Index: palm/trunk/TUTORIALS/cases/flow_around_cube_precursor/INPUT/flow_around_cube_precursor_p3d
===================================================================
--- palm/trunk/TUTORIALS/cases/flow_around_cube_precursor/INPUT/flow_around_cube_precursor_p3d	(revision 4098)
+++ palm/trunk/TUTORIALS/cases/flow_around_cube_precursor/INPUT/flow_around_cube_precursor_p3d	(revision 4222)
@@ -1,84 +1,88 @@
+!-------------------------------------------------------------------------------
+!-- INITIALIZATION PARAMETER NAMELIST
+!   Documentation: https://palm.muk.uni-hannover.de/trac/wiki/doc/app/inipar
+!-------------------------------------------------------------------------------
 &initialization_parameters
-   !-- grid setup
-      nx = 39,
-      ny = 39,
-      nz = 40,
+!
+!-- grid parameters
+!-------------------------------------------------------------------------------
+    nx                         = 39, ! Number of gridboxes in x-direction (nx+1)
+    ny                         = 39, ! Number of gridboxes in y-direction (ny+1)
+    nz                         = 40, ! Number of gridboxes in z-direction (nz)
 
-      dx = 2.0,
-      dy = 2.0,
-      dz = 2.0,
+    dx                         = 2.0, ! Size of single gridbox in x-direction
+    dy                         = 2.0, ! Size of single gridbox in y-direction
+    dz                         = 2.0, ! Size of single gridbox in z-direction
+!
+!-- initialization
+!-------------------------------------------------------------------------------
+    initializing_actions       = 'set_1d-model_profiles', ! initial conditions
 
-   !-- pressure solver
-      fft_method = 'temperton-algorithm',     ! fast, but restrictions apply
+    end_time_1d                =  86400.0, ! integration time of 1D model
+    dt_run_control_1d          =   3600.0, ! interval of run-control output
+                                           ! of 1D model
 
-   !-- init-action
-      initializing_actions = 'set_1d-model_profiles',
+    ug_surface                 = 1.0, ! u-comp of geostrophic wind at surface
+    vg_surface                 = 0.0, ! v-comp of geostrophic wind at surface
 
-   !-- advection schemes
-      momentum_advec = 'ws-scheme',           ! default advection scheme
-      scalar_advec   = 'ws-scheme',
+    neutral                    = .T., ! strictly neutral flow
+!
+!-- mode
+!-------------------------------------------------------------------------------
+    dp_external                = .T.,         ! use horizontal pressure gradient
+    dpdxy                      = -0.00003, 0.0, ! set pressure gradient along x
+!
+!-- physics
+!-------------------------------------------------------------------------------
+    omega                      = 0.0, ! no Coriolis force
+!
+!-- boundary conditions
+!-------------------------------------------------------------------------------
+    bc_uv_t                    = 'neumann', ! free-slip boundary condition
 
-   !-- wind speed setup
-      ug_surface = 1.0,
-      vg_surface = 0.0,
+!
+!-- numerics
+!-------------------------------------------------------------------------------
+    fft_method                 = 'temperton-algorithm', ! build-in fft method
 
-   !-- temperature setup
-      neutral = .T.,                          ! strictly neutral flow
+/ ! end of initialization parameter namelist
 
-   !-- boundary conditions
-      bc_uv_t = 'neumann',                    ! free-slip boundary condition
+!-------------------------------------------------------------------------------
+!-- RUNTIME PARAMETER NAMELIST
+!   Documentation: https://palm.muk.uni-hannover.de/trac/wiki/doc/app/d3par
+!-------------------------------------------------------------------------------
+&runtime_parameters
+!
+!-- run steering
+!-------------------------------------------------------------------------------
+    end_time                   = 3600.0, ! simulation time of the 3D model
+    create_disturbances        = .T.,    ! randomly perturbate horiz. velocity
+!
+!-- data output
+!-------------------------------------------------------------------------------
+    dt_run_control             =   60.0, ! output interval for run control
+    dt_data_output             = 1800.0, ! output interval for general data
+    dt_dots                    =   60.0, ! output interval for time-series data
+    dt_dopr                    = 1800.0, ! output interval for profile data
 
