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source: palm/trunk/UTIL/combine_plot_fields.f90 @ 2516

Last change on this file since 2516 was 2512, checked in by raasch, 7 years ago
upper bounds of cross section and 3d output changed from nx+1,ny+1 to nx,ny; no output if redundant ghost layer data to NetCDF files
Property svn:keywords set to `Id`
File size: 29.3 KB

Rev	Line
[1]	1	PROGRAM combine_plot_fields
	2
	3	!------------------------------------------------------------------------------!
[1046]	4	! This file is part of PALM.
	5	!
	6	! PALM is free software: you can redistribute it and/or modify it under the terms
	7	! of the GNU General Public License as published by the Free Software Foundation,
	8	! either version 3 of the License, or (at your option) any later version.
	9	!
	10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	13	!
	14	! You should have received a copy of the GNU General Public License along with
	15	! PALM. If not, see <http://www.gnu.org/licenses/>.
	16	!
[1310]	17	! Copyright 1997-2014 Leibniz Universitaet Hannover
[1046]	18	!--------------------------------------------------------------------------------!
	19	!
[691]	20	! Current revisions:
[1]	21	! -----------------
[1469]	22	!
[2365]	23	!
[226]	24	! Former revisions:
	25	! -----------------
	26	! $Id: combine_plot_fields.f90 2512 2017-10-04 08:26:59Z suehring $
[2512]	27	! PALM output does not contain ghost layer data any more
	28	! avs- and iso2d-related parts removed, handling of compressed data removed
	29	!
	30	! 2365 2017-08-21 14:59:59Z kanani
[2365]	31	! Vertical grid nesting implemented (SadiqHuq)
[226]	32	!
[2365]	33	! 1809 2016-04-05 20:13:28Z raasch
	34	!
[1809]	35	! 1808 2016-04-05 19:44:00Z raasch
	36	! cpu measurements are done with standard FORTRAN routine on every machine
	37	!
[1552]	38	! 1551 2015-03-03 14:18:16Z maronga
	39	! Adjustments for data output of soil model quantities
	40	!
[1469]	41	! 1468 2014-09-24 14:06:57Z maronga
	42	! Adapted for use on up to 6-digit processor cores (not tested)
	43	!
[1395]	44	! 1394 2014-05-06 10:17:31Z keck
	45	! KIND-attribute added to all INTEGER and REAL declaration statements
	46	!
[1047]	47	! 1046 2012-11-09 14:38:45Z maronga
	48	! code put under GPL (PALM 3.9)
	49	!
[692]	50	! 691 2011-03-04 08:45:30Z maronga
	51	! Bugfix: check for precursor ocean runs, removed typo
	52	!
[494]	53	! 493 2010-03-01 08:30:24Z raasch
	54	! Exit in case of already complete NetCDF data (due to parallel output in PALM)
	55	! cpu measurements included
	56	!
[226]	57	! 210 2008-11-06 08:54:02Z raasch
[210]	58	! Size of pf3d adjusted to the required output size (1 gridpoint less, along
	59	! all three dimensions), because output of a subset of the data
	60	! (pf3d(nxa:nxe...) in the NF90_PUT_VAR statement caused segmentation fault
	61	! with the INTEL compiler.
[191]	62	! Subdomain data are read into temporary arrays pf_tmp/pf3d_tmp in order to
	63	! avoid INTEL compiler warnings about (automatic) creation of temporary arrays
[179]	64	! Bugfix: three misplaced #endif directives
[1]	65	!
[139]	66	! 114 2007-10-10 00:03:15Z raasch
	67	! Bugfix: model_string needed a default value
	68	!
[114]	69	! Aug 07 Loop for processing of output by coupled runs, id_string does not
	70	! contain modus any longer
	71	!
[1]	72	! 18/01/06 Output of time-averaged data
	73	!
	74	! 25/05/05 Errors removed
	75	!
	76	! 26/04/05 Output in NetCDF format, iso2d and avs output only if parameter
	77	! file exists
	78	!
	79	! 31/10/01 All comments and messages translated into English
	80	!
	81	! 23/02/99 Keine Bearbeitung komprimierter 3D-Daten
	82	! Ursprungsversion vom 28/07/97
	83	!
