[2696] | 1 | !> @file src/io.f90 |
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| 2 | !------------------------------------------------------------------------------! |
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[2718] | 3 | ! This file is part of the PALM model system. |
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[2696] | 4 | ! |
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[2718] | 5 | ! PALM is free software: you can redistribute it and/or modify it under the |
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| 6 | ! terms of the GNU General Public License as published by the Free Software |
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| 7 | ! Foundation, either version 3 of the License, or (at your option) any later |
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[2696] | 8 | ! version. |
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| 9 | ! |
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[2718] | 10 | ! PALM is distributed in the hope that it will be useful, but WITHOUT ANY |
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| 11 | ! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR |
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| 12 | ! A PARTICULAR PURPOSE. See the GNU General Public License for more details. |
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[2696] | 13 | ! |
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| 14 | ! You should have received a copy of the GNU General Public License along with |
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| 15 | ! PALM. If not, see <http://www.gnu.org/licenses/>. |
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| 16 | ! |
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[2718] | 17 | ! Copyright 2017-2018 Leibniz Universitaet Hannover |
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| 18 | ! Copyright 2017-2018 Deutscher Wetterdienst Offenbach |
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[2696] | 19 | !------------------------------------------------------------------------------! |
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| 20 | ! |
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| 21 | ! Current revisions: |
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| 22 | ! ----------------- |
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| 23 | ! |
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| 24 | ! |
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| 25 | ! Former revisions: |
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| 26 | ! ----------------- |
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| 27 | ! $Id: io.f90 2718 2018-01-02 08:49:38Z hellstea $ |
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| 28 | ! Initial revision |
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| 29 | ! |
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| 30 | ! |
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| 31 | ! |
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| 32 | ! Authors: |
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| 33 | ! -------- |
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| 34 | ! @author Eckhard Kadasch |
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| 35 | ! |
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| 36 | ! Description: |
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| 37 | ! ------------ |
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| 38 | !> The io module contains the functions needed to read and write netCDF data in |
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| 39 | !> INIFOR. |
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| 40 | !------------------------------------------------------------------------------! |
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| 41 | MODULE io |
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| 42 | |
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| 43 | USE control |
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| 44 | USE defs, & |
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| 45 | ONLY: DATE, SNAME, PATH, PI, dp, TO_RADIANS, TO_DEGREES, VERSION |
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| 46 | USE netcdf |
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| 47 | USE types |
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| 48 | USE util, & |
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| 49 | ONLY: reverse, str |
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| 50 | |
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| 51 | IMPLICIT NONE |
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| 52 | |
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| 53 | CONTAINS |
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| 54 | |
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| 55 | SUBROUTINE netcdf_define_variable(var, ncid) |
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| 56 | |
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| 57 | TYPE(nc_var), INTENT(INOUT) :: var |
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| 58 | INTEGER, INTENT(IN) :: ncid |
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| 59 | |
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| 60 | CALL check(nf90_def_var(ncid, var % name, NF90_FLOAT, var % dimids(1:var % ndim), var % varid)) |
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| 61 | CALL check(nf90_put_att(ncid, var % varid, "standard_name", var % standard_name)) |
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| 62 | CALL check(nf90_put_att(ncid, var % varid, "long_name", var % long_name)) |
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| 63 | CALL check(nf90_put_att(ncid, var % varid, "units", var % units)) |
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| 64 | CALL check(nf90_put_att(ncid, var % varid, "lod", var % lod)) |
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| 65 | CALL check(nf90_put_att(ncid, var % varid, "source", var % source)) |
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| 66 | CALL check(nf90_put_att(ncid, var % varid, "_FillValue", NF90_FILL_REAL)) |
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| 67 | |
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| 68 | END SUBROUTINE netcdf_define_variable |
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| 69 | |
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| 70 | |
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| 71 | SUBROUTINE netcdf_get_dimensions(var, ncid) |
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| 72 | |
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| 73 | TYPE(nc_var), INTENT(INOUT) :: var |
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| 74 | INTEGER, INTENT(IN) :: ncid |
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| 75 | INTEGER :: i |
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| 76 | CHARACTER(SNAME) :: null |
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| 77 | |