-      roughness_length = 0.1,                 ! applies to all surfaces locally
+    data_output                = 'u', 'u_av',
+                                 'v', 'v_av',
+                                 'w', 'w_av',  ! 2d and/ 
+                                               ! or 3d 
+                                               ! output
 
-   !-- special methods
-      dp_external = .T.,                      ! use horizontal pressure gradient
-      dpdxy = -0.00003, 0.0,                  ! for forcing
+    data_output_pr             = '#u', 'u*2', 'wu', 'w*u*', 'w"u"',
+                                 '#v', 'v*2', 'wv', 'w*v*', 'w"v"',
+                                 'w', 'w*2',
+                                 'e', 'e*',
+                                 '#km',
+                                 '#l',      ! Profile 
+                                            ! output
 
-   !-- special setups
-      omega = 0.0,                            ! no Coriolis force
+    averaging_interval         = 1800.0, ! averaging interval general data
+    dt_averaging_input         =    6.0, ! averaging general data sampling rate
 
-      !1d-model setup
-      mixing_length_1d  = 'blackadar',        ! default
-      dissipation_1d    = 'detering',         ! default
-      end_time_1d       =  86400.0,           ! default
-      dt_run_control_1d =   3600.0,
-   /
+    averaging_interval_pr      =    0.0, ! averaging interval profile data
+    dt_averaging_input_pr      =    0.0, ! averaging profile data sampling rate
 
-
-&runtime_parameters
-   !-- simulation time
-      end_time                = 3600.0,
-      termination_time_needed =  900.0,
-
-   !-- others
-      create_disturbances = .T.,
-
-   !-- global output settings
-      skip_time_data_output =    0.0,
-      dt_data_output        = 1800.0,
-
-      averaging_interval    = 1800.0,
-      dt_averaging_input    =    6.0,
-
-   !-- time series / run control
-      dt_run_control        =  60.0,
-      dt_dots               =  60.0,
-
-   !-- profiles
-      skip_time_dopr        =    0.0,
-      dt_dopr               = 1800.0,
-      averaging_interval_pr =    0.0,
-      dt_averaging_input_pr =    0.0,
-
-      data_output_pr = '#u', 'u*2', 'wu', 'w*u*', 'w"u"',
-                       '#v', 'v*2', 'wv', 'w*v*', 'w"v"',
-                       'w', 'w*2',
-                       'e', 'e*',
-                       '#km',
-                       '#l',
-
-   !-- output variables
-      data_output = 'u', 'u_av',
-                    'v', 'v_av',
-                    'w', 'w_av',
-   /
+/ ! end of runtime parameter namelist
Index: palm/trunk/TUTORIALS/cases/flow_around_cube_precursor/MONITORING/flow_around_cube_precursor_rc
===================================================================
--- palm/trunk/TUTORIALS/cases/flow_around_cube_precursor/MONITORING/flow_around_cube_precursor_rc	(revision 4098)
+++ palm/trunk/TUTORIALS/cases/flow_around_cube_precursor/MONITORING/flow_around_cube_precursor_rc	(revision 4222)
@@ -34,10 +34,10 @@
 
  ******************************    --------------------------------------------
- * PALM 6.0  Rev: 4096        *    atmosphere - run with 1D - prerun
+ * PALM 6.0  Rev: 4220        *    atmosphere - run with 1D - prerun
  ******************************    --------------------------------------------
 
- Date:               2019-07-15    Run:       e3_cube_pcr                       
- Time:                 15:36:54    Run-No.:   00
- Run on host:          gfortran
+ Date:               2019-09-09    Run:       flow_around_cube_precursor__gfortr
+ Time:                 10:50:42    Run-No.:   00
+ Run on host:        gfortran_d
  Number of PEs:               4    Processor grid (x,y): (   2,   2) calculated
  ------------------------------------------------------------------------------
@@ -203,6 +203,7 @@
  -------------------
 