	84	!
	85	! Description:
	86	! ------------
	87	! This routine combines data of the PALM-subdomains into one file. In PALM
	88	! every processor element opens its own file and writes 2D- or 3D-binary-data
	89	! into it (different files are opened for xy-, xz-, yz-cross-sections and
	90	! 3D-data). For plotting or analyzing these PE-data have to be collected and
	91	! to be put into single files, which is done by this routine.
	92	! Output format is NetCDF. Additionally, a data are output in a binary format
	93	! readable by ISO2D-software (cross-sections) and by AVS (3D-data).
	94	!------------------------------------------------------------------------------!
	95
	96	#if defined( __netcdf )
	97	USE netcdf
	98	#endif
	99
	100	IMPLICIT NONE
	101
	102	!
	103	!-- Local variables
[108]	104	CHARACTER (LEN=2) :: modus, model_string
[1468]	105	CHARACTER (LEN=6) :: id_string
[1551]	106	CHARACTER (LEN=20) :: dimname, var_name
[1]	107	CHARACTER (LEN=40) :: filename
	108
	109	CHARACTER (LEN=2000), DIMENSION(0:1) :: var_list
	110
[1394]	111	INTEGER, PARAMETER :: iwp = 4, spk = SELECTED_REAL_KIND( 6 ), wp = 8
[1]	112
[1394]	113	INTEGER(iwp) :: av, danz, i, id, j, k, model, models, nc_stat, &
	114	nxa, nxag, nxe, nxeg, nya, nyag, nye, nyeg, &
[1551]	115	nza, nze, pos, time_step, &
	116	xa, xe, xxa, xxe, ya, ya_do, ya_tot, ye, ye_do, ye_tot, yya, yye, za, &
	117	ze, zza, zze
[1]	118
[1808]	119	INTEGER(8) :: count, count_rate
[493]	120
[1394]	121	INTEGER(iwp), DIMENSION(0:1) :: current_level, current_var, &
	122	fanz, id_set, id_var_time, num_var
	123	INTEGER(iwp), DIMENSION(4) :: id_dims_loc
	124	INTEGER(iwp), DIMENSION(0:1,4) :: id_dims
	125	INTEGER(iwp), DIMENSION(0:1,1000) :: id_var, levels
[1]	126
[2512]	127	LOGICAL :: found, netcdf_output, netcdf_parallel, netcdf_0, netcdf_1
[2365]	128	LOGICAL :: vnest
[1]	129
[1394]	130	REAL(wp) :: cpu_start_time, cpu_end_time, dx, simulated_time
	131	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: pf, pf_tmp
[191]	132	REAL(spk), DIMENSION(:,:,:), ALLOCATABLE :: pf3d, pf3d_tmp
[1]	133
[2365]	134
	135
[1]	136	PRINT*, ''
[114]	137	PRINT*, ''
[108]	138	PRINT, ' combine_plot_fields *'
[114]	139
	140	!
	141	!-- Find out if a coupled run has been carried out
[108]	142	INQUIRE( FILE='COUPLING_PORT_OPENED', EXIST=found )
[2365]	143	INQUIRE( FILE='VNESTING_PORT_OPENED', EXIST=vnest )
[108]	144	IF ( found ) THEN
	145	models = 2
	146	PRINT*, ' coupled run'
[2365]	147	ELSEIF ( vnest ) THEN
	148	models = 2
	149	PRINT*, ' Vertically nested grid coupling'
[108]	150	ELSE
	151	models = 1
	152	PRINT*, ' uncoupled run'
	153	ENDIF
[114]	154
	155	!
[691]	156	!-- Find out if a precursor ocean run has been carried out
	157	INQUIRE( FILE='PRECURSOR_OCEAN', EXIST=found )
	158	IF ( found ) THEN
	159	model_string = '_O'
	160	PRINT*, ' precursor ocean run'
	161	ELSE
	162	model_string = ''
	163	ENDIF
	164
	165	!
[114]	166	!-- Do everything for each model
[108]	167	DO model = 1, models
[114]	168	!
