Index: palm/trunk/DOC/app/chapter_3.6.html
===================================================================
--- palm/trunk/DOC/app/chapter_3.6.html	(revision 82)
+++ palm/trunk/DOC/app/chapter_3.6.html	(revision 83)
@@ -1,6 +1,5 @@
 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
 <html><head>
-<meta http-equiv="CONTENT-TYPE" content="text/html; charset=windows-1252"><title>PALM
-chapter 3.6</title> <meta name="GENERATOR" content="StarOffice 7 (Win32)"> <meta name="AUTHOR" content="Siegfried Raasch"> <meta name="CREATED" content="20040809;10583400"> <meta name="CHANGED" content="20041112;15013624"> <meta name="KEYWORDS" content="parallel LES model"> <style>
+<meta http-equiv="CONTENT-TYPE" content="text/html; charset=windows-1252"><title>PALM chapter 3.6</title> <meta name="GENERATOR" content="StarOffice 7 (Win32)"> <meta name="AUTHOR" content="Siegfried Raasch"> <meta name="CREATED" content="20040809;10583400"> <meta name="CHANGED" content="20041112;15013624"> <meta name="KEYWORDS" content="parallel LES model"> <style>
 <!--
 @page { size: 21cm 29.7cm }
@@ -22,6 +21,5 @@
 are copied to
 directories on the local host corresponding to the specifications
-in the configuration file (in this case the file attribute <a href="http://www.muk.uni-hannover.de/institut/software/mrun_beschreibung.html#tr">tr</a>
-does not cause transfer to another computer). </p>
+in the configuration file (in this case the file attribute<span style="font-family: Courier New,Courier,monospace;"> tr&nbsp;</span>does not cause transfer to another computer). </p>
 <p style="line-height: 100%;">Since model runs usually
 require large
Index: palm/trunk/DOC/app/chapter_4.0.html
===================================================================
--- palm/trunk/DOC/app/chapter_4.0.html	(revision 82)
+++ palm/trunk/DOC/app/chapter_4.0.html	(revision 83)
@@ -1,11 +1,9 @@
 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
 <html><head>
-<meta http-equiv="CONTENT-TYPE" content="text/html; charset=windows-1252"><title>PALM
-chapter 4.0</title> <meta name="GENERATOR" content="StarOffice 7 (Win32)"> <meta name="AUTHOR" content="Siegfried Raasch"> <meta name="CREATED" content="20040809;14214479"> <meta name="CHANGED" content="20041112;15151993"> <meta name="KEYWORDS" content="parallel LES model"> <style>
+<meta http-equiv="CONTENT-TYPE" content="text/html; charset=windows-1252"><title>PALM chapter 4.0</title> <meta name="GENERATOR" content="StarOffice 7 (Win32)"> <meta name="AUTHOR" content="Siegfried Raasch"> <meta name="CREATED" content="20040809;14214479"> <meta name="CHANGED" content="20041112;15151993"> <meta name="KEYWORDS" content="parallel LES model"> <style>
 <!--
 @page { size: 21cm 29.7cm }
 -->
 </style></head>
-
 <body style="direction: ltr;" lang="en-US"><h2 style="line-height: 100%;"><font size="4">4.0
 Steering parameters</font></h2>
@@ -21,7 +19,7 @@
 </p><p style="line-height: 100%;">These data are
 assigned with the help of
-so-called ?&ldquo;NAMELIST-driven input&rdquo;? (FORTRAN -
+so-called&nbsp;&ldquo;NAMELIST-driven input&rdquo; (FORTRAN -
 NAMELIST &ndash;
-input). The ?gew&auml;hlten? values of the model parameters are
+input). The chosen values of the model parameters are
 written
 into an ASCII file with fixed format, which is expected by the model as
Index: palm/trunk/DOC/app/chapter_4.1.html
===================================================================
--- palm/trunk/DOC/app/chapter_4.1.html	(revision 82)