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| 78 | ! Remember dimension lenghts for NetCDF writing routine |
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| 79 | DO i = 1, var % ndim |
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| 80 | CALL check(nf90_inquire_dimension(ncid, var % dimids(i), & |
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| 81 | name = null, & |
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| 82 | len = var % dimlen(i) ) ) |
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| 83 | END DO |
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| 84 | |
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| 85 | END SUBROUTINE netcdf_get_dimensions |
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| 86 | |
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| 87 | |
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| 88 | !------------------------------------------------------------------------------! |
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| 89 | ! Description: |
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| 90 | ! ------------ |
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| 91 | !> This routine initializes Inifor. This includes parsing command-line |
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| 92 | !> arguments, setting the names of the input and output file names as well as |
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| 93 | !> the name of the input namelist and, subsequently, reading in and setting grid |
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| 94 | !> parameters for the PALM-4U computational grid. |
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| 95 | !------------------------------------------------------------------------------! |
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| 96 | SUBROUTINE parse_command_line_arguments( start_date, hhl_file, & |
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| 97 | soiltyp_file, static_driver_file, input_path, output_file, & |
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| 98 | namelist_file, ug, vg, p0, z0, mode ) |
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| 99 | |
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| 100 | CHARACTER(LEN=PATH), INTENT(INOUT) :: hhl_file, soiltyp_file, & |
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| 101 | static_driver_file, input_path, output_file, namelist_file |
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| 102 | CHARACTER(LEN=SNAME), INTENT(INOUT) :: mode |
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| 103 | REAL(dp), INTENT(INOUT) :: ug, vg, p0, z0 |
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| 104 | CHARACTER(LEN=DATE), INTENT(INOUT) :: start_date |
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| 105 | |
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| 106 | CHARACTER(LEN=PATH) :: option, arg |
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| 107 | INTEGER :: arg_count, i |
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| 108 | |
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| 109 | arg_count = COMMAND_ARGUMENT_COUNT() |
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| 110 | IF (arg_count .GT. 0) THEN |
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| 111 | |
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| 112 | ! Every option should have an argument. |
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| 113 | IF ( MOD(arg_count, 2) .NE. 0 ) THEN |
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| 114 | message = "Syntax error in command line." |
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| 115 | CALL abort('parse_command_line_arguments', message) |
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| 116 | END IF |
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| 117 | |
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| 118 | message = "The -clon and -clat command line options are depricated. " // & |
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| 119 | "Please remove them form your inifor command and specify the " // & |
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| 120 | "location of the PALM-4U origin either" // NEW_LINE(' ') // & |
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| 121 | " - by setting the namelist parameters 'origin_lon' and 'origin_lat, or'" // NEW_LINE(' ') // & |
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| 122 | " - by providing a static driver netCDF file via the -static command-line option." |
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| 123 | |
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| 124 | ! Loop through option/argument pairs. |
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| 125 | DO i = 1, arg_count, 2 |
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| 126 | |
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| 127 | CALL GET_COMMAND_ARGUMENT( i, option ) |
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| 128 | CALL GET_COMMAND_ARGUMENT( i+1, arg ) |
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| 129 | |
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| 130 | SELECT CASE( TRIM(option) ) |
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| 131 | |
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| 132 | CASE( '-date' ) |
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| 133 | start_date = TRIM(arg) |
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| 134 | |
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| 135 | ! Elevation of the PALM-4U domain above sea level |
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| 136 | CASE( '-z0' ) |
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| 137 | READ(arg, *) z0 |
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| 138 | |
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| 139 | ! surface pressure, at z0 |
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| 140 | CASE( '-p0' ) |
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| 141 | READ(arg, *) p0 |
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| 142 | |
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| 143 | ! surface pressure, at z0 |
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| 144 | CASE( '-ug' ) |
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| 145 | READ(arg, *) ug |
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| 146 | |
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| 147 | ! surface pressure, at z0 |
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| 148 | CASE( '-vg' ) |
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| 149 | READ(arg, *) vg |
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| 150 | |
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| 151 | ! Domain centre geographical longitude |
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| 152 | CASE( '-clon' ) |
