= PALM Program control =
How to set up and run the model, how to process and interpret model output....

== Model setup ==
* '''[wiki:doc/app/par Control parameters]'''
   * [wiki:doc/app/inipar     Initialization]
   * [wiki:doc/app/d3par      Runtime]
\\
   * Optional parameter packages
      * [wiki:doc/app/dvrpar     dvr graphics output]
      * [wiki:doc/app/parpar     Lagrangian particle model]
      * [wiki:doc/app/lsmpar     Land surface model]
      * [wiki:doc/app/nestpar    Nesting]
      * [wiki:doc/app/canpar     Plant canopy model]
      * [wiki:doc/app/radpar     Radiation model]
      * [wiki:doc/app/sppar      Spectra output]
      * [wiki:doc/app/flpar      Virtual flight model]
      * [wiki:doc/app/wind_turbine_par     Wind turbine model]
   * [wiki:doc/app/parlist    '''Alphabetical list of all parameters''']


== Model operation ==
* Launching a simulation (mrun, mrungui, example of minimum configuration file, Interactive mode and debugging)
* Monitoring a simulation (Monitoring batch jobs: PALM watchdog)
* Simulation chains (Initialization and restart runs)
\\
* Debugging

== User code ==
* [wiki:doc/app/userint/int     Available interfaces to PALM core]
* [wiki:doc/app/userint/comp    Compiling and linking of user code]
* [wiki:doc/app/userpar         User-defined control parameters (Definition of user-defined parameters)]
* [wiki:doc/app/userint/subd    User-defined domains (should be specified, no one can imagine what this means)]
* [wiki:doc/app/userint/output  User-defined data output]




= PALM Data I/O and visualization =
(to be resorted!!)
* '''[wiki:doc/app/iofiles Input/Output files]'''

* '''[wiki:doc/app/netcdf  netCDF data output]'''
   * [wiki:doc/app/ncgen Generation of a PALM netCDF file]
   * [wiki:doc/app/ncexample Example of a PALM netCDF data set]
   * [wiki:doc/app/maskedoutput Masked data output]
* '''[wiki:doc/app/ncl  Postprocessing with NCL]'''
   * [wiki:doc/app/nclparlist  List of parameters for PALM NCL scripts]
* [wiki:doc/app/idl Postprocessing with IDL]
* [wiki:doc/app/dvr Visualization with dvr]
* [wiki:doc/app/vapor Visualization with VAPOR]
* [wiki:doc/app/img2video Creating animations with img2video]
* [wiki:doc/app/img2stereo Creating stereo images with img2stereo]







= [wiki:doc/app/examples Simulation examples] =
!!!needs special care!!!
      * [wiki:doc/app/examples/cbl      Minimum set for simulating the CBL]
      * [wiki:doc/app/examples/topo     Topography]
      * [wiki:doc/app/examples/turbinf  Turbulent inflow]
      * [wiki:doc/app/examples/ocean    Ocean runs]
      * [wiki:doc/app/examples/coupled  Coupled atmosphere-ocean runs]
      * [wiki:doc/app/examples/lsf  Runs with large scale forcing and nudging]
      * [wiki:doc/app/examples/rrtmg  Run with land surface model and coupled to the RRTMG radiation model]