Changeset 3298 for palm/trunk/UTIL/chemistry/gasphase_preproc/run_kpp4palm.ksh

Timestamp:

Oct 2, 2018 12:21:11 PM (6 years ago)

Author:

kanani

Message:

Merge chemistry branch at r3297 to trunk

File:

• palm/trunk/UTIL/chemistry/gasphase_preproc/run_kpp4palm.ksh (modified) (3 diffs)

palm/trunk/UTIL/chemistry/gasphase_preproc/run_kpp4palm.ksh

@@ -29 +29 @@
 # -----------------
 # $Id$ 
+#  passed $MECH insted of $DEFDIR to kpp4palm.ksh                   forkel  25. Sept. 2018
+#  re-activaded  choice of deindexing method and vector mode        forkel  June 2018
+# 
+# 2718 2018-01-02 08:49:38Z maronga
 # Initial revision
 # 
@@ -72 +76 @@
 cd ..
 
-# run kpp4palm with default Setup
-#    -d   DEFDIR=$OPTARG;;          # directory of definition files
-#    -i   DE_INDEX="YES";;          # if set, deindexing
-#    -f   DE_INDEX_FAST="YES";;     # if set, fast deindexing
-#    -k   KEEP="NO";;               # keep Working directory
-#    -o   OUTDIR=$OPTARG;;          # Output directory of Geneated Code
-#    -p   PREFIX=$OPTARG;;          # Name Prefix
-#    -s   KPP_SOLVER=$OPTARG;;      # Name Prefix
+# run kpp4palm/bin/kpp4palm.ksh with the following Setup
+#    -d   DEFDIR=$OPTARG;;          # directory of definition files 
+#                                     (passed as `pwd`/mechanisms/def_$MECH)
+#    -m   MECH="smog";;             # chemical mechanism 
+#                                     (smog, simple, simplep, cbm4, phstat, passive, passive1)
+#    -i   DE_INDEX=2;;              # deindexing method (0,1,2,3; 0=no deindexing)
+#    -v   MODE="-v";;               # vector mode on (not working completely yet)
+#    -l   VLEN=$OPTARG;;            # Set vector length (not working completely yet)
+#    -k   KEEP="NO";;               # if "yes" keep Working directory
+#    -u   UPDT="NO";;               # if "yes" update the existing f90 code in the def_MECH directory
+#                                   # Use "YES" with care as the existing sample file is overwritten
+#
+##   Further options (not passed as changing does not make sense to change these)
+##    -f   DE_INDEX_FAST="YES";;     # if set, fast deindexing
+##    -o   OUTDIR=$OPTARG;;          # Output directory of Generated Code
+##                                     (`pwd`/../../../SOURCE)
+##    -p   PREFIX=$OPTARG;;          # Name Prefix (chem_gasphase_mod)
+##    -s   KPP_SOLVER=$OPTARG;;      # Name Prefix (rosenbrock)
 
  
@@ -85 +99 @@
 # use smog mechnism as default
 MECH=smog
+DEIN=2
 
-while  getopts m:k  opt   # get options
+while  getopts m:i:kuvl:  opt   # get options
 do case $opt in
       m)   MECH=$OPTARG;;          # mechanism name as part of mechanisms/def_[mechanism_name]
 
+      i)   DEIN=$OPTARG;;          # deindexing method (0,1,2,3; 0=no deindexing)
+
       k)   KEEP="-k";;             # keep Working directory
 
+      u)   UPDT="-u";;             # update sample output file
+
+      v)   MODE="-v";;             # vector mode on 
+
+      c)   COPY="-c";;             # copy output to def_MECH
+
+      l)   VLEN=$OPTARG;;          # Set vector length
+
       \?)  print ${0##*/} "unknown option:" $OPTARG
-           print "USAGE: ${0##*/} [ -m mechanism_name] [ -k] "
+           print "USAGE: ${0##*/} [ -m mechanism_name] [ -i n (n=0,1,2,3)] [ -k] [ -u] [ -v] [ -l N (N=vector length)]"
            exit 1;;
    esac
 done
-echo $MECH
+echo Now do kpp4palm for $MECH
 
-kpp4palm.ksh -d `pwd`/mechanisms/def_$MECH $KEEP
+# kpp4palm.ksh -d `pwd`/mechanisms/def_$MECH -i $DEIN $KEEP $UPDT $MODE -l $VLEN
+kpp4palm.ksh -m $MECH -i $DEIN $KEEP $UPDT $MODE -l $VLEN