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| 153 | CALL abort('parse_command_line_arguments', message) |
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| 154 | !READ(arg, *) lambda_cg |
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| 155 | !lambda_cg = lambda_cg * TO_RADIANS |
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| 156 | |
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| 157 | ! Domain centre geographical latitude |
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| 158 | CASE( '-clat' ) |
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| 159 | CALL abort('parse_command_line_arguments', message) |
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| 160 | !READ(arg, *) phi_cg |
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| 161 | !phi_cg = phi_cg * TO_RADIANS |
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| 162 | |
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| 163 | CASE( '-path' ) |
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| 164 | input_path = TRIM(arg) |
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| 165 | |
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| 166 | CASE( '-hhl' ) |
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| 167 | hhl_file = TRIM(arg) |
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| 168 | |
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| 169 | CASE( '-static' ) |
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| 170 | static_driver_file = TRIM(arg) |
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| 171 | |
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| 172 | CASE( '-soil' ) |
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| 173 | soiltyp_file = TRIM(arg) |
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| 174 | |
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| 175 | CASE( '-o' ) |
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| 176 | output_file = TRIM(arg) |
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| 177 | |
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| 178 | CASE( '-n' ) |
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| 179 | namelist_file = TRIM(arg) |
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| 180 | |
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| 181 | ! Initialization mode: 'profile' / 'volume' |
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| 182 | CASE( '-mode' ) |
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| 183 | mode = TRIM(arg) |
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| 184 | |
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| 185 | SELECT CASE( TRIM(mode) ) |
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| 186 | |
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| 187 | CASE( 'profile' ) |
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| 188 | |
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| 189 | CASE DEFAULT |
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| 190 | message = "Mode '" // TRIM(mode) // "' is not supported. " //& |
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| 191 | "Currently, '-mode profile' is the only supported option. " //& |
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| 192 | "Select this one or omit the -mode option entirely." |
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| 193 | CALL abort( 'parse_command_line_arguments', message ) |
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| 194 | END SELECT |
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| 195 | |
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| 196 | CASE DEFAULT |
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| 197 | message = "unknown option '" // TRIM(option(2:)) // "'." |
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| 198 | CALL abort('parse_command_line_arguments', message) |
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| 199 | |
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| 200 | END SELECT |
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| 201 | |
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| 202 | END DO |
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| 203 | |
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| 204 | ELSE |
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| 205 | |
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| 206 | message = "No arguments present, using default input and output files" |
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| 207 | CALL report('parse_command_line_arguments', message) |
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| 208 | |
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| 209 | END IF |
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| 210 | |
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| 211 | END SUBROUTINE parse_command_line_arguments |
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| 212 | |
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| 213 | |
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| 214 | !------------------------------------------------------------------------------! |
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| 215 | ! Description: |
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| 216 | ! ------------ |
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| 217 | !> This routine initializes the Inifor output file, i.e. the PALM-4U |
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| 218 | !> initializing and forcing data as a NetCDF file. |
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| 219 | !> |
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| 220 | !> Besides writing metadata, such as global attributes, coordinates, variables, |
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| 221 | !> in the NetCDF file, various NetCDF IDs are saved for later, when Inifor |
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| 222 | !> writes the actual data. |
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| 223 | !------------------------------------------------------------------------------! |
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| 224 | SUBROUTINE setup_netcdf_dimensions(output_file, palm_grid) |
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| 225 | |
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| 226 | TYPE(nc_file), INTENT(INOUT) :: output_file |
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| 227 | TYPE(grid_definition), INTENT(IN) :: palm_grid |
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| 228 | |
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| 229 | CHARACTER (LEN=SNAME) :: date |
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| 230 | INTEGER :: ncid, nx, ny, nz, nt, dimids(3), dimvarids(3) |
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| 231 | REAL(dp) :: z0 |
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| 232 | |
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| 233 | ! Create the NetCDF file. NF90_CLOBBER selects overwrite mode. |
