################################################################################
# This is a configuration file for PALM. It must be named: .palm.config.<suffix>
# in order to use it, call palmbuild and palmrun with the option: -h <suffix>
# Documentation: https://palm.muk.uni-hannover.de/trac/wiki/doc/app/jobcontrol
################################################################################
#
#-------------------------------------------------------------------------------
# General compiler and host configuration section.
# Variable declaration lines must start with a percent character
# Internal variables can be used as {{VARIABLE_NAME}}. Please see documentation.
#-------------------------------------------------------------------------------
%base_directory      @CMAKE_INSTALL_PREFIX@
%base_data           @CMAKE_INSTALL_PREFIX@/JOBS
%source_path         @CMAKE_INSTALL_PREFIX@/trunk/SOURCE
%user_source_path    @CMAKE_INSTALL_PREFIX@/JOBS/$run_identifier/USER_CODE
%fast_io_catalog     @CMAKE_INSTALL_PREFIX@/tmp
%local_jobcatalog    @CMAKE_INSTALL_PREFIX@/job_logfiles
#%remote_jobcatalog   <path/to/directory>
#
%local_ip            127.0.0.1
%local_hostname      @PALM_HOSTNAME@
%local_username      @CMAKE_USERNAME@
#
#%remote_ip           <ip>
#%remote_hostname     <hostname>
#%remote_loginnode    <loginnode>
#%remote_username     <username>
#%ssh_key             ~/.ssh/id_rsa
#
#%defaultqueue        <queue>
#%submit_command      /opt/moab/default/bin/msub -E
#
%compiler_name       @MPI_Fortran_COMPILER@
%compiler_name_ser   @CMAKE_Fortran_COMPILER@
%cpp_options         @PALM_CPP_OPTIONS_STR@
%make_options        -j @PALM_CORES@
%compiler_options    @PALM_COMPILER_OPTIONS@
%linker_options      @PALM_LINKER_OPTIONS@
%execute_command     @PALM_EXECUTE_COMMAND@ ./palm
#%memory              2300
#%module_commands     module switch craype-ivybridge craype-haswell; module load fftw cray-hdf5-parallel cray-netcdf-hdf5parallel
#%login_init_cmd      .execute_special_profile
#
#-------------------------------------------------------------------------------
# Directives to be used for batch jobs
# Lines must start with "BD:". If $-characters are required, hide them with \
# Internal variables can be used as {{variable_name}}. Please see documentation.
#-------------------------------------------------------------------------------
BD:#!/bin/bash
BD:#PBS -N {{run_id}}
BD:#PBS -l walltime={{cpu_hours}}:{{cpu_minutes}}:{{cpu_seconds}}
BD:#PBS -l nodes={{nodes}}:ppn={{tasks_per_node}}
BD:#PBS -o {{job_protocol_file}}
BD:#PBS -j oe
BD:#PBS -q {{queue}}
#
#-------------------------------------------------------------------------------
# Directives for batch jobs used to send back the jobfiles from a remote to a local host
# Lines must start with "BDT:". If $-characters are required, excape them with triple backslash
# Internal variables can be used as {{variable_name}}. Please see documentation.
#-------------------------------------------------------------------------------
BDT:#!/bin/bash
BDT:#PBS -N job_protocol_transfer
BDT:#PBS -l walltime=00:30:00
BDT:#PBS -l nodes=1:ppn=1
BDT:#PBS -o {{job_transfer_protocol_file}}
BDT:#PBS -j oe
BDT:#PBS -q dataq
#
#-------------------------------------------------------------------------------
# INPUT-commands. These commands are executed before running PALM 
# Lines must start with "IC:" 
#-------------------------------------------------------------------------------
IC:ulimit  -s unlimited
#
#-------------------------------------------------------------------------------
# ERROR-commands. These commands are executed when PALM terminates abnormally
# Lines must start with "EC:" 
#-------------------------------------------------------------------------------
EC:[[ $locat = execution ]]  &&  cat  RUN_CONTROL
#
#-------------------------------------------------------------------------------
# OUTPUT-commands. These commands are executed when PALM terminates normally
# Lines must start with "OC:" 
#-------------------------------------------------------------------------------
#
# Combine 1D- and 3D-profile output (these files are not usable for plotting)
OC:[[ -f LIST_PROFIL_1D     ]]  &&  cat  LIST_PROFIL_1D  >>  LIST_PROFILE
OC:[[ -f LIST_PROFIL        ]]  &&  cat  LIST_PROFIL     >>  LIST_PROFILE
#
# Combine all particle information files
OC:[[ -f PARTICLE_INFOS/_0000 ]]  &&  cat  PARTICLE_INFOS/* >> PARTICLE_INFO