+++ palm/trunk/DOC/app/chapter_4.1.html	(revision 83)
@@ -559,6 +559,5 @@
 </td> <td style="vertical-align: top;">R</td>
 <td style="vertical-align: top;"><span style="font-style: italic;">1.0</span></td> <td style="vertical-align: top;"> <p>Horizontal grid
-spacing along the x-direction (in m).&nbsp; </p> <p>Along
-x-direction only a constant grid spacing is allowed.</p> </td>
+spacing along the y-direction (in m).&nbsp; </p> <p>Along y-direction only a constant grid spacing is allowed.</p> </td>
 </tr> <tr> <td style="vertical-align: top;">
 <p><a name="dz"></a><b>dz</b></p>
Index: palm/trunk/DOC/app/chapter_4.6.html
===================================================================
--- palm/trunk/DOC/app/chapter_4.6.html	(revision 82)
+++ palm/trunk/DOC/app/chapter_4.6.html	(revision 83)
@@ -578,5 +578,5 @@
 </td> <td style="vertical-align: middle;" width="16%">
 <p><i>1.0</i></p> </td> <td style="vertical-align: middle;" width="57%"> <p>Horizontal
-grid spacing along the x-direction (in m). <br> </p> </td>
+grid spacing along the y-direction (in m). <br> </p> </td>
 </tr> <tr> <td style="vertical-align: middle;" width="15%"> <p><a href="chapter_4.1.html#dz"><b>dz</b></a></p>
 </td> <td style="vertical-align: middle;" width="5%">
Index: palm/trunk/DOC/app/chapter_5.0.html
===================================================================
--- palm/trunk/DOC/app/chapter_5.0.html	(revision 82)
+++ palm/trunk/DOC/app/chapter_5.0.html	(revision 83)
@@ -1,6 +1,5 @@
 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
 <html><head>
-<meta http-equiv="CONTENT-TYPE" content="text/html; charset=windows-1252"><title>PALM
-chapter 5.0</title> <meta name="GENERATOR" content="StarOffice 7 (Win32)"> <meta name="AUTHOR" content="Siegfried Raasch"> <meta name="CREATED" content="20041103;12380720"> <meta name="CHANGED" content="20041123;15532356"> <meta name="KEYWORDS" content="parallel LES model"> <style>
+<meta http-equiv="CONTENT-TYPE" content="text/html; charset=windows-1252"><title>PALM chapter 5.0</title> <meta name="GENERATOR" content="StarOffice 7 (Win32)"> <meta name="AUTHOR" content="Siegfried Raasch"> <meta name="CREATED" content="20041103;12380720"> <meta name="CHANGED" content="20041123;15532356"> <meta name="KEYWORDS" content="parallel LES model"> <style>
 <!--
 @page { size: 21cm 29.7cm }
@@ -19,15 +18,8 @@
 local host. Alternatively, <span style="font-weight: bold;">mrun</span>
 can also be used to start PALM on the local host in interactive mode or
-as a batch job.</font><p style="line-height: 100%;"></p><p style="line-height: 100%;"><font color="#000000"><span style="font-weight: bold; text-decoration: underline;">Requirements</span></font></p><p style="line-height: 100%;"><font color="#000000">The
+as a batch job (if a queueing system like NQS, PBS, or LoadLeveler is available).</font><p style="line-height: 100%;"></p><p style="line-height: 100%;"><font color="#000000"><span style="font-weight: bold; text-decoration: underline;">Requirements</span></font></p><p style="line-height: 100%;"><font color="#000000">The
 installation and operation of PALM requires at mimimum (on both, the
-local and the remote host, unless stated otherwise):</font></p><ol><li><font color="#000000">The AT&amp;T Korn-shell (ksh) must be
-available under<span style="font-family: Courier New,Courier,monospace;"> </span></font><font style="font-family: Courier New,Courier,monospace;" color="#000000">/bin/ksh</font><font color="#000000">.
