#$Id: .mrun.config.idefix 2264 2017-06-08 16:38:09Z witha $ #column 1 column 2 column 3 #name of variable value of variable (~ must not be used) scope #---------------------------------------------------------------------------- %mainprog palm.f90 %base_directory $HOME/palm/current_version %base_data $base_directory/JOBS %input_path $base_directory/JOBS/$fname/INPUT %output_path $base_directory/JOBS/$fname/OUTPUT %monitoring_path $base_directory/JOBS/$fname/MONITORING %source_path $base_directory/trunk/SOURCE %add_source_path $base_directory/USER_CODE/$fname %tmp_user_catalog /work/ %tmp_data_catalog /work/ %depository_path $base_directory/MAKE_DEPOSITORY %use_makefile true # # Enter your own host below by adding another line containing in the second # column your hostname (as provided by the unix command "hostname") and in the # third column the host identifier. Depending on your operating system, the # first characters of the host identifier should be "lc" (Linux cluster), "ibm" # (IBM-AIX), or "nec" (NEC-SX), respectively. %host_identifier idefix* lcidefix #IDEFIX normal mode %remote_username lcidefix parallel %compiler_name mpif90 lcidefix parallel %compiler_name_ser ifort lcidefix parallel %cpp_options -cpp:-DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf:-D__netcdf4:-D__netcdf4_parallel:-D__fftw:-D__intel_compiler lcidefix parallel %netcdf_inc -I/opt/netcdf4_hdf5parallel/4411c_443f/intel/include lcidefix parallel %netcdf_lib -L/opt/netcdf4_hdf5parallel/4411c_443f/intel/lib:-L/opt/hdf5-parallel/1.10.0-patch/intel/lib:-lnetcdf:-lnetcdff lcidefix parallel %fftw_inc -I:/opt/fftw/3.3.6-pl1/mvapich2-intel/include lcidefix parallel %fftw_lib -L/opt/fftw/3.3.6-pl1/mvapich2-intel/lib:-lfftw3 lcidefix parallel %mopts -j:4 lcidefix parallel %fopts -fpe0:-O3:-cpp:-fp-model:source:-ftz:-fno-alias:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-diag-disable:8290,8291 lcidefix parallel %lopts -fpe0:-O3:-cpp:-fp-model:source:-ftz:-fno-alias:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-diag-disable:8290,829 lcidefix parallel %modules intel-compiler/2017.1.132:mvapich2/2.2/intel:fftw/3.3.6-pl1/mvapich2-intel:hdf5-parallel/1.10.0-patch/intel:netcdf4_hdf5parallel/4411c_443f/intel lcidefix parallel #IDEFIX trace/debug mode %remote_username lcidefix parallel trace %compiler_name mpif90 lcidefix parallel trace %compiler_name_ser ifort lcidefix parallel trace %cpp_options -cpp:-DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf:-D__netcdf4:-D__netcdf4_parallel:-D__fftw:-D__intel_compiler lcidefix parallel trace %netcdf_inc -I/opt/netcdf4_hdf5parallel/4411c_443f/intel/include lcidefix parallel trace %netcdf_lib -L/opt/netcdf4_hdf5parallel/4411c_443f/intel/lib:-L/opt/hdf5-parallel/1.10.0-patch/intel/lib:-lnetcdf:-lnetcdff lcidefix parallel trace %fftw_inc -I:/opt/fftw/3.3.6-pl1/mvapich2-intel/include lcidefix parallel trace %fftw_lib -L/opt/fftw/3.3.6-pl1/mvapich2-intel/lib:-lfftw3 lcidefix parallel trace %mopts -j:4 lcidefix parallel trace %fopts -fpe0:-C:-check:nooutput_conversion:-debug:-traceback:-g:-gen-interfaces:-warn:interfaces:-w:-xT:-O0:-ftz:-fno-alias:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-convert:little_endian:-diag-disable:8290,8291 lcidefix parallel trace %lopts -fpe0:-C:-check:nooutput_conversion:-debug:-traceback:-g:-gen-interfaces:-warn:interfaces:-w:-xT:-O0:-ftz:-fno-alias:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-limf:-lm:-Vaxlib lcidefix parallel trace %modules intel-compiler/2017.1.132:mvapich2/2.2/intel:fftw/3.3.6-pl1/mvapich2-intel:hdf5-parallel/1.10.0-patch/intel:netcdf4_hdf5parallel/4411c_443f/intel lcidefix parallel trace # %write_binary true restart # #---------------------------------------------------------------------------- # INPUT-commands, executed before running PALM - lines must start with "IC:" #---------------------------------------------------------------------------- IC:[[ \$localhost = lcidefix ]] && export MV2_ENABLE_AFFINITY=0 IC:[[ \$localhost = lcidefix ]] && export MV2_SHOW_CPU_BINDING=1 IC:[[ \$localhost = lcidefix ]] && export MV2_CPU_BINDING_POLICY=scatter # #---------------------------------------------------------------------------- # ERROR-commands - executed when program terminates abnormally #---------------------------------------------------------------------------- EC:[[ \$locat = execution ]] && cat RUN_CONTROL EC:pwd # #---------------------------------------------------------------------------- # OUTPUT-commands - executed when program terminates normally #---------------------------------------------------------------------------- # # Combine all particle information files OC:[[ -f PARTICLE_INFOS/_00000 ]] && cat PARTICLE_INFOS/* >> PARTICLE_INFO # #---------------------------------------------------------------------------- # List of input-files #---------------------------------------------------------------------------- BININ in:loc:lnpe d3f $tmp_data_catalog/$fname/RESTART _d3d PARTICLE_RESTART_DATA_IN in:loc:lnpe prtf $tmp_data_catalog/$fname/RESTART _rprt # # PARIN in:job d3# $input_path _p3d PARIN in:job d3f $input_path _p3df NUDGING_DATA in:locopt d3#:d3f $input_path _nudge LSF_DATA in:locopt d3#:d3f $input_path _lsf TOPOGRAPHY_DATA in:locopt d3#:d3f $input_path _topo TOPOGRAPHY_DATA_NC in:locopt d3#:d3f $input_path _topo_nc PLANT_CANOPY_DATA_3D in:locopt d3#:d3f $input_path _canopy URBAN_SURFACE in:locopt d3#:d3f $input_path _urbsurf SURFACE_PARAMETERS in:locopt d3#:d3f $input_path _surfpar STG_PROFILES in:locopt d3#:d3f $input_path _stgpr # # DATA_1D_FL_NETCDF in:locopt flf $output_path _fl nc DATA_1D_PR_NETCDF in:locopt prf $output_path _pr nc DATA_1D_SP_NETCDF in:locopt spf $output_path _sp nc DATA_1D_TS_NETCDF in:locopt tsf $output_path _ts nc DATA_1D_PTS_NETCDF in:locopt ptsf $output_path _pts nc DATA_2D_XY_NETCDF in:locopt xyf $output_path _xy nc DATA_2D_XY_AV_NETCDF in:locopt xyf $output_path _xy_av nc DATA_2D_XZ_NETCDF in:locopt xzf $output_path _xz nc DATA_2D_YZ_NETCDF in:locopt yzf $output_path _yz nc DATA_3D_NETCDF in:locopt 3df $output_path _3d nc DATA_PRT_NETCDF in:locopt:pe prtf $output_path _prt #---------------------------------------------------------------------------- # List of output-files #---------------------------------------------------------------------------- BINOUT out:loc:lnpe restart $tmp_data_catalog/$fname/RESTART _d3d PARTICLE_RESTART_DATA_OUT out:loc:lnpe prt#:prtf $tmp_data_catalog/$fname/RESTART _rprt # # RUN_CONTROL out:loc:tr d3# $monitoring_path _rc RUN_CONTROL out:loc:tra d3f $monitoring_path _rc HEADER out:loc:tr d3# $monitoring_path _header HEADER out:loc:tra d3f $monitoring_path _header CPU_MEASURES out:loc:tr d3# $monitoring_path _cpu CPU_MEASURES out:loc:tra d3f $monitoring_path _cpu # # DATA_1D_FL_NETCDF out:loc:tr fl#:flf $output_path _fl nc DATA_1D_PR_NETCDF out:loc:tr pr#:prf $output_path _pr nc DATA_1D_SP_NETCDF out:loc:tr sp#:spf $output_path _sp nc DATA_1D_TS_NETCDF out:loc:tr ts#:tsf $output_path _ts nc DATA_1D_PTS_NETCDF out:loc:tr pts#:ptsf $output_path _pts nc DATA_2D_XY_NETCDF out:loc:tr xy#:xyf $output_path _xy nc DATA_2D_XY_AV_NETCDF out:loc:tr xy#:xyf $output_path _xy_av nc DATA_2D_XZ_NETCDF out:loc:tr xz#:xzf $output_path _xz nc DATA_2D_XZ_AV_NETCDF out:loc:tr xz#:xzf $output_path _xz_av nc DATA_2D_YZ_NETCDF out:loc:tr yz#:yzf $output_path _yz nc DATA_2D_YZ_AV_NETCDF out:loc:tr yz#:yzf $output_path _yz_av nc DATA_3D_NETCDF out:loc:tr 3d#:3df $output_path _3d nc DATA_3D_AV_NETCDF out:loc:tr 3d#:3df $output_path _3d_av nc DATA_MASK_01_NETCDF out:loc:tr ma#:maf $output_path _m01 nc DATA_MASK_01_AV_NETCDF out:loc:tr ma#:maf $output_path _m01_av nc DATA_MASK_02_NETCDF out:loc:tr ma#:maf $output_path _m02 nc DATA_MASK_02_AV_NETCDF out:loc:tr ma#:maf $output_path _m02_av nc DATA_MASK_03_NETCDF out:loc:tr ma#:maf $output_path _m03 nc DATA_MASK_03_AV_NETCDF out:loc:tr ma#:maf $output_path _m03_av nc DATA_MASK_04_NETCDF out:loc:tr ma#:maf $output_path _m04 nc DATA_MASK_04_AV_NETCDF out:loc:tr ma#:maf $output_path _m04_av nc DATA_MASK_05_NETCDF out:loc:tr ma#:maf $output_path _m05 nc DATA_MASK_05_AV_NETCDF out:loc:tr ma#:maf $output_path _m05_av nc DATA_MASK_06_NETCDF out:loc:tr ma#:maf $output_path _m06 nc DATA_MASK_06_AV_NETCDF out:loc:tr ma#:maf $output_path _m06_av nc DATA_MASK_07_NETCDF out:loc:tr ma#:maf $output_path _m07 nc DATA_MASK_07_AV_NETCDF out:loc:tr ma#:maf $output_path _m07_av nc DATA_MASK_08_NETCDF out:loc:tr ma#:maf $output_path _m08 nc DATA_MASK_08_AV_NETCDF out:loc:tr ma#:maf $output_path _m08_av nc DATA_MASK_09_NETCDF out:loc:tr ma#:maf $output_path _m09 nc DATA_MASK_09_AV_NETCDF out:loc:tr ma#:maf $output_path _m09_av nc DATA_MASK_10_NETCDF out:loc:tr ma#:maf $output_path _m10 nc DATA_MASK_10_AV_NETCDF out:loc:tr ma#:maf $output_path _m10_av nc DATA_MASK_11_NETCDF out:loc:tr ma#:maf $output_path _m11 nc DATA_MASK_11_AV_NETCDF out:loc:tr ma#:maf $output_path _m11_av nc DATA_MASK_12_NETCDF out:loc:tr ma#:maf $output_path _m12 nc DATA_MASK_12_AV_NETCDF out:loc:tr ma#:maf $output_path _m12_av nc DATA_MASK_13_NETCDF out:loc:tr ma#:maf $output_path _m13 nc DATA_MASK_13_AV_NETCDF out:loc:tr ma#:maf $output_path _m13_av nc DATA_MASK_14_NETCDF out:loc:tr ma#:maf $output_path _m14 nc DATA_MASK_14_AV_NETCDF out:loc:tr ma#:maf $output_path _m14_av nc DATA_MASK_15_NETCDF out:loc:tr ma#:maf $output_path _m15 nc DATA_MASK_15_AV_NETCDF out:loc:tr ma#:maf $output_path _m15_av nc DATA_MASK_16_NETCDF out:loc:tr ma#:maf $output_path _m16 nc DATA_MASK_16_AV_NETCDF out:loc:tr ma#:maf $output_path _m16_av nc DATA_MASK_17_NETCDF out:loc:tr ma#:maf $output_path _m17 nc DATA_MASK_17_AV_NETCDF out:loc:tr ma#:maf $output_path _m17_av nc DATA_MASK_18_NETCDF out:loc:tr ma#:maf $output_path _m18 nc DATA_MASK_18_AV_NETCDF out:loc:tr ma#:maf $output_path _m18_av nc DATA_MASK_19_NETCDF out:loc:tr ma#:maf $output_path _m19 nc DATA_MASK_19_AV_NETCDF out:loc:tr ma#:maf $output_path _m19_av nc DATA_MASK_20_NETCDF out:loc:tr ma#:maf $output_path _m20 nc DATA_MASK_20_AV_NETCDF out:loc:tr ma#:maf $output_path _m20_av nc DATA_PRT_NETCDF out:loc:pe prt#:prtf $output_path _prt nc DATA_PRT_NETCDF out:loc:trpe prt#:prtf $output_path _prt nc DATA_DVR out:loc:trpe dvr $output_path _dvr # DVRP_LOG out:loc:tr dv# $monitoring_path _dvrp_log DVRP_LOG out:loc:tra dvf $monitoring_path _dvrp_log PARTICLE_INFO out:loc:tr pt# $monitoring_path _prt_info PARTICLE_INFO out:loc:tra ptf $monitoring_path _prt_info PARTICLE_DATA out:loc:lnpe prt#:prtf $output_path _prt_dat # A BLANK LINE MUST FOLLOW