# # ChangeLog for palm/trunk/SCRIPTS/palmrun # # Generated by Trac 1.0.5 # Nov 5, 2024 2:36:23 AM Sun, 17 May 2020 17:24:13 GMT raasch [4536] * palm/trunk/SCRIPTS/palmrun (modified) * palm/trunk/SOURCE/check_parameters.f90 (modified) * palm/trunk/SOURCE/cpulog_mod.f90 (modified) * palm/trunk/SOURCE/header.f90 (modified) * palm/trunk/SOURCE/message.f90 (modified) * palm/trunk/SOURCE/modules.f90 (modified) * palm/trunk/SOURCE/parin.f90 (modified) * palm/trunk/SOURCE/read_restart_data_mod.f90 (modified) * palm/trunk/SOURCE/restart_data_mpi_io_mod.f90 (modified) * palm/trunk/SOURCE/shared_memory_io_mod.f90 (modified) * palm/trunk/SOURCE/virtual_measurement_mod.f90 (modified) * palm/trunk/SOURCE/write_restart_data_mod.f90 (modified) messages and debug output converted to PALM routines ... Tue, 31 Mar 2020 18:55:54 GMT maronga [4481] * palm/trunk/INSTALL/palm_installer_components (modified) * palm/trunk/LIB/rrtmg/Makefile (modified) * palm/trunk/LIB/rrtmg/Makefile_static (modified) * palm/trunk/LIB/rrtmg/install_rrtmg (modified) * palm/trunk/SCRIPTS/.csd.config.default (modified) * palm/trunk/SCRIPTS/batch_scp (modified) * palm/trunk/SCRIPTS/compile_tutorial (modified) * palm/trunk/SCRIPTS/document_changes (modified) * palm/trunk/SCRIPTS/generate_documentation (modified) * palm/trunk/SCRIPTS/inifor_script (modified) * palm/trunk/SCRIPTS/palm_csd (modified) * palm/trunk/SCRIPTS/palm_csd_files/palm_csd_canopy_generator.py (modified) * palm/trunk/SCRIPTS/palm_csd_files/palm_csd_netcdf_interface.py (modified) * palm/trunk/SCRIPTS/palm_csd_files/palm_csd_tools.py (modified) * palm/trunk/SCRIPTS/palm_find_lowest_available_error_number (modified) * palm/trunk/SCRIPTS/palm_find_lowest_available_log_point_index (modified) * palm/trunk/SCRIPTS/palm_gf (modified) * palm/trunk/SCRIPTS/palm_gf_files/palm_gf_tools.py (modified) * palm/trunk/SCRIPTS/palm_simple_build (modified) * palm/trunk/SCRIPTS/palm_simple_run (modified) * palm/trunk/SCRIPTS/palm_wd (modified) * palm/trunk/SCRIPTS/palm_wdd (modified) * palm/trunk/SCRIPTS/palmbuild (modified) * palm/trunk/SCRIPTS/palmplot (modified) * palm/trunk/SCRIPTS/palmrun (modified) * palm/trunk/SCRIPTS/palmrungui (modified) * palm/trunk/SCRIPTS/process_dvr_output (modified) * palm/trunk/SCRIPTS/release_tutorial (modified) * palm/trunk/SOURCE/Makefile (modified) * palm/trunk/SOURCE/biometeorology_mod.f90 (modified) * palm/trunk/SOURCE/chem_emissions_mod.f90 (modified) * palm/trunk/SOURCE/chem_modules.f90 (modified) * palm/trunk/SOURCE/chem_photolysis_mod.f90 (modified) * palm/trunk/SOURCE/chemistry_model_mod.f90 (modified) * palm/trunk/SOURCE/data_output_binary_module.f90 (modified) * palm/trunk/SOURCE/data_output_module.f90 (modified) * palm/trunk/SOURCE/data_output_netcdf4_module.f90 (modified) * palm/trunk/SOURCE/indoor_model_mod.f90 (modified) * palm/trunk/SOURCE/init_vertical_profiles.f90 (modified) * palm/trunk/SOURCE/multi_agent_system_mod.f90 (modified) * palm/trunk/SOURCE/ocean_mod.f90 (modified) * palm/trunk/SOURCE/radiation_model_mod.f90 (modified) * palm/trunk/SOURCE/salsa_mod.f90 (modified) * palm/trunk/SOURCE/synthetic_turbulence_generator_mod.f90 (modified) * palm/trunk/SOURCE/turbulence_closure_mod.f90 (modified) * palm/trunk/SOURCE/urban_surface_mod.f90 (modified) * palm/trunk/SOURCE/user_init_urban_surface.f90 (modified) * palm/trunk/SOURCE/vdi_internal_controls.f90 (modified) * palm/trunk/SOURCE/vertical_nesting_mod.f90 (modified) * palm/trunk/SOURCE/virtual_measurement_mod.f90 (modified) * palm/trunk/SOURCE/wind_turbine_model_mod.f90 (modified) * palm/trunk/UTIL/Makefile (modified) * palm/trunk/UTIL/Makefile_utilities (modified) * palm/trunk/UTIL/analyze_particle_data.f90 (modified) * palm/trunk/UTIL/analyze_particle_netcdf_data.f90 (modified) * palm/trunk/UTIL/binary_to_netcdf.f90 (modified) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/gpl/gpl.txt (modified) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/src/code.c (modified) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/src/code.h (modified) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/src/code_c.c (modified) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/src/code_f77.c (modified) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/src/code_f90.c (modified) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/src/code_matlab.c (modified) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/src/copyright (modified) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/src/debug.c (modified) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/src/gdata.h (modified) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/src/gdef.h (modified) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/src/gen.c (modified) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/src/kpp.c (modified) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/src/scan.h (modified) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/src/scan.l (modified) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/src/scan.y (modified) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/src/scanner.c (modified) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/src/scanutil.c (modified) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/bin/kpp4palm.sh (modified) * palm/trunk/UTIL/chemistry/gasphase_preproc/run_kpp4palm.sh (modified) * palm/trunk/UTIL/combine_plot_fields.f90 (modified) * palm/trunk/UTIL/combine_plot_fields_single_open.f90 (modified) * palm/trunk/UTIL/compare_palm_logs.f90 (modified) * palm/trunk/UTIL/inifor/Makefile (modified) * palm/trunk/UTIL/inifor/Makefile.gnu (modified) * palm/trunk/UTIL/inifor/Makefile.ifort (modified) * palm/trunk/UTIL/inifor/src/Makefile (modified) * palm/trunk/UTIL/inifor/src/inifor.f90 (modified) * palm/trunk/UTIL/inifor/src/inifor_control.f90 (modified) * palm/trunk/UTIL/inifor/src/inifor_defs.f90 (modified) * palm/trunk/UTIL/inifor/src/inifor_grid.f90 (modified) * palm/trunk/UTIL/inifor/src/inifor_io.f90 (modified) * palm/trunk/UTIL/inifor/src/inifor_transform.f90 (modified) * palm/trunk/UTIL/inifor/src/inifor_types.f90 (modified) * palm/trunk/UTIL/inifor/src/inifor_util.f90 (modified) * palm/trunk/UTIL/inifor/tests/Makefile (modified) * palm/trunk/UTIL/inifor/tests/Makefile.gnu (modified) * palm/trunk/UTIL/inifor/tests/Makefile.ifort (modified) * palm/trunk/UTIL/inifor/tests/test-boundaries.f90 (modified) * palm/trunk/UTIL/inifor/tests/test-centre-velocities.f90 (modified) * palm/trunk/UTIL/inifor/tests/test-grid.f90 (modified) * palm/trunk/UTIL/inifor/tests/test-input-files.f90 (modified) * palm/trunk/UTIL/inifor/tests/test-interpolation.f90 (modified) * palm/trunk/UTIL/inifor/tests/test-prototype.f90 (modified) * palm/trunk/UTIL/inifor/tests/test-stretching.f90 (modified) * palm/trunk/UTIL/inifor/tests/test-transform.f90 (modified) * palm/trunk/UTIL/inifor/tests/util.f90 (modified) * palm/trunk/UTIL/read_palm_netcdf_data.f90 (modified) * palm/trunk/UTIL/read_prt_data.f90 (modified) * palm/trunk/UTIL/surface_output_processing/surface_output_to_vtk.f90 (modified) Bugfix for copyright updates in document_changes; copyright update ... Thu, 05 Mar 2020 15:31:21 GMT raasch [4443] * palm/trunk/SCRIPTS/batch_scp (modified) * palm/trunk/SCRIPTS/palmrun (modified) add cycle number to initial files too (000), remove compatibility for ... Wed, 26 Feb 2020 15:35:00 GMT raasch [4425] * palm/trunk/SCRIPTS/palmrun (modified) hard coded path to the fileconnection file replaced by a path that is ... Mon, 25 Nov 2019 08:55:18 GMT raasch [4303] * palm/trunk/SCRIPTS/palmbuild (modified) * palm/trunk/SCRIPTS/palmrun (modified) Abort if temporary working catalog / SOURCES_FOR_RUN catalog cannot ... Thu, 16 May 2019 11:07:31 GMT raasch [3982] * palm/trunk/SCRIPTS/palmrun (modified) bugfix: -b is not added in automatically generated batch jobs for ... Thu, 18 Apr 2019 11:46:37 GMT raasch [3917] * palm/trunk/SCRIPTS/palmrun (modified) in case of batch jobs on remote machines, copying files from ... Thu, 04 Apr 2019 06:23:27 GMT raasch [3860] * palm/trunk/SCRIPTS/palmrun (modified) check added, that it is not allowed to set option -b if the ... Thu, 07 Feb 2019 10:11:02 GMT raasch [3725] * palm/trunk/SCRIPTS/palmbuild (modified) * palm/trunk/SCRIPTS/palmrun (modified) * palm/trunk/SOURCE/buoyancy.f90 (modified) * palm/trunk/SOURCE/data_log.f90 (modified) * palm/trunk/SOURCE/gust_mod.f90 (modified) * palm/trunk/SOURCE/poismg_mod.f90 (modified) * palm/trunk/SOURCE/temperton_fft_mod.f90 (modified) * palm/trunk/SOURCE/wind_turbine_model_mod.f90 (modified) modifications to avoid compiler warnings about unused variables, ... Fri, 18 Jan 2019 17:01:54 GMT knoop [3682] * palm/trunk/SCRIPTS/.palm.config.default.in (modified) * palm/trunk/SCRIPTS/palmrun (modified) * palm/trunk/SCRIPTS/palmtest (modified) Extended palmtest to use custom MPI execution commands Thu, 10 Jan 2019 08:28:24 GMT raasch [3665] * palm/trunk/SCRIPTS/document_changes (modified) * palm/trunk/SCRIPTS/palmrun (modified) * palm/trunk/SOURCE/advec_s_pw.f90 (modified) * palm/trunk/SOURCE/advec_s_up.f90 (modified) * palm/trunk/SOURCE/data_output_mask.f90 (modified) * palm/trunk/SOURCE/date_and_time_mod.f90 (modified) * palm/trunk/SOURCE/gust_mod.f90 (modified) * palm/trunk/SOURCE/init_masks.f90 (modified) * palm/trunk/SOURCE/multi_agent_system_mod.f90 (modified) * palm/trunk/SOURCE/netcdf_interface_mod.f90 (modified) * palm/trunk/SOURCE/virtual_measurement_mod.f90 (modified) * palm/trunk/UTIL/agent_preprocessing/agent_preprocessing.f90 (modified) dummy statements added to avoid compiler warnings about unused ... Wed, 28 Nov 2018 13:14:39 GMT raasch [3574] * palm/trunk/SCRIPTS/palmrun (modified) syntax-error in last commit fixed Wed, 28 Nov 2018 13:03:44 GMT raasch [3573] * palm/trunk/SCRIPTS/palmrun (modified) bugfixes: don't check the .palm.iofiles in restart runs + wrong cd- ... Tue, 27 Nov 2018 17:44:21 GMT kanani [3570] * palm/trunk/SCRIPTS/palmrun (modified) * palm/trunk/SOURCE/chem_emissions_mod.f90 (modified) * palm/trunk/SOURCE/chemistry_model_mod.f90 (modified) Fix too long lines (chemistry_model_mod, chem_emissions_mod), correct ... Thu, 22 Nov 2018 13:50:37 GMT raasch [3555] * palm/trunk/SCRIPTS/palmrun (modified) sed-command to remove repeated space-characters replaced by tr- ... Wed, 21 Nov 2018 15:44:44 GMT raasch [3549] * palm/trunk/SCRIPTS/batch_scp (modified) * palm/trunk/SCRIPTS/palmbuild (modified) * palm/trunk/SCRIPTS/palmrun (modified) ssh-call for submitting batch jobs on remote systems modified to ... Mon, 19 Nov 2018 15:35:16 GMT raasch [3534] * palm/trunk/SCRIPTS (modified) * palm/trunk/SCRIPTS/palmbuild (modified) * palm/trunk/SCRIPTS/palmrun (modified) * palm/trunk/SOURCE/poismg_mod.f90 (modified) * palm/trunk/UTIL/Makefile_utilities (modified) * palm/trunk/UTIL/inifor/src/inifor_defs.f90 (modified) * palm/trunk/UTIL/inifor/src/inifor_io.f90 (modified) * palm/trunk/UTIL/inifor/src/inifor_transform.f90 (modified) inifor integrated in build mechanism, some bugfixes in inifor to ... Thu, 08 Nov 2018 09:14:30 GMT raasch [3505] * palm/trunk/SCRIPTS/palmrun (modified) job folders are created in case that they do not exist Tue, 30 Oct 2018 14:12:31 GMT raasch [3455] * palm/trunk/SCRIPTS/.palm.config.crayh (modified) * palm/trunk/SCRIPTS/.palm.config.default (modified) * palm/trunk/SCRIPTS/.palm.config.default.in (modified) * palm/trunk/SCRIPTS/.palm.config.default_trace (modified) * palm/trunk/SCRIPTS/.palm.config.idefix (modified) * palm/trunk/SCRIPTS/palmbuild (modified) * palm/trunk/SCRIPTS/palmrun (modified) options -h and -d renamed -c and -r, respectively, job_queue renamed ... Tue, 23 Oct 2018 11:49:24 GMT knoop [3402] * palm/trunk/SCRIPTS/palmrun (modified) palmrun: added output filter for "1" in batch mode Mon, 22 Oct 2018 16:22:55 GMT knoop [3393] * palm/trunk/SCRIPTS/.palm.iofiles (modified) * palm/trunk/SCRIPTS/palmrun (modified) palmrun: added _stdout monitoring file and output filter for "STOP 1" ... Mon, 15 Oct 2018 12:28:43 GMT raasch [3346] * palm/trunk/SCRIPTS/.palm.config.crayh (modified) * palm/trunk/SCRIPTS/.palm.config.eddy_gfort (modified) * palm/trunk/SCRIPTS/.palm.config.eddy_ifort (modified) * palm/trunk/SCRIPTS/.palm.config.idefix (modified) * palm/trunk/SCRIPTS/palmrun (modified) job_id renamed run_id in configuration files, job_id is set for ... Sat, 06 Oct 2018 15:22:48 GMT knoop [3313] * palm/trunk/SCRIPTS/palmrun (modified) * palm/trunk/SOURCE/parin.f90 (modified) * palm/trunk/SOURCE/progress_bar_mod.f90 (modified) Added test mode to palmrun Sat, 06 Oct 2018 14:15:46 GMT knoop [3312] * palm/trunk/SCRIPTS/palmbuild (modified) * palm/trunk/SCRIPTS/palmrun (modified) * palm/trunk/SOURCE/check_parameters.f90 (modified) * palm/trunk/SOURCE/chem_emissions_mod.f90 (modified) * palm/trunk/SOURCE/local_stop.f90 (modified) Added proper exit code to PALM and fixed exit code handling by ... Mon, 01 Oct 2018 02:37:10 GMT raasch [3294] * palm/trunk/INSTALL/test_oceanml_p3d (modified) * palm/trunk/INSTALL/test_oceanml_rc (modified) * palm/trunk/SCRIPTS/palmrun (modified) * palm/trunk/SOURCE/Makefile (modified) * palm/trunk/SOURCE/advec_ws.f90 (modified) * palm/trunk/SOURCE/average_3d_data.f90 (modified) * palm/trunk/SOURCE/boundary_conds.f90 (modified) * palm/trunk/SOURCE/buoyancy.f90 (modified) * palm/trunk/SOURCE/check_parameters.f90 (modified) * palm/trunk/SOURCE/data_output_2d.f90 (modified) * palm/trunk/SOURCE/data_output_3d.f90 (modified) * palm/trunk/SOURCE/eqn_state_seawater.f90 (deleted) * palm/trunk/SOURCE/flow_statistics.f90 (modified) * palm/trunk/SOURCE/header.f90 (modified) * palm/trunk/SOURCE/init_3d_model.f90 (modified) * palm/trunk/SOURCE/init_grid.f90 (modified) * palm/trunk/SOURCE/init_masks.f90 (modified) * palm/trunk/SOURCE/init_ocean.f90 (deleted) * palm/trunk/SOURCE/init_vertical_profiles.f90 (added) * palm/trunk/SOURCE/large_scale_forcing_nudging_mod.f90 (modified) * palm/trunk/SOURCE/lpm_init.f90 (modified) * palm/trunk/SOURCE/modules.f90 (modified) * palm/trunk/SOURCE/netcdf_interface_mod.f90 (modified) * palm/trunk/SOURCE/ocean_mod.f90 (added) * palm/trunk/SOURCE/parin.f90 (modified) * palm/trunk/SOURCE/plant_canopy_model_mod.f90 (modified) * palm/trunk/SOURCE/prognostic_equations.f90 (modified) * palm/trunk/SOURCE/read_restart_data_mod.f90 (modified) * palm/trunk/SOURCE/subsidence_mod.f90 (modified) * palm/trunk/SOURCE/sum_up_3d_data.f90 (modified) * palm/trunk/SOURCE/surface_mod.f90 (modified) * palm/trunk/SOURCE/swap_timelevel.f90 (modified) * palm/trunk/SOURCE/time_integration.f90 (modified) * palm/trunk/SOURCE/turbulence_closure_mod.f90 (modified) * palm/trunk/SOURCE/write_restart_data_mod.f90 (modified) modularization of the ocean code Mon, 10 Sep 2018 09:07:06 GMT raasch [3236] * palm/trunk/SCRIPTS/.palm.config.crayh (modified) * palm/trunk/SCRIPTS/.palm.config.default (modified) * palm/trunk/SCRIPTS/.palm.config.default.in (modified) * palm/trunk/SCRIPTS/.palm.config.default_trace (modified) * palm/trunk/SCRIPTS/.palm.config.eddy_gfort (modified) * palm/trunk/SCRIPTS/.palm.config.eddy_ifort (modified) * palm/trunk/SCRIPTS/.palm.config.idefix (modified) * palm/trunk/SCRIPTS/.palm.config.imuk (modified) * palm/trunk/SCRIPTS/.palm.iofiles (modified) * palm/trunk/SCRIPTS/palmbuild (modified) * palm/trunk/SCRIPTS/palmrun (modified) host identifier in header output renamed config. identifier, ... Thu, 19 Jul 2018 08:45:38 GMT raasch [3151] * palm/trunk/SCRIPTS/.palm.config.default (modified) * palm/trunk/SCRIPTS/.palm.config.default.in (modified) * palm/trunk/SCRIPTS/.palm.config.eddy_gfort (modified) * palm/trunk/SCRIPTS/.palm.config.imuk (modified) * palm/trunk/SCRIPTS/palmrun (modified) * palm/trunk/SOURCE/sum_up_3d_data.f90 (modified) * palm/trunk/SOURCE/urban_surface_mod.f90 (modified) output of PALM code revision number in palmrun header, some ... Mon, 16 Jul 2018 11:44:58 GMT raasch [3132] * palm/trunk/SCRIPTS/palmrun (modified) create consistent error messages in case of failed restarts, check ... Fri, 25 May 2018 10:47:54 GMT raasch [3043] * palm/trunk/SCRIPTS/.palm.config.default (modified) * palm/trunk/SCRIPTS/palmrun (modified) check for setting of fast_io_catalog, update of default ... Wed, 23 May 2018 15:26:19 GMT raasch [3033] * palm/trunk/SCRIPTS/palmbuild (modified) * palm/trunk/SCRIPTS/palmrun (modified) keyword correction Wed, 23 May 2018 15:22:52 GMT raasch [3032] * palm/trunk/SCRIPTS/palmrun (modified) keyword correction Tue, 22 May 2018 10:20:58 GMT raasch [3025] * palm/trunk/SCRIPTS/.palm.iofiles (modified) * palm/trunk/SCRIPTS/palmrun (modified) -T option not required for interactive runs (tasks per node = total ... Thu, 19 Apr 2018 11:24:09 GMT raasch [2993] * palm/trunk/SCRIPTS/palmrun (modified) bugfix of r2990 Thu, 19 Apr 2018 07:24:14 GMT raasch [2990] * palm/trunk/SCRIPTS/palmrun (modified) bugfix: temporary SOURCES_FOR_RUN_CATALOG now created in ... Wed, 11 Apr 2018 08:48:06 GMT Giersch [2957] * palm/trunk/SCRIPTS/palmrun (modified) * palm/trunk/SOURCE/check_open.f90 (modified) Sky view factors will always be read from file now in case of ... Mon, 19 Mar 2018 08:56:40 GMT Giersch [2906] * palm/trunk/SCRIPTS/.palm.iofiles (modified) * palm/trunk/SCRIPTS/palmrun (modified) * palm/trunk/SOURCE/check_open.f90 (modified) * palm/trunk/SOURCE/init_3d_model.f90 (modified) * palm/trunk/SOURCE/modules.f90 (modified) * palm/trunk/SOURCE/parin.f90 (modified) * palm/trunk/SOURCE/radiation_model_mod.f90 (modified) * palm/trunk/SOURCE/urban_surface_mod.f90 (modified) new procedure for reading/writing svf data, initialization of local ... Fri, 23 Feb 2018 14:04:07 GMT raasch [2834] * palm/trunk/SCRIPTS/.palm.config.crayh (modified) * palm/trunk/SCRIPTS/.palm.config.default (modified) * palm/trunk/SCRIPTS/.palm.config.default.in (modified) * palm/trunk/SCRIPTS/.palm.config.idefix (modified) * palm/trunk/SCRIPTS/.palm.config.imuk (modified) * palm/trunk/SCRIPTS/.palm.iofiles (modified) * palm/trunk/SCRIPTS/palmbuild (modified) * palm/trunk/SCRIPTS/palmrun (modified) fname renamed jobname Mon, 12 Feb 2018 08:24:05 GMT raasch [2799] * palm/trunk/SCRIPTS/palmrun (modified) parameters are allowed in output commands (OC:) Tue, 06 Feb 2018 07:32:11 GMT raasch [2789] * palm/trunk/SCRIPTS/palmrun (modified) bugfix: exit if no queue has been given neither with option -q nor in ... Thu, 18 Jan 2018 16:36:20 GMT raasch [2762] * palm/trunk/SCRIPTS/palmrun (modified) file connection file is taken by default from trunk/SCRIPTS Wed, 10 Jan 2018 09:04:32 GMT raasch [2732] * palm/trunk/SCRIPTS/palmbuild (modified) * palm/trunk/SCRIPTS/palmrun (modified) bugfix: keyword Rev set for scrpts palmrun and palmbuild Tue, 02 Jan 2018 08:49:38 GMT maronga [2718] * palm/trunk/DOC (deleted) * palm/trunk/LIB/rrtmg/Makefile (modified) * palm/trunk/LIB/rrtmg/Makefile_static (modified) * palm/trunk/LIB/rrtmg/install_rrtmg (modified) * palm/trunk/SCRIPTS/batch_scp (modified) * palm/trunk/SCRIPTS/compile_tutorial (modified) * palm/trunk/SCRIPTS/document_changes (modified) * palm/trunk/SCRIPTS/generate_documentation (modified) * palm/trunk/SCRIPTS/img2stereo (deleted) * palm/trunk/SCRIPTS/img2video (deleted) * palm/trunk/SCRIPTS/imuk_wm_black.png (deleted) * palm/trunk/SCRIPTS/imuk_wm_white.png (deleted) * palm/trunk/SCRIPTS/palm2doxgen.config (copied) * palm/trunk/SCRIPTS/palm_gf (modified) * palm/trunk/SCRIPTS/palm_jm (modified) * palm/trunk/SCRIPTS/palm_simple_install (modified) * palm/trunk/SCRIPTS/palm_simple_run (modified) * palm/trunk/SCRIPTS/palm_wd (modified) * palm/trunk/SCRIPTS/palm_wdd (modified) * palm/trunk/SCRIPTS/palmbuild (modified) * palm/trunk/SCRIPTS/palmplot (modified) * palm/trunk/SCRIPTS/palmrun (modified) * palm/trunk/SCRIPTS/palmrungui (moved) * palm/trunk/SCRIPTS/palmtest (modified) * palm/trunk/SCRIPTS/process_dvr_output (modified) * palm/trunk/SCRIPTS/release_tutorial (modified) * palm/trunk/SCRIPTS/testsuite (modified) * palm/trunk/SOURCE/Makefile (modified) * palm/trunk/SOURCE/advec_s_bc.f90 (modified) * palm/trunk/SOURCE/advec_s_pw.f90 (modified) * palm/trunk/SOURCE/advec_s_up.f90 (modified) * palm/trunk/SOURCE/advec_u_pw.f90 (modified) * palm/trunk/SOURCE/advec_u_up.f90 (modified) * palm/trunk/SOURCE/advec_v_pw.f90 (modified) * palm/trunk/SOURCE/advec_v_up.f90 (modified) * palm/trunk/SOURCE/advec_w_pw.f90 (modified) * palm/trunk/SOURCE/advec_w_up.f90 (modified) * palm/trunk/SOURCE/advec_ws.f90 (modified) * palm/trunk/SOURCE/average_3d_data.f90 (modified) * palm/trunk/SOURCE/boundary_conds.f90 (modified) * palm/trunk/SOURCE/buoyancy.f90 (modified) * palm/trunk/SOURCE/calc_liquid_water_content.f90 (modified) * palm/trunk/SOURCE/calc_mean_profile.f90 (modified) * palm/trunk/SOURCE/calc_radiation.f90 (modified) * palm/trunk/SOURCE/check_for_restart.f90 (modified) * palm/trunk/SOURCE/check_open.f90 (modified) * palm/trunk/SOURCE/check_parameters.f90 (modified) * palm/trunk/SOURCE/chem_gasphase_mod.f90 (modified) * palm/trunk/SOURCE/chem_modules.f90 (modified) * palm/trunk/SOURCE/chem_photolysis_mod.f90 (modified) * palm/trunk/SOURCE/chemistry_model_mod.f90 (modified) * palm/trunk/SOURCE/close_file.f90 (modified) * palm/trunk/SOURCE/compute_vpt.f90 (modified) * palm/trunk/SOURCE/coriolis.f90 (modified) * palm/trunk/SOURCE/cpulog_mod.f90 (modified) * palm/trunk/SOURCE/data_log.f90 (modified) * 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(modified) * palm/trunk/UTIL/read_prt_data.f90 (modified) deleting of deprecated files; headers updated where needed Fri, 29 Dec 2017 16:35:59 GMT kanani [2716] * palm/trunk/SCRIPTS/batch_scp (modified) * palm/trunk/SCRIPTS/compile_tutorial (modified) * palm/trunk/SCRIPTS/document_changes (modified) * palm/trunk/SCRIPTS/generate_documentation (modified) * palm/trunk/SCRIPTS/img2stereo (modified) * palm/trunk/SCRIPTS/img2video (modified) * palm/trunk/SCRIPTS/palm_gf (modified) * palm/trunk/SCRIPTS/palm_jm (modified) * palm/trunk/SCRIPTS/palm_simple_install (modified) * palm/trunk/SCRIPTS/palm_simple_run (modified) * palm/trunk/SCRIPTS/palm_wd (modified) * palm/trunk/SCRIPTS/palm_wdd (modified) * palm/trunk/SCRIPTS/palmbuild (modified) * palm/trunk/SCRIPTS/palmplot (modified) * palm/trunk/SCRIPTS/palmrun (modified) * palm/trunk/SCRIPTS/palmrungui (modified) * palm/trunk/SCRIPTS/palmrungui.py (modified) * palm/trunk/SCRIPTS/palmtest (modified) * palm/trunk/SCRIPTS/process_dvr_output 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palm/trunk/SOURCE/user_flight.f90 (modified) * palm/trunk/SOURCE/user_header.f90 (modified) * palm/trunk/SOURCE/user_init.f90 (modified) * palm/trunk/SOURCE/user_init_3d_model.f90 (modified) * palm/trunk/SOURCE/user_init_flight.f90 (modified) * palm/trunk/SOURCE/user_init_grid.f90 (modified) * palm/trunk/SOURCE/user_init_land_surface.f90 (modified) * palm/trunk/SOURCE/user_init_plant_canopy.f90 (modified) * palm/trunk/SOURCE/user_init_radiation.f90 (modified) * palm/trunk/SOURCE/user_init_urban_surface.f90 (modified) * palm/trunk/SOURCE/user_last_actions.f90 (modified) * palm/trunk/SOURCE/user_lpm_advec.f90 (modified) * palm/trunk/SOURCE/user_lpm_init.f90 (modified) * palm/trunk/SOURCE/user_lpm_set_attributes.f90 (modified) * palm/trunk/SOURCE/user_module.f90 (modified) * palm/trunk/SOURCE/user_parin.f90 (modified) * palm/trunk/SOURCE/user_read_restart_data.f90 (modified) * palm/trunk/SOURCE/user_spectra.f90 (modified) * palm/trunk/SOURCE/user_statistics.f90 (modified) * palm/trunk/SOURCE/vertical_nesting_mod.f90 (modified) * palm/trunk/SOURCE/virtual_flight_mod.f90 (modified) * palm/trunk/SOURCE/wind_turbine_model_mod.f90 (modified) * palm/trunk/SOURCE/write_3d_binary.f90 (modified) * palm/trunk/SOURCE/write_var_list.f90 (modified) * palm/trunk/UTIL/Makefile_utilities (modified) * palm/trunk/UTIL/analyze_particle_data.f90 (modified) * palm/trunk/UTIL/analyze_particle_netcdf_data.f90 (modified) * palm/trunk/UTIL/check_pegrid.f90 (modified) * palm/trunk/UTIL/combine_plot_fields.f90 (modified) * palm/trunk/UTIL/combine_plot_fields_single_open.f90 (modified) * palm/trunk/UTIL/compare_palm_logs.f90 (modified) * palm/trunk/UTIL/find_palm_config.f90 (modified) * palm/trunk/UTIL/interpret_config.f90 (modified) * palm/trunk/UTIL/read_palm_netcdf_data.f90 (modified) * palm/trunk/UTIL/read_prt_data.f90 (modified) Correction of "Former