-Most of the current Linux distributions are using the public domain
-Korn-shell (pdksh). The PALM scripts <span style="font-weight: bold;">mrun</span> and <span style="font-weight: bold;">mbuild</span> do not work
-with the pdksh! Please replace it by the AT&amp;T ksh. If the
-AT&amp;T ksh path is different from<span style="font-family: Courier New,Courier,monospace;"> </span></font><font style="font-family: Courier New,Courier,monospace;" color="#000000">/bin/ksh</font><font color="#000000">,
-please modify the first lines in <span style="font-weight: bold;">mrun</span>
-and <span style="font-weight: bold;">mbuild</span>,
-respectively.</font></li><li><font color="#000000">The
+local and the remote host, unless stated otherwise):</font></p><ol><li><font color="#000000">The Korn-shell (AT&amp;T ksh or public domain ksh) must be
+available under<span style="font-family: Courier New,Courier,monospace;"> </span></font><font style="font-family: Courier New,Courier,monospace;" color="#000000">/bin/ksh</font><font color="#000000">.<span style="font-weight: bold;"></span><span style="font-weight: bold;"></span><span style="font-family: Courier New,Courier,monospace;"></span></font><font color="#000000"><span style="font-weight: bold;"></span><span style="font-weight: bold;"></span></font></li><li><font color="#000000">The
 NetCDF-library with version number not earlier than 3.6.0-p1 (for
 NetCDF, see under <a href="http://www.unidata.ucar.edu/software/netcdf/">www.unidata.ucar.edu</a>).</font></li><li><font color="#000000">A FORTRAN90/95 compiler.</font></li><li><font color="#000000">The Message Passing Interface (MPI), at
@@ -55,9 +47,6 @@
 as well as on the Linux cluster of IMUK (<span style="font-style: italic;">lcmuk</span>) and Tokyo
 Institute of Technology (<span style="font-style: italic;">lctit</span>).
-The strings given in brackets are the systems names under which <span style="font-weight: bold;">mrun</span> indentifies the
-different hosts. mrun should also work on other systems, but this
-requires some modifications in the scripts <span style="font-weight: bold;">mrun</span>, <span style="font-weight: bold;">mbuild</span>, and <span style="font-weight: bold;">subjob</span>. Future PALM
-versions will allow to configure the scripts for different kinds of
-systems by just using a configuration file.</font><p style="line-height: 100%;"><font color="#000000">The
+The strings given in brackets are the systems names (host identifiers) under which <span style="font-weight: bold;">mrun</span> identifies the
+different hosts.<br><br>You can also use <span style="font-weight: bold;">mrun</span>/PALM on other Linux-Cluster, IBM-AIX, or NEC-SX machines. See <a href="#configuration_for_other_machines">below</a> on how to configure <span style="font-weight: bold;">mrun</span> for other machines. However, these configurations currently (version 3.2a) allow to run PALM in interactive mode only.<br><span style="font-weight: bold;"></span><span style="font-weight: bold;"></span><span style="font-weight: bold;"></span><span style="font-weight: bold;"></span></font><p style="line-height: 100%;"><font color="#000000">The
 examples given in this chapter refer to an
 installation of PALM on an IMUK Linux workstation and the IBM-Regatta
@@ -136,6 +125,6 @@
 probably be restricted to the PALM developers.</span><p style="line-height: 100%;"></p><p style="line-height: 100%;"><font color="#000000"><span style="font-weight: bold; text-decoration: underline;">Package
 Configuration</span></font></p><p style="line-height: 100%;"><font color="#000000">To
-use the PALM scripts, the PATH variable has to be extended and the
-environment variable PALM_BIN has to be set (on local and remote host)
+use the PALM scripts, the <span style="font-family: Courier New,Courier,monospace;">PATH</span>-variable has to be extended and the
+environment variable<span style="font-family: Courier New,Courier,monospace;"> PALM_BIN </span>has to be set (on local and remote host)
 in the respective profile of the users default shell (e.g. in<span style="font-family: Courier New,Courier,monospace;"> .profile</span>,
 if<span style="font-family: Courier New,Courier,monospace;">
@@ -143,8 +132,6 @@
 PATH=$HOME/palm/current_version/trunk/SCRIPTS:$PATH</font><font color="#000000"><br><span style="font-family: Courier New,Courier,monospace;">export
 PALM_BIN=</span></font><font style="font-family: Courier New,Courier,monospace;" color="#000000">$HOME/palm/current_version/trunk/SCRIPTS</font></p><p style="line-height: 100%;"><font color="#000000">You
-may habe to login again in order to activate these settings.</font></p><font color="#000000">On the local and on the remote host, some
-small helper/utility programs have to be installed, which are e.g.