	169	!-- Set the model string used to identify the filenames
[108]	170	IF ( models == 2 ) THEN
	171	PRINT*, ''
	172	PRINT, ' combine_plot_fields *'
	173	IF ( model == 2 ) THEN
[2365]	174	IF ( vnest ) THEN
	175	model_string = '_N'
	176	PRINT*, ' now combining FINE data'
	177	PRINT*, ' ========================'
	178	ELSE
	179	model_string = '_O'
	180	PRINT*, ' now combining ocean data'
	181	PRINT*, ' ========================'
	182	ENDIF
[108]	183	ELSE
[2365]	184	IF ( vnest ) THEN
	185	PRINT*, ' now combining COARSE data'
	186	PRINT*, ' ============================='
	187	ELSE
	188	PRINT*, ' now combining atmosphere data'
	189	PRINT*, ' ============================='
	190	ENDIF
[108]	191	ENDIF
	192	ENDIF
[1]	193	!
[108]	194	!-- 2D-arrays for ISO2D
	195	!-- Main loop for the three different cross-sections, starting with
	196	!-- xy-section
	197	modus = 'XY'
	198	PRINT*, ''
	199	DO WHILE ( modus == 'XY' .OR. modus == 'XZ' .OR. modus == 'YZ' )
[1]	200	!
[493]	201	!-- Take current time
	202	CALL SYSTEM_CLOCK( count, count_rate )
	203	cpu_start_time = REAL( count ) / REAL( count_rate )
	204
	205	netcdf_parallel = .FALSE.
	206	!
[108]	207	!-- Check, if file from PE0 exists. If it does not exist, PALM did not
	208	!-- create any output for this cross-section.
	209	danz = 0
[1468]	210	WRITE (id_string,'(I6.6)') danz
[108]	211	INQUIRE ( &
	212	FILE='PLOT2D_'//modus//TRIM( model_string )//'_'//id_string, &
	213	EXIST=found )
	214	!
	215	!-- Find out the number of files (equal to the number of PEs which
	216	!-- have been used in PALM) and open them
	217	DO WHILE ( found )
[1]	218
[108]	219	OPEN ( danz+110, &
	220	FILE='PLOT2D_'//modus//TRIM( model_string )//'_'//id_string, &
	221	FORM='UNFORMATTED' )
	222	danz = danz + 1
[1468]	223	WRITE (id_string,'(I6.6)') danz
[108]	224	INQUIRE ( &
	225	FILE='PLOT2D_'//modus//TRIM( model_string )//'_'//id_string, &
	226	EXIST=found )
[1]	227
[108]	228	ENDDO
[1]	229
	230	!
[108]	231	!-- Inquire whether a NetCDF file exists
	232	INQUIRE( FILE='DATA_2D_'//modus//'_NETCDF'//TRIM( model_string ), &
	233	EXIST=netcdf_0 )
[1]	234
	235	!
[108]	236	!-- Inquire whether a NetCDF file for time-averaged data exists
	237	INQUIRE( FILE='DATA_2D_'//modus//'_AV_NETCDF'//TRIM( model_string ),&
	238	EXIST=netcdf_1 )
[1]	239
[108]	240	IF ( netcdf_0 .OR. netcdf_1 ) THEN
	241	netcdf_output = .TRUE.
[493]	242	!
	243	!-- Inquire whether the NetCDF file is already complete (parallel
	244	!-- output)
	245	INQUIRE( FILE='NO_COMBINE_PLOT_FIELDS_'//modus, &
	246	EXIST=netcdf_parallel )
	247	IF ( netcdf_parallel ) THEN
	248	netcdf_parallel = .TRUE.
	249	ELSE
	250	netcdf_parallel = .FALSE.
	251	ENDIF
[108]	252	ELSE
	253	netcdf_output = .FALSE.
	254	ENDIF
[1]	255
	256	!
[108]	257	!-- Info-output
	258	PRINT*, ''
	259	PRINT, ' combine_plot_fields *'
[1]	260	#if defined( __netcdf )
[493]	261	IF ( netcdf_output ) THEN
	262	IF ( netcdf_parallel ) THEN
	263	PRINT*, ' NetCDF ' // modus // '-data are in one file ', &
	264	'(NetCDF4-format) - merging not neccessary'
	265	ELSE
	266	PRINT*, ' NetCDF output enabled'
	267	ENDIF
	268	ENDIF
[1]	269	#else
[108]	270	IF ( netcdf_output ) THEN
	271	PRINT*, '--- Sorry, no NetCDF support on this host'
	272	netcdf_output = .FALSE.
