#!/bin/ksh # # run_kpp4palm - script for running gasphase preprocessor #------------------------------------------------------------------------------# # This file is part of the PALM model system. # # PALM is free software: you can redistribute it and/or modify it under the terms # of the GNU General Public License as published by the Free Software Foundation, # either version 3 of the License, or (at your option) any later version. # # PALM is distributed in the hope that it will be useful, but WITHOUT ANY # WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR # A PARTICULAR PURPOSE. See the GNU General Public License for more details. # # You should have received a copy of the GNU General Public License along with # PALM. If not, see . # # Copyright 2017-2018 Klaus Ketelsen and MPI-CH (April 2007) # Copyright 2017-2018 Karlsruhe Institute of Technology # Copyright 2017-2018 Leibniz Universitaet Hannover #------------------------------------------------------------------------------# # # Current revisions: # ------------------ # # # Former revisions: # ----------------- # $Id: run_kpp4palm.ksh 3487 2018-11-05 07:18:02Z eckhard $ # Some correctetion of comments # # 3458 2018-10-30 14:51:23Z kanani # passed $MECH insted of $DEFDIR to kpp4palm.ksh forkel 25. Sept. 2018 # re-activaded choice of deindexing method and vector mode forkel June 2018 # # 2718 2018-01-02 08:49:38Z maronga # Initial revision # # # # # Other notes: # ------------ # Small adaptations (added MECH as argument, re-introduced relative path, # adaption to changing kp4 to kpp4palm) # filename changed from run_kp4.ksh to run_kpp4palm.ksh # # Nov. 2016: Initial Version of KPP chemistry by Klaus Ketelsen # echo "\$1 = " $1 if [[ $1 == "clean" ]] then cd kpp make distclean cd .. cd kpp4palm make distclean cd .. exit fi export PATH=$PATH:`pwd`/kpp4palm/bin # build kpp cp mechanisms/UserRateLaws.f90 kpp/util cd kpp make cd .. # build kpp4palm.exe cd kpp4palm make install cd .. # run kpp4palm/bin/kpp4palm.ksh with the following Setup # -d DEFDIR=$OPTARG;; # directory of definition files # (passed as `pwd`/mechanisms/def_$MECH) # -m MECH="smog";; # chemical mechanism # (smog, simple, simplep, cbm4, phstat, passive, passive1) # -i DE_INDEX=2;; # deindexing method (0,1,2,3; 0=no deindexing) # -v MODE="-v";; # vector mode on (not working completely yet) # -l VLEN=$OPTARG;; # Set vector length (not working completely yet) # -k KEEP="NO";; # if "yes" keep Working directory # -u UPDT="NO";; # if "yes" update the existing f90 code in the def_MECH directory # # Use "YES" with care as the existing sample file is overwritten # ## Further options (not passed as changing does not make sense to change these) ## -f DE_INDEX_FAST="YES";; # if set, fast deindexing ## -o OUTDIR=$OPTARG;; # Output directory of Generated Code ## (`pwd`/../../../SOURCE) ## -p PREFIX=$OPTARG;; # Name Prefix (chem_gasphase_mod) ## -s KPP_SOLVER=$OPTARG;; # Name Prefix (rosenbrock) echo $PATH # use smog mechnism as default MECH=smog DEIN=2 while getopts m:i:kuvl: opt # get options do case $opt in m) MECH=$OPTARG;; # mechanism name as part of mechanisms/def_[mechanism_name] i) DEIN=$OPTARG;; # deindexing method (0,1,2,3; 0=no deindexing) k) KEEP="-k";; # keep Working directory u) UPDT="-u";; # update sample output file v) MODE="-v";; # vector mode on c) COPY="-c";; # copy output to def_MECH l) VLEN=$OPTARG;; # Set vector length \?) print ${0##*/} "unknown option:" $OPTARG print "USAGE: ${0##*/} [ -m mechanism_name] [ -i n (n=0,1,2,3)] [ -k] [ -u] [ -v] [ -l N (N=vector length)]" exit 1;; esac done echo Now do kpp4palm for $MECH # kpp4palm.ksh -d `pwd`/mechanisms/def_$MECH -i $DEIN $KEEP $UPDT $MODE -l $VLEN kpp4palm.ksh -m $MECH -i $DEIN $KEEP $UPDT $MODE -l $VLEN