#$Id: .mrun.config.forwind 1204 2013-07-11 12:50:09Z hoffmann $ #column 1 column 2 column 3 #name of variable value of variable (~ must not be used) scope #---------------------------------------------------------------------------- %mainprog palm.f90 %base_directory $HOME/palm/current_version %base_data ~/palm/current_version/JOBS ################################################################################ # Replace < by your username on FLOW. Replace "/fw/" # by "/iwes/" if your user directory resides in /iwes/. ################################################################################ %output_data /data/work/gpfs/fw//palm/current_version/JOBS %source_path $base_directory/trunk/SOURCE %add_source_path $base_directory/USER_CODE/$fname %depository_path $base_directory/MAKE_DEPOSITORY %use_makefile true # # %host_identifier flow* lcflow %host_identifier cfdl* lcflow %host_identifier cfdh* lcflow %host_identifier cfdx* lcflow ################################################################################ # Replace by the hostname of your desktop # an uncomment following line to enable job submission from you local desktop ################################################################################ #%host_identifier lcfor ################################################################################ # Configuration for Ubuntu Linux 12.04 LTS with gcc (4.6.3) and OpenMPI (1.4.3) # # The next block contains all informations for compiling the PALM code # and for generating and running the PALM executable using MPI on a Linux machine # with gcc and OpenMPI. Replace with your username on your # local machine # # NOTE: - Other hosts may require different settings. # - following packages are required: # openmpi-common, libopenmpi-dev, libopenmpi, libnetcdf, libnetcdf-dev, # gcc # - depending on where you installed netcdf, you may have to adjust the paths # given in %netcdf_inc and %netcdf_lib # ################################################################################ %remote_username lcfor parallel %tmp_user_catalog /tmp lcfor parallel %tmp_data_catalog /tmp lcfor parallel %compiler_name mpif90 lcfor parallel %compiler_name_ser gfortran lcfor parallel %cpp_options -DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__lc:-D__netcdf:-D__netcdf4:-D__parallel lcfor parallel %netcdf_inc -I/usr/include lcfor parallel %netcdf_lib -L/usr/lib:-lnetcdff:-lnetcdf lcfor parallel %mopts -j:4 lcfor parallel %fopts -Ofast:-IPA:-mtune=native:-march=native:-cpp:-fdefault-real-8:-fbackslash:-fconvert=little-endian lcfor parallel %lopts -Ofast:-IPA:-mtune=native:-march=native:-cpp:-fdefault-real-8:-fbackslash lcfor parallel ################################################################################ # Configuration for FLOW # # The next block contains all informations for compiling the PALM code # and for generating and running the PALM executable using MPI. Replace # with your username on FLOW and if necessary "/fw/" by "/iwes/". # The following 'lcflow parallel' block assumes PALM compilation and execution # on host flow. Please note that other hosts may require different settings. ################################################################################ %remote_username lcflow parallel %tmp_user_catalog /data/work/gpfs/fw/$remote_username/tmp lcflow parallel %tmp_data_catalog /data/work/gpfs/fw/$remote_username/palm_restart_data lcflow parallel %compiler_name mpiifort lcflow parallel %compiler_name_ser ifort lcflow parallel %cpp_options -DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__lc:-D__netcdf:-D__netcdf4:-D__parallel lcflow parallel %netcdf_inc -I/cm/shared/apps/netcdf-fortran/4.2/intel/64/2011.0.013/include lcflow parallel %netcdf_lib -L/cm/shared/apps/netcdf-fortran/4.2/intel/64/2011.0.013/lib:-lnetcdff:-L/cm/shared/apps/netcdf/4.2.1.1/intel/64/2011.0.013/lib:-lnetcdf:-L/cm/shared/apps/hdf5/1.8.9/intel/64/2011.0.013/lib:-Wl,-rpath:/cm/shared/apps/hdf5/1.8.9/intel/64/2011.0.013/lib:-Wl,-rpath:/cm/shared/apps/netcdf/4.2.1.1/intel/64/2011.0.013/lib:-Wl,-rpath:/cm/shared/apps/netcdf-fortran/4.2/intel/64/2011.0.013/lib lcflow parallel %mopts -j:8 lcflow parallel %fopts -xhost:-O3:-fpp:-r8:-align:all:-ftz:-fno-alias:-no-scalar-rep:-no-prec-sqrt:-ip:-nbs:-convert:little_endian:-static-intel lcflow parallel %lopts -xhost:-O3:-fpp:-r8:-align:all:-ftz:-fno-alias:-no-scalar-rep:-no-prec-sqrt:-ip:-nbs:-static-intel:-Wl,-rpath:/cm/shared/apps/intel/ics-2011.0.013/composerxe-2011.0.084/compiler/lib/intel64 lcflow parallel %login_init_cmd .:/etc/bashrc lcflow parallel %modules sge/6.2u5p2:netcdf/4.2.1.1/intel/64/2011.0.013:netcdf-fortran/4.2/intel/64/2011.0.013:intel/ics/64/2011.0.013:intel/impi/64/4.1.0.024:hdf5/1.8.9/intel/64/2011.0.013:qt4 lcflow parallel %memory 1800 lcflow parallel %disc_space 50 lcflow parallel # # %write_binary true restart # #---------------------------------------------------------------------------- # INPUT-commands, executed before running PALM - lines must start with "IC:" #---------------------------------------------------------------------------- #IC: # #---------------------------------------------------------------------------- # ERROR-commands - executed when program terminates abnormally #---------------------------------------------------------------------------- EC:[[ \$locat = execution ]] && cat RUN_CONTROL EC:pwd; ls -al # #---------------------------------------------------------------------------- # OUTPUT-commands - executed when program terminates normally #---------------------------------------------------------------------------- # # Combine 1D- and 3D-profile output (these files are not usable for plotting) OC:[[ -f LIST_PROFIL_1D ]] && cat LIST_PROFIL_1D >> LIST_PROFILE OC:[[ -f LIST_PROFIL ]] && cat LIST_PROFIL >> LIST_PROFILE # # Combine all particle information files OC:[[ -f PARTICLE_INFOS/_0000 ]] && cat PARTICLE_INFOS/* >> PARTICLE_INFO # #---------------------------------------------------------------------------- # List of input-files #---------------------------------------------------------------------------- PARIN in:job d3# $base_data/$fname/INPUT _p3d PARIN in:job d3f $base_data/$fname/INPUT _p3df TOPOGRAPHY_DATA in:locopt d3#:d3f $base_data/$fname/INPUT _topo BININ in:loc:flpe d3f:rec $base_data/$fname/RESTART _d3d PARTICLE_RESTART_DATA_IN in:loc:flpe prtf $base_data/$fname/RESTART _rprt DATA_1D_PR_NETCDF in:locopt prf $output_data/$fname/OUTPUT _pr nc DATA_1D_SP_NETCDF in:locopt spf $output_data/$fname/OUTPUT _sp nc DATA_1D_TS_NETCDF in:locopt tsf $output_data/$fname/OUTPUT _ts nc DATA_1D_PTS_NETCDF in:locopt ptsf $output_data/$fname/OUTPUT _pts nc DATA_2D_XY_NETCDF in:locopt xyf $output_data/$fname/OUTPUT _xy nc DATA_2D_XY_AV_NETCDF in:locopt xyf $output_data/$fname/OUTPUT _xy_av nc DATA_2D_XZ_NETCDF in:locopt xzf $output_data/$fname/OUTPUT _xz nc DATA_2D_XZ_AV_NETCDF in:locopt xzf $output_data/$fname/OUTPUT _xz_av nc DATA_2D_YZ_NETCDF in:locopt yzf $output_data/$fname/OUTPUT _yz nc DATA_2D_YZ_AV_NETCDF in:locopt yzf $output_data/$fname/OUTPUT _yz_av nc DATA_3D_NETCDF in:locopt 3df $output_data/$fname/OUTPUT _3d nc DATA_3D_AV_NETCDF in:locopt 3df $output_data/$fname/OUTPUT _3d_av nc DATA_PRT_NETCDF in:locopt:pe prtf $output_data/$fname/OUTPUT _prt nc # #---------------------------------------------------------------------------- # List of output-files #---------------------------------------------------------------------------- BINOUT out:loc:flpe restart $base_data/$fname/RESTART _d3d PARTICLE_RESTART_DATA_OUT out:loc:flpe prt#:prtf $base_data/$fname/RESTART _rprt # RUN_CONTROL out:loc:tr d3# $base_data/$fname/MONITORING _rc RUN_CONTROL out:loc:tra d3f $base_data/$fname/MONITORING _rc HEADER out:loc:tr d3# $base_data/$fname/MONITORING _header HEADER out:loc:tra d3f $base_data/$fname/MONITORING _header CPU_MEASURES out:loc:tr d3# $base_data/$fname/MONITORING _cpu CPU_MEASURES out:loc:tra d3f $base_data/$fname/MONITORING _cpu # DATA_1D_PR_NETCDF out:loc pr# $output_data/$fname/OUTPUT _pr nc DATA_1D_PR_NETCDF out:loc prf $output_data/$fname/OUTPUT _pr nc DATA_1D_SP_NETCDF out:loc sp# $output_data/$fname/OUTPUT _sp nc DATA_1D_SP_NETCDF out:loc spf $output_data/$fname/OUTPUT _sp nc DATA_1D_TS_NETCDF out:loc ts# $output_data/$fname/OUTPUT _ts nc DATA_1D_TS_NETCDF out:loc tsf $output_data/$fname/OUTPUT _ts nc DATA_1D_PTS_NETCDF out:loc pts# $output_data/$fname/OUTPUT _pts nc DATA_1D_PTS_NETCDF out:loc ptsf $output_data/$fname/OUTPUT _pts nc DATA_2D_XY_NETCDF out:loc xy#:xyf $output_data/$fname/OUTPUT _xy nc DATA_2D_XY_AV_NETCDF out:loc xy#:xyf $output_data/$fname/OUTPUT _xy_av nc DATA_2D_XZ_NETCDF out:loc xz#:xzf $output_data/$fname/OUTPUT _xz nc DATA_2D_XZ_AV_NETCDF out:loc xz#:xzf $output_data/$fname/OUTPUT _xz_av nc DATA_2D_YZ_NETCDF out:loc yz#:yzf $output_data/$fname/OUTPUT _yz nc DATA_2D_YZ_AV_NETCDF out:loc yz#:yzf $output_data/$fname/OUTPUT _yz_av nc DATA_3D_NETCDF out:loc 3d#:3df $output_data/$fname/OUTPUT _3d nc DATA_3D_AV_NETCDF out:loc 3d#:3df $output_data/$fname/OUTPUT _3d_av nc DATA_MASK_01_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m01 nc DATA_MASK_01_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m01_av nc DATA_MASK_02_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m02 nc DATA_MASK_02_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m02_av nc DATA_MASK_03_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m03 nc DATA_MASK_03_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m03_av nc DATA_MASK_04_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m04 nc DATA_MASK_04_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m04_av nc DATA_MASK_05_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m05 nc DATA_MASK_05_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m05_av nc DATA_MASK_06_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m06 nc DATA_MASK_06_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m06_av nc DATA_MASK_07_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m07 nc DATA_MASK_07_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m07_av nc DATA_MASK_08_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m08 nc DATA_MASK_08_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m08_av nc DATA_MASK_09_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m09 nc DATA_MASK_09_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m09_av nc DATA_MASK_10_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m10 nc DATA_MASK_10_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m10_av nc DATA_MASK_11_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m11 nc DATA_MASK_11_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m11_av nc DATA_MASK_12_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m12 nc DATA_MASK_12_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m12_av nc DATA_MASK_13_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m13 nc DATA_MASK_13_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m13_av nc DATA_MASK_14_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m14 nc DATA_MASK_14_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m14_av nc DATA_MASK_15_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m15 nc DATA_MASK_15_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m15_av nc DATA_MASK_16_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m16 nc DATA_MASK_16_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m16_av nc DATA_MASK_17_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m17 nc DATA_MASK_17_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m17_av nc DATA_MASK_18_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m18 nc DATA_MASK_18_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m18_av nc DATA_MASK_19_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m19 nc DATA_MASK_19_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m19_av nc DATA_MASK_20_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m20 nc DATA_MASK_20_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m20_av nc DATA_PRT_NETCDF out:loc:pe prt#:prtf $output_data/$fname/OUTPUT _prt nc DATA_DVR out:loc:pe dvr $output_data/$fname/OUTPUT _dvr # DVRP_LOG out:loc:tr dv# $base_data/$fname/MONITORING _dvrp_log DVRP_LOG out:loc:tra dvf $base_data/$fname/MONITORING _dvrp_log PARTICLE_INFO out:loc:tr pt# $base_data/$fname/MONITORING _prt_info PARTICLE_INFO out:loc:tra ptf $base_data/$fname/MONITORING _prt_info PARTICLE_DATA out:loc:flpe prt#:prtf $base_data/$fname/OUTPUT _prt_dat # A BLANK LINE MUST FOLLOW