#$Id: .palm.config.aurora 4814 2020-12-09 13:08:08Z forkel $
#column 1          column 2
#name of variable  value of variable (~ must not be used)
#----------------------------------------------------------------------------
%base_directory      $HOME/palm/current_version
%base_data           ~/palm/current_version/JOBS
%source_path         $HOME/palm/current_version/trunk/SOURCE
%user_source_path    $base_data/$run_identifier/USER_CODE
%fast_io_catalog     /scratch/<replace by LUIS username>
%restart_data_path   /scratch/<replace by LUIS username>
%output_data_path    $base_data
%local_jobcatalog    $base_data/$run_identifier/LOG_FILES

%local_ip            130.75.7.130
%local_username      <replace by LUIS username>
%defaultqueue        all
%submit_command      /usr/bin/qsub

%compiler_name       mpinfort
%compiler_name_ser   mpinfort
%cpp_options         -fpp -D__parallel -D__nec -D__netcdf -D__netcdf4 -D__netcdf4_parallel -D__fftw -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION
%make_options        -j 4
%compiler_options    -O3 -traceback -finline-functions -g -report-all -Werror -I /home/nhbkklau/opt/NetCDF_parallel_nec/include -I /home/nhbkklau/opt/fftw3_nec/include
%linker_options      -L/home/nhbkklau/opt/NetCDF_parallel_nec/lib -lnetcdff -lnetcdf -Wl,-rpath=/home/nhbkklau/opt/NetCDF_parallel_nec/lib -L/home/nhbkklau/opt/hdf5_parallel_nec/lib -lhdf5 -lhdf5_hl -Wl,-rpath=/home/nhbkklau/opt/hdf5_parallel_nec/lib -L/home/nhbkklau/opt/fftw3_nec/lib -lfftw3 -lmpi
%execute_command     mpirun -v -ve 0-3  -np {{mpi_tasks}}  ./palm
%memory              2000
%login_init_cmd      source /opt/nec/ve/mpi/2.2.0/bin/necmpivars.sh

# BATCH-directives to be used for batch jobs.
# ATTENTION: The following batch directives still need to be adjusted for the
#            NEC Aurora system!!!!!!!!!!!!!!
BD:#!/bin/bash
#BD:#PBS -A {{project_account}}
BD:#PBS -N {{run_id}}
BD:#PBS -l walltime={{cpu_hours}}:{{cpu_minutes}}:{{cpu_seconds}}
BD:#PBS -l ncpus={{cores}}
BD:#PBS -l nodes={{nodes}}:ppn={{tasks_per_node}}
BD:#PBS -l mem={{memory}}mb
BD:#PBS -W x=PARTITION:lena
BD:#PBS -o {{job_protocol_file}}
BD:#PBS -j oe
BD:#PBS -q {{queue}}

#----------------------------------------------------------------------------
# INPUT-commands, executed before running PALM - lines must start with "IC:"
#----------------------------------------------------------------------------
#IC:ulimit -s unlimited

#----------------------------------------------------------------------------
# ERROR-commands - executed when program terminates abnormally
#----------------------------------------------------------------------------
EC:[[ \$locat = execution ]]  &&  cat  RUN_CONTROL
EC:[[ \$locat = execution ]]  &&  cat  PARTICLE_INFOS/*

#----------------------------------------------------------------------------
# OUTPUT-commands - executed when program terminates normally
#----------------------------------------------------------------------------
# Combine 1D- and 3D-profile output (these files are not usable for plotting)
OC:[[ -f LIST_PROFIL_1D     ]]  &&  cat  LIST_PROFIL_1D  >>  LIST_PROFILE
OC:[[ -f LIST_PROFIL        ]]  &&  cat  LIST_PROFIL     >>  LIST_PROFILE

# Combine all particle information files
OC:[[ -f PARTICLE_INFOS/_0000 ]]  &&  cat  PARTICLE_INFOS/* >> PARTICLE_INFO