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| 234 | CALL check(nf90_create(TRIM(output_file % name), OR(NF90_CLOBBER, NF90_HDF5), ncid)) |
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| 235 | |
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| 236 | ! |
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| 237 | !------------------------------------------------------------------------------ |
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| 238 | !- Section 1: Write global NetCDF attributes |
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| 239 | !------------------------------------------------------------------------------ |
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| 240 | CALL date_and_time(date) |
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| 241 | CALL check(nf90_put_att(ncid, NF90_GLOBAL, 'title', 'PALM input file for scenario ...')) |
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| 242 | CALL check(nf90_put_att(ncid, NF90_GLOBAL, 'institution', 'Deutscher Wetterdienst, Offenbach')) |
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| 243 | CALL check(nf90_put_att(ncid, NF90_GLOBAL, 'author', 'Eckhard Kadasch, eckhard.kadasch@dwd.de')) |
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| 244 | CALL check(nf90_put_att(ncid, NF90_GLOBAL, 'history', 'Created on '//date)) |
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| 245 | CALL check(nf90_put_att(ncid, NF90_GLOBAL, 'references', '--')) |
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| 246 | CALL check(nf90_put_att(ncid, NF90_GLOBAL, 'comment', '--')) |
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| 247 | CALL check(nf90_put_att(ncid, NF90_GLOBAL, 'origin_lat', '--')) |
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| 248 | CALL check(nf90_put_att(ncid, NF90_GLOBAL, 'origin_lon', '--')) |
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| 249 | CALL check(nf90_put_att(ncid, NF90_GLOBAL, 'inifor_version', TRIM(VERSION))) |
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| 250 | CALL check(nf90_put_att(ncid, NF90_GLOBAL, 'palm_version', '--')) |
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| 251 | |
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| 252 | ! |
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| 253 | !------------------------------------------------------------------------------ |
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| 254 | !- Section 2: Define NetCDF dimensions and coordinates |
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| 255 | !------------------------------------------------------------------------------ |
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| 256 | nt = SIZE(output_file % time) |
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| 257 | nx = palm_grid % nx |
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| 258 | ny = palm_grid % ny |
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| 259 | nz = palm_grid % nz |
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| 260 | z0 = palm_grid % z0 |
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| 261 | |
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| 262 | ! |
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| 263 | !------------------------------------------------------------------------------ |
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| 264 | !- Section 2a: Define dimensions for cell centers (scalars in soil and atmosph.) |
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| 265 | !------------------------------------------------------------------------------ |
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| 266 | dimids = (/0, 0, 0/) ! reset dimids |
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| 267 | CALL check( nf90_def_dim(ncid, "x", nx+1, dimids(1)) ) |
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| 268 | CALL check( nf90_def_dim(ncid, "y", ny+1, dimids(2)) ) |
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| 269 | CALL check( nf90_def_dim(ncid, "z", nz+1, dimids(3)) ) |
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| 270 | output_file % dimids_scl = dimids ! save dimids for later |
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| 271 | |
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| 272 | dimvarids = (/0, 0, 0/) ! reset dimvarids |
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| 273 | CALL check(nf90_def_var(ncid, "x", NF90_FLOAT, dimids(1), dimvarids(1))) |
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| 274 | CALL check(nf90_put_att(ncid, dimvarids(1), "standard_name", "x coordinate of cell centers")) |
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| 275 | CALL check(nf90_put_att(ncid, dimvarids(1), "units", "m")) |
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| 276 | |
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| 277 | CALL check(nf90_def_var(ncid, "y", NF90_FLOAT, dimids(2), dimvarids(2))) |
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| 278 | CALL check(nf90_put_att(ncid, dimvarids(2), "standard_name", "y coordinate of cell centers")) |
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| 279 | CALL check(nf90_put_att(ncid, dimvarids(2), "units", "m")) |
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| 280 | |
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| 281 | CALL check(nf90_def_var(ncid, "z", NF90_FLOAT, dimids(3), dimvarids(3))) |
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| 282 | CALL check(nf90_put_att(ncid, dimvarids(3), "standard_name", "z coordinate of cell centers")) |
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| 283 | CALL check(nf90_put_att(ncid, dimvarids(3), "units", "m")) |
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| 284 | output_file % dimvarids_scl = dimvarids ! save dimvarids for later |
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| 285 | |
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| 286 | ! overwrite third dimid with the one of depth |
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| 287 | CALL check(nf90_def_dim(ncid, "depth", SIZE(palm_grid % depths), dimids(3)) ) |
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| 288 | output_file % dimids_soil = dimids ! save dimids for later |
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| 289 | |
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| 290 | ! overwrite third dimvarid with the one of depth |
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| 291 | CALL check(nf90_def_var(ncid, "depth", NF90_FLOAT, output_file % dimids_soil(3), dimvarids(3))) |
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| 292 | CALL check(nf90_put_att(ncid, dimvarids(3), "standard_name", "depth_below_land")) |
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| 293 | CALL check(nf90_put_att(ncid, dimvarids(3), "positive", "down")) |
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| 294 | CALL check(nf90_put_att(ncid, dimvarids(3), "units", "m")) |
