Index: palm/trunk/DOC/app/chapter_5.0.html =================================================================== --- palm/trunk/DOC/app/chapter_5.0.html (revision 286) +++ palm/trunk/DOC/app/chapter_5.0.html (revision 287) @@ -39,16 +39,14 @@ LoadLeveler (IBM-AIX) and NQS/PBS (Linux-Clusters, NEC-SX).
The examples given in this chapter refer to an -installation of PALM on an IMUK Linux workstation and the IBM-Regatta +installation of PALM on an IMUK Linux workstation and the SGI-ICE system of the HLRN used as remote host. They are just called local and @@ -151,6 +149,9 @@ given in the <host identifier>. You only have to uncomment lines for those hosts on which you intend to -use PALM.
After modifying the configuration file, the -respective executables are generated by executing
mbuild -u -h lcmuk
mbuild -u -h ibmh
The +use PALM.
Beside the default configuration file .mrun.config.default, the directory trunk/SCRIPTS contains additional configuration files which are already adjusted for special hosts: .mrun.config.imuk can be used at Hannover University, .mrun.config.riam can +be used at the Research Institute of Applied Mechanics, Kyushu +University. These files have to be edited in the same way as described +above.
After modifying the configuration file, the +respective executables are generated by executing
mbuild -u -h lcmuk
mbuild -u -h lcsgih
The second call also copies the PALM scripts (like mrun and mbuild) to the remote host.
Pre-Compilation @@ -174,7 +175,7 @@ stored on the remote computer in the default directory ~/palm/current_version/MAKE_DEPOSITORY.
The -pre-compilation for the remote host (here the IBM-Regatta of HLRN) is +pre-compilation for the remote host (here the SGI-ICE system of HLRN) is done by
mbuild +-h lcsgih
mbuild will prompt some queries, which must all be @@ -209,5 +210,5 @@ test run can now be started by executing the command -
mrun -d example_cbl -h ibmh -K parallel -X 8 -T 8 -t 500 -q cdev -r “d3# pr#”+
mrun -d example_cbl -h lcsgih -K parallel -X 8 -T 8 -t 500 -q testq -r “d3# pr#”This specific run will be carried out on 8 PEs and is allowed to use up to 500 seconds @@ -224,5 +225,5 @@ current workload of the remote host. Provided that it is executed immediately and that all things work as designed, the job protocol of -this run will appear under the file name ~/job_queue/ibmh_example no +this run will appear under the file name ~/job_queue/lcsgih_example no more than a few minutes later. The content of this file should be carefully examined for any error messages.
@@ -240,10 +241,10 @@ contents of file
-~/palm/current_version/JOBS/example_cbl/MONITORING/ibmh_example_rc
+~/palm/current_version/JOBS/example_cbl/MONITORING/lcsgih_example_rc
with those of the example result file which can be found under trunk/INSTALL/example_cbl_rc., e.g. by using the standard diff command:
diff - JOBS/example_cbl/MONITORING/ibmh_example_cbl_rc + JOBS/example_cbl/MONITORING/lcsgih_example_cbl_rc trunk/INSTALL/example_cbl_rc
where it is assumed that your working directory is Index: palm/trunk/SOURCE/data_output_dvrp.f90 =================================================================== --- palm/trunk/SOURCE/data_output_dvrp.f90 (revision 286) +++ palm/trunk/SOURCE/data_output_dvrp.f90 (revision 287) @@ -93,5 +93,5 @@ CHARACTER (LEN=6) :: output_variable INTEGER :: c_mode, c_size_x, c_size_y, c_size_z, dvrp_nop, dvrp_not, & - gradient_normals, i, ip, j, jp, k, l, m, n, n_isosurfave, & + gradient_normals, i, ip, j, jp, k, l, m, n, n_isosurface, & n_slicer, nn, section_mode, vn INTEGER, DIMENSION(:), ALLOCATABLE :: p_c, p_t @@ -99,7 +99,6 @@ LOGICAL, DIMENSION(:), ALLOCATABLE :: dvrp_mask - REAL(4) :: center(3), distance, slicer_position, surface_value, & - tmp_alpha, tmp_alpha_w, tmp_b, tmp_c_alpha, tmp_g, tmp_norm, & - tmp_pos, tmp_r, tmp_t, tmp_th + REAL(4) :: slicer_position, tmp_alpha, tmp_alpha_w, tmp_b, tmp_c_alpha, & + tmp_g, tmp_norm, tmp_pos, tmp_r, tmp_t, tmp_th REAL(4), DIMENSION(:), ALLOCATABLE :: psize, p_x, p_y, p_z REAL(4), DIMENSION(:,:,:), ALLOCATABLE :: local_pf