Index: palm/trunk/INSTALL/example_cbl_rc
===================================================================
--- palm/trunk/INSTALL/example_cbl_rc	(revision 1096)
+++ palm/trunk/INSTALL/example_cbl_rc	(revision 1097)
@@ -1,9 +1,9 @@
 
  ***************************         ------------------------------------------
- * PALM 3.8a  Rev: 874:878 *         atmosphere - 3D - run without 1D - prerun
+ * PALM 3.9  Rev: 1096     *         atmosphere - 3D - run without 1D - prerun
  ***************************         ------------------------------------------
 
- Date:              18-04-12         Run:       example_cbl         
- Time:              17:11:42         Run-No.:   00
+ Date:              03-02-13         Run:       example_cbl         
+ Time:              04:25:21         Run-No.:   00
  Run on host:         lcsgih
  Number of PEs:            8         Processor grid (x,y): (  2,  4) calculated
@@ -42,5 +42,4 @@
  Subdomain size (x,y,z):        (    20,     10,     42)
 
- Subdomains have equal size
 
 
@@ -70,5 +69,5 @@
     Prandtl-Layer between bottom surface and first computational u,v-level:
 
-       zp =  25.00 m   z0 = 0.1000 m   kappa = 0.40
+       zp =  25.00 m   z0 = 0.1000 m   z0h = 0.10000 m   kappa = 0.40
        Rif value range:    -5.00 <= rif <=  1.00
 
@@ -95,5 +94,5 @@
 
     1D-Profiles:
-       Output format: NetCDF 64bit offset                     
+       Output format: netCDF 64bit offset                     
 
 
@@ -104,5 +103,5 @@
 
     2D-Arrays:
-       Output format: NetCDF 64bit offset                     
+       Output format: netCDF 64bit offset                     
 
 
@@ -120,5 +119,5 @@
 
     2D-Arrays(time-averaged):
-       Output format: NetCDF 64bit offset                     
+       Output format: netCDF 64bit offset                     
 
 
@@ -132,5 +131,5 @@
 
     Time series:
-       Output format: NetCDF 64bit offset                     
+       Output format: netCDF 64bit offset                     
 