revisions" section Thu, 14 Dec 2017 17:12:51 GMT kanani [2696] * palm/trunk (modified) * palm/trunk/INSTALL/ex_lsm_clearsky_rc 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palm/trunk/UTIL/analyze_particle_netcdf_data.f90 (modified) * palm/trunk/UTIL/check_pegrid.f90 (modified) * palm/trunk/UTIL/chemistry (added) * palm/trunk/UTIL/chemistry/gasphase_preproc (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/Readme_KPP4PALM.odt (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/Makefile (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/Makefile.defs (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/bin (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/bin/kpp (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/cflags (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/cflags.guess (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/doc (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/doc/kpp_UserManual.pdf (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/drv (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/drv/exact.c (added) * 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(added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/int.modified_WCOPY/rosenbrock_soa.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/int.modified_WCOPY/rosenbrock_tlm.def (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/int.modified_WCOPY/rosenbrock_tlm.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/int.modified_WCOPY/runge_kutta.c (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/int.modified_WCOPY/runge_kutta.def (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/int.modified_WCOPY/runge_kutta.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/int.modified_WCOPY/runge_kutta_adj.def (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/int.modified_WCOPY/runge_kutta_adj.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/int.modified_WCOPY/runge_kutta_tlm.def (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/int.modified_WCOPY/runge_kutta_tlm.f90 (added) * 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palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/models/cmaq_s99.def (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/models/cmaq_s99.eqn (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/models/cmaq_s99.spc (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/models/saprc99.def (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/models/saprc99.eqn (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/models/saprc99.spc (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/models/saprcnov.def (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/models/saprcnov.eqn (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/models/saprcnov.spc (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/models/small_strato.def (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/models/small_strato.eqn (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/models/small_strato.spc (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/models/smog.def (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/models/smog.eqn (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/models/smog.spc (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/models/stochastic_dimer.def (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/models/strato.def (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/models/strato.eqn (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/models/strato.spc (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/models/test_pentane.def (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/models/test_pentane.eqn (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/models/test_pentane.spc (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/models/tropo.def (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/models/tropo.eqn (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/models/tropo.spc (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/models/wet.def (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/models/wet.eqn (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/models/wet.spc (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/readme (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/site-lisp (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/site-lisp/kpp.el (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/src (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/src/Makefile (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/src/code.c (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/src/code.h (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/src/code_c.c (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/src/code_f77.c (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/src/code_f90.c (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/src/code_matlab.c (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/src/copyright (added) * 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palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/Makefile.c (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/Makefile.f (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/Makefile.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/Mex_Fun.c (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/Mex_Fun.f (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/Mex_Fun.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/Mex_Hessian.c (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/Mex_Hessian.f (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/Mex_Hessian.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/Mex_Jac_SP.c (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/Mex_Jac_SP.f (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/Mex_Jac_SP.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/Template_Fun_Chem.m (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/Template_Jac_Chem.m (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/UpdateSun.c (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/UpdateSun.f (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/UpdateSun.