-    Geograph. latitude  :   latitude  = 55.0 degr
-    Geograph. longitude :   longitude =  0.0 degr
+    Geograph. latitude  :   latitude  =  55.0 degr
+    Geograph. longitude :   longitude =   0.0 degr
+    Rotation angle      :   rotation_angle =   0.0 degr
     Angular velocity    :   omega  = 0.000E+00 rad/s
     Coriolis parameter  :   f      =  0.000000 1/s
@@ -262,63 +263,63 @@
 RUN  ITER. HH:MM:SS.SS    DT(E)     UMAX     VMAX     WMAX     U*    W*      THETA*     Z_I     ENERG.   DISTENERG    DIVOLD     DIVNEW     UMAX(KJI)    VMAX(KJI)    WMAX(KJI)   ADVECX   ADVECY   MGCYC
 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
-  0      0 00:00:00.00   0.7100D   1.0000D -0.2288D  0.1182  0.051  0.00   0.000E+00      0.  0.308E+00  0.103E-02  0.149E-01  0.217E-11   41  37  37   11   7  19    5  26   7    0.000    0.000       0
-  0     34 00:01:01.43   1.8400A   0.9778  -0.0971   0.0632  0.046  0.00   0.000E+00      0.  0.307E+00  0.208E-03  0.246E-04  0.438E-14   41  25  22    9  32  31    6  25  26    0.000    0.000       0
-  0     66 00:02:00.31   1.8400A   0.9788  -0.0841  -0.0554  0.042  0.00   0.000E+00      0.  0.308E+00  0.156E-03  0.166E-04  0.306E-14   40  24   3    8  31   9    7  37  29    0.000    0.000       0
-  0     99 00:03:01.03   1.8400A   0.9801  -0.0744  -0.0529  0.039  0.00   0.000E+00      0.  0.309E+00  0.149E-03  0.143E-04  0.272E-14   41  24  25    8  30  30    7  38   9    0.000    0.000       0
-  0    132 00:04:01.63   1.8300A   0.9815  -0.0658  -0.0488  0.036  0.00   0.000E+00      0.  0.310E+00  0.154E-03  0.131E-04  0.249E-14   41  25   7    6  28   0    6  14  13    0.000    0.000       0
-  0    164 00:05:00.19   1.8300A   0.9829  -0.0672  -0.0507  0.035  0.00   0.000E+00      0.  0.311E+00  0.162E-03  0.131E-04  0.249E-14   40  37  34    6  27  16    8  35   9    0.000    0.000       0
-  0    197 00:06:00.57   1.8300A   0.9845  -0.0660   0.0459  0.034  0.00   0.000E+00      0.  0.312E+00  0.175E-03  0.130E-04  0.249E-14   40  37  17    6  27  36    6  26  32    0.000    0.000       0
-  0    230 00:07:00.96   1.8300A   0.9862  -0.0695  -0.0479  0.033  0.00   0.000E+00      0.  0.313E+00  0.193E-03  0.131E-04  0.251E-14   40  36  39    9  16  28    7  34   7    0.000    0.000       0
-  0    263 00:08:01.05   1.8200A   0.9878  -0.0769   0.0487  0.032  0.00   0.000E+00      0.  0.314E+00  0.213E-03  0.136E-04  0.256E-14   40  36  21    9  15   7    6  26  27    0.000    0.000       0
-  0    296 00:09:01.11   1.8200A   0.9895  -0.0763   0.0478  0.032  0.00   0.000E+00      0.  0.315E+00  0.233E-03  0.144E-04  0.273E-14   40  35   2    9  15  26    6  26   4    0.000    0.000       0
-  0    329 00:10:01.18   1.8200A   0.9911   0.0733   0.0498  0.031  0.00   0.000E+00      0.  0.316E+00  0.256E-03  0.155E-04  0.287E-14   40  34  24    7  31  17    8  16  32    0.000    0.000       0