        Output every                 0.00 s
Index: palm/trunk/SCRIPTS/.mrun.config.tatara
===================================================================
--- palm/trunk/SCRIPTS/.mrun.config.tatara	(revision 1097)
+++ palm/trunk/SCRIPTS/.mrun.config.tatara	(revision 1097)
@@ -0,0 +1,157 @@
+#$Id: .mrun.config.kiaps 1043 2012-11-06 06:18:09Z raasch $
+#column 1          column 2                                   column 3
+#name of variable  value of variable (~ must not be used)     scope
+#----------------------------------------------------------------------------
+%mainprog          palm.f90
+%base_directory    $HOME/palm/current_version
+%base_data         ~/palm/current_version/JOBS
+%source_path       $base_directory/trunk/SOURCE
+%add_source_path   $base_directory/USER_CODE/$fname
+%depository_path   $base_directory/MAKE_DEPOSITORY
+%use_makefile      true
+#
+# Enter your own host below by adding another line containing in the second
+# column your hostname (as provided by the unix command "hostname") and in the
+# third column the host identifier. Depending on your operating system, the
+# first characters of the host identifier should be "lc" (Linux cluster), "ibm"
+# (IBM-AIX), or "nec" (NEC-SX), respectively.
+#
+%host_identifier   sugoka*     lckyut
+%host_identifier   pcj*        lckyut
+#
+#
+# The next block contains all informations for compiling the PALM code
+# and for generating and running the PALM executable using MPI. Replace all
+# required paths (given in <>) by the respective paths valid on your host.
+#
+%tmp_user_catalog  /tmp                                          lckyut parallel
+%compiler_name     mpifrt                                        lckyut parallel
+%compiler_name_ser frt                                           lckyut parallel
+%cpp_options       -Cpp:-DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf:-D__netcdf4   lckyut parallel
+%netcdf_inc        -I:/usr/local/netcdf/4.1.1/include                 lckyut parallel
+%netcdf_lib        -L/usr/local/netcdf/4.1.1/lib:-lnetcdf:-lnetcdff   lckyut parallel
+%mopts             -j:4                                          lckyut parallel
+%memory            1000                                          lckyut parallel
+%fopts             -Kfast:-Ad:-Knooptmsg                         lckyut parallel
+%lopts             -Kfast:-Ad                                    lckyut parallel
+%scp_port          22                                            lckyut parallel
+%remote_username   <replace by your tatara username>             lckyut parallel
+#             
+%write_binary        true                             restart
+#
+#----------------------------------------------------------------------------
+# INPUT-commands, executed before running PALM - lines must start with "IC:" 
+#----------------------------------------------------------------------------
+#IC:
+#
+#----------------------------------------------------------------------------
+# ERROR-commands - executed when program terminates abnormally
+#----------------------------------------------------------------------------
+EC:[[ \$locat = execution ]]  &&  cat  RUN_CONTROL
+EC:pwd; ls -al
+#
+#----------------------------------------------------------------------------
+# OUTPUT-commands - executed when program terminates normally
+#----------------------------------------------------------------------------
+#
+# Combine 1D- and 3D-profile output (these files are not usable for plotting)
+OC:[[ -f LIST_PROFIL_1D     ]]  &&  cat  LIST_PROFIL_1D  >>  LIST_PROFILE
+OC:[[ -f LIST_PROFIL        ]]  &&  cat  LIST_PROFIL     >>  LIST_PROFILE
+#
+# Combine all particle information files
+OC:[[ -f PARTICLE_INFOS/_0000 ]]  &&  cat  PARTICLE_INFOS/* >> PARTICLE_INFO
+#
+#----------------------------------------------------------------------------
+# List of input-files
+#----------------------------------------------------------------------------
+PARIN                    in:job        d3#      $base_data/$fname/INPUT    _p3d
+PARIN                    in:job        d3f      $base_data/$fname/INPUT    _p3df
+TOPOGRAPHY_DATA          in:locopt     d3#:d3f  $base_data/$fname/INPUT    _topo
+BININ                    in:loc:flpe   d3f      $base_data/$fname/RESTART  _d3d
+PARTICLE_RESTART_DATA_IN in:loc:flpe   prtf     $base_data/$fname/RESTART  _rprt
+DATA_1D_PR_NETCDF        in:locopt     prf      $base_data/$fname/OUTPUT   _pr     nc
+DATA_1D_SP_NETCDF        in:locopt     spf      $base_data/$fname/OUTPUT   _sp     nc
+DATA_1D_TS_NETCDF        in:locopt     tsf      $base_data/$fname/OUTPUT   _ts     nc
+DATA_1D_PTS_NETCDF       in:locopt     ptsf     $base_data/$fname/OUTPUT   _pts    nc
+DATA_2D_XY_NETCDF        in:locopt     xyf      $base_data/$fname/OUTPUT   _xy     nc
+DATA_2D_XY_AV_NETCDF     in:locopt     xyf      $base_data/$fname/OUTPUT   _xy_av  nc
+DATA_2D_XZ_NETCDF        in:locopt     xzf      $base_data/$fname/OUTPUT   _xz     nc
+DATA_2D_YZ_NETCDF        in:locopt     yzf      $base_data/$fname/OUTPUT   _yz     nc
+DATA_3D_NETCDF           in:locopt     3df      $base_data/$fname/OUTPUT   _3d     nc
+DATA_PRT_NETCDF          in:locopt:pe  prtf     $base_data/$fname/OUTPUT   _prt
+#
+#----------------------------------------------------------------------------
+# List of output-files
+#----------------------------------------------------------------------------