	273	ENDIF
[1]	274	#endif
[493]	275	IF ( .NOT. netcdf_parallel ) THEN
	276	IF ( danz /= 0 ) THEN
	277	PRINT*, ' ',modus,'-section: ', danz, ' file(s) found'
	278	ELSE
	279	PRINT*, ' no ', modus, '-section data available'
	280	ENDIF
[108]	281	ENDIF
[1]	282
[493]	283	IF ( netcdf_output .AND. .NOT. netcdf_parallel .AND. danz /= 0 ) &
	284	THEN
[1]	285	#if defined( __netcdf )
[108]	286	DO av = 0, 1
[1]	287
[108]	288	IF ( av == 0 .AND. .NOT. netcdf_0 ) CYCLE
	289	IF ( av == 1 .AND. .NOT. netcdf_1 ) CYCLE
[1]	290
	291	!
[108]	292	!-- Open NetCDF dataset
	293	IF ( av == 0 ) THEN
	294	filename = 'DATA_2D_'//modus//'_NETCDF' &
	295	//TRIM( model_string )
	296	ELSE
	297	filename = 'DATA_2D_'//modus//'_AV_NETCDF' &
	298	//TRIM( model_string )
	299	ENDIF
	300	nc_stat = NF90_OPEN( filename, NF90_WRITE, id_set(av) )
	301	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 1 )
[1]	302
	303	!
[108]	304	!-- Get the list of variables (order of variables corresponds with
	305	!-- the order of data on the binary file)
	306	var_list(av) = ' ' ! GET_ATT does not assign trailing blanks
	307	nc_stat = NF90_GET_ATT( id_set(av), NF90_GLOBAL, 'VAR_LIST', &
	308	var_list(av) )
	309	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 2 )
[1]	310
	311	!
[108]	312	!-- Inquire id of the time coordinate variable
	313	nc_stat = NF90_INQ_VARID( id_set(av), 'time', id_var_time(av) )
	314	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 3 )
[1]	315
	316	!
[108]	317	!-- Count number of variables; there is one more semicolon in the
	318	!-- string than variable names
	319	num_var(av) = -1
	320	DO i = 1, LEN( var_list(av) )
	321	IF ( var_list(av)(i:i) == ';' ) num_var(av) = num_var(av) +1
	322	ENDDO
[1]	323
	324	!
[108]	325	!-- Extract the variable names from the list and inquire their
	326	!-- NetCDF IDs
	327	pos = INDEX( var_list(av), ';' )
[1]	328	!
[108]	329	!-- Loop over all variables
	330	DO i = 1, num_var(av)
[1]	331
	332	!
[108]	333	!-- Extract variable name from list
	334	var_list(av) = var_list(av)(pos+1:)
	335	pos = INDEX( var_list(av), ';' )
	336	var_name = var_list(av)(1:pos-1)
[1]	337
	338	!
[108]	339	!-- Get variable ID from name
	340	nc_stat = NF90_INQ_VARID( id_set(av), TRIM( var_name ), &
	341	id_var(av,i) )
	342	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 4 )
[1]	343
	344	!
[108]	345	!-- Get number of x/y/z levels for that variable
	346	nc_stat = NF90_INQUIRE_VARIABLE( id_set(av), id_var(av,i), &
	347	dimids = id_dims_loc )
	348	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 5 )
	349	id_dims(av,:) = id_dims_loc
[1]	350
	351	!
[108]	352	!-- Inquire dimension ID
	353	DO j = 1, 4
	354	nc_stat = NF90_INQUIRE_DIMENSION( id_set(av), &
	355	id_dims(av,j), dimname, levels(av,i) )
	356	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 6 )
[1]	357
[108]	358	IF ( modus == 'XY' .AND. INDEX(dimname, 'z') /= 0 ) EXIT
	359	IF ( modus == 'XZ' .AND. INDEX(dimname, 'y') /= 0 ) EXIT
	360	IF ( modus == 'YZ' .AND. INDEX(dimname, 'x') /= 0 ) EXIT
	361	ENDDO
	362
[1]	363	ENDDO
	364
[108]	365	ENDDO ! av = 0, 1
[1]	366
[179]	367	#endif
[108]	368	ENDIF
[1]	369
	370	!