-  0    362 00:11:01.03   1.8100A   0.9928  -0.0779   0.0522  0.031  0.00   0.000E+00      0.  0.317E+00  0.284E-03  0.167E-04  0.307E-14   41  33   6    9  13   6    8  16  10    0.000    0.000       0
-  0    395 00:12:00.75   1.8100A   0.9945  -0.0771   0.0487  0.031  0.00   0.000E+00      0.  0.318E+00  0.316E-03  0.176E-04  0.326E-14   41  31  27    9  12  25    9  16  29    0.000    0.000       0
-  0    428 00:13:00.48   1.8100A   0.9961   0.0808  -0.0559  0.031  0.00   0.000E+00      0.  0.319E+00  0.354E-03  0.169E-04  0.307E-14   41  30   8    7  14   9    4  33   3    0.000    0.000       0
-  0    461 00:14:00.11   1.8000A   0.9978   0.0774  -0.0583  0.031  0.00   0.000E+00      0.  0.320E+00  0.404E-03  0.182E-04  0.333E-14   41  28  29    7  14  29    3  34  19    0.000    0.000       0
-  0    495 00:15:01.31   1.8000A   0.9995   0.0932  -0.0580  0.031  0.00   0.000E+00      0.  0.321E+00  0.467E-03  0.192E-04  0.350E-14   41  26   8    7  15   8    3  33  32    0.000    0.000       0
-  0    528 00:16:00.71   1.8000A   1.0013  -0.0988   0.0619  0.031  0.00   0.000E+00      0.  0.322E+00  0.536E-03  0.204E-04  0.379E-14   40  19  23    3  31  18    7  15  22    0.000    0.000       0
-  0    561 00:17:00.07   1.7900A   1.0030  -0.0917  -0.0631  0.032  0.00   0.000E+00      0.  0.323E+00  0.610E-03  0.215E-04  0.395E-14   40  17   1    4  30  34    7  30   4    0.000    0.000       0
-  0    595 00:18:00.93   1.7900A   1.0048  -0.1076   0.0726  0.032  0.00   0.000E+00      0.  0.324E+00  0.695E-03  0.235E-04  0.420E-14   40  17  23    4  32  10    7  15  19    0.000    0.000       0
-  0    628 00:19:00.00   1.7900A   1.0065  -0.1159   0.0813  0.033  0.00   0.000E+00      0.  0.325E+00  0.782E-03  0.254E-04  0.450E-14   40  18   5    5  31  25    8  16  38    0.000    0.000       0
-  0    662 00:20:00.86   1.7900A   1.0083  -0.1148   0.0770  0.034  0.00   0.000E+00      0.  0.326E+00  0.883E-03  0.282E-04  0.515E-14   40  23  28    5  27  13    7  14  15    0.000    0.000       0
-  0    696 00:21:01.41   1.7800A   1.0101  -0.1335   0.1027  0.035  0.00   0.000E+00      0.  0.327E+00  0.996E-03  0.317E-04  0.574E-14   41  31  10    5  26  28    4  30  39    0.000    0.000       0
-  0    729 00:22:00.15   1.7800A   1.0118  -0.1459   0.1166  0.036  0.00   0.000E+00      0.  0.328E+00  0.110E-02  0.346E-04  0.615E-14   41  31  31    6  26   4    8  12   8    0.000    0.000       0
-  0    763 00:23:00.67   1.7800A   1.0135  -0.1589   0.1174  0.037  0.00   0.000E+00      0.  0.329E+00  0.120E-02  0.379E-04  0.681E-14   41  34  16    9  10  17   10  12  27    0.000    0.000       0
-  0    797 00:24:00.98   1.7700A   1.0152  -0.1596  -0.1127  0.038  0.00   0.000E+00      0.  0.329E+00  0.129E-02  0.419E-04  0.752E-14   41  36   1    6  27  32    9   8   1    0.000    0.000       0
-  0    831 00:25:01.16   1.7700A   1.0170   0.1825   0.1338  0.040  0.00   0.000E+00      0.  0.330E+00  0.136E-02  0.486E-04  0.901E-14   40   4  28    7  28  36    8  23   0    0.000    0.000       0
-  0    865 00:26:01.34   1.7700A   1.0188   0.1985  -0.1499  0.041  0.00   0.000E+00      0.  0.331E+00  0.142E-02  0.544E-04  0.993E-14   41   3  12    7  29  12    7   7  38    0.000    0.000       0
-  0    899 00:27:01.40   1.7600A   1.0205  -0.1776   0.1332  0.043  0.00   0.000E+00      0.  0.331E+00  0.148E-02  0.595E-04  0.107E-13   40   5  37    7  26  35    7  30   0    0.000    0.000       0
-  0    933 00:28:01.24   1.7600A   1.0223  -0.1837   0.1510  0.044  0.00   0.000E+00      0.  0.332E+00  0.154E-02  0.654E-04  0.117E-13   40   6  22    6  10   8    7  30  16    0.000    0.000       0
-  0    967 00:29:01.08   1.7600A   1.0240  -0.2025   0.1669  0.044  0.00   0.000E+00      0.  0.332E+00  0.162E-02  0.687E-04  0.124E-13   41   4   6    7  26   1    7  30   7    0.000    0.000       0
-  0   1001 00:30:00.89   1.7500A   1.0258   0.1887   0.1568  0.045  0.00   0.000E+00      0.  0.332E+00  0.174E-02  0.709E-04  0.128E-13   40  39  32   10   5  16    7  30  24    0.000    0.000       0
-  0   1035 00:31:00.39   1.7500A   1.0277   0.1994   0.1803  0.045  0.00   0.000E+00      0.  0.333E+00  0.186E-02  0.767E-04  0.139E-13   40  36  14    4  13   0    9  39   3    0.000    0.000       0
-  0   1070 00:32:01.64   1.7500A   1.0296   0.2276   0.1703  0.046  0.00   0.000E+00      0.  0.333E+00  0.196E-02  0.870E-04  0.161E-13   40  29  31    4  15  14   10  34  20    0.000    0.000       0
-  0   1104 00:33:01.12   1.7400A   1.0317   0.2182   0.1820  0.046  0.00   0.000E+00      0.  0.334E+00  0.200E-02  0.968E-04  0.176E-13   40  28  10    9  17   0   16  22   1    0.000    0.000       0
-  0   1138 00:34:00.28   1.7400A   1.0341   0.2045   0.2240  0.046  0.00   0.000E+00      0.  0.334E+00  0.198E-02  0.103E-03  0.184E-13   40  27  29    5  17   6   17  23  23    0.000    0.000       0
-  0   1173 00:35:01.18   1.7400A   1.0367  -0.2251   0.2084  0.046  0.00   0.000E+00      0.  0.334E+00  0.198E-02  0.101E-03  0.176E-13   40  26  11    7  26  28   18  23   6    0.000    0.000       0
-  0   1207 00:36:00.11   1.7300A   1.0391  -0.2033   0.1913  0.045  0.00   0.000E+00      0.  0.335E+00  0.201E-02  0.949E-04  0.164E-13   40  27  33    5  26  39   19  22  29    0.000    0.000       0
-  0   1242 00:37:00.66   1.7300A   1.0412   0.1869   0.1732  0.044  0.00   0.000E+00      0.  0.335E+00  0.202E-02  0.952E-04  0.167E-13   41  28  16    8  32  37   10  20   6    0.000    0.000       0
-  0   1277 00:38:01.21   1.7300A   1.0428   0.1898   0.1855  0.043  0.00   0.000E+00      0.  0.336E+00  0.205E-02  0.985E-04  0.173E-13   41  30  39    9  13  24   17   3  27    0.000    0.000       0
-  0   1312 00:39:01.58   1.7200A   1.0442   0.2178  -0.1825  0.042  0.00   0.000E+00      0.  0.336E+00  0.212E-02  0.103E-03  0.180E-13   41  34  21    4  13  38    4   9  34    0.000    0.000       0
-  0   1346 00:40:00.06   1.7200A   1.0453   0.2313   0.1736  0.042  0.00   0.000E+00      0.  0.337E+00  0.219E-02  0.107E-03  0.190E-13   41  35   4    5  14  14   13  15  22    0.000    0.000       0
-  0   1381 00:41:00.26   1.7200A   1.0466   0.1968   0.1728  0.042  0.00   0.000E+00      0.  0.337E+00  0.226E-02  0.112E-03  0.200E-13   41  32  30    7  16  34   15  16   2    0.000    0.000       0
-  0   1416 00:42:00.46   1.7200A   1.0485  -0.1898   0.1820  0.042  0.00   0.000E+00      0.  0.338E+00  0.234E-02  0.120E-03  0.212E-13   40  30  16   12  39   6   10   6  34    0.000    0.000       0
-  0   1451 00:43:00.47   1.7100A   1.0510   0.1964   0.1628  0.042  0.00   0.000E+00      0.  0.338E+00  0.243E-02  0.118E-03  0.207E-13   40  30   1   12  28  33   22  30  35    0.000    0.000       0
-  0   1486 00:44:00.32   1.7100A   1.0539   0.2106  -0.1775  0.043  0.00   0.000E+00      0.  0.338E+00  0.254E-02  0.121E-03  0.212E-13   40  30  25    6  37  36    9  30  29    0.000    0.000       0
-  0   1521 00:45:00.03   1.7000A   1.0569  -0.2083  -0.1760  0.043  0.00   0.000E+00      0.  0.339E+00  0.260E-02  0.121E-03  0.211E-13   40  31  11    7   2  20    8  30   9    0.000    0.000       0
-  0   1557 00:46:01.23   1.7000A   1.0598  -0.2092   0.1472  0.043  0.00   0.000E+00      0.  0.339E+00  0.261E-02  0.121E-03  0.210E-13   40  32  38   10  32  29   17  28  23    0.000    0.000       0
-  0   1592 00:47:00.64   1.6900A   1.0628   0.1907  -0.1717  0.044  0.00   0.000E+00      0.  0.339E+00  0.264E-02  0.122E-03  0.212E-13   40  33  24   19  27  13    7   2  29    0.000    0.000       0
-  0   1628 00:48:01.48   1.6900A   1.0666   0.1855  -0.1635  0.044  0.00   0.000E+00      0.  0.340E+00  0.270E-02  0.125E-03  0.217E-13   40  34  13   19  28  36    6   2   9    0.000    0.000       0
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+  0   1998 00:58:00.97   1.6100A   1.1195   0.2385   0.1723  0.047  0.00   0.000E+00      0.  0.341E+00  0.433E-02  0.168E-03  0.288E-13   33  15  13    6  22  18   25  32  15    0.000    0.000       0
+  0   2035 00:59:00.32   1.6000A   1.1263   0.2174   0.1799  0.048  0.00   0.000E+00      0.  0.341E+00  0.429E-02  0.170E-03  0.289E-13   34   2   7    5  22  32   27  31  38    0.000    0.000       0
+  0   2073 01:00:01.20   1.6100A   1.1190   0.2027  -0.1989  0.049  0.00   0.000E+00      0.  0.341E+00  0.417E-02  0.159E-03  0.270E-13   33  15  34    4  24  10   12  22  38    0.000    0.000       0
Index: palm/trunk/TUTORIALS/cases/flow_around_cube_precursor/case_config.yml
===================================================================
--- palm/trunk/TUTORIALS/cases/flow_around_cube_precursor/case_config.yml	(revision 4098)
+++ palm/trunk/TUTORIALS/cases/flow_around_cube_precursor/case_config.yml	(revision 4222)
@@ -13,5 +13,5 @@
 
 significant_digits_for_netcdf_checks:
-  timeseries: 8
-  profiles: 8
-  other: 8
+  timeseries: 6
+  profiles: 6
+  other: 6