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/UpdateSun.m (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/UserRateLaws.c (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/UserRateLaws.f (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/UserRateLaws.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/UserRateLaws.f90_orig (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/UserRateLaws.m (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/UserRateLaws_FcnHeader.f (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/blas.c (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/blas.f (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/blas.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/dFun_dRcoeff.c (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/dFun_dRcoeff.f (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/dFun_dRcoeff.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/dFun_dRcoeff.m (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/dJac_dRcoeff.c (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/dJac_dRcoeff.f (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/dJac_dRcoeff.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/dJac_dRcoeff.m (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/mex.c (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/mex.f (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/ncar.c (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/ncar.h (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/sparsity_plots.m (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/sutil.c (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/sutil.f (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/sutil.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/tag2num.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/util.c (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/util.f (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/util.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp/util/util.m (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/Makefile (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/bin (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/bin/kpp4palm.exe (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/bin/kpp4palm.ksh (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/doc (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/doc/MESSy_in_PALM.odt (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/doc/MESSy_in_PALM.pdf (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/include (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/integr (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/integr/kpp_lsode.kpp (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/integr/kpp_radau5.kpp (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/integr/kpp_sdirk.kpp (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/integr/kpp_seulex.kpp (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/integr/rosenbrock.kpp (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/integr/rosenbrock_mz.kpp (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/integr/rosenbrock_posdef.kpp (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/integr/rosenbrock_posdef_h211b_qssa.kpp (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/integr/rosenbrock_vec.kpp (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/src (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/src/Makefile (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/src/TAGS (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/src/create_kpp_module.C (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/src/create_kpp_module.h (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/src/expand_decomp.C (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/src/expand_decomp.h (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/src/fortran_file.C (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/src/fortran_file.h (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/src/fortran_file_vec.C (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/src/kpp4palm.exe (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/src/main.C (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/src/program_line.C (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/src/program_line.h (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/src/utils.C (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/src/utils.h (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/templates (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/templates/initialize_kpp_ctrl_template.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/templates/messy_main_tools_kp4_compress.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/templates/module_header (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/templates/rosenbrock_vec.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/templates/rosenbrock_vec.f90.save (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/mechanisms (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/mechanisms/UserRateLaws.