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source: palm/trunk/UTIL/combine_plot_fields.f90 @ 1210

Last change on this file since 1210 was 1047, checked in by maronga, 12 years ago
last commit documented / added nc2vdf
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1	PROGRAM combine_plot_fields
2
3	!------------------------------------------------------------------------------!
4	! This file is part of PALM.
5	!
6	! PALM is free software: you can redistribute it and/or modify it under the terms
7	! of the GNU General Public License as published by the Free Software Foundation,
8	! either version 3 of the License, or (at your option) any later version.
9	!
10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
13	!
14	! You should have received a copy of the GNU General Public License along with
15	! PALM. If not, see <http://www.gnu.org/licenses/>.
16	!
17	! Copyright 1997-2012 Leibniz University Hannover
18	!--------------------------------------------------------------------------------!
19	!
20	! Current revisions:
21	! -----------------
22	!
23	!
24	! Former revisions:
25	! -----------------
26	! $Id: combine_plot_fields.f90 1047 2012-11-09 15:32:58Z raasch $
27	!
28	! 1046 2012-11-09 14:38:45Z maronga
29	! code put under GPL (PALM 3.9)
30	!
31	! 691 2011-03-04 08:45:30Z maronga
32	! Bugfix: check for precursor ocean runs, removed typo
33	!
34	! 493 2010-03-01 08:30:24Z raasch
35	! Exit in case of already complete NetCDF data (due to parallel output in PALM)
36	! cpu measurements included
37	!
38	! 210 2008-11-06 08:54:02Z raasch
39	! Size of pf3d adjusted to the required output size (1 gridpoint less, along
40	! all three dimensions), because output of a subset of the data
41	! (pf3d(nxa:nxe...) in the NF90_PUT_VAR statement caused segmentation fault
42	! with the INTEL compiler.
43	! Subdomain data are read into temporary arrays pf_tmp/pf3d_tmp in order to
44	! avoid INTEL compiler warnings about (automatic) creation of temporary arrays
45	! Bugfix: three misplaced #endif directives
46	!
47	! 114 2007-10-10 00:03:15Z raasch
48	! Bugfix: model_string needed a default value
49	!
50	! Aug 07 Loop for processing of output by coupled runs, id_string does not
51	! contain modus any longer
52	!
53	! 18/01/06 Output of time-averaged data
54	!
55	! 25/05/05 Errors removed
56	!
57	! 26/04/05 Output in NetCDF format, iso2d and avs output only if parameter
58	! file exists
59	!
60	! 31/10/01 All comments and messages translated into English
61	!
62	! 23/02/99 Keine Bearbeitung komprimierter 3D-Daten
63	! Ursprungsversion vom 28/07/97
64	!
65	!
66	! Description:
67	! ------------
68	! This routine combines data of the PALM-subdomains into one file. In PALM
69	! every processor element opens its own file and writes 2D- or 3D-binary-data
70	! into it (different files are opened for xy-, xz-, yz-cross-sections and
71	! 3D-data). For plotting or analyzing these PE-data have to be collected and
72	! to be put into single files, which is done by this routine.
73	! Output format is NetCDF. Additionally, a data are output in a binary format
74	! readable by ISO2D-software (cross-sections) and by AVS (3D-data).
75	!------------------------------------------------------------------------------!
76
77	#if defined( __netcdf )
78	USE netcdf
79	#endif
80
81	IMPLICIT NONE
82
83	!
