#$Id: .palm.config.crayb_debug 3465 2018-10-30 18:26:17Z forkel $ #column 1 column 2 #name of variable value of variable (~ must not be used) #---------------------------------------------------------------------------- %base_data ~/palm/current_version/JOBS %base_directory $HOME/palm/current_version %source_path $HOME/palm/current_version/trunk/SOURCE %user_source_path $base_directory/JOBS/$run_identifier/USER_CODE %fast_io_catalog /gfs2/tmp/ %local_jobcatalog /home//job_logfiles %remote_jobcatalog /home/h//job_logfiles # %local_ip 130.75.105.106 %local_username %remote_ip 130.73.233.1 %remote_loginnode blogin1 %remote_username %ssh_key id_rsa_hlrn %defaultqueue mpp2testq %submit_command /opt/moab/default/bin/msub -E # %compiler_name ftn %compiler_name_ser ftn %cpp_options -e Z -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION -D__parallel -D__netcdf -D__netcdf4 -D__netcdf4_parallel -D__fftw %make_options -j 4 %compiler_options -ei -eD -em -g -R b -K trap=fp,ovf,unf -O0 -hnoomp %linker_options -ei -eD -em -g -R b -K trap=fp,ovf,unf -O0 -hnoomp -dynamic %execute_command aprun -n {{mpi_tasks}} -N {{tasks_per_node}} palm %execute_command_for_combine aprun -n 1 -N 1 ./combine_plot_fields.x %memory 2300 %module_commands module switch craype-ivybridge craype-haswell; module load fftw cray-hdf5-parallel cray-netcdf-hdf5parallel # # # BATCH-directives to be used for batch jobs BD:#!/bin/bash BD:#PBS -A {{project_account}} BD:#PBS -N {{run_id}} BD:#PBS -l walltime={{cpu_hours}}:{{cpu_minutes}}:{{cpu_seconds}} BD:#PBS -l nodes={{nodes}}:ppn={{tasks_per_node}} BD:#PBS -o {{job_protocol_file}} BD:#PBS -j oe BD:#PBS -q {{queue}} # # # BATCH-directives for batch jobs used to send back the jobfile from a remote to a local host BDT:#!/bin/bash BDT:#PBS -A {{project_account}} BDT:#PBS -N job_protocol_transfer BDT:#PBS -l walltime=00:30:00 BDT:#PBS -l nodes=1:ppn=1 BDT:#PBS -o {{job_transfer_protocol_file}} BDT:#PBS -j oe BDT:#PBS -q dataq # #---------------------------------------------------------------------------- # INPUT-commands, executed before running PALM - lines must start with "IC:" #---------------------------------------------------------------------------- IC:export ATP_ENABLED=1 IC:export MPICH_GNI_BTE_MULTI_CHANNEL=disabled IC:ulimit -s unlimited IC:echo \\\"PALM run with job id {{run_id}} started\\\" | mail # #---------------------------------------------------------------------------- # ERROR-commands - executed when program terminates abnormally #---------------------------------------------------------------------------- EC:[[ \$locat = execution ]] && cat RUN_CONTROL # #---------------------------------------------------------------------------- # OUTPUT-commands - executed when program terminates normally #---------------------------------------------------------------------------- # OC:echo \\\"PALM run with job id {{run_id}} finished\\\" | mail