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/mechanisms/def_passive (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/mechanisms/def_passive/chem_gasphase_mod.kpp (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/mechanisms/def_passive/passive.eqn (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/mechanisms/def_passive/passive.spc (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/mechanisms/def_simple (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/mechanisms/def_simple/chem_gasphase_mod.kpp (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/mechanisms/def_simple/simple.eqn (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/mechanisms/def_simple/simple.spc (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/mechanisms/def_smog (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/mechanisms/def_smog/chem_gasphase_mod.kpp (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/mechanisms/def_smog/smog.eqn (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/mechanisms/def_smog/smog.spc (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/run_kpp4palm.ksh (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/tmp_kpp4palm (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/tmp_kpp4palm/Makefile_chem_gasphase_mod (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/tmp_kpp4palm/chem_gasphase_mod.kpp (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/tmp_kpp4palm/chem_gasphase_mod.map (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/tmp_kpp4palm/chem_gasphase_mod_Function.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/tmp_kpp4palm/chem_gasphase_mod_Global.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/tmp_kpp4palm/chem_gasphase_mod_Hessian.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/tmp_kpp4palm/chem_gasphase_mod_HessianSP.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/tmp_kpp4palm/chem_gasphase_mod_Initialize.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/tmp_kpp4palm/chem_gasphase_mod_Integrator.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/tmp_kpp4palm/chem_gasphase_mod_Jacobian.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/tmp_kpp4palm/chem_gasphase_mod_JacobianSP.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/tmp_kpp4palm/chem_gasphase_mod_LinearAlgebra.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/tmp_kpp4palm/chem_gasphase_mod_Model.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/tmp_kpp4palm/chem_gasphase_mod_Monitor.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/tmp_kpp4palm/chem_gasphase_mod_Parameters.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/tmp_kpp4palm/chem_gasphase_mod_Precision.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/tmp_kpp4palm/chem_gasphase_mod_Rates.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/tmp_kpp4palm/chem_gasphase_mod_Stoichiom.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/tmp_kpp4palm/chem_gasphase_mod_StoichiomSP.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/tmp_kpp4palm/chem_gasphase_mod_Util.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/tmp_kpp4palm/chem_gasphase_mod_mex_Fun.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/tmp_kpp4palm/chem_gasphase_mod_mex_Hessian.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/tmp_kpp4palm/chem_gasphase_mod_mex_Jac_SP.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/tmp_kpp4palm/file_list (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/tmp_kpp4palm/include_list (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/tmp_kpp4palm/initialize_kpp_ctrl_template.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/tmp_kpp4palm/interface_ignore_list (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/tmp_kpp4palm/kk_kpp.f90 (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/tmp_kpp4palm/module_header (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/tmp_kpp4palm/passive.eqn (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/tmp_kpp4palm/passive.spc (added) * palm/trunk/UTIL/chemistry/gasphase_preproc/tmp_kpp4palm/subroutine_list (added) * palm/trunk/UTIL/combine_plot_fields.f90 (modified) * palm/trunk/UTIL/combine_plot_fields_single_open.f90 (modified) * palm/trunk/UTIL/compare_palm_logs.f90 (modified) * palm/trunk/UTIL/find_palm_config.f90 (modified) * palm/trunk/UTIL/inifor (added) * palm/trunk/UTIL/inifor/Makefile (added) * palm/trunk/UTIL/inifor/Makefile.gnu (added) * palm/trunk/UTIL/inifor/Makefile.ifort (added) * palm/trunk/UTIL/inifor/README (added) * palm/trunk/UTIL/inifor/doc (added) * palm/trunk/UTIL/inifor/doc/doxygen.config (added) * palm/trunk/UTIL/inifor/namelist (added) * palm/trunk/UTIL/inifor/src (added) * palm/trunk/UTIL/inifor/src/Makefile (added) * palm/trunk/UTIL/inifor/src/control.f90 (added) * palm/trunk/UTIL/inifor/src/defs.f90 (added) * palm/trunk/UTIL/inifor/src/grid.f90 (added) * palm/trunk/UTIL/inifor/src/inifor.f90 (added) * palm/trunk/UTIL/inifor/src/io.f90 (added) * palm/trunk/UTIL/inifor/src/transform.f90 (added) * palm/trunk/UTIL/inifor/src/types.f90 (added) * palm/trunk/UTIL/inifor/src/util.f90 (added) * palm/trunk/UTIL/inifor/tests (added) * palm/trunk/UTIL/inifor/tests/Makefile (added) * palm/trunk/UTIL/inifor/tests/Makefile.gnu (added) * palm/trunk/UTIL/inifor/tests/Makefile.ifort (added) * palm/trunk/UTIL/inifor/tests/test-boundaries.f90 (added) * palm/trunk/UTIL/inifor/tests/test-centre-velocities.f90 (added) * palm/trunk/UTIL/inifor/tests/test-grid.f90 (added) * palm/trunk/UTIL/inifor/tests/test-input-files.f90 (added) * palm/trunk/UTIL/inifor/tests/test-interpolation.f90 (added) * palm/trunk/UTIL/inifor/tests/test-prototype.f90 (added) * palm/trunk/UTIL/inifor/tests/test-transform.f90 (added) * palm/trunk/UTIL/inifor/tests/util.f90 (added) * palm/trunk/UTIL/interpret_config.f90 (modified) * palm/trunk/UTIL/read_palm_netcdf_data.f90 (modified) * palm/trunk/UTIL/read_prt_data.f90 (modified) Merge of branch palm4u into trunk Wed, 13 Dec 2017 12:33:49 GMT raasch [2693] * palm/trunk/SCRIPTS/.palm.config.crayh (modified) * palm/trunk/SCRIPTS/.palm.config.default (modified) * palm/trunk/SCRIPTS/.palm.config.default.in (modified) * palm/trunk/SCRIPTS/.palm.config.idefix (modified) * palm/trunk/SCRIPTS/.palm.config.imuk (modified) * palm/trunk/SCRIPTS/palmrun (modified) replacement of variables in configuration file is done in a more ... Wed, 06 Dec 2017 16:32:19 GMT raasch [2670] * palm/trunk/SCRIPTS/palmrun (modified) test printouts removed Wed, 06 Dec 2017 16:03:27 GMT raasch [2669] * palm/trunk/SCRIPTS/.palm.iofiles (modified) * palm/trunk/SCRIPTS/palmrun (modified) * palm/trunk/SOURCE/check_open.f90 (modified) * palm/trunk/SOURCE/check_parameters.f90 (modified) * palm/trunk/SOURCE/init_coupling.f90 (modified) * palm/trunk/SOURCE/modules.f90 (modified) * palm/trunk/SOURCE/plant_canopy_model_mod.f90 (modified) * palm/trunk/SOURCE/pmc_interface_mod.f90 (modified) * palm/trunk/SOURCE/synthetic_turbulence_generator_mod.f90 (modified) * palm/trunk/SOURCE/wind_turbine_model_mod.f90 (modified) * palm/trunk/UTIL/combine_plot_fields.f90 (modified) file attributes and activation strings in .palm.iofiles revised, file ... Thu, 23 Nov 2017 13:09:53 GMT raasch [2639] * palm/trunk/SCRIPTS/palmrun (modified) bugfix for r2638: switchback to palmrun r2636 Thu, 23 Nov 2017 12:44:23 GMT raasch [2638] * palm/trunk/SCRIPTS/palmrun (modified) * palm/trunk/SOURCE/diffusion_u.f90 (modified) * palm/trunk/SOURCE/diffusion_v.f90 (modified) * palm/trunk/SOURCE/surface_mod.f90 (modified) bugfix for cases with constant top momentumflux Wed, 15 Nov 2017 08:24:11 GMT raasch [2610] * palm/trunk/SCRIPTS/palmrun (modified) * palm/trunk/SOURCE/lpm_advec.f90 (modified) use of wildcards in file connection statements enabled, bugfix in ... Thu, 09 Nov 2017 15:31:46 GMT raasch [2605] * palm/trunk/SCRIPTS/palmrun (modified) input files are not sent with remote batch job file any more Wed, 01 Nov 2017 14:11:20 GMT raasch [2600] * palm/trunk/SCRIPTS/batch_scp (modified) * palm/trunk/SCRIPTS/palmrun (modified) * palm/trunk/SOURCE/Makefile (modified) * palm/trunk/SOURCE/init_pegrid.f90 (modified) * palm/trunk/SOURCE/parin.f90 (modified) small changes concerning r2599, cycle number are now three digits wide Fri, 20 Oct 2017 08:50:47 GMT raasch [2566] * palm/trunk/SCRIPTS/palmbuild (modified) * palm/trunk/SCRIPTS/palmrun (modified) palmrun adjusted for grid engine batch systems, informative messages ... Wed, 18 Oct 2017 07:25:11 GMT raasch [2551] * palm/trunk/SCRIPTS/palmrun (modified) TEMPDIR added as replacement string to be used in batch directives Wed, 04 Oct 2017 08:26:59 GMT raasch [2512] * palm/trunk/SCRIPTS/palmrun (modified) * palm/trunk/SOURCE/check_open.f90 (modified) * palm/trunk/SOURCE/data_output_2d.f90 (modified) * palm/trunk/SOURCE/data_output_3d.f90 (modified) * palm/trunk/SOURCE/land_surface_model_mod.f90 (modified) * palm/trunk/SOURCE/netcdf_interface_mod.f90 (modified) * palm/trunk/SOURCE/palm.f90 (modified) * palm/trunk/SOURCE/plant_canopy_model_mod.f90 (modified) * palm/trunk/SOURCE/radiation_model_mod.f90 (modified) * palm/trunk/SOURCE/urban_surface_mod.f90 (modified) * palm/trunk/SOURCE/user_data_output_2d.f90 (modified) * palm/trunk/SOURCE/user_data_output_3d.f90 (modified) * palm/trunk/SOURCE/user_parin.f90 (modified) * palm/trunk/UTIL/combine_plot_fields.f90 (modified) upper bounds of cross section and 3d output changed from nx+1,ny+1 to ... Fri, 29 Sep 2017 10:55:13 GMT raasch [2507] * palm/trunk/SCRIPTS/palmrun (modified) bugfix for determining cycle numbers of NetCDF input files Fri, 29 Sep 2017 08:30:37 GMT raasch [2506] * palm/trunk/SCRIPTS/palmbuild (modified) * palm/trunk/SCRIPTS/palmrun (modified) new options -V and -W plus other small changes in PALM scripts Tue, 26 Sep 2017 11:41:55 GMT raasch [2501] * palm/trunk/SCRIPTS/palmrun (modified) default value for number of cores (option -X) set to 1, bugfix for ... Fri, 22 Sep 2017 16:47:58 GMT kanani [2499] * palm/trunk/SCRIPTS/.palm.iofiles (modified) * palm/trunk/SCRIPTS/palmrun (modified) * palm/trunk/SOURCE/modules.f90 (modified) minor bugfixes Tue, 19 Sep 2017 06:24:14 GMT maronga [2480] * palm/trunk/SCRIPTS/.palm.config.crayh (modified) * palm/trunk/SCRIPTS/palmrun (modified) * palm/trunk/SCRIPTS/palmrungui.py (modified) * palm/trunk/SCRIPTS/palmrungui_files/mainwindow.ui (modified) added support for specifying project account in PBS Tue, 19 Sep 2017 06:12:16 GMT raasch [2479] * palm/trunk/SCRIPTS/palmrun (modified) option -A for project account added to palmrun Fri, 08 Sep 2017 08:25:41 GMT raasch [2422] * palm/trunk/SCRIPTS/palmbuild (modified) * palm/trunk/SCRIPTS/palmrun (modified) * palm/trunk/SOURCE/check_parameters.f90 (modified) new palm-scripts set to version number 1.0, further check for ... Thu, 07 Sep 2017 06:20:11 GMT raasch [2420] * palm/trunk/SCRIPTS/palmbuild (modified) * palm/trunk/SCRIPTS/palmrun (modified) PALM_BIN setting removed from new scripts Wed, 06 Sep 2017 08:16:30 GMT Giersch [2410] * palm/trunk/SCRIPTS/palmbuild (modified) * palm/trunk/SCRIPTS/palmrun (modified) * palm/trunk/SCRIPTS/testsuite (modified) * palm/trunk/SOURCE/wind_turbine_model_mod.f90 (modified) * palm/trunk/UTIL/Makefile_utilities (modified) Revise error message PA0462 and change lclocal to lcmuk in testsuite Tue, 05 Sep 2017 11:17:46 GMT raasch [2405] * palm/trunk/SCRIPTS/.palm.config.crayh (added) * palm/trunk/SCRIPTS/.palm.iofiles (added) * palm/trunk/SCRIPTS/palmrun (modified) bugfix for palmrun, some default config files for new scripts added Tue, 05 Sep 2017 09:33:14 GMT raasch [2404] * palm/trunk/SCRIPTS/palmbuild (modified) * palm/trunk/SCRIPTS/palmrun (modified) further simplifications in palmrun and palmbuild Mon, 04 Sep 2017 16:15:48 GMT knoop [2396] * palm/trunk/SCRIPTS/palmbuild (modified) * palm/trunk/SCRIPTS/palmrun (modified) Bugfix: in palmrun and palmbuild Mon, 04 Sep 2017 16:05:45 GMT knoop [2393] * palm/trunk/SCRIPTS/palmrun (modified) syntax change in palmrun variable substitution Mon, 04 Sep 2017 12:49:36 GMT raasch [2388] * palm/trunk/SCRIPTS/palmbuild (modified) * palm/trunk/SCRIPTS/palmrun (modified) string loader replaced by linker Mon, 04 Sep 2017 12:08:40 GMT raasch [2385] * palm/trunk/SCRIPTS/palmrun (modified) job-catalog changes in palmrun Mon, 04 Sep 2017 11:39:54 GMT raasch [2384] * palm/trunk/SCRIPTS/palmbuild (modified) * palm/trunk/SCRIPTS/palmrun (modified) small changes and bugfixes for new palm-scripts Fri, 01 Sep 2017 10:53:46 GMT raasch [2381] * palm/trunk/SCRIPTS/palmrun (modified) # in file connection statements replaced by r for restart runs Fri, 01 Sep 2017 08:33:46 GMT raasch [2380] * palm/trunk/SCRIPTS/palmbuild (added) * palm/trunk/SCRIPTS/palmrun (added) * palm/trunk/UTIL/Makefile_utilities (copied) initial versions for new scripts palmrun and palmbuild