#$Id: .palm.config.crayh 2405 2017-09-05 11:17:46Z maronga $ #column 1 column 2 #name of variable value of variable (~ must not be used) #---------------------------------------------------------------------------- %base_directory $HOME/palm/current_version %base_data ~/palm/current_version/JOBS %source_path $HOME/palm/current_version/trunk/SOURCE %user_source_path $base_directory/JOBS/$fname/USER_CODE %fast_io_catalog /gfs2/work/niksiraa %local_jobcatalog /home/raasch/job_queue %remote_jobcatalog /home/h/niksiraa/job_queue # %local_ip 130.75.105.103 %local_hostname bora_imuk %local_username raasch %remote_ip 130.75.4.1 %remote_hostname cray-han %remote_loginnode hlogin1 %remote_username niksiraa %ssh_key id_rsa_hlrn %defaultqueue mpp2testq %submit_command /opt/moab/default/bin/msub -E # %compiler_name ftn %compiler_name_ser ftn %cpp_options -e Z -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION -D__parallel -D__netcdf -D__netcdf4 -D__netcdf4_parallel -D__fftw %make_options -j 4 %compiler_options -em -O3 -hnoomp -hnoacc -hfp3 -hdynamic %linker_options -em -O3 -hnoomp -hnoacc -hfp3 -hdynamic -dynamic %execute_command aprun -n {{MPI_TASKS}} -N {{TASKS_PER_NODE}} palm %memory 2300 %module_commands module load fftw cray-hdf5-parallel cray-netcdf-hdf5parallel %login_init_cmd module switch craype-ivybridge craype-haswell # # BATCH-directives to be used for batch jobs. If $-characters are required, hide them with \\\ BD:#!/bin/bash BD:#PBS -N {{JOB_ID}} BD:#PBS -l walltime={{CPU_HOURS}}:{{CPU_MINUTES}}:{{CPU_SECONDS}} BD:#PBS -l nodes={{NODES}}:ppn={{TASKS_PER_NODE}} BD:#PBS -o {{JOBFILE}} BD:#PBS -j oe BD:#PBS -q {{QUEUE}} # # BATCH-directives for batch jobs used to send back the jobfile from a remote to a local host BDT:#!/bin/bash BDT:#PBS -N job_protocol_transfer BDT:#PBS -l walltime=00:30:00 BDT:#PBS -l nodes=1:ppn=1 BDT:#PBS -o {{JOB_TRANSFER_PROTOCOL_FILE}} BDT:#PBS -j oe BDT:#PBS -q dataq # #---------------------------------------------------------------------------- # INPUT-commands, executed before running PALM - lines must start with "IC:" #---------------------------------------------------------------------------- IC:export ATP_ENABLED=1 IC:export MPICH_GNI_BTE_MULTI_CHANNEL=disabled IC:ulimit -s unlimited # #---------------------------------------------------------------------------- # ERROR-commands - executed when program terminates abnormally #---------------------------------------------------------------------------- EC:[[ \$locat = execution ]] && cat RUN_CONTROL # #---------------------------------------------------------------------------- # OUTPUT-commands - executed when program terminates normally #---------------------------------------------------------------------------- # # Combine 1D- and 3D-profile output (these files are not usable for plotting) OC:[[ -f LIST_PROFIL_1D ]] && cat LIST_PROFIL_1D >> LIST_PROFILE OC:[[ -f LIST_PROFIL ]] && cat LIST_PROFIL >> LIST_PROFILE # # Combine all particle information files OC:[[ -f PARTICLE_INFOS/_0000 ]] && cat PARTICLE_INFOS/* >> PARTICLE_INFO