[108]	371	!-- Read the arrays, as long as the end of the file is reached
[493]	372	IF ( .NOT. netcdf_parallel ) THEN
[1]	373
[493]	374	fanz = 0
	375	current_level = 1
	376	current_var = 999999999
[1]	377
[493]	378	DO WHILE ( danz /= 0 )
	379
[1]	380	!
[493]	381	!-- Loop over all files (reading data of the subdomains)
	382	DO id = 0, danz-1
[1]	383	!
[493]	384	!-- File from PE0 contains special information at the beginning,
	385	!-- concerning the lower and upper indices of the total-domain
[2512]	386	!-- used in PALM (nxa, nxe, nya, nye).
[493]	387	!-- Allocate necessary arrays, open the output file and write
	388	!-- the coordinate informations needed by ISO2D.
	389	IF ( id == 0 .AND. fanz(0) == 0 .AND. fanz(1) == 0 ) THEN
[2512]	390
[493]	391	READ ( id+110 ) nxa, nxe, nya, nye
[2512]	392	ALLOCATE ( pf(nxa:nxe,nya:nye) )
[1551]	393	!
	394	!-- Set actual domain bounds to total domain
	395	ya_do = nya
	396	ye_do = nye
	397
[108]	398	ENDIF
[1]	399	!
[493]	400	!-- Read output time
	401	IF ( netcdf_output .AND. id == 0 ) THEN
[2512]	402	READ ( id+110, END=998 ) simulated_time, time_step, av
[108]	403	ENDIF
[1]	404	!
[493]	405	!-- Read subdomain indices
[1551]	406	READ ( id+110, END=998 ) xa, xe, ya, ye, ya_tot, ye_tot
	407
[1]	408	!
[493]	409	!-- IF the PE made no output (in case that no part of the
	410	!-- cross-section is situated on this PE), indices have the
	411	!-- value -1
	412	IF ( .NOT. ( xa == -1 .AND. xe == -1 .AND. &
	413	ya == -1 .AND. ye == -1 ) ) THEN
[1551]	414
	415
[1]	416	!
[493]	417	!-- Read the subdomain grid-point values
	418	ALLOCATE( pf_tmp(xa:xe,ya:ye) )
	419	READ ( id+110 ) pf_tmp
[1551]	420	!
	421	!-- Calculate indices on atmospheric grid (e.g. for soil model
	422	!-- quantities)
	423	IF ( ya /= ya_tot .OR. ye /= ye_tot ) THEN
	424	ye_do = ye - ya
	425	ya_do = ya
	426	pf(xa:xe,ya_do:ye_do) = pf_tmp
	427	ELSE
	428	ye_do = nye
	429	ya_do = nya
	430	pf(xa:xe,ya:ye) = pf_tmp
	431	ENDIF
	432
[493]	433	DEALLOCATE( pf_tmp )
	434	ENDIF
	435	IF ( id == 0 ) fanz(av) = fanz(av) + 1
[1]	436
[493]	437	ENDDO
[1]	438	!
[2512]	439	!-- Write data in NetCDF format
[493]	440	IF ( netcdf_output ) THEN
[1]	441	#if defined( __netcdf )
	442	!
[493]	443	!-- Check if a new time step has begun; if yes write data to
	444	!-- time axis
	445	IF ( current_var(av) > num_var(av) ) THEN
	446	current_var(av) = 1
	447	nc_stat = NF90_PUT_VAR( id_set(av), id_var_time(av), &
	448	(/ simulated_time /), &
	449	start = (/ time_step /), &
	450	count = (/ 1 /) )
	451	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 7 )
	452	ENDIF
[1]	453
	454	!