84	!-- Local variables
85	CHARACTER (LEN=2) :: modus, model_string
86	CHARACTER (LEN=4) :: id_string
87	CHARACTER (LEN=10) :: dimname, var_name
88	CHARACTER (LEN=40) :: filename
89
90	CHARACTER (LEN=2000), DIMENSION(0:1) :: var_list
91
92	INTEGER, PARAMETER :: spk = SELECTED_REAL_KIND( 6 )
93
94	INTEGER :: av, danz, i, id, &
95	j, k, model, models, nc_stat, nxa, nxag, nxe, nxeg, nya, &
96	nyag, nye, nyeg, nza, nzag, nze, nzeg, pos, time_step, xa, xe, &
97	xxa, xxe, ya, ye, yya, yye, za, ze, zza, zze
98
99	#if defined( __lc ) \|\| defined( __decalpha )
100	INTEGER(8) :: count, count_rate
101	#elif defined( __nec )
102	INTEGER :: count, count_rate
103	#elif defined( __ibm )
104	INTEGER(8) :: IRTC
105	#endif
106
107	INTEGER, DIMENSION(0:1) :: current_level, current_var, fanz, id_set, &
108	id_var_time, num_var
109
110	INTEGER, DIMENSION(4) :: id_dims_loc
111
112	INTEGER, DIMENSION(0:1,4) :: id_dims
113
114	INTEGER, DIMENSION(0:1,1000) :: id_var, levels
115
116	LOGICAL :: avs_output, compressed, found, iso2d_output, netcdf_output, &
117	netcdf_parallel, netcdf_0, netcdf_1
118
119	REAL :: cpu_start_time, cpu_end_time, dx, simulated_time
120	REAL, DIMENSION(:), ALLOCATABLE :: eta, ho, hu
121	REAL, DIMENSION(:,:), ALLOCATABLE :: pf, pf_tmp
122	REAL(spk), DIMENSION(:,:,:), ALLOCATABLE :: pf3d, pf3d_tmp
123
124	PRINT*, ''
125	PRINT*, ''
126	PRINT, ' combine_plot_fields *'
127
128	!
129	!-- Find out if a coupled run has been carried out
130	INQUIRE( FILE='COUPLING_PORT_OPENED', EXIST=found )
131	IF ( found ) THEN
132	models = 2
133	PRINT*, ' coupled run'
134	ELSE
135	models = 1
136	PRINT*, ' uncoupled run'
137	ENDIF
138
139	!
140	!-- Find out if a precursor ocean run has been carried out
141	INQUIRE( FILE='PRECURSOR_OCEAN', EXIST=found )
142	IF ( found ) THEN
143	model_string = '_O'
144	PRINT*, ' precursor ocean run'
145	ELSE
146	model_string = ''
147	ENDIF
148
149	!
150	!-- Do everything for each model
151	DO model = 1, models
152	!
153	!-- Set the model string used to identify the filenames
154	IF ( models == 2 ) THEN
155	PRINT*, ''
156	PRINT, ' combine_plot_fields *'
157	IF ( model == 2 ) THEN
158	model_string = '_O'
159	PRINT*, ' now combining ocean data'
160	PRINT*, ' ========================'
161	ELSE
162	PRINT*, ' now combining atmosphere data'
163	PRINT*, ' ============================='
164	ENDIF
165	ENDIF
166	!
167	!-- 2D-arrays for ISO2D
168	!-- Main loop for the three different cross-sections, starting with
169	!-- xy-section
170	modus = 'XY'
171	PRINT*, ''
172	DO WHILE ( modus == 'XY' .OR. modus == 'XZ' .OR. modus == 'YZ' )
173	!
174	!-- Take current time
175	#if defined( __lc ) \|\| defined( __decalpha ) \|\| defined( __nec )
176	CALL SYSTEM_CLOCK( count, count_rate )
177	cpu_start_time = REAL( count ) / REAL( count_rate )
178	#elif defined( __ibm )
179	cpu_start_time = IRTC( ) * 1E-9
180	#else
181	PRINT*, '+++ INFORMATIVE: no time measurement defined on this host'
182	#endif
183
184	netcdf_parallel = .FALSE.
185	!
186	!-- Check, if file from PE0 exists. If it does not exist, PALM did not
187	!-- create any output for this cross-section.
188	danz = 0
189	WRITE (id_string,'(I4.4)') danz
190	INQUIRE ( &
191	FILE='PLOT2D_'//modus//TRIM( model_string )//'_'//id_string, &
192	EXIST=found )
193	!
194	!-- Find out the number of files (equal to the number of PEs which
195	!-- have been used in PALM) and open them
196	DO WHILE ( found )
197
198	OPEN ( danz+110, &
199	FILE='PLOT2D_'//modus//TRIM( model_string )//'_'//id_string, &
200	FORM='UNFORMATTED' )
201	danz = danz + 1
202	WRITE (id_string,'(I4.4)') danz
203	INQUIRE ( &
204	FILE='PLOT2D_'//modus//TRIM( model_string )//'_'//id_string, &
205	EXIST=found )
206
207	ENDDO
208
209	!
210	!-- Inquire whether an iso2d parameter file exists
211	INQUIRE( FILE='PLOT2D_'//modus//'_GLOBAL'//TRIM( model_string ), &
212	EXIST=iso2d_output )
213
214	!
215	!-- Inquire whether a NetCDF file exists
216	INQUIRE( FILE='DATA_2D_'//modus//'_NETCDF'//TRIM( model_string ), &
217	EXIST=netcdf_0 )
218
219	!
220	!-- Inquire whether a NetCDF file for time-averaged data exists
221	INQUIRE( FILE='DATA_2D_'//modus//'_AV_NETCDF'//TRIM( model_string ),&
222	EXIST=netcdf_1 )
223
224	IF ( netcdf_0 .OR. netcdf_1 ) THEN
225	netcdf_output = .TRUE.
226	!
227	!-- Inquire whether the NetCDF file is already complete (parallel
228	!-- output)
229	INQUIRE( FILE='NO_COMBINE_PLOT_FIELDS_'//modus, &
230	EXIST=netcdf_parallel )
231	IF ( netcdf_parallel ) THEN
232	netcdf_parallel = .TRUE.
233	ELSE
234	netcdf_parallel = .FALSE.
235	ENDIF
236	ELSE
237	netcdf_output = .FALSE.
238	ENDIF
239
240	!
241	!-- Info-output
242	PRINT*, ''
243	PRINT, ' combine_plot_fields *'
244	#if defined( __netcdf )
245	IF ( netcdf_output ) THEN
246	IF ( netcdf_parallel ) THEN
247	PRINT*, ' NetCDF ' // modus // '-data are in one file ', &
248	'(NetCDF4-format) - merging not neccessary'
249	ELSE
250	PRINT*, ' NetCDF output enabled'
251	ENDIF
252	ENDIF
253	#else
254	IF ( netcdf_output ) THEN
255	PRINT*, '--- Sorry, no NetCDF support on this host'
256	netcdf_output = .FALSE.
257	ENDIF
258	#endif
259	IF ( .NOT. netcdf_parallel ) THEN
260	IF ( danz /= 0 ) THEN
261	PRINT*, ' ',modus,'-section: ', danz, ' file(s) found'
262	ELSE
263	PRINT*, ' no ', modus, '-section data available'
264	ENDIF
265	ENDIF
266
267	IF ( netcdf_output .AND. .NOT. netcdf_parallel .AND. danz /= 0 ) &
268	THEN
269	#if defined( __netcdf )
270	DO av = 0, 1
271
272	IF ( av == 0 .AND. .NOT. netcdf_0 ) CYCLE
273	IF ( av == 1 .AND. .NOT. netcdf_1 ) CYCLE
274
275	!
276	!-- Open NetCDF dataset
277	IF ( av == 0 ) THEN
278	filename = 'DATA_2D_'//modus//'_NETCDF' &
279	//TRIM( model_string )
280	ELSE
281	filename = 'DATA_2D_'//modus//'_AV_NETCDF' &
282	//TRIM( model_string )
283	ENDIF
284	nc_stat = NF90_OPEN( filename, NF90_WRITE, id_set(av) )
285	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 1 )
286
287	!
288	!-- Get the list of variables (order of variables corresponds with
289	!-- the order of data on the binary file)
290	var_list(av) = ' ' ! GET_ATT does not assign trailing blanks
291	nc_stat = NF90_GET_ATT( id_set(av), NF90_GLOBAL, 'VAR_LIST', &
292	var_list(av) )
293	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 2 )
294
295	!
296	!-- Inquire id of the time coordinate variable
297	nc_stat = NF90_INQ_VARID( id_set(av), 'time', id_var_time(av) )
298	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 3 )
299
300	!
301	!-- Count number of variables; there is one more semicolon in the
302	!-- string than variable names
303	num_var(av) = -1
304	DO i = 1, LEN( var_list(av) )
305	IF ( var_list(av)(i:i) == ';' ) num_var(av) = num_var(av) +1
306	ENDDO
307
308	!
309	!-- Extract the variable names from the list and inquire their
310	!-- NetCDF IDs
311	pos = INDEX( var_list(av), ';' )
312	!
313	!-- Loop over all variables
314	DO i = 1, num_var(av)
315
316	!
317	!-- Extract variable name from list
318	var_list(av) = var_list(av)(pos+1:)
319	pos = INDEX( var_list(av), ';' )
320	var_name = var_list(av)(1:pos-1)
321
322	!
323	!-- Get variable ID from name
324	nc_stat = NF90_INQ_VARID( id_set(av), TRIM( var_name ), &
325	id_var(av,i) )
326	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 4 )
327
328	!
329	!-- Get number of x/y/z levels for that variable
330	nc_stat = NF90_INQUIRE_VARIABLE( id_set(av), id_var(av,i), &
331	dimids = id_dims_loc )
332	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 5 )
333	id_dims(av,:) = id_dims_loc
334
335	!
336	!-- Inquire dimension ID
337	DO j = 1, 4
338	nc_stat = NF90_INQUIRE_DIMENSION( id_set(av), &
339	id_dims(av,j), dimname, levels(av,i) )
340	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 6 )
341
342	IF ( modus == 'XY' .AND. INDEX(dimname, 'z') /= 0 ) EXIT
343	IF ( modus == 'XZ' .AND. INDEX(dimname, 'y') /= 0 ) EXIT
344	IF ( modus == 'YZ' .AND. INDEX(dimname, 'x') /= 0 ) EXIT
345	ENDDO
346
347	ENDDO
348
349	ENDDO ! av = 0, 1
350
351	#endif
352	ENDIF
353
354	!
355	!-- Read the arrays, as long as the end of the file is reached
356	IF ( .NOT. netcdf_parallel ) THEN
357
358	fanz = 0
359	current_level = 1
360	current_var = 999999999
361
362	DO WHILE ( danz /= 0 )
363
364	!
365	!-- Loop over all files (reading data of the subdomains)
366	DO id = 0, danz-1
367	!
368	!-- File from PE0 contains special information at the beginning,
369	!-- concerning the lower and upper indices of the total-domain
370	!-- used in PALM (nxag, nxeg, nyag, nyeg) and the lower and
371	!-- upper indices of the array to be writte by this routine
372	!-- (nxa, nxe, nya, nye). Usually in the horizontal directions
373	!-- nxag=-1 and nxa=0 while all other variables have the same
374	!-- value (i.e. nxeg=nxe).
375	!-- Allocate necessary arrays, open the output file and write
376	!-- the coordinate informations needed by ISO2D.
377	IF ( id == 0 .AND. fanz(0) == 0 .AND. fanz(1) == 0 ) THEN
378	READ ( id+110 ) nxag, nxeg, nyag, nyeg
379	READ ( id+110 ) nxa, nxe, nya, nye
380	ALLOCATE ( eta(nya:nye), ho(nxa:nxe), hu(nxa:nxe), &
381	pf(nxag:nxeg,nyag:nyeg) )
382	READ ( id+110 ) dx, eta, hu, ho
383
384	IF ( iso2d_output ) THEN
385	OPEN ( 2, FILE='PLOT2D_'//modus//TRIM( model_string ),&
386	FORM='UNFORMATTED' )
387	WRITE ( 2 ) dx, eta, hu, ho
388	ENDIF
389	ENDIF
390	!
391	!-- Read output time
392	IF ( netcdf_output .AND. id == 0 ) THEN
393	IF ( netcdf_1 ) THEN
394	READ ( id+110, END=998 ) simulated_time, time_step, av
395	ELSE
396	!
397	!-- For compatibility with earlier PALM versions
398	READ ( id+110, END=998 ) simulated_time, time_step
399	av = 0
400	ENDIF
401	ENDIF
402	!
403	!-- Read subdomain indices
404	READ ( id+110, END=998 ) xa, xe, ya, ye
405	!
406	!-- IF the PE made no output (in case that no part of the
407	!-- cross-section is situated on this PE), indices have the
408	!-- value -1
409	IF ( .NOT. ( xa == -1 .AND. xe == -1 .AND. &
410	ya == -1 .AND. ye == -1 ) ) THEN
411	!
412	!-- Read the subdomain grid-point values
413	ALLOCATE( pf_tmp(xa:xe,ya:ye) )
414	READ ( id+110 ) pf_tmp
415	pf(xa:xe,ya:ye) = pf_tmp
416	DEALLOCATE( pf_tmp )
417	ENDIF
418	IF ( id == 0 ) fanz(av) = fanz(av) + 1
419
420	ENDDO
421	!
422	!-- Write the data of the total domain cross-section
423	IF ( iso2d_output ) WRITE ( 2 ) pf(nxa:nxe,nya:nye)
424
425	!
426	!-- Write same data in NetCDF format
427	IF ( netcdf_output ) THEN
428	#if defined( __netcdf )
429	!
430	!-- Check if a new time step has begun; if yes write data to
431	!-- time axis
432	IF ( current_var(av) > num_var(av) ) THEN
433	current_var(av) = 1
434	nc_stat = NF90_PUT_VAR( id_set(av), id_var_time(av), &
435	(/ simulated_time /), &
436	start = (/ time_step /), &
437	count = (/ 1 /) )
438	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 7 )
439	ENDIF
440
441	!
442	!-- Now write the data; this is mode dependent
443	SELECT CASE ( modus )
444
445	CASE ( 'XY' )
446	nc_stat = NF90_PUT_VAR( id_set(av), &
447	id_var(av,current_var(av)), &
448	pf(nxa:nxe,nya:nye), &
449	start = (/ 1, 1, current_level(av), time_step /), &
450	count = (/ nxe-nxa+1, nye-nya+1, 1, 1 /) )
451	IF ( nc_stat /= NF90_NOERR ) THEN
452	CALL handle_netcdf_error( 8 )
453	ENDIF
454
455	CASE ( 'XZ' )
456	nc_stat = NF90_PUT_VAR( id_set(av), &
457	id_var(av,current_var(av)), &
458	pf(nxa:nxe,nya:nye), &
459	start = (/ 1, current_level(av), 1, time_step /), &
460	count = (/ nxe-nxa+1, 1, nye-nya+1, 1 /) )
461	IF ( nc_stat /= NF90_NOERR ) THEN
462	CALL handle_netcdf_error( 9 )
463	ENDIF
464
465	CASE ( 'YZ' )
466	nc_stat = NF90_PUT_VAR( id_set(av), &
467	id_var(av,current_var(av)), &
468	pf(nxa:nxe,nya:nye), &
469	start = (/ current_level(av), 1, 1, time_step /), &
470	count = (/ 1, nxe-nxa+1, nye-nya+1, 1 /) )
471	IF ( nc_stat /= NF90_NOERR ) THEN
472	CALL handle_netcdf_error( 10 )
473	ENDIF
474
475	END SELECT
476
477	!
478	!-- Data is written, check if max level is reached
479	current_level(av) = current_level(av) + 1
480	IF ( current_level(av) > levels(av,current_var(av)) ) THEN
481	current_level(av) = 1
482	current_var(av) = current_var(av) + 1
483	ENDIF
484
485	#endif
486	ENDIF
487
488	ENDDO
489
490	ENDIF
491
492	998 IF ( danz /= 0 .AND. .NOT. netcdf_parallel ) THEN
493	!
494	!-- Print the number of the arrays processed
495	WRITE (*,'(16X,I4,A)') fanz(0)+fanz(1), ' array(s) processed'
496	IF ( fanz(1) /= 0 ) THEN
497	WRITE (*,'(16X,I4,A)') fanz(1), ' array(s) are time-averaged'
498	ENDIF
499
500	!
501	!-- Close all files and deallocate arrays
502	DO id = 0, danz-1
503	CLOSE ( id+110 )
504	ENDDO
505	CLOSE ( 2 )
506	DEALLOCATE ( eta, ho, hu, pf )
507
508	!
509	!-- Close the NetCDF file
510	IF ( netcdf_output ) THEN
511	#if defined( __netcdf )
512	IF ( netcdf_0 ) THEN
513	nc_stat = NF90_CLOSE( id_set(0) )
514	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 11 )
515	ENDIF
516	IF ( netcdf_1 ) THEN
517	nc_stat = NF90_CLOSE( id_set(1) )
518	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 12 )
519	ENDIF
520	#endif
521	ENDIF
522	ENDIF
523
524	!
525	!-- Output required cpu time
526	IF ( danz /= 0 .AND. .NOT. netcdf_parallel ) THEN
527	#if defined( __lc ) \|\| defined( __decalpha ) \|\| defined( __nec )
528	CALL SYSTEM_CLOCK( count, count_rate )
529	cpu_end_time = REAL( count ) / REAL( count_rate )
530	WRITE (*,'(5X,A,F9.3,A)') 'Required cpu-time: ', &
531	cpu_end_time-cpu_start_time, ' sec'
532	#elif defined( __ibm )
533	cpu_end_time = IRTC( ) * 1E-9
534	WRITE (*,'(5X,A,F9.3,A)') 'Required cpu-time: ', &
535	cpu_end_time-cpu_start_time, ' sec'
536	#else
537	CONTINUE
538	#endif
539	ENDIF
540
541	!
542	!-- Choose the next cross-section
543	SELECT CASE ( modus )
544	CASE ( 'XY' )
545	modus = 'XZ'
546	CASE ( 'XZ' )
547	modus = 'YZ'
548	CASE ( 'YZ' )
549	modus = 'no'
550	END SELECT
551
552	ENDDO
553
554
555	!
556	!-- Combine the 3D-arrays
557	netcdf_parallel = .FALSE.
558
559	!
560	!-- Info-output
561	PRINT*, ' '
562	PRINT, ' combine_plot_fields *'
563
564	!
565	!-- Take current time
566	#if defined( __lc ) \|\| defined( __decalpha ) \|\| defined( __nec )
567	CALL SYSTEM_CLOCK( count, count_rate )
568	cpu_start_time = REAL( count ) / REAL( count_rate )
569	#elif defined( __ibm )
570	cpu_start_time = IRTC( ) * 1E-9
571	#else
572	PRINT*, '+++ INFORMATIVE: no time measurement defined on this host'
573	#endif
574
575	!
576	!-- Inquire whether an avs fld file exists
577	INQUIRE( FILE='PLOT3D_FLD'//TRIM( model_string ), EXIST=avs_output )
578
579	!
580	!-- Inquire whether a NetCDF file exists
581	INQUIRE( FILE='DATA_3D_NETCDF'//TRIM( model_string ), EXIST=netcdf_0 )
582
583	!
584	!-- Inquire whether a NetCDF file for time-averaged data exists
585	INQUIRE( FILE='DATA_3D_AV_NETCDF'//TRIM( model_string ), EXIST=netcdf_1 )
586
587	IF ( netcdf_0 .OR. netcdf_1 ) THEN
588	netcdf_output = .TRUE.
589	!
590	!-- Inquire whether the NetCDF file is already complete (parallel output)
591	INQUIRE( FILE='NO_COMBINE_PLOT_FIELDS_3D', EXIST=netcdf_parallel )
592	IF ( netcdf_parallel ) THEN
593	netcdf_parallel = .TRUE.
594	ELSE
595	netcdf_parallel = .FALSE.
596	ENDIF
597	ELSE
598	netcdf_output = .FALSE.
599	ENDIF
600
601	!
602	!-- Check, if file from PE0 exists; not neccessary in case of parallel
603	!-- PALM output
604	IF ( .NOT. netcdf_parallel ) THEN
605	danz = 0
606	WRITE (id_string,'(I4.4)') danz
607	INQUIRE ( &
608	FILE='PLOT3D_DATA'//TRIM( model_string )//'_'//TRIM( id_string ), &
609	EXIST=found )
610	ELSE
611	found = .FALSE.
612	ENDIF
613
614	!
615	!-- Combination only works, if data are not compressed. In that case,
616	!-- PALM created a flag file (PLOT3D_COMPRESSED)
617	INQUIRE ( FILE='PLOT3D_COMPRESSED'//TRIM( model_string ), &
618	EXIST=compressed )
619
620	!
621	!-- Find out the number of files and open them
622	DO WHILE ( found .AND. .NOT. compressed )
623
624	OPEN ( danz+110, &
625	FILE='PLOT3D_DATA'//TRIM( model_string )//'_'//TRIM(id_string), &
626	FORM='UNFORMATTED')
627	danz = danz + 1
628	WRITE (id_string,'(I4.4)') danz
629	INQUIRE ( &
630	FILE='PLOT3D_DATA'//TRIM( model_string )//'_'//TRIM(id_string), &
631	EXIST=found )
632
633	ENDDO
634
635	#if defined( __netcdf )
636	IF ( netcdf_output ) THEN
637	IF ( netcdf_parallel ) THEN
638	PRINT*, ' NetCDF data are in one file (NetCDF4-format)', &
639	' - merging not neccessary'
640	ELSE
641	PRINT*, ' NetCDF output enabled'
642	ENDIF
643	ENDIF
644	#else
645	IF ( netcdf_output ) THEN
646	PRINT*, '--- Sorry, no NetCDF support on this host'
647	netcdf_output = .FALSE.
648	ENDIF
649	#endif
650	IF ( .NOT. netcdf_parallel ) THEN
651	IF ( danz /= 0 ) THEN
652	PRINT*, ' 3D-data: ', danz, ' file(s) found'
653	ELSE
654	IF ( found .AND. compressed ) THEN
655	PRINT*, '+++ no 3D-data processing, since data are compressed'
656	ELSE
657	PRINT*, ' no 3D-data file available'
658	ENDIF
659	ENDIF
660	ENDIF
661
662	IF ( netcdf_output .AND. .NOT. netcdf_parallel .AND. danz /= 0 ) THEN
663	#if defined( __netcdf )
664	DO av = 0, 1
665
666	IF ( av == 0 .AND. .NOT. netcdf_0 ) CYCLE
667	IF ( av == 1 .AND. .NOT. netcdf_1 ) CYCLE
668
669	!
670	!-- Open NetCDF dataset
671	IF ( av == 0 ) THEN
672	filename = 'DATA_3D_NETCDF'//TRIM( model_string )
673	ELSE
674	filename = 'DATA_3D_AV_NETCDF'//TRIM( model_string )
675	ENDIF
676	nc_stat = NF90_OPEN( filename, NF90_WRITE, id_set(av) )
677	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 13 )
678
679
680	!
681	!-- Get the list of variables (order of variables corresponds with the
682	!-- order of data on the binary file)
683	var_list(av) = ' ' ! GET_ATT does not assign trailing blanks
684	nc_stat = NF90_GET_ATT( id_set(av), NF90_GLOBAL, 'VAR_LIST', &
685	var_list(av) )
686	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 14 )
687
688	!
689	!-- Inquire id of the time coordinate variable
690	nc_stat = NF90_INQ_VARID( id_set(av), 'time', id_var_time(av) )
691	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 15 )
692
693	!
694	!-- Count number of variables; there is one more semicolon in the
695	!-- string than variable names
696	num_var(av) = -1
697	DO i = 1, LEN( var_list(av) )
698	IF ( var_list(av)(i:i) == ';' ) num_var(av) = num_var(av) + 1
699	ENDDO
700
701	!
702	!-- Extract the variable names from the list and inquire their NetCDF
703	!-- IDs
704	pos = INDEX( var_list(av), ';' )
705	!
706	!-- Loop over all variables
707	DO i = 1, num_var(av)
708
709	!
710	!-- Extract variable name from list
711	var_list(av) = var_list(av)(pos+1:)
712	pos = INDEX( var_list(av), ';' )
713	var_name = var_list(av)(1:pos-1)
714
715	!
716	!-- Get variable ID from name
717	nc_stat = NF90_INQ_VARID( id_set(av), TRIM( var_name ), &
718	id_var(av,i) )
719	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 16 )
720
721	ENDDO
722
723	ENDDO ! av=0,1
724
725	#endif
726	ENDIF
727
728	!
729	!-- Read arrays, until the end of the file is reached
730	IF ( .NOT. netcdf_parallel ) THEN
731
732	current_var = 999999999
733	fanz = 0
734	DO WHILE ( danz /= 0 )
735
736	!
737	!-- Loop over all files
738	DO id = 0, danz-1
739	!
740	!-- File from PE0 contains special information at the beginning,
741	!-- concerning the lower and upper indices of the total-domain used
742	!-- in PALM (nxag, nxeg, nyag, nyeg, nzag, nzeg) and the lower and
743	!-- upper indices of the array to be written by this routine (nxa,
744	!-- nxe, nya, nye, nza, nze). Usually nxag=-1 and nxa=0, nyag=-1
745	!-- and nya=0, nzeg=nz and nze=nz_plot3d.
746	!-- Allocate necessary array and open the output file.
747	IF ( id == 0 .AND. fanz(0) == 0 .AND. fanz(1) == 0 ) THEN
748	READ ( id+110 ) nxag, nxeg, nyag, nyeg, nzag, nzeg
749	READ ( id+110 ) nxa, nxe, nya, nye, nza, nze
750	ALLOCATE ( pf3d(nxa:nxe,nya:nye,nza:nze) )
751	IF ( avs_output ) THEN
752	OPEN ( 2, FILE='PLOT3D_DATA'//TRIM( model_string ), &
753	FORM='UNFORMATTED' )
754	ENDIF
755	ENDIF
756
757	!
758	!-- Read output time
759	IF ( netcdf_output .AND. id == 0 ) THEN
760	IF ( netcdf_1 ) THEN
761	READ ( id+110, END=999 ) simulated_time, time_step, av
762	ELSE
763	!
764	!-- For compatibility with earlier PALM versions
765	READ ( id+110, END=999 ) simulated_time, time_step
766	av = 0
767	ENDIF
768	ENDIF
769
770	!
771	!-- Read subdomain indices and grid point values
772	READ ( id+110, END=999 ) xa, xe, ya, ye, za, ze
773	ALLOCATE( pf3d_tmp(xa:xe,ya:ye,za:ze) )
774	READ ( id+110 ) pf3d_tmp
775
776	xxa = MAX( nxa, xa )
777	xxe = MIN( nxe, xe )
778	yya = MAX( nya, ya )
779	yye = MIN( nye, ye )
780	zza = MAX( nza, za )
781	zze = MIN( nze, ze )
782	DO k = zza, zze
783	DO j = yya, yye
784	DO i = xxa, xxe
785	pf3d(i,j,k) = pf3d_tmp(i,j,k)
786	ENDDO
787	ENDDO
788	ENDDO
789
790	DEALLOCATE( pf3d_tmp )
791	IF ( id == 0 ) fanz(av) = fanz(av) + 1
792
793	ENDDO
794
795	!
796	!-- Write data of the total domain
797	IF ( avs_output ) WRITE ( 2 ) pf3d(nxa:nxe,nya:nye,nza:nze)
798
799	!
800	!-- Write same data in NetCDF format
801	IF ( netcdf_output ) THEN
802	#if defined( __netcdf )
803	!
804	!-- Check if a new time step has begun; if yes write data to time
805	!-- axis
806	IF ( current_var(av) > num_var(av) ) THEN
807	current_var(av) = 1
808	nc_stat = NF90_PUT_VAR( id_set(av), id_var_time(av), &
809	(/ simulated_time /),&
810	start = (/ time_step /), count = (/ 1 /) )
811	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 17 )
812	ENDIF
813
814	!
815	!-- Now write the data
816	nc_stat = NF90_PUT_VAR( id_set(av), id_var(av,current_var(av)),&
817	pf3d, start = (/ 1, 1, 1, time_step /),&
818	count = (/ nxe-nxa+1, nye-nya+1, nze-nza+1, 1 /) )
819	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 18 )
820
821	current_var(av) = current_var(av) + 1
822
823	#endif
824	ENDIF
825
826	ENDDO
827
828	ENDIF
829
830	999 IF ( danz /= 0 .AND. .NOT. netcdf_parallel ) THEN
831	!
832	!-- Print the number of arrays processed
833	WRITE (*,'(16X,I4,A)') fanz(0)+fanz(1), ' array(s) processed'
834	IF ( fanz(1) /= 0 ) THEN
835	WRITE (*,'(16X,I4,A)') fanz(1), ' array(s) are time-averaged'
836	ENDIF
837	!
838	!-- Close all files and deallocate array
839	DO id = 0, danz-1
840	CLOSE ( id+110 )
841	ENDDO
842	CLOSE ( 2 )
843	DEALLOCATE ( pf3d )
844	!
845	!-- Close the NetCDF file
846	IF ( netcdf_output ) THEN
847	#if defined( __netcdf )
848	IF ( netcdf_0 ) THEN
849	nc_stat = NF90_CLOSE( id_set(0) )
850	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 19 )
851	ENDIF
852	IF ( netcdf_1 ) THEN
853	nc_stat = NF90_CLOSE( id_set(1) )
854	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 20 )
855	ENDIF
856	#endif
857	ENDIF
858
859	!
860	!-- Output required cpu time
861	#if defined( __lc ) \|\| defined( __decalpha ) \|\| defined( __nec )
862	CALL SYSTEM_CLOCK( count, count_rate )
863	cpu_end_time = REAL( count ) / REAL( count_rate )
864	WRITE (*,'(5X,A,F9.3,A)') 'Required cpu-time: ', &
865	cpu_end_time-cpu_start_time, ' sec'
866	#elif defined( __ibm )
867	cpu_end_time = IRTC( ) * 1E-9
868	WRITE (*,'(5X,A,F9.3,A)') 'Required cpu-time: ', &
869	cpu_end_time-cpu_start_time, ' sec'
870	#endif
871
872	ENDIF
873
874	ENDDO ! models
875
876
877	CONTAINS
878
879
880	SUBROUTINE handle_netcdf_error( errno )
881	!
882	!-- Prints out a text message corresponding to the current NetCDF status
883
884	IMPLICIT NONE
885
886	INTEGER, INTENT(IN) :: errno
887
888	#if defined( __netcdf )
889	IF ( nc_stat /= NF90_NOERR ) THEN
890	PRINT*, '+++ combine_plot_fields netcdf: ', av, errno, &
891	TRIM( nf90_strerror( nc_stat ) )
892	ENDIF
893	#endif
894
895	END SUBROUTINE handle_netcdf_error
896
897
898	END PROGRAM combine_plot_fields
899
900
901

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