-later used by <span style="font-weight: bold;">mrun</span>
-or for PALM data postprocessing. The installation is done by <span style="font-weight: bold;">mbuild</span>. This script
+may have to login again in order to activate these settings.</font></p><font color="#000000">On the local and on the remote host, some
+small helper/utility programs have to be installed, which are&nbsp;later used by <span style="font-weight: bold;">mrun</span>&nbsp;e.g. for PALM data postprocessing. The installation is done by <span style="font-weight: bold;">mbuild</span>. This script
 requires a configuration file<span style="font-family: Courier New,Courier,monospace;">
 .mrun.config</span>, which will be also used by <span style="font-weight: bold;">mrun</span> in the
@@ -155,16 +142,16 @@
 typical installation parameters
 like compiler name, compiler options, etc.
-for a set of different remote hosts. Please edit this file, uncomment
+for a set of different (remote) hosts. Please edit this file, uncomment
 lines like</font><div style="margin-left: 40px; font-family: Courier New,Courier,monospace;">#%remote_username
 &nbsp;&lt;replace by your ... username&gt; &nbsp;
-&lt;remote-computer-shortcut&gt;</div><p style="line-height: 100%;"><font color="#000000">by
+&lt;host identifier&gt;</div><p style="line-height: 100%;"><font color="#000000">by
 removing the first hash (<span style="font-family: Courier New,Courier,monospace;">#</span>)
 character and replace the string "<span style="font-family: Courier New,Courier,monospace;">&lt;replace
 by ...&gt;</span>" by your username on the respective host
-given in the <span style="font-family: Courier New,Courier,monospace;">&lt;remote-computer-shortcut&gt;</span>.
+given in the <span style="font-family: Courier New,Courier,monospace;">&lt;host identifier&gt;</span>.
 You only have to uncomment lines for those hosts on which you intend to
 use PALM.</font></p><p style="line-height: 100%;"><font color="#000000">After modifying the configuration file, the
 respective executables are generated by executing</font></p><p style="line-height: 100%; margin-left: 40px; font-family: Courier New,Courier,monospace;"><font color="#000000">mbuild -u -h lcmuk<br>mbuild -u -h ibmh</font></p><p style="line-height: 100%;"><font color="#000000">The
-second call also copies the PALM scripts like <span style="font-weight: bold;">mrun</span> and <span style="font-weight: bold;">mbuild</span> to the remote
+second call also copies the PALM scripts (like <span style="font-weight: bold;">mrun</span> and <span style="font-weight: bold;">mbuild</span>) to the remote
 host.</font></p><p style="line-height: 100%;"></p><p style="line-height: 100%;"><font color="#000000"><span style="font-weight: bold; text-decoration: underline;">Pre-Compilation
 of PALM Code</span></font></p><font color="#000000">
@@ -265,10 +252,58 @@
 and time displayed at the top of the file header. <font color="#000000">If
 the file contents are identical, the installation is successfully
-completed.</font>
+completed.<br><br></font><p style="line-height: 100%;"></p><p style="line-height: 100%; font-weight: bold; text-decoration: underline;"><font color="#000000"><a name="configuration_for_other_machines"></a>Configuration for other machines</font></p><font color="#000000">Starting
+from version 3.2a, beside the default hosts (HLRN, etc.), PALM can also
+be installed and run on other Linux-Cluster-, IBM-AIX, or
+NEC-SX-systems. To configure PALM for a non-default host only requires
+to add some lines to the configuration file<span style="font-family: Courier New,Courier,monospace;"> .mrun.config</span>.<br><br>First,
+you have to define the host identifier (a string of arbitrary length)
+under which your local host shall be identified by adding a line<br><br></font><div style="margin-left: 40px;"><span style="font-family: Courier New,Courier,monospace;">%host_identifier &nbsp;&lt;hostname&gt; &nbsp;&lt;host identifier&gt;</span><br></div><br>to the configuration file (best to do this in the section where the other default host identifiers are defined). Here<span style="font-family: Courier New,Courier,monospace;"> &lt;hostname&gt; </span>must be the name of your local host as provided by the unix-command "<span style="font-family: Courier New,Courier,monospace;">hostname</span>". The first characters of<span style="font-family: Courier New,Courier,monospace;"> &lt;host identifier&gt; </span>have to be "<span style="font-family: Courier New,Courier,monospace;">lc</span>", if your system is (part of) a linux-cluster, "<span style="font-family: Courier New,Courier,monospace;">ibm</span>", or "<span style="font-family: Courier New,Courier,monospace;">nec</span>"