[493]	455	!-- Now write the data; this is mode dependent
	456	SELECT CASE ( modus )
[1]	457
[493]	458	CASE ( 'XY' )
	459	nc_stat = NF90_PUT_VAR( id_set(av), &
[1]	460	id_var(av,current_var(av)), &
	461	pf(nxa:nxe,nya:nye), &
	462	start = (/ 1, 1, current_level(av), time_step /), &
	463	count = (/ nxe-nxa+1, nye-nya+1, 1, 1 /) )
[493]	464	IF ( nc_stat /= NF90_NOERR ) THEN
	465	CALL handle_netcdf_error( 8 )
	466	ENDIF
[1]	467
[493]	468	CASE ( 'XZ' )
	469	nc_stat = NF90_PUT_VAR( id_set(av), &
[1]	470	id_var(av,current_var(av)), &
[1551]	471	pf(nxa:nxe,ya_do:ye_do), &
[1]	472	start = (/ 1, current_level(av), 1, time_step /), &
[1551]	473	count = (/ nxe-nxa+1, 1, ye_do-ya_do+1, 1 /) )
[493]	474	IF ( nc_stat /= NF90_NOERR ) THEN
	475	CALL handle_netcdf_error( 9 )
	476	ENDIF
[1]	477
[493]	478	CASE ( 'YZ' )
	479	nc_stat = NF90_PUT_VAR( id_set(av), &
[1]	480	id_var(av,current_var(av)), &
[1551]	481	pf(nxa:nxe,ya_do:ye_do), &
[1]	482	start = (/ current_level(av), 1, 1, time_step /), &
[1551]	483	count = (/ 1, nxe-nxa+1, ye_do-ya_do+1, 1 /) )
[493]	484	IF ( nc_stat /= NF90_NOERR ) THEN
	485	CALL handle_netcdf_error( 10 )
	486	ENDIF
[1]	487
[493]	488	END SELECT
[1]	489
	490	!
[493]	491	!-- Data is written, check if max level is reached
	492	current_level(av) = current_level(av) + 1
	493	IF ( current_level(av) > levels(av,current_var(av)) ) THEN
	494	current_level(av) = 1
	495	current_var(av) = current_var(av) + 1
	496	ENDIF
[108]	497
[179]	498	#endif
[493]	499	ENDIF
[1]	500
[493]	501	ENDDO
[1]	502
[493]	503	ENDIF
	504
	505	998 IF ( danz /= 0 .AND. .NOT. netcdf_parallel ) THEN
[1]	506	!
[108]	507	!-- Print the number of the arrays processed
	508	WRITE (*,'(16X,I4,A)') fanz(0)+fanz(1), ' array(s) processed'
	509	IF ( fanz(1) /= 0 ) THEN
	510	WRITE (*,'(16X,I4,A)') fanz(1), ' array(s) are time-averaged'
	511	ENDIF
[1]	512
	513	!
[108]	514	!-- Close all files and deallocate arrays
	515	DO id = 0, danz-1
	516	CLOSE ( id+110 )
	517	ENDDO
	518	CLOSE ( 2 )
[2512]	519	DEALLOCATE ( pf )
[1]	520
	521	!
[493]	522	!-- Close the NetCDF file
	523	IF ( netcdf_output ) THEN
[1]	524	#if defined( __netcdf )
[493]	525	IF ( netcdf_0 ) THEN
	526	nc_stat = NF90_CLOSE( id_set(0) )
	527	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 11 )
	528	ENDIF
	529	IF ( netcdf_1 ) THEN
	530	nc_stat = NF90_CLOSE( id_set(1) )
	531	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 12 )
	532	ENDIF
	533	#endif
[108]	534	ENDIF
[493]	535	ENDIF
	536
	537	!
	538	!-- Output required cpu time
	539	IF ( danz /= 0 .AND. .NOT. netcdf_parallel ) THEN
	540	CALL SYSTEM_CLOCK( count, count_rate )
	541	cpu_end_time = REAL( count ) / REAL( count_rate )
	542	WRITE (*,'(5X,A,F9.3,A)') 'Required cpu-time: ', &
	543	cpu_end_time-cpu_start_time, ' sec'
[1]	544	ENDIF
	545
	546	!
[108]	547	!-- Choose the next cross-section
	548	SELECT CASE ( modus )
	549	CASE ( