	||
||diagnostic_quantities_mod.f90	||	||    	||Johannes	||	||
||	||77	||SUBROUTINE supersaturation   	||	||	||
||	||127	||FUNCTION magnus   	||	||	||
||disturb_field.f90	||	||    	||Helge	||	||
||	||86	||SUBROUTINE disturb_field   	||	||	||
||disturb_heatflux.f90	||	||    	||Helge	||	||
||	||74	||SUBROUTINE disturb_heatflux   	||	||	||
||eqn_state_seawater.f90	||	||    	||Siggi	||	||
||	||84	||MODULE eqn_state_seawater_mod   	||	||	||
||	||130	||SUBROUTINE eqn_state_seawater   	||	||	||
||	||244	||SUBROUTINE eqn_state_seawater_ij   	||	||	||
||	||350	||REAL(wp) FUNCTION eqn_state_seawater_func  	||	||	||
||exchange_horiz_2d.f90	||	||    	||Simon	||	||
||	||82	||SUBROUTINE exchange_horiz_2d   	||	||	||
||exchange_horiz.f90	||	||    	||Simon	||	||
||	||96	||SUBROUTINE exchange_horiz   	||	||	||
||fft_xy_mod.f90	||	||    	||Siggi (Ketelsen)	||	||
||	||146	||MODULE fft_xy   	||	||	||
||	||265	||SUBROUTINE fft_init   	||	||	||
||	||397	||SUBROUTINE fft_x   	||	||	||
||	||749	||SUBROUTINE fft_x_1d   	||	||	||
||	||984	||SUBROUTINE fft_y   	||	||	||
||	||1314	||SUBROUTINE fft_y_1d   	||	||	||
||	||1539	||SUBROUTINE fft_x_m   	||	||	||
||	||1679	||SUBROUTINE fft_y_m   	||	||	||
||flow_statistics.f90	||	||    	||Siggi	||	||
||	||272	||SUBROUTINE flow_statistics   	||	||	||
||global_min_max.f90	||	||    	||Siggi	||	||
||	||68	||SUBROUTINE global_min_max   	||	||	||
||gust_mod.f90	||	||    	||Helge	||	||
||	||219	||SUBROUTINE gust_check_data_output_pr   	||	||	||
||	||238	||SUBROUTINE gust_check_data_output   	||	||	||
||	||269	||SUBROUTINE gust_init   	||	||	||
||	||290	||SUBROUTINE gust_define_netcdf_grid   	||	||	||
||	||326	||SUBROUTINE gust_actions   	||	||	||
||	||342	||SUBROUTINE gust_actions_ij   	||	||	||
||	||361	||SUBROUTINE gust_swap_timelevel   	||	||	||
||	||378	||SUBROUTINE gust_3d_data_averaging   	||	||	||
||	||395	||SUBROUTINE gust_data_output_2d   	||	||	||
||	||425	||SUBROUTINE gust_data_output_3d   	||	||	||
||	||451	||SUBROUTINE gust_statistics   	||	||	||
||	||471	||SUBROUTINE gust_rrd_global   	||	||	||
||	||506	||SUBROUTINE gust_rrd_local   	||	||	||
||init_advec.f90	||	||    	||Siggi	||	||
||	||75	||SUBROUTINE init_advec   	||	||	||
||init_cloud_physics.f90	||	||    	||Johannes	||	||
||	||93	||SUBROUTINE init_cloud_physics   	||	||	||
||init_coupling.f90	||	||    	||Siggi	||change file name?	||
||	||71	||SUBROUTINE init_coupling   	||	||	||
||init_ocean.f90	||	||    	||Siggi	||	||
||	||83	||SUBROUTINE init_ocean   	||	||	||
||init_rankine.f90	||	||    	||Siggi	||rename betrag, check necessity	||
||	||66	||SUBROUTINE init_rankine   	||	||	||
||init_slope.f90	||	||    	||Siggi	||	||
||	||68	||SUBROUTINE init_slope   	||	||	||
||land_surface_model_mod.f90	||	||    	||Björn	||	||
||	||396	||MODULE land_surface_model_mod   	||	||	||
||	||1069	||SUBROUTINE lsm_check_data_output   	||	||	||
||	||1185	||SUBROUTINE lsm_check_data_output_pr   	||	||	||
||	||1653	||SUBROUTINE lsm_energy_balance   	||	||	||
||	||4839	||SUBROUTINE lsm_soil_model   	||	||	||
||	||5166	||SUBROUTINE lsm_swap_timelevel   	||	||	||
||	||5249	||SUBROUTINE lsm_3d_data_averaging   	||	||	||
||	||5590	||SUBROUTINE lsm_define_netcdf_grid   	||	||	||
||	||5627	||SUBROUTINE lsm_data_output_2d   	||	||	||
||	||5931	||SUBROUTINE lsm_data_output_3d   	||	||	||
||	||6199	||SUBROUTINE lsm_rrd_local   	||	||	||
||large_scale_forcing_nudging_mod.f90	||	||    	||Matthias	||postponed, will completely revised when changed to Inifor steering	||
||	||62	||MODULE lsf_nudging_mod   	||	||	||
||	||165	||SUBROUTINE forcing_bc_mass_conservation   	||	||	||
||	||779	||SUBROUTINE lsf_nudging_check_data_output_pr   	||	||	||
||	||998	||SUBROUTINE lsf_init   	||	||	||
||	||1420	||SUBROUTINE ls_forcing_surf   	||	||	||
||	||1507	||SUBROUTINE ls_forcing_vert   	||	||	||
||	||1545	||SUBROUTINE ls_advec   	||	||	||
||	||1648	||SUBROUTINE ls_advec_ij   	||	||	||
||	||1734	||SUBROUTINE nudge_init   	||	||	||
||	||1887	||SUBROUTINE calc_tnudge   	||	||	||
||	||1921	||SUBROUTINE nudge   	||	||	||
||	||2058	||SUBROUTINE nudge_ij   	||	||	||
||	||2173	||SUBROUTINE nudge_ref   	||	||	||
||local_system.f90	||	||    	||Siggi	|| no longer necessary	||
||	||56	||SUBROUTINE local_system   	||	||	||
||local_tremain.f90	||	||    	||Sebastian	|| rename count (is intrinsic function)	||
||	||68	||SUBROUTINE local_tremain   	||	||	||
||local_tremain_ini.f90	||	||    	||Sebastian	|| rename count (is intrinsic function)	||
||	||68	||SUBROUTINE local_tremain_ini   	||	||	||
||lpm_calc_liquid_water_content.f90	||	||    	||Johannes	||	||
||	||65	||SUBROUTINE lpm_calc_liquid_water_content   	||	||	||
||lpm_collision_kernels.f90	||	||    	||Johannes	||	||
||	||134	||MODULE lpm_collision_kernels_mod   	||	||	||
||	||196	||SUBROUTINE init_kernels   	||	||	||
||	||317	||SUBROUTINE recalculate_kernel   	||	||	||
||	||403	||SUBROUTINE turbsd   	||	||	||
||	||574	||REAL(wp) FUNCTION phi_w  	||	||	||
||	||591	||REAL(wp) FUNCTION zhi  	||	||	||
||	||631	||SUBROUTINE fallg   	||	||	||
||	||671	||SUBROUTINE effic   	||	||	||
||	||843	||SUBROUTINE turb_enhance_eff   	||	||	||
||lpm_data_output_particles.f90	||	||    	||Johannes	||	||
||	||72	||SUBROUTINE lpm_data_output_particles   	||	||	||
||lpm_droplet_collision.f90	||	||    	||Johannes	||	||
||	||113	||SUBROUTINE lpm_droplet_collision   	||	||	||
||lpm_droplet_condensation.f90	||	||    	||Johannes	||	||
||	||122	||SUBROUTINE lpm_droplet_condensation   	||	||	||
||lpm_exchange_horiz.f90	||	||    	||Johannes	||	||
||	||150	||MODULE lpm_exchange_horiz_mod   	||	||	||
||	||886	||SUBROUTINE Add_particles_to_gridcell   	||	||	||
||	||1187	||SUBROUTINE realloc_particles_array   	||	||	||
||	||1244	||SUBROUTINE dealloc_particles_array   	||	||	||
||lpm.f90	||	||    	||Johannes	||	||
||	||204	||SUBROUTINE lpm   	||	||	||
||lpm_init.f90	||	||    	||Johannes	||	||
||	||206	||MODULE lpm_init_mod   	||	||	||
||	||288	||SUBROUTINE lpm_init   	||	||	||
||	||1035	||SUBROUTINE lpm_init_aerosols   	||	||	||
||lpm_merging.f90	||	||    	||Johannes	||	||
||	||50	||SUBROUTINE lpm_merging   	||	||	||
||lpm_pack_arrays.f90	||	||    	||Johannes	||	||
||	||123	||SUBROUTINE lpm_sort_in_subboxes   	||	||	||
||	||220	||SUBROUTINE lpm_pack   	||	||	||
||lpm_read_restart_file.f90	||	||    	||Johannes	||	||
||	||78	||SUBROUTINE lpm_read_restart_file   	||	||	||
||lpm_set_attributes.f90	||	||    	||Johannes	||	||
||	||78	||SUBROUTINE lpm_set_attributes   	||	||	||
||lpm_write_exchange_statistics.f90	||	||    	||Johannes	||	||
||	||80	||SUBROUTINE lpm_write_exchange_statistics   	||	||	||
||lpm_write_restart_file.f90	||	||    	||Johannes	||	||
||	||67	||SUBROUTINE lpm_write_restart_file   	||	||	||
||message.f90	||	||    	||Sebastian	||	||
||	||89	||SUBROUTINE message   	||	||	||
||	||256	||SUBROUTINE location_message   	||	||	||
||microphysics_mod.f90	||	||    	||Johannes	||	||
||	||166	||MODULE microphysics_mod   	||	||	||
||	||391	||SUBROUTINE microphysics_control   	||	||	||
||	||485	||SUBROUTINE adjust_cloud   	||	||	||
||	||555	||SUBROUTINE activation   	||	||	||
||	||683	||SUBROUTINE condensation   	||	||	||
||	||786	||SUBROUTINE autoconversion   	||	||	||
||	||932	||SUBROUTINE autoconversion_kessler   	||	||	||
||	||996	||SUBROUTINE accretion   	||	||	||
||	||1095	||SUBROUTINE selfcollection_breakup   	||	||	||
||	||1172	||SUBROUTINE evaporation_rain   	||	||	||
||	||1318	||SUBROUTINE sedimentation_cloud   	||	||	||
||	||1433	||SUBROUTINE sedimentation_rain   	||	||	||
||	||1758	||SUBROUTINE microphysics_control_ij   	||	||	||
||	||1881	||SUBROUTINE adjust_cloud_ij   	||	||	||
||	||1944	||SUBROUTINE activation_ij   	||	||	||
||	||2084	||SUBROUTINE condensation_ij   	||	||	||
||	||2194	||SUBROUTINE autoconversion_ij   	||	||	||
||	||2323	||SUBROUTINE autoconversion_kessler_ij   	||	||	||
||	||2381	||SUBROUTINE accretion_ij   	||	||	||
||	||2470	||SUBROUTINE selfcollection_breakup_ij   	||	||	||
||	||2531	||SUBROUTINE evaporation_rain_ij   	||	||	||
||	||2677	||SUBROUTINE sedimentation_cloud_ij   	||	||	||
||	||2776	||SUBROUTINE sedimentation_rain_ij   	||	||	||
||	||3070	||FUNCTION gamm   	||	||	||
||mod_particle_attributes.f90	||	||    	||Johannes	||	||
||	||102	||MODULE particle_attributes   	||	||	||
||modules.f90	||	||    	||Sebastian	||	||
||	||1900	||MODULE pegrid   	||	||	||
||netcdf_data_input_mod.f90	||	||    	||Matthias	||	||
||	||121	||MODULE netcdf_data_input_mod   	||	||	||
||	||1991	||SUBROUTINE netcdf_data_input_init_3d   	||	||	||
||	||3773	||SUBROUTINE open_read_file   	||	||	||
||	||4209	||SUBROUTINE get_variable_3d_int8   	||	||	||
||	||4253	||SUBROUTINE get_variable_3d_real   	||	||	||
||	||4297	||SUBROUTINE get_variable_3d_real_v   	||	||	||
||	||4374	||SUBROUTINE get_variable_4d_real   	||	||	||
||	||4511	||SUBROUTINE handle_error   	||	||	||
||netcdf_interface_mod.f90	||	||    	||Tobias	||wont-fix: routine will be replaced ||
||	||266	||MODULE netcdf_interface   	||	||	||
||package_parin.f90	||	||    	||Johannes	||	||
||	||158	||SUBROUTINE package_parin   	||	||	||
||parin.f90	||	||    	||Simon	||replace i with ii	||
||	||380	||SUBROUTINE parin   	||	||	||
||plant_canopy_model_mod.f90	||	||    	||Farah	||	||
||	||303	||SUBROUTINE pcm_check_data_output   	||	||	||
||	||417	||SUBROUTINE pcm_data_output_3d   	||	||	||
||	||507	||SUBROUTINE pcm_define_netcdf_grid   	||	||	||
||	||543	||SUBROUTINE pcm_header   	||	||	||
||	||660	||SUBROUTINE pcm_init   	||	||	||
||	||1089	||SUBROUTINE pcm_read_plant_canopy_3d   	||	||	||
||pmc_child_mod.f90	||	||    	||Ketelsen	||	||
||	||1	||MODULE pmc_child   	||	||	||
||	||180	||SUBROUTINE pmc_childinit   	||	||	||
||	||212	||SUBROUTINE pmc_set_dataarray_name   	||	||	||
||	||281	||SUBROUTINE pmc_set_dataarray_name_lastentry   	||	||	||
||	||305	||SUBROUTINE pmc_c_get_2d_index_list   	||	||	||
||	||420	||LOGICAL FUNCTION pmc_c_getnextarray  	||	||	||
||	||457	||SUBROUTINE pmc_c_set_dataarray_2d   	||	||	||
||	||490	||SUBROUTINE pmc_c_set_dataarray_ip2d   	||	||	||
||	||522	||SUBROUTINE pmc_c_set_dataarray_3d   	||	||	||
||	||558	||SUBROUTINE pmc_c_setind_and_allocmem   	||	||	||
||	||730	||SUBROUTINE pmc_c_getbuffer   	||	||	||
||	||865	||SUBROUTINE pmc_c_putbuffer   	||	||	||
||pmc_general_mod.f90	||	||    	||Ketelsen	||	||
||	||1	||MODULE pmc_general   	||	||	||
||	||175	||SUBROUTINE pmc_g_setname   	||	||	||
||	||202	||SUBROUTINE sort_2d_i   	||	||	||
||pmc_handle_communicator_mod.f90	||	||    	||Ketelsen	||	||
||	||116	||MODULE PMC_handle_communicator   	||	||	||
||	||186	||SUBROUTINE pmc_init_model   	||	||	||
||	||398	||SUBROUTINE pmc_get_model_info   	||	||	||
||	||474	||SUBROUTINE read_coupling_layout   	||	||	||
||pmc_interface_mod.f90	||	||    	||Ketelsen	||	||
||	||287	||MODULE pmc_interface   	||	||	||
||	||674	||SUBROUTINE pmci_init   	||	||	||
||	||800	||SUBROUTINE pmci_setup_parent   	||	||	||
||	||1055	||SUBROUTINE pmci_create_index_list   	||	||	||
||	||1161	||SUBROUTINE set_child_edge_coords   	||	||	||
||	||1203	||SUBROUTINE pmci_setup_child   	||	||	||
||	||1448	||SUBROUTINE pmci_map_fine_to_coarse_grid   	||	||	||
||	||1546	||SUBROUTINE pmci_init_interp_tril   	||	||	||
||	||1658	||SUBROUTINE pmci_init_loglaw_correction   	||	||	||
||	||2679	||SUBROUTINE pmci_define_loglaw_correction_parameters   	||	||	||
||	||2787	||SUBROUTINE pmci_find_logc_pivot_k   	||	||	||
||	||2824	||SUBROUTINE pmci_find_logc_pivot_j   	||	||	||
||	||2883	||SUBROUTINE pmci_find_logc_pivot_i   	||	||	||
||	||2942	||FUNCTION pmci_find_nearest_coarse_grid_index_j   	||	||	||
||	||2966	||FUNCTION pmci_find_nearest_coarse_grid_index_i   	||	||	||
||	||2990	||SUBROUTINE pmci_init_anterp_tophat   	||	||	||
||	||3289	||SUBROUTINE pmci_init_tkefactor   	||	||	||
||	||3450	||SUBROUTINE pmci_setup_coordinates   	||	||	||
||	||3477	||SUBROUTINE pmci_set_array_pointer   	||	||	||
||	||3605	||INTEGER FUNCTION get_childid  	||	||	||
||	||3622	||SUBROUTINE get_child_edges   	||	||	||
||	||3647	||SUBROUTINE get_child_gridspacing   	||	||	||
||	||3662	||SUBROUTINE pmci_create_child_arrays   	||	||	||
||	||3768	||SUBROUTINE pmci_parent_initialize   	||	||	||
||	||3792	||SUBROUTINE pmci_child_initialize   	||	||	||
||	||3918	||SUBROUTINE pmci_interp_tril_all   	||	||	||
||	||4077	||SUBROUTINE pmci_check_setting_mismatches   	||	||	||
||	||4172	||SUBROUTINE pmci_ensure_nest_mass_conservation   	||	||	||
||	||4298	||SUBROUTINE pmci_synchronize   	||	||	||
||	||4322	||SUBROUTINE pmci_set_swaplevel   	||	||	||
||	||4346	||SUBROUTINE pmci_datatrans   	||	||	||
||	||4402	||SUBROUTINE pmci_parent_datatrans   	||	||	||
||	||4473	||SUBROUTINE pmci_child_datatrans   	||	||	||
||	||5139	||SUBROUTINE pmci_interp_tril_lr   	||	||	||
||	||5358	||SUBROUTINE pmci_interp_tril_sn   	||	||	||
||	||5574	||SUBROUTINE pmci_interp_tril_t   	||	||	||
||pmc_mpi_wrapper_mod.f90	||	||    	||Ketelsen	||	||
||	||1	||MODULE pmc_mpi_wrapper   	||	||	||
||	||156	||SUBROUTINE pmc_recv_from_parent_logical   	||	||	||
||	||173	||SUBROUTINE pmc_send_to_child_logical   	||	||	||
||	||193	||SUBROUTINE pmc_send_to_parent_integer   	||	||	||
||	||211	||SUBROUTINE pmc_recv_from_parent_integer   	||	||	||
||	||230	||SUBROUTINE pmc_send_to_parent_integer_2   	||	||	||
||	||249	||SUBROUTINE pmc_send_to_parent_real_r1   	||	||	||
||	||267	||SUBROUTINE pmc_recv_from_parent_real_r1   	||	||	||
||	||286	||SUBROUTINE pmc_send_to_parent_real_r2   	||	||	||
||	||303	||SUBROUTINE pmc_recv_from_parent_real_r2   	||	||	||
||	||321	||SUBROUTINE pmc_send_to_parent_real_r3   	||	||	||
||	||339	||SUBROUTINE pmc_recv_from_parent_real_r3   	||	||	||
||	||357	||SUBROUTINE pmc_send_to_child_integer   	||	||	||
||	||378	||SUBROUTINE pmc_recv_from_child_integer   	||	||	||
||	||399	||SUBROUTINE pmc_recv_from_child_integer_2   	||	||	||
||	||420	||SUBROUTINE pmc_send_to_child_real_r1   	||	||	||
||	||441	||SUBROUTINE pmc_recv_from_child_real_r1   	||	||	||
||	||462	||SUBROUTINE pmc_send_to_child_real_r2   	||	||	||
||	||483	||SUBROUTINE pmc_recv_from_child_real_r2   	||	||	||
||	||504	||SUBROUTINE pmc_send_to_child_real_r3   	||	||	||
||	||525	||SUBROUTINE pmc_recv_from_child_real_r3   	||	||	||
||	||546	||SUBROUTINE pmc_bcast_integer   	||	||	||
||	||575	||SUBROUTINE pmc_bcast_character   	||	||	||
||	||604	||SUBROUTINE pmc_inter_bcast_integer_1   	||	||	||
||	||643	||SUBROUTINE pmc_alloc_mem_integer_1   	||	||	||
||	||669	||SUBROUTINE pmc_alloc_mem_real_1   	||	||	||
||	||698	||FUNCTION pmc_time   	||	||	||
||pmc_parent_mod.f90	||	||    	||Ketelsen	||	||
||	||1	||MODULE pmc_parent   	||	||	||
||	||193	||SUBROUTINE pmc_parentinit   	||	||	||
||	||243	||SUBROUTINE pmc_s_set_2d_index_list   	||	||	||
||	||329	||LOGICAL FUNCTION pmc_s_getnextarray  	||	||	||
||	||364	||SUBROUTINE pmc_s_set_dataarray_2d   	||	||	||
||	||395	||SUBROUTINE pmc_s_set_dataarray_ip2d   	||	||	||
||	||419	||SUBROUTINE pmc_s_set_dataarray_3d   	||	||	||
||	||457	||SUBROUTINE pmc_s_setind_and_allocmem   	||	||	||
||	||622	||SUBROUTINE pmc_s_fillbuffer   	||	||	||
||	||716	||SUBROUTINE pmc_s_getdata_from_buffer   	||	||	||
||	||852	||SUBROUTINE get_da_names_from_child   	||	||	||
||	||878	||SUBROUTINE pmc_s_setarray   	||	||	||
||	||919	||SUBROUTINE pmc_s_set_active_data_array   	||	||	||
||	||946	||INTEGER FUNCTION pmc_s_get_child_npes  	||	||	||
||	||957	||SUBROUTINE set_pe_index_list   	||	||	||
||pmc_particle_interface.f90	||	||    	||Ketelsen	||	||
||	||1	||MODULE pmc_particle_interface   	||	||	||
||	||234	||SUBROUTINE pmcp_g_alloc_win   	||	||	||
||	||315	||SUBROUTINE pmcp_c_get_particle_from_parent   	||	||	||
||	||389	||SUBROUTINE pmcp_c_send_particle_to_parent   	||	||	||
||	||506	||SUBROUTINE pmcp_p_fill_particle_win   	||	||	||
||	||649	||SUBROUTINE pmcp_p_empty_particle_win   	||	||	||
||	||769	||SUBROUTINE pmcp_g_print_number_of_particles   	||	||	||
||	||832	||SUBROUTINE check_and_alloc_coarse_particle   	||	||	||
||	||967	||SUBROUTINE c_copy_particle_to_coarse_grid   	||	||	||
||	||1082	||SUBROUTINE p_copy_particle_to_org_grid   	||	||	||
||poisfft_mod.f90	||	||    	||Siggi	||	||
||	||153	||MODULE poisfft_mod   	||	||	||
||	||193	||SUBROUTINE poisfft_init   	||	||	||
||	||220	||SUBROUTINE poisfft   	||	||	||
||	||724	||SUBROUTINE ffty_tr_yx   	||	||	||
||	||857	||SUBROUTINE tr_xy_ffty   	||	||	||
||	||992	||SUBROUTINE fftx_tri_fftx   	||	||	||
||	||1136	||SUBROUTINE fftx_tr_xy   	||	||	||
||	||1249	||SUBROUTINE tr_yx_fftx   	||	||	||
||	||1362	||SUBROUTINE ffty_tri_ffty   	||	||	||
||poismg_mod.f90	||	||    	||Siggi	||	||
||	||148	||SUBROUTINE poismg   	||	||	||
||	||428	||SUBROUTINE restrict   	||	||	||
||	||566	||SUBROUTINE prolong   	||	||	||
||	||733	||SUBROUTINE redblack   	||	||	||
||	||1046	||SUBROUTINE sort_k_to_even_odd_blocks   	||	||	||
||	||1162	||SUBROUTINE sort_k_to_even_odd_blocks_int   	||	||	||
||	||1235	||SUBROUTINE sort_k_to_sequential   	||	||	||
||	||1291	||SUBROUTINE mg_gather   	||	||	||
||	||1372	||SUBROUTINE mg_scatter   	||	||	||
||	||1421	||RECURSIVE SUBROUTINE next_mg_level  	||	||	||
||	||1806	||SUBROUTINE init_even_odd_blocks   	||	||	||
||	||1870	||SUBROUTINE special_exchange_horiz   	||	||	||
||poismg_noopt_mod.f90	||	||    	||Siggi	||	||
||	||193	||SUBROUTINE poismg_noopt   	||	||	||
||	||342	||SUBROUTINE resid_noopt   	||	||	||
||	||487	||SUBROUTINE restrict_noopt   	||	||	||
||	||702	||SUBROUTINE prolong_noopt   	||	||	||
||	||813	||SUBROUTINE redblack_noopt   	||	||	||
||	||1286	||SUBROUTINE mg_gather_noopt   	||	||	||
||	||1368	||SUBROUTINE mg_scatter_noopt   	||	||	||
||	||1418	||RECURSIVE SUBROUTINE next_mg_level_noopt  	||	||	||
||	||1795	||SUBROUTINE poismg_noopt_init   	||	||	||
||pres.f90	||	||    	||Siggi	||	||
||	||155	||SUBROUTINE pres   	||	||	||
||print_1d.f90	||	||    	||Sebastian	||	||
||	||70	||SUBROUTINE print_1d   	||	||	||
||prognostic_equations.f90	||	||    	||Sebastian	||	||
||	||437	||SUBROUTINE prognostic_equations_cache   	||	||	||
||	||1353	||SUBROUTINE prognostic_equations_vector   	||	||	||
||progress_bar_mod.f90	||	||    	||Helge	||	||
||	||59	||MODULE progress_bar   	||	||	||
||radiation_model_mod.f90	||	||    	||Björn	||	||
||	||336	||MODULE radiation_model_mod   	||	||	||
||	||1047	||SUBROUTINE radiation_check_data_output   	||	||	||
||	||1113	||SUBROUTINE radiation_check_data_output_pr   	||	||	||
||	||2745	||SUBROUTINE radiation_rrtmg   	||	||	||
||	||3961	||SUBROUTINE read_trace_gas_data   	||	||	||