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| 295 | output_file % dimvarids_soil = dimvarids ! save dimvarids for later |
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| 296 | ! |
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| 297 | !------------------------------------------------------------------------------ |
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| 298 | !- Section 2b: Define dimensions for cell faces/velocities |
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| 299 | !------------------------------------------------------------------------------ |
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| 300 | dimids = (/0, 0, 0/) ! reset dimids |
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| 301 | CALL check(nf90_def_dim(ncid, "xu", nx, dimids(1)) ) |
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| 302 | CALL check(nf90_def_dim(ncid, "yv", ny, dimids(2)) ) |
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| 303 | CALL check(nf90_def_dim(ncid, "zw", nz, dimids(3)) ) |
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| 304 | output_file % dimids_vel = dimids ! save dimids for later |
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| 305 | |
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| 306 | dimvarids = (/0, 0, 0/) ! reset dimvarids |
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| 307 | CALL check(nf90_def_var(ncid, "xu", NF90_FLOAT, dimids(1), dimvarids(1))) |
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| 308 | CALL check(nf90_put_att(ncid, dimvarids(1), "standard_name", "x coordinate of cell faces")) |
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| 309 | CALL check(nf90_put_att(ncid, dimvarids(1), "units", "m")) |
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| 310 | |
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| 311 | CALL check(nf90_def_var(ncid, "yv", NF90_FLOAT, dimids(2), dimvarids(2))) |
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| 312 | CALL check(nf90_put_att(ncid, dimvarids(2), "standard_name", "y coordinate of cell faces")) |
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| 313 | CALL check(nf90_put_att(ncid, dimvarids(2), "units", "m")) |
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| 314 | |
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| 315 | CALL check(nf90_def_var(ncid, "zw", NF90_FLOAT, dimids(3), dimvarids(3))) |
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| 316 | CALL check(nf90_put_att(ncid, dimvarids(3), "standard_name", "z coordinate of cell faces")) |
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| 317 | CALL check(nf90_put_att(ncid, dimvarids(3), "units", "m")) |
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| 318 | output_file % dimvarids_vel = dimvarids ! save dimvarids for later |
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| 319 | |
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| 320 | ! |
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| 321 | !------------------------------------------------------------------------------ |
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| 322 | !- Section 2c: Define time dimension |
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| 323 | !------------------------------------------------------------------------------ |
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| 324 | CALL check(nf90_def_dim(ncid, "time", nt, output_file % dimid_time) ) |
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| 325 | CALL check(nf90_def_var(ncid, "time", NF90_FLOAT, & |
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| 326 | output_file % dimid_time, & |
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| 327 | output_file % dimvarid_time)) |
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| 328 | CALL check(nf90_put_att(ncid, output_file % dimvarid_time, "standard_name", "time")) |
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| 329 | CALL check(nf90_put_att(ncid, output_file % dimvarid_time, "long_name", "time")) |
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| 330 | CALL check(nf90_put_att(ncid, output_file % dimvarid_time, "units", "seconds since...")) |
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| 331 | |
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| 332 | CALL check(nf90_enddef(ncid)) |
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| 333 | |
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| 334 | ! |
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| 335 | !------------------------------------------------------------------------------ |
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| 336 | !- Section 3: Write grid coordinates |
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| 337 | !------------------------------------------------------------------------------ |
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| 338 | CALL check(nf90_put_var(ncid, output_file % dimvarids_scl(1), palm_grid%x)) |
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| 339 | CALL check(nf90_put_var(ncid, output_file % dimvarids_scl(2), palm_grid%y)) |
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| 340 | CALL check(nf90_put_var(ncid, output_file % dimvarids_scl(3), palm_grid%z)) |
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| 341 | |
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| 342 | CALL check(nf90_put_var(ncid, output_file % dimvarids_vel(1), palm_grid%xu)) |
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| 343 | CALL check(nf90_put_var(ncid, output_file % dimvarids_vel(2), palm_grid%yv)) |
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| 344 | CALL check(nf90_put_var(ncid, output_file % dimvarids_vel(3), palm_grid%zw)) |
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| 345 | |
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| 346 | ! TODO Read in soil depths from input file before this. |
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| 347 | CALL check(nf90_put_var(ncid, output_file % dimvarids_soil(3), palm_grid%depths)) |
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| 348 | |
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| 349 | ! Write time vector |
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| 350 | CALL check(nf90_put_var(ncid, output_file % dimvarid_time, output_file % time)) |
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| 351 | |
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| 352 | ! Close the file |
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| 353 | CALL check(nf90_close(ncid)) |
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| 354 | |
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| 355 | END SUBROUTINE setup_netcdf_dimensions |
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| 356 | |
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| 357 | |
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| 358 | SUBROUTINE setup_netcdf_variables(filename, output_variable_table) |
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| 359 | |
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| 360 | CHARACTER (LEN=*), INTENT(IN) :: filename |
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| 361 | TYPE(nc_var), INTENT(INOUT), TARGET :: output_variable_table(:) |
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| 362 | TYPE(nc_var), POINTER :: var |
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| 363 | INTEGER :: i, ncid |
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| 364 | |
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| 365 | message = "Initializing PALM-4U forcing file '" // TRIM(filename) // "'." |
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| 366 | CALL report('setup_netcdf_variables', message) |
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| 367 | |
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| 368 | CALL check(nf90_open(TRIM(filename), NF90_WRITE, ncid)) |
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| 369 | CALL check(nf90_redef(ncid)) |
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| 370 | |
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| 371 | DO i = 1, SIZE(output_variable_table) |
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| 372 | |
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| 373 | var => output_variable_table(i) |
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| 374 | |
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| 375 | IF ( var % to_be_processed ) THEN |
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| 376 | message = "Defining variable #" // TRIM(str(i)) // " '" // TRIM(var%name) // "'." |
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| 377 | CALL report('setup_netcdf_variables', message) |
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| 378 | |
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| 379 | CALL netcdf_define_variable(var, ncid) |
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| 380 | CALL netcdf_get_dimensions(var, ncid) |
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| 381 | END IF |
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| 382 | |
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| 383 | END DO |
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| 384 | |
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| 385 | CALL check(nf90_enddef(ncid)) |
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| 386 | CALL check(nf90_close(ncid)) |
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| 387 | |
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| 388 | message = "Forcing file '" // TRIM(filename) // "' initialized successfully." |
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| 389 | CALL report('setup_netcdf_variables', message) |
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| 390 | |
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| 391 | END SUBROUTINE setup_netcdf_variables |
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| 392 | |
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| 393 | |
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| 394 | !------------------------------------------------------------------------------! |
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| 395 | ! Description: |
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| 396 | ! ------------ |
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| 397 | !> This routine reads and returns all input variables of the given IO group |
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| 398 | !> It accomodates the data by allocating a container variable that represents a |
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| 399 | !> list of arrays of the same length as the groups variable list. (This list |
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| 400 | !> will typically contain one or two items.) After the container, its members |
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| 401 | !> are allocated one by one with the appropriate, possibly different, |
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| 402 | !> dimensions. |
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| 403 | !> |
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| 404 | !> The 'group' is an INTENT(INOUT) variable so that 'get_netcdf_variable()' can |
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| 405 | !> record netCDF IDs in the 'in_var_list()' member variable. |
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| 406 | !------------------------------------------------------------------------------! |
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| 407 | SUBROUTINE read_input_variables(group, iter, buffer) |
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| 408 | TYPE(io_group), INTENT(INOUT), TARGET :: group |
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| 409 | INTEGER, INTENT(IN) :: iter |
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| 410 | TYPE(container), ALLOCATABLE, INTENT(INOUT) :: buffer(:) |
---|
| 411 | INTEGER :: hour, buf_id |
---|
| 412 | TYPE(nc_var), POINTER :: input_var |
---|
| 413 | CHARACTER(LEN=PATH), POINTER :: input_file |
---|
| 414 | INTEGER :: ivar, nbuffers |
---|
| 415 | |
---|
| 416 | message = "Reading data for I/O group '" // TRIM(group % in_var_list(1) % name) // "'." |
---|
| 417 | CALL report('read_input_variables', message) |
---|
| 418 | |
---|
| 419 | input_file => group % in_files(iter) |
---|
| 420 | |
---|
| 421 | ! |
---|
| 422 | !------------------------------------------------------------------------------ |
---|
| 423 | !- Section 1: Load input buffers for accumulated variables |
---|
| 424 | !------------------------------------------------------------------------------ |
---|
| 425 | IF (group % kind == 'running average' .OR. & |
---|
| 426 | group % kind == 'accumulated') THEN ! radiation budgets, precipitation |
---|
| 427 | |
---|
| 428 | IF (SIZE(group % in_var_list) .GT. 1 ) THEN |
---|
| 429 | message = "I/O groups may not contain more than one " // & |
---|
| 430 | "accumulated variable. Group '" // TRIM(group % kind) //& |
---|
| 431 | "' contains " // & |
---|
| 432 | TRIM( str(SIZE(group % in_var_list)) ) // "." |
---|
| 433 | CALL abort('read_input_variables | accumulation', message) |
---|
| 434 | END IF |
---|
| 435 | |
---|
| 436 | ! use two buffer arrays |
---|
| 437 | nbuffers = 2 |
---|
| 438 | IF ( .NOT. ALLOCATED( buffer ) ) ALLOCATE( buffer(nbuffers) ) |
---|
| 439 | |
---|
| 440 | ! chose correct buffer array |
---|
| 441 | hour = iter - 1! hour of the day |
---|
| 442 | buf_id = select_buffer(hour) |
---|
| 443 | |
---|
| 444 | CALL run_control('time', 'read') |
---|
| 445 | IF ( ALLOCATED(buffer(buf_id) % array) ) DEALLOCATE(buffer(buf_id) % array) |
---|
| 446 | CALL run_control('time', 'alloc') |
---|
| 447 | |
---|
| 448 | input_var => group % in_var_list(1) |
---|
| 449 | buffer(buf_id) % array = get_netcdf_variable( input_file, input_var ) |
---|
| 450 | CALL report('read_input_variables', "Read accumulated " // TRIM(group % in_var_list(1) % name)) |
---|
| 451 | |
---|
| 452 | IF ( input_var % is_upside_down ) CALL reverse(buffer(buf_id) % array) |
---|
| 453 | CALL run_control('time', 'comp') |
---|
| 454 | |
---|
| 455 | !------------------------------------------------------------------------------ |
---|
| 456 | !- Section 2: Load input buffers for normal I/O groups |
---|
| 457 | !------------------------------------------------------------------------------ |
---|
| 458 | ELSE |
---|
| 459 | |
---|
| 460 | nbuffers = SIZE( group % in_var_list ) |
---|
| 461 | ALLOCATE( buffer(nbuffers) ) |
---|
| 462 | CALL run_control('time', 'alloc') |
---|
| 463 | |
---|
| 464 | DO ivar = 1, nbuffers |
---|
| 465 | |
---|
| 466 | input_var => group % in_var_list(ivar) |
---|
| 467 | |
---|
| 468 | ! Check wheather P or PP is present in input file |
---|
| 469 | IF (input_var % name == 'P') THEN |
---|
| 470 | input_var % name = TRIM( get_pressure_var(input_file) ) |
---|
| 471 | CALL run_control('time', 'read') |
---|
| 472 | END IF |
---|
| 473 | |
---|
| 474 | buffer(ivar) % array = get_netcdf_variable( input_file, input_var ) |
---|
| 475 | |
---|
| 476 | IF ( input_var % is_upside_down ) CALL reverse(buffer(ivar) % array) |
---|
| 477 | CALL run_control('time', 'comp') |
---|
| 478 | |
---|
| 479 | END DO |
---|
| 480 | END IF |
---|
| 481 | |
---|
| 482 | END SUBROUTINE read_input_variables |
---|
| 483 | |
---|
| 484 | |
---|
| 485 | INTEGER FUNCTION select_buffer(hour) |
---|
| 486 | INTEGER, INTENT(IN) :: hour |
---|
| 487 | INTEGER :: step |
---|
| 488 | |
---|
| 489 | select_buffer = 0 |
---|
| 490 | step = MODULO(hour, 3) + 1 |
---|
| 491 | |
---|
| 492 | SELECT CASE(step) |
---|
| 493 | CASE(1, 3) |
---|
| 494 | select_buffer = 1 |
---|
| 495 | CASE(2) |
---|
| 496 | select_buffer = 2 |
---|
| 497 | CASE DEFAULT |
---|
| 498 | message = "Invalid step '" // TRIM(str(step)) |
---|
| 499 | CALL abort('select_buffer', message) |
---|
| 500 | END SELECT |
---|
| 501 | END FUNCTION select_buffer |
---|
| 502 | |
---|
| 503 | |
---|
| 504 | !------------------------------------------------------------------------------! |
---|
| 505 | ! Description: |
---|
| 506 | ! ------------ |
---|
| 507 | !> Checks if the input_file contains the absolute pressure, 'P', or the pressure |
---|
| 508 | !> perturbation, 'PP', and returns the appropriate string. |
---|
| 509 | !------------------------------------------------------------------------------! |
---|
| 510 | CHARACTER(LEN=2) FUNCTION get_pressure_var(input_file) RESULT(var) |
---|
| 511 | CHARACTER(LEN=*) :: input_file |
---|
| 512 | INTEGER :: ncid, varid |
---|
| 513 | |
---|
| 514 | CALL check(nf90_open( TRIM(input_file), NF90_NOWRITE, ncid )) |
---|
| 515 | IF ( nf90_inq_varid( ncid, 'P', varid ) .EQ. NF90_NOERR ) THEN |
---|
| 516 | |
---|
| 517 | var = 'P' |
---|
| 518 | |
---|
| 519 | ELSE IF ( nf90_inq_varid( ncid, 'PP', varid ) .EQ. NF90_NOERR ) THEN |
---|
| 520 | |
---|
| 521 | var = 'PP' |
---|
| 522 | CALL report('get_pressure_var', 'Using PP instead of P') |
---|
| 523 | |
---|
| 524 | ELSE |
---|
| 525 | |
---|
| 526 | message = "Failed to read '" // TRIM(var) // & |
---|
| 527 | "' from file '" // TRIM(input_file) // "'." |
---|
| 528 | CALL abort('get_pressure_var', message) |
---|
| 529 | |
---|
| 530 | END IF |
---|
| 531 | |
---|
| 532 | CALL check(nf90_close(ncid)) |
---|
| 533 | |
---|
| 534 | END FUNCTION get_pressure_var |
---|
| 535 | |
---|
| 536 | |
---|
| 537 | FUNCTION get_netcdf_attribute(filename, attribute) RESULT(attribute_value) |
---|
| 538 | |
---|
| 539 | CHARACTER(LEN=*), INTENT(IN) :: filename, attribute |
---|
| 540 | REAL(dp) :: attribute_value |
---|
| 541 | |
---|
| 542 | INTEGER :: ncid |
---|
| 543 | |
---|
| 544 | IF ( nf90_open( TRIM(filename), NF90_NOWRITE, ncid ) == NF90_NOERR ) THEN |
---|
| 545 | |
---|
| 546 | CALL check(nf90_get_att(ncid, NF90_GLOBAL, TRIM(attribute), attribute_value)) |
---|
| 547 | |
---|
| 548 | ELSE |
---|
| 549 | |
---|
| 550 | message = "Failed to read '" // TRIM(attribute) // & |
---|
| 551 | "' from file '" // TRIM(filename) // "'." |
---|
| 552 | CALL abort('get_netcdf_attribute', message) |
---|
| 553 | |
---|
| 554 | END IF |
---|
| 555 | |
---|
| 556 | END FUNCTION get_netcdf_attribute |
---|
| 557 | |
---|
| 558 | |
---|
| 559 | |
---|
| 560 | FUNCTION get_netcdf_variable(in_file, in_var) RESULT(buffer) |
---|
| 561 | |
---|
| 562 | CHARACTER(LEN=PATH), INTENT(IN) :: in_file |
---|
| 563 | TYPE(nc_var), INTENT(INOUT) :: in_var |
---|
| 564 | REAL(dp), ALLOCATABLE :: buffer(:,:,:) |
---|
| 565 | INTEGER :: i, ncid, start(3) |
---|
| 566 | |
---|
| 567 | |
---|
| 568 | ! Read in_var NetCDF attributes |
---|
| 569 | IF ( nf90_open( TRIM(in_file), NF90_NOWRITE, ncid ) .EQ. NF90_NOERR .AND. & |
---|
| 570 | nf90_inq_varid( ncid, in_var % name, in_var % varid ) .EQ. NF90_NOERR ) THEN |
---|
| 571 | |
---|
| 572 | CALL check(nf90_get_att(ncid, in_var % varid, "long_name", in_var % long_name)) |
---|
| 573 | CALL check(nf90_get_att(ncid, in_var % varid, "units", in_var % units)) |
---|
| 574 | |
---|
| 575 | ! Read in_var NetCDF dimensions |
---|
| 576 | CALL check(nf90_inquire_variable( ncid, in_var % varid, & |
---|
| 577 | ndims = in_var % ndim, & |
---|
| 578 | dimids = in_var % dimids )) |
---|
| 579 | |
---|
| 580 | DO i = 1, in_var % ndim |
---|
| 581 | CALL check(nf90_inquire_dimension( ncid, in_var % dimids(i), & |
---|
| 582 | name = in_var % dimname(i), & |
---|
| 583 | len = in_var % dimlen(i) )) |
---|
| 584 | END DO |
---|
| 585 | |
---|
| 586 | start = (/ 1, 1, 1 /) |
---|
| 587 | IF ( TRIM(in_var % name) .EQ. 'T_SO' ) THEN |
---|
| 588 | ! Skip depth = 0.0 for T_SO and reduce number of depths from 9 to 8 |
---|
| 589 | in_var % dimlen(3) = in_var % dimlen(3) - 1 |
---|
| 590 | |
---|
| 591 | ! Start reading from second level, e.g. depth = 0.005 instead of 0.0 |
---|
| 592 | start(3) = 2 |
---|
| 593 | END IF |
---|
| 594 | |
---|
| 595 | SELECT CASE(in_var % ndim) |
---|
| 596 | |
---|
| 597 | CASE (2) |
---|
| 598 | |
---|
| 599 | ALLOCATE( buffer( in_var % dimlen(1), & |
---|
| 600 | in_var % dimlen(2), & |
---|
| 601 | 1 ) ) |
---|
| 602 | |
---|
| 603 | CASE (3) |
---|
| 604 | |
---|
| 605 | ALLOCATE( buffer( in_var % dimlen(1), & |
---|
| 606 | in_var % dimlen(2), & |
---|
| 607 | in_var % dimlen(3) ) ) |
---|
| 608 | CASE (4) |
---|
| 609 | |
---|
| 610 | ALLOCATE( buffer( in_var % dimlen(1), & |
---|
| 611 | in_var % dimlen(2), & |
---|
| 612 | in_var % dimlen(3) ) ) |
---|
| 613 | CASE DEFAULT |
---|
| 614 | |
---|
| 615 | message = "Failed reading NetCDF variable " // & |
---|
| 616 | TRIM(in_var % name) // " with " // TRIM(str(in_var%ndim)) // & |
---|
| 617 | " dimensions because only two- and and three-dimensional" // & |
---|
| 618 | " variables are supported." |
---|
| 619 | CALL abort('get_netcdf_variable', message) |
---|
| 620 | |
---|
| 621 | END SELECT |
---|
| 622 | CALL run_control('time', 'alloc') |
---|
| 623 | |
---|
| 624 | ! TODO: Check for matching dimensions of buffer and var |