+in case of an IBM-AIX- or NEC-SX-system, respectively. For example, if
+you want to install on a linux-cluster, the line may read as<br><br><div style="margin-left: 40px;">%host_identifier &nbsp;foo &nbsp;lc_bar<br></div><br>In
+the second step, you have to give all informations neccessary to
+compile and run PALM on your local host by adding an additional section
+to the configuration file:<br><br><div style="margin-left: 40px; font-family: Courier New,Courier,monospace;">%remote_username&nbsp;&nbsp; &lt;1&gt;&nbsp; &nbsp; &nbsp; &lt;host identifier&gt; parallel<br>%tmp_user_catalog&nbsp; &lt;2&gt; &nbsp;&nbsp;&nbsp;&nbsp; &lt;host identifier&gt; parallel<br>%compiler_name&nbsp;&nbsp;&nbsp;&nbsp; &lt;3&gt; &nbsp;&nbsp;&nbsp;&nbsp; &lt;host identifier&gt; parallel<br>%compiler_name_ser &lt;4&gt; &nbsp;&nbsp;&nbsp;&nbsp; &lt;host identifier&gt; parallel<br>%cpp_options&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+&lt;5&gt; &nbsp; &nbsp; &nbsp;&lt;host identifier&gt;&nbsp;parallel<br>%netcdf_inc&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; &lt;6&gt; &nbsp;&nbsp;&nbsp;&nbsp; &lt;host identifier&gt; parallel<br>%netcdf_lib&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; &lt;7&gt; &nbsp;&nbsp;&nbsp;&nbsp; &lt;host identifier&gt; parallel<br>%fopts&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+&lt;8&gt; &nbsp;&nbsp;&nbsp; &nbsp;&lt;host identifier&gt; parallel<br>%lopts&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+&nbsp;&lt;9&gt; &nbsp; &nbsp; &nbsp;&lt;host identifier&gt; parallel<br></div><br>The
+section consists of four columns each separated by one or more blanks.
+The first column gives the name of the respective environment variable
+used by <span style="font-weight: bold;">mrun</span> and <span style="font-weight: bold;">mbuild</span>,
+while the second column defines its value. The third column has to be
+the host identifier as defined above, and the last column in each line
+must contain the string "<span style="font-family: Courier New,Courier,monospace;">parallel</span>".
+Otherwise, the respective line(s) will be interpreted as belonging to
+the setup for compiling and running a serial (non-parallel) version of
+PALM.<br><br>All brackets have to be replaced by the appropriate settings for your local host:<br><ul><li><span style="font-family: Courier New,Courier,monospace;">&lt;1&gt; </span>is the username on your LOCAL host</li><li><span style="font-family: Courier New,Courier,monospace;">&lt;2&gt; </span>is the temporary directory in which PALM runs will be carried out</li><li><span style="font-family: Courier New,Courier,monospace;">&lt;3&gt; </span>is the compiler name which generates parallel code</li><li><span style="font-family: Courier New,Courier,monospace;">&lt;4&gt; </span>is the compiler name for generating serial code</li><li><span style="font-family: Courier New,Courier,monospace;">&lt;5&gt; </span>are
+the preprocessor options to be invoked. In most of the cases, it will
+be neccessary to adjust the MPI data types to double precision by
+giving <span style="font-family: Courier New,Courier,monospace;">-DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION</span>. To switch on the NetCDF support, you also have to give <span style="font-family: Courier New,Courier,monospace;">-D__netcdf</span> and <span style="font-family: Courier New,Courier,monospace;">-D__netcdf_64bit</span> (if you like to have 64bit NetCDF output).</li><li><span style="font-family: Courier New,Courier,monospace;">&lt;6&gt; </span>is the compiler option for specifying the include path to search for the NetCDF module/include files</li><li><span style="font-family: Courier New,Courier,monospace;">&lt;7&gt; </span>are the linker options to search for the NetCDF library</li><li><span style="font-family: Courier New,Courier,monospace;">&lt;8&gt; </span>are the general compiler options to be used. You should allways switch on double precision (e.g. <span style="font-family: Courier New,Courier,monospace;">-r8</span>) and code optimization (e.g. <span style="font-family: Courier New,Courier,monospace;">-O2</span>).</li><li><span style="font-family: Courier New,Courier,monospace;">&lt;9&gt; </span>are the linker options</li><li><span style="font-family: Courier New,Courier,monospace;">&lt;host identifier&gt; </span>is the host identifier as defined before</li></ul><br>A typical example may be:<br><div style="margin-left: 40px; font-family: Courier New,Courier,monospace;">%remote_username&nbsp;&nbsp;
+raasch &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp;
+&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp;lc_bar parallel<br>%tmp_user_catalog&nbsp;
+/tmp&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;lc_bar
+parallel<br>%compiler_name&nbsp;&nbsp;&nbsp;&nbsp;
+mpif90&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;lc_bar
+parallel<br>%compiler_name_ser
+ifort&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;lc_bar
+parallel<br>%cpp_options&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+-DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf:-D__netcdf_64bit&nbsp;&nbsp;
+lc_bar parallel<br>%netcdf_inc&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+-I:/usr/local/netcdf/include&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+lc_bar parallel<br>%netcdf_lib&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+-L/usr/local/netcdf/lib:-lnetcdf&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+lc_bar parallel<br>%fopts&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+-axW:-cpp:-openmp:-r8:-nbs &nbsp; &nbsp; &nbsp; &nbsp;&nbsp;
+&nbsp;&nbsp;&nbsp; lc_bar parallel<br>%lopts&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+-axW:-cpp:-openmp:-r8:-nbs:-Vaxlib&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;lc_bar
+parallel<br></div><br>Currently (version 3.2a), depending on the MPI
+version which is running on your local host, the options for the
+execution command (which may be <span style="font-family: Courier New,Courier,monospace;">mpirun</span> or <span style="font-family: Courier New,Courier,monospace;">mpiexec</span>)
+may have to be adjusted manually in the mrun-script. A future version
+will allow to give the respective settings in the configuration file.
 <p style="line-height: 100%;">If you have any problems
 with the PALM
 installation, the members of the PALM working group are pleased to
 help you. &nbsp; </p>
-<hr><p style="line-height: 100%;"><font color="#000080"><font color="#000080"><a href="chapter_4.6.html"><font color="#000080"><img src="left.gif" name="Grafik1" align="bottom" border="2" height="32" width="32"></font></a><a href="Inhaltsverzeichnis.html"><font color="#000080"><img src="up.gif" name="Grafik2" align="bottom" border="2" height="32" width="32"></font></a><a href="chapter_5.1.html"><font color="#000080"><img src="right.gif" name="Grafik3" align="bottom" border="2" height="32" width="32"></font></a></font></font></p>
+<hr><p style="line-height: 100%;"><font color="#000080"><font color="#000080"><a href="chapter_4.6.html"><font color="#000080"><img src="left.gif" name="Grafik1" align="bottom" border="2" height="32" width="32"></font></a><a href="index.html"><font color="#000080"><img style="border: 2px solid ; width: 32px; height: 32px;" alt="up" src="up.gif" name="Grafik2"></font></a><a href="chapter_5.1.html"><font color="#000080"><img src="right.gif" name="Grafik3" align="bottom" border="2" height="32" width="32"></font></a></font></font></p>
 <p style="line-height: 100%;"><i>Last
 change:&nbsp;</i> $Id$</p>
Index: palm/trunk/DOC/app/chapter_5.1.html
===================================================================
--- palm/trunk/DOC/app/chapter_5.1.html	(revision 82)
+++ palm/trunk/DOC/app/chapter_5.1.html	(revision 83)
@@ -5,5 +5,5 @@
 <meta content="Siegfried Raasch" name="AUTHOR"> <meta content="20041103;12395815" name="CREATED"> <meta content="20041119;12321236" name="CHANGED"> <meta content="parallel LES model" name="KEYWORDS"></head>
 <body style="direction: ltr;" lang="en-US"><h3>5.1
-Installation of new / other versions</h3>
+Installation of new / other versions, version update</h3>