+BINOUT                    out:loc:flpe restart   $base_data/$fname/RESTART  _d3d
+PARTICLE_RESTART_DATA_OUT out:loc:flpe prt#:prtf $base_data/$fname/RESTART  _rprt
+#
+RUN_CONTROL       out:loc:tr   d3#     $base_data/$fname/MONITORING  _rc
+RUN_CONTROL       out:loc:tra  d3f     $base_data/$fname/MONITORING  _rc
+HEADER            out:loc:tr   d3#     $base_data/$fname/MONITORING  _header
+HEADER            out:loc:tra  d3f     $base_data/$fname/MONITORING  _header
+CPU_MEASURES      out:loc:tr   d3#     $base_data/$fname/MONITORING  _cpu
+CPU_MEASURES      out:loc:tra  d3f     $base_data/$fname/MONITORING  _cpu
+#
+DATA_1D_PR_NETCDF    out:loc:tr   pr#:prf   $base_data/$fname/OUTPUT  _pr     nc
+DATA_1D_SP_NETCDF    out:loc:tr   sp#:spf   $base_data/$fname/OUTPUT  _sp     nc
+DATA_1D_TS_NETCDF    out:loc:tr   ts#:tsf   $base_data/$fname/OUTPUT  _ts     nc
+DATA_1D_PTS_NETCDF   out:loc:tr   pts#:ptsf $base_data/$fname/OUTPUT  _pts    nc
+DATA_2D_XY_NETCDF    out:loc:tr   xy#:xyf   $base_data/$fname/OUTPUT  _xy     nc
+DATA_2D_XY_AV_NETCDF out:loc:tr   xy#:xyf   $base_data/$fname/OUTPUT  _xy_av  nc
+DATA_2D_XZ_NETCDF    out:loc:tr   xz#:xzf   $base_data/$fname/OUTPUT  _xz     nc
+DATA_2D_XZ_AV_NETCDF out:loc:tr   xz#:xzf   $base_data/$fname/OUTPUT  _xz_av  nc
+DATA_2D_YZ_NETCDF    out:loc:tr   yz#:yzf   $base_data/$fname/OUTPUT  _yz     nc
+DATA_2D_YZ_AV_NETCDF out:loc:tr   yz#:yzf   $base_data/$fname/OUTPUT  _yz_av  nc
+DATA_3D_NETCDF       out:loc:tr   3d#:3df   $base_data/$fname/OUTPUT  _3d     nc
+DATA_3D_AV_NETCDF    out:loc:tr   3d#:3df   $base_data/$fname/OUTPUT  _3d_av  nc
+DATA_MASK_01_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m01     nc
+DATA_MASK_01_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m01_av  nc
+DATA_MASK_02_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m02     nc
+DATA_MASK_02_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m02_av  nc
+DATA_MASK_03_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m03     nc
+DATA_MASK_03_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m03_av  nc
+DATA_MASK_04_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m04     nc
+DATA_MASK_04_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m04_av  nc
+DATA_MASK_05_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m05     nc
+DATA_MASK_05_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m05_av  nc
+DATA_MASK_06_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m06     nc
+DATA_MASK_06_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m06_av  nc
+DATA_MASK_07_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m07     nc
+DATA_MASK_07_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m07_av  nc
+DATA_MASK_08_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m08     nc
+DATA_MASK_08_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m08_av  nc
+DATA_MASK_09_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m09     nc
+DATA_MASK_09_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m09_av  nc
+DATA_MASK_10_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m10     nc
+DATA_MASK_10_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m10_av  nc
+DATA_MASK_11_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m11     nc
+DATA_MASK_11_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m11_av  nc
+DATA_MASK_12_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m12     nc
+DATA_MASK_12_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m12_av  nc
+DATA_MASK_13_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m13     nc
+DATA_MASK_13_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m13_av  nc
+DATA_MASK_14_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m14     nc
+DATA_MASK_14_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m14_av  nc
+DATA_MASK_15_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m15     nc
+DATA_MASK_15_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m15_av  nc
+DATA_MASK_16_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m16     nc
+DATA_MASK_16_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m16_av  nc
+DATA_MASK_17_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m17     nc
+DATA_MASK_17_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m17_av  nc
+DATA_MASK_18_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m18     nc
+DATA_MASK_18_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m18_av  nc
+DATA_MASK_19_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m19     nc
+DATA_MASK_19_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m19_av  nc
+DATA_MASK_20_NETCDF    out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m20     nc
+DATA_MASK_20_AV_NETCDF out:loc:tr ma#:maf   $base_data/$fname/OUTPUT  _m20_av  nc
+DATA_PRT_NETCDF      out:loc:pe   prt#:prtf $base_data/$fname/OUTPUT  _prt    nc
+DATA_PRT_NETCDF      out:loc:trpe prt#:prtf $base_data/$fname/OUTPUT  _prt    nc
+DATA_DVR             out:loc:trpe dvr       $base_data/$fname/OUTPUT  _dvr 
+#
+DVRP_LOG          out:loc:tr   dv#       $base_data/$fname/MONITORING  _dvrp_log
+DVRP_LOG          out:loc:tra  dvf       $base_data/$fname/MONITORING  _dvrp_log
+PARTICLE_INFO     out:loc:tr   pt#       $base_data/$fname/MONITORING  _prt_info
+PARTICLE_INFO     out:loc:tra  ptf       $base_data/$fname/MONITORING  _prt_info
+PARTICLE_DATA     out:loc:flpe prt#:prtf $base_data/$fname/OUTPUT      _prt_dat
+# A BLANK LINE MUST FOLLOW