---|
| 625 | CALL check(nf90_get_var( ncid, in_var % varid, buffer, & |
---|
| 626 | start = start, & |
---|
| 627 | count = in_var % dimlen(1:3) ) ) |
---|
| 628 | |
---|
| 629 | CALL run_control('time', 'read') |
---|
| 630 | ELSE |
---|
| 631 | |
---|
| 632 | message = "Failed to read '" // TRIM(in_var % name) // & |
---|
| 633 | "' from file '" // TRIM(in_file) // "'." |
---|
| 634 | CALL report('get_netcdf_variable', message) |
---|
| 635 | |
---|
| 636 | END IF |
---|
| 637 | |
---|
| 638 | CALL check(nf90_close(ncid)) |
---|
| 639 | |
---|
| 640 | CALL run_control('time', 'read') |
---|
| 641 | |
---|
| 642 | END FUNCTION get_netcdf_variable |
---|
| 643 | |
---|
| 644 | |
---|
| 645 | SUBROUTINE update_output(var, array, iter, output_file) |
---|
| 646 | TYPE(nc_var), INTENT(IN) :: var |
---|
| 647 | REAL(dp), INTENT(IN) :: array(:,:,:) |
---|
| 648 | INTEGER, INTENT(IN) :: iter |
---|
| 649 | TYPE(nc_file), INTENT(IN) :: output_file |
---|
| 650 | |
---|
| 651 | INTEGER :: ncid, ndim, start(4), count(4) |
---|
| 652 | LOGICAL :: var_is_time_dependent |
---|
| 653 | |
---|
| 654 | var_is_time_dependent = ( & |
---|
| 655 | var % dimids( var % ndim ) == output_file % dimid_time & |
---|
| 656 | ) |
---|
| 657 | |
---|
| 658 | ! Skip time dimension for output |
---|
| 659 | IF ( var_is_time_dependent ) THEN |
---|
| 660 | ndim = var % ndim - 1 |
---|
| 661 | ELSE |
---|
| 662 | ndim = var % ndim |
---|
| 663 | END IF |
---|
| 664 | |
---|
| 665 | start(:) = (/1,1,1,1/) |
---|
| 666 | start(ndim+1) = iter |
---|
| 667 | count(1:ndim) = var%dimlen(1:ndim) |
---|
| 668 | |
---|
| 669 | CALL check(nf90_open(output_file % name, NF90_WRITE, ncid)) |
---|
| 670 | |
---|
| 671 | ! Reduce dimension of output array according to variable kind |
---|
| 672 | SELECT CASE (TRIM(var % kind)) |
---|
| 673 | |
---|
| 674 | CASE ( 'init scalar profile', 'init u profile', 'init v profile', & |
---|
| 675 | 'init w profile' ) |
---|
| 676 | |
---|
| 677 | CALL check(nf90_put_var( ncid, var%varid, array(1,1,:) ) ) |
---|
| 678 | |
---|
| 679 | CASE ( 'init soil', 'init scalar', 'init u', 'init v', 'init w' ) |
---|
| 680 | |
---|
| 681 | CALL check(nf90_put_var( ncid, var%varid, array(:,:,:) ) ) |
---|
| 682 | |
---|
| 683 | CASE( 'left scalar', 'right scalar', 'left w', 'right w' ) |
---|
| 684 | |
---|
| 685 | CALL check(nf90_put_var( ncid, var%varid, array(1,:,:), & |
---|
| 686 | start=start(1:ndim+1), & |
---|
| 687 | count=count(1:ndim) ) ) |
---|
| 688 | |
---|
| 689 | |
---|
| 690 | IF (.NOT. SIZE(array, 2) .EQ. var % dimlen(1)) THEN |
---|
| 691 | PRINT *, "inifor: update_output: Dimension ", 1, " of variable ", & |
---|
| 692 | TRIM(var % name), " (", var % dimlen(1), & |
---|
| 693 | ") does not match the dimension of the output array (", & |
---|
| 694 | SIZE(array, 2), ")." |
---|
| 695 | STOP |
---|
| 696 | END IF |
---|
| 697 | |
---|
| 698 | |
---|
| 699 | CASE( 'north scalar', 'south scalar', 'north w', 'south w' ) |
---|
| 700 | |
---|
| 701 | CALL check(nf90_put_var( ncid, var%varid, array(:,1,:), & |
---|
| 702 | start=start(1:ndim+1), & |
---|
| 703 | count=count(1:ndim) ) ) |
---|
| 704 | |
---|
| 705 | |
---|
| 706 | CASE( 'surface forcing', 'top scalar', 'top w' ) |
---|
| 707 | |
---|
| 708 | CALL check(nf90_put_var( ncid, var%varid, array(:,:,1), & |
---|
| 709 | start=start(1:ndim+1), & |
---|
| 710 | count=count(1:ndim) ) ) |
---|
| 711 | |
---|
| 712 | CASE ( 'left u', 'right u', 'left v', 'right v' ) |
---|
| 713 | |
---|
| 714 | CALL check(nf90_put_var( ncid, var%varid, array(1,:,:), & |
---|
| 715 | start=start(1:ndim+1), & |
---|
| 716 | count=count(1:ndim) ) ) |
---|
| 717 | |
---|
| 718 | CASE ( 'north u', 'south u', 'north v', 'south v' ) |
---|
| 719 | |
---|
| 720 | CALL check(nf90_put_var( ncid, var%varid, array(:,1,:), & |
---|
| 721 | start=start(1:ndim+1), & |
---|
| 722 | count=count(1:ndim) ) ) |
---|
| 723 | |
---|
| 724 | CASE ( 'top u', 'top v' ) |
---|
| 725 | |
---|
| 726 | CALL check(nf90_put_var( ncid, var%varid, array(:,:,1), & |
---|
| 727 | start=start(1:ndim+1), & |
---|
| 728 | count=count(1:ndim) ) ) |
---|
| 729 | |
---|
| 730 | CASE ( 'time series' ) |
---|
| 731 | |
---|
| 732 | CALL check(nf90_put_var( ncid, var%varid, array(1,1,1), & |
---|
| 733 | start=start(1:ndim+1) ) ) |
---|
| 734 | |
---|
| 735 | CASE ( 'profile' ) |
---|
| 736 | |
---|
| 737 | CALL check(nf90_put_var( ncid, var%varid, array(1,1,:), & |
---|
| 738 | start=start(1:ndim+1), & |
---|
| 739 | count=count(1:ndim) ) ) |
---|
| 740 | |
---|
| 741 | CASE DEFAULT |
---|
| 742 | |
---|
| 743 | message = "Variable kind '" // TRIM(var % kind) // & |
---|
| 744 | "' not recognized." |
---|
| 745 | CALL abort('update_output', message) |
---|
| 746 | |
---|
| 747 | END SELECT |
---|
| 748 | |
---|
| 749 | CALL check(nf90_close(ncid)) |
---|
| 750 | |
---|
| 751 | END SUBROUTINE update_output |
---|
| 752 | |
---|
| 753 | |
---|
| 754 | SUBROUTINE write_netcdf_variable_2d(var, iter, output_file, buffer) |
---|
| 755 | TYPE(nc_var), INTENT(IN) :: var |
---|
| 756 | INTEGER, INTENT(IN) :: iter |
---|
| 757 | TYPE(nc_file), INTENT(IN) :: output_file |
---|
| 758 | REAL(dp), INTENT(IN) :: buffer(:,:,:) |
---|
| 759 | |
---|
| 760 | INTEGER :: ncid, ndim_out, start(4), count(4) |
---|
| 761 | LOGICAL :: last_dimension_is_time |
---|
| 762 | |
---|
| 763 | ndim_out = var % ndim |
---|
| 764 | |
---|
| 765 | last_dimension_is_time = var % dimids( var % ndim ) == output_file % dimid_time |
---|
| 766 | IF ( last_dimension_is_time ) THEN |
---|
| 767 | ndim_out = ndim_out - 1 |
---|
| 768 | END IF |
---|
| 769 | |
---|
| 770 | start(:) = (/1,1,1,iter/) |
---|
| 771 | count(1:ndim_out) = var%dimlen(1:ndim_out) |
---|
| 772 | |
---|
| 773 | CALL check(nf90_open(output_file % name, NF90_WRITE, ncid)) |
---|
| 774 | |
---|
| 775 | IF (TRIM(var % kind) .EQ. 'left/right scalar') THEN |
---|
| 776 | |
---|
| 777 | CALL check(nf90_put_var( ncid, var%varid, buffer(1,:,:) ) ) |
---|
| 778 | |
---|
| 779 | ELSE IF (TRIM(var % kind) .EQ. 'north/south scalar') THEN |
---|
| 780 | |
---|
| 781 | CALL check(nf90_put_var( ncid, var%varid, buffer(:,1,:) ) ) |
---|
| 782 | |
---|
| 783 | ELSE IF (TRIM(var % kind) .EQ. 'top scalar') THEN |
---|
| 784 | |
---|
| 785 | CALL check(nf90_put_var( ncid, var%varid, buffer(:,:,1) ) ) |
---|
| 786 | ELSE |
---|
| 787 | |
---|
| 788 | CALL check(nf90_put_var( ncid, var%varid, buffer ) ) |
---|
| 789 | |
---|
| 790 | END IF |
---|
| 791 | CALL check(nf90_close(ncid)) |
---|
| 792 | |
---|
| 793 | END SUBROUTINE write_netcdf_variable_2d |
---|
| 794 | |
---|
| 795 | |
---|
| 796 | SUBROUTINE check(status) |
---|
| 797 | |
---|
| 798 | INTEGER, INTENT(IN) :: status |
---|
| 799 | |
---|
| 800 | IF (status /= nf90_noerr) THEN |
---|
| 801 | message = "NetCDF API call failed with error: " // & |
---|
| 802 | TRIM( nf90_strerror(status) ) |
---|
| 803 | CALL abort('io.check', message) |
---|
| 804 | END IF |
---|
| 805 | |
---|
| 806 | END SUBROUTINE check |
---|
| 807 | |
---|
| 808 | END MODULE io |
---|