 <p>The PALM&nbsp;group announces code revisions by emails
 send to the
@@ -12,5 +12,8 @@
 Details about new releases can be found in the
 <a href="../tec/technical_documentation.html">technical/numerical
-documentation</a>.</p><p>If you have previously checked out the most recent (at that time)  PALM version by using</p><p style="margin-left: 40px; font-family: Courier New,Courier,monospace;">svn checkout ...../palm/trunk trunk &nbsp; &nbsp; ,</p><p>you can easily make an update to the most recent PALM version by
+documentation</a>.</p><p>Generally,
+there are two ways of installing new / other versions. You can install
+a version from the list of available PALM releases or you can update
+your current installation with the newest developer version of PALM.</p><p>If you have previously checked out the most recent (at that time)  PALM developer version by using</p><p style="margin-left: 40px; font-family: Courier New,Courier,monospace;">svn checkout ...../palm/trunk trunk &nbsp; &nbsp; ,</p><p>you can easily make an update to the newest version by
 changing into
 the working directory<span style="font-family: Courier New,Courier,monospace;">
@@ -21,5 +24,5 @@
 The update may fail due&nbsp;the&nbsp;<span style="font-weight: bold;">subversion</span> rules, if
 you have modified the contents of<span style="font-family: Courier New,Courier,monospace;"> trunk</span>.
-In case of any conflicts, please refer to the <span style="font-weight: bold;">subversion</span>
+In case of any conflicts with the repository, please refer to the <span style="font-weight: bold;">subversion</span>
 documentation on how to remove them.&nbsp;In order to avoid such
 conflicts, modifications of the default PALM code should be omitted and
@@ -36,5 +39,5 @@
 <p>However, this would require to carry out again the complete
 installation process described in chapter 5.0. So far, differet
-versions of PALM cannot be used at the same time.</p><p>After
+versions of PALM cannot be used at the same time. The PALM releases from<span style="font-family: Courier New,Courier,monospace;"> palm/tags&nbsp;</span>never have to be updated with "<span style="font-family: Courier New,Courier,monospace;">svn update</span>", since these releases are frozen!</p><p>After
 updating the working copy, please check for any differences between
 your current configuration file (<span style="font-family: Courier New,Courier,monospace;">.mrun.config</span>)
@@ -50,5 +53,5 @@
 -u<br>mbuild</blockquote>
 <p>on all remote hosts listed in the configuration file<span style="font-family: Courier New,Courier,monospace;">
-.mrun.config</span>. </p>
+.mrun.config</span>.</p><p>You can use "subversion" for code comparison between the different versions. Also,&nbsp;modified code can be committed to the repository, but this is restricted to&nbsp;PALM developers. </p>
 <p>As a last step, a suitable test run should be carried out. It
 should
Index: palm/trunk/DOC/app/index.html
===================================================================
--- palm/trunk/DOC/app/index.html	(revision 82)
+++ palm/trunk/DOC/app/index.html	(revision 83)
@@ -148,5 +148,5 @@
 <p><span style="font-family: Thorndale;" lang="EN-GB">Current
 model
-version:&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 3.2<br>For date of last change see bottom line of each page. <o:p></o:p></span></p>
+version:&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 3.2a<br>For date of last change see bottom line of each page. <o:p></o:p></span></p>
 <div style="text-align: center;" class="MsoNormal" align="center"><span style="font-family: Thorndale;">
 <hr align="center" size="2" width="100%"></span></div>
@@ -212,6 +212,6 @@
 of the model <o:p></o:p></span></p>
 <p style="margin: 0cm 0cm 5.1pt 72pt;"><span style="font-family: Thorndale;"><a href="http://www.muk.uni-hannover.de/%7Eraasch/PALM_group/doc/app/chapter_5.1.html">5.1</a>
-Installation of <span class="SpellE">new</span><span class="SpellE"></span>
-<span class="SpellE">versions</span><o:p></o:p></span></p><font color="#000000">&nbsp;
+Installation of <span class="SpellE">new</span><span class="SpellE"></span> / other
+<span class="SpellE">versions, version update</span><o:p></o:p></span></p><font color="#000000">&nbsp;
 <br>
 &nbsp;