||	||4215	||SUBROUTINE netcdf_handle_error_rad   	||	||	||
||	||4328	||SUBROUTINE radiation_interaction   	||	||	||
||	||4870	||PURE SUBROUTINE box_absorb  	||	||	||
||	||4942	||SUBROUTINE calc_diffusion_radiation   	||	||	||
||	||5008	||SUBROUTINE radiation_interaction_init   	||	||	||
||	||5334	||SUBROUTINE radiation_calc_svf   	||	||	||
||	||6062	||SUBROUTINE raytrace   	||	||	||
||	||6253	||SUBROUTINE raytrace_2d   	||	||	||
||	||6606	||SUBROUTINE radiation_presimulate_solar_pos   	||	||	||
||	||6700	||PURE LOGICAL FUNCTION surface_facing 	||	||	||
||	||6760	||SUBROUTINE radiation_read_svf   	||	||	||
||	||6893	||SUBROUTINE radiation_write_svf   	||	||	||
||	||6944	||PURE FUNCTION svf_lt  	||	||	||
||	||6960	||RECURSIVE SUBROUTINE quicksort_svf  	||	||	||
||	||6988	||PURE FUNCTION csf_lt  	||	||	||
||	||7009	||RECURSIVE SUBROUTINE quicksort_csf  	||	||	||
||	||7037	||SUBROUTINE merge_and_grow_csf   	||	||	||
||	||7121	||RECURSIVE SUBROUTINE quicksort_csf2  	||	||	||
||	||7152	||PURE FUNCTION csf_lt2  	||	||	||
||	||7162	||PURE FUNCTION searchsorted  	||	||	||
||	||7301	||SUBROUTINE radiation_3d_data_averaging   	||	||	||
||	||7626	||SUBROUTINE radiation_define_netcdf_grid   	||	||	||
||	||7677	||SUBROUTINE radiation_data_output_2d   	||	||	||
||	||7951	||SUBROUTINE radiation_data_output_3d   	||	||	||
||	||8180	||SUBROUTINE radiation_data_output_mask   	||	||	||
||	||8491	||SUBROUTINE radiation_rrd_local   	||	||	||
||	||8796	||SUBROUTINE radiation_write_debug_log   	||	||	||
||random_function_mod.f90	||	||    	||Helge	|| merge into random_generator_parallel_mod.f90?	||
||	||73	||MODULE random_function_mod   	||	||	||
||	||111	||FUNCTION random_function   	||	||	||
||random_gauss.f90	||	||    	||Siggi	|| merge into random_generator_parallel_mod.f90?	||
||	||66	||FUNCTION random_gauss   	||	||	||
||random_generator_parallel_mod.f90	||	||    	||Helge	||	||
||	||73	||MODULE random_generator_parallel   	||	||	||
||	||142	||SUBROUTINE init_parallel_random_generator   	||	||	||
||	||198	||SUBROUTINE ran0_s   	||	||	||
||	||234	||SUBROUTINE ran_init   	||	||	||
||	||354	||SUBROUTINE random_seed_parallel   	||	||	||
||	||407	||SUBROUTINE ran_hash_v   	||	||	||
||	||453	||FUNCTION reallocate_iv   	||	||	||
||	||483	||FUNCTION reallocate_im   	||	||	||
||	||522	||FUNCTION arth_i   	||	||	||
||read_restart_data_mod.f90	||	||    	||Sebastian	||	||
||	||88	||SUBROUTINE rrd_global   	||	||	||
||	||808	||SUBROUTINE rrd_read_parts_of_global   	||	||	||
||	||1036	||SUBROUTINE rrd_local   	||	||	||
||	||2065	||SUBROUTINE rrd_skip_global   	||	||	||
||run_control.f90	||	||    	||Sebastian	||	||
||	||79	||SUBROUTINE run_control   	||	||	||
||singleton_mod.f90	||	||    	||Siggi	||edit description	||
||	||167	||MODULE singleton   	||	||	||
||	||201	||FUNCTION fft1d   	||	||	||
||	||230	||FUNCTION fft2d   	||	||	||
||	||258	||FUNCTION fft3d   	||	||	||
||	||288	||FUNCTION fft4d   	||	||	||
||	||317	||FUNCTION fft5d   	||	||	||
||	||348	||FUNCTION fft6d   	||	||	||
||	||379	||FUNCTION fft7d   	||	||	||
||	||410	||SUBROUTINE fftn   	||	||	||
||	||468	||SUBROUTINE fftradix   	||	||	||
||	||535	||SUBROUTINE factorize   	||	||	||
||	||604	||SUBROUTINE transform   	||	||	||
||	||959	||SUBROUTINE permute   	||	||	||
||sor.f90	||	||    	||Siggi	||	||
||	||70	||SUBROUTINE sor   	||	||	||
||spectra_mod.f90	||	||    	||Siggi	||coding standard	||
||	||126	||MODULE spectra_mod   	||	||	||
||	||413	||SUBROUTINE calc_spectra   	||	||	||
||	||546	||SUBROUTINE preprocess_spectra   	||	||	||
||	||654	||SUBROUTINE calc_spectra_x   	||	||	||
||	||801	||SUBROUTINE calc_spectra_y   	||	||	||
||surface_coupler.f90	||	||    	||Siggi	||coding standard	||
||	||91	||SUBROUTINE surface_coupler   	||	||	||
||	||676	||SUBROUTINE interpolate_to_atmos   	||	||	||
||	||765	||SUBROUTINE interpolate_to_ocean   	||	||	||
||swap_timelevel.f90	||	||    	||Sebastian	||!> instead of !<	||
||	||122	||SUBROUTINE swap_timelevel   	||	||	||
||temperton_fft_mod.f90	||	||    	||Siggi	||coding standard, descriptions	||
||	||112	||SUBROUTINE fft991cy   	||	||	||
||	||354	||SUBROUTINE qpassm   	||	||	||
||	||1231	||SUBROUTINE rpassm   	||	||	||
||	||2085	||SUBROUTINE set99   	||	||	||
||time_integration.f90	||	||    	||Sebastian	||	||
||	||340	||SUBROUTINE time_integration   	||	||	||
||time_integration_spinup.f90	||	||    	||Sebastian	||	||
||	||88	||SUBROUTINE time_integration_spinup   	||	||	||
||	||581	||FUNCTION solar_angle   	||	||	||
||timestep.f90	||	||    	||Siggi	||	||
||	||112	||SUBROUTINE timestep   	||	||	||
||time_to_string.f90	||	||    	||Simon	||move function to module, USE, coding standard	||
||	||62	||FUNCTION time_to_string   	||	||	||
||transpose.f90	||	||    	||Siggi	||coding standard	||
||	||93	||SUBROUTINE resort_for_xy   	||	||	||
||	||137	||SUBROUTINE transpose_xy   	||	||	||
||	||222	||SUBROUTINE resort_for_xz   	||	||	||
||	||264	||SUBROUTINE transpose_xz   	||	||	||
||	||352	||SUBROUTINE resort_for_yx   	||	||	||
||	||396	||SUBROUTINE transpose_yx   	||	||	||
||	||484	||SUBROUTINE transpose_yxd   	||	||	||
||	||561	||SUBROUTINE resort_for_yz   	||	||	||
||	||605	||SUBROUTINE transpose_yz   	||	||	||
||	||691	||SUBROUTINE resort_for_zx   	||	||	||
||	||732	||SUBROUTINE transpose_zx   	||	||	||
||	||818	||SUBROUTINE resort_for_zy   	||	||	||
||	||863	||SUBROUTINE transpose_zy   	||	||	||
||	||952	||SUBROUTINE transpose_zyd   	||	||	||
||tridia_solver_mod.f90	||	||    	||Siggi	||	||
||	||105	||MODULE tridia_solver   	||	||	||
||	||140	||SUBROUTINE tridia_init   	||	||	||
||	||179	||SUBROUTINE maketri   	||	||	||
||	||272	||SUBROUTINE tridia_substi   	||	||	||
||	||348	||SUBROUTINE tridia_substi_overlap   	||	||	||
||	||425	||SUBROUTINE split   	||	||	||
||	||472	||SUBROUTINE tridia_1dd   	||	||	||
||	||533	||SUBROUTINE maketri_1dd   	||	||	||
||	||600	||SUBROUTINE split_1dd   	||	||	||
||	||628	||SUBROUTINE substi_1dd   	||	||	||
||urban_surface_mod.f90	||	||    	||Farah → others	||	||
||	||274	||MODULE urban_surface_mod   	||	||	||
||	||814	||SUBROUTINE usm_allocate_surface   	||	||	||
||	||1202	||SUBROUTINE usm_average_3d_data   	||	||	||
||	||2247	||SUBROUTINE usm_check_data_output   	||	||	||
||	||2348	||SUBROUTINE usm_data_output_3d   	||	||	||
||	||3332	||SUBROUTINE usm_define_netcdf_grid   	||	||	||
||	||3516	||SUBROUTINE usm_init_urban_surface   	||	||	||
||	||5324	||SUBROUTINE usm_read_anthropogenic_heat   	||	||	||
||	||5410	||SUBROUTINE usm_rrd_local   	||	||	||
||	||6590	||SUBROUTINE usm_read_urban_surface_types   	||	||	||
||	||7068	||PURE FUNCTION advance_surface  	||	||	||
||	||7099	||SUBROUTINE usm_read_wall_temperature   	||	||	||
||	||7661	||SUBROUTINE usm_swap_timelevel   	||	||	||
||user_3d_data_averaging.f90	||	||    	||Simon	||	||
||	||67	||SUBROUTINE user_3d_data_averaging   	||	||	||
||user_actions.f90	||	||    	||Simon	||	||
||	||99	||SUBROUTINE user_actions   	||	||	||
||	||206	||SUBROUTINE user_actions_ij   	||	||	||
||user_check_data_output.f90	||	||    	||Simon	||	||
||	||60	||SUBROUTINE user_check_data_output   	||	||	||
||user_check_data_output_pr.f90	||	||    	||Simon	||	||
||	||63	||SUBROUTINE user_check_data_output_pr   	||	||	||
||user_data_output_2d.f90	||	||    	||Simon	||	||
||	||76	||SUBROUTINE user_data_output_2d   	||	||	||
||user_data_output_3d.f90	||	||    	||Simon	||	||
||	||71	||SUBROUTINE user_data_output_3d   	||	||	||
||user_data_output_mask.f90	||	||    	||Simon	||	||
||	||55	||SUBROUTINE user_data_output_mask   	||	||	||
||user_define_netcdf_grid.f90	||	||    	||Simon	||	||
||	||59	||SUBROUTINE user_define_netcdf_grid   	||	||	||
||user_header.f90	||	||    	||Simon	||	||
||	||63	||SUBROUTINE user_header   	||	||	||
||user_init.f90	||	||    	||Simon	||	||
||	||64	||SUBROUTINE user_init   	||	||	||
||user_lpm_init.f90	||	||    	||Simon	||	||
||	||66	||SUBROUTINE user_lpm_init   	||	||	||
||user_lpm_set_attributes.f90	||	||    	||Simon	||	||
||	||63	||SUBROUTINE user_lpm_set_attributes   	||	||	||
||user_module.f90	||	||    	||Simon	||	||
||	||71	||MODULE user   	||	||	||
||user_parin.f90	||	||    	||Simon	||	||
||	||86	||SUBROUTINE user_parin   	||	||	||
||user_read_restart_data_mod.f90	||	||    	||Simon	||	||
||	||63	||SUBROUTINE user_rrd_global   	||	||	||
||	||102	||SUBROUTINE user_rrd_local   	||	||	||
||user_spectra.f90	||	||    	||Simon	||	||
||	||66	||SUBROUTINE user_spectra   	||	||	||
||user_statistics.f90	||	||    	||Simon	||	||
||	||78	||SUBROUTINE user_statistics   	||	||	||
||uv_exposure_model_mod.f90	||	||    	||Michael	||hard coding necessary?	||
||	||68	||MODULE uv_exposure_model_mod   	||	||	||
||	||256	||SUBROUTINE uvem_check_data_output   	||	||	||
||	||315	||SUBROUTINE uvem_data_output_2d   	||	||	||
||	||395	||SUBROUTINE uvem_define_netcdf_grid   	||	||	||
||	||477	||SUBROUTINE uvem_3d_data_averaging   	||	||	||
||vertical_nesting_mod.f90	||	||    	||Farah → SadiqHuq	||	||
||	||78	||MODULE vertical_nesting_mod   	||	||	||
||	||221	||SUBROUTINE vnest_init_fine   	||	||	||
||	||629	||SUBROUTINE interpolate_to_fine_w   	||	||	||
||	||761	||SUBROUTINE interpolate_to_fine_u   	||	||	||
||	||907	||SUBROUTINE interpolate_to_fine_v   	||	||	||
||	||1051	||SUBROUTINE interpolate_to_fine_s   	||	||	||
||	||1201	||SUBROUTINE interpolate_to_fine_kh   	||	||	||
||	||1369	||SUBROUTINE interpolate_to_fine_km   	||	||	||
||	||1539	||SUBROUTINE interpolate_to_fine_flux   	||	||	||
||	||1675	||SUBROUTINE vnest_boundary_conds   	||	||	||
||	||1839	||SUBROUTINE vnest_set_topbc_w   	||	||	||
||	||1941	||SUBROUTINE vnest_set_topbc_u   	||	||	||
||	||2041	||SUBROUTINE vnest_set_topbc_v   	||	||	||
||	||2150	||SUBROUTINE vnest_set_topbc_s   	||	||	||
||	||2291	||SUBROUTINE vnest_boundary_conds_khkm   	||	||	||
||	||2442	||SUBROUTINE vnest_set_topbc_kh   	||	||	||
||	||2580	||SUBROUTINE vnest_set_topbc_km   	||	||	||
||	||2725	||SUBROUTINE vnest_anterpolate   	||	||	||
||	||2998	||SUBROUTINE anterpolate_to_crse_u   	||	||	||
||	||3068	||SUBROUTINE anterpolate_to_crse_v   	||	||	||
||	||3137	||SUBROUTINE anterpolate_to_crse_w   	||	||	||
||	||3206	||SUBROUTINE anterpolate_to_crse_s   	||	||	||
||	||3280	||SUBROUTINE vnest_anterpolate_e   	||	||	||
||	||3438	||SUBROUTINE anterpolate_to_crse_e   	||	||	||
||	||3537	||SUBROUTINE vnest_init_pegrid_rank   	||	||	||
||	||3631	||SUBROUTINE vnest_init_pegrid_domain   	||	||	||
||wind_turbine_model_mod.f90	||	||    	||Sebastian	||	||
||	||143	||MODULE wind_turbine_model_mod   	||	||	||
||	||479	||SUBROUTINE wtm_parin   	||	||	||
||	||627	||SUBROUTINE wtm_rrd_global   	||	||	||
||	||717	||SUBROUTINE wtm_init_arrays   	||	||	||
||	||933	||SUBROUTINE wtm_init   	||	||	||
||	||1316	||SUBROUTINE wtm_read_blade_tables   	||	||	||
||	||1565	||SUBROUTINE wtm_rotate_rotor   	||	||	||
||	||1630	||SUBROUTINE wtm_forces   	||	||	||
||	||2490	||SUBROUTINE wtm_yawcontrol   	||	||	||
||	||2633	||SUBROUTINE wtm_speed_control   	||	||	||
||write_restart_data_mod.f90	||	||    	||Sebastian	||	||
||	||86	||SUBROUTINE wrd_global   	||	||	||
||	||948	||SUBROUTINE wrd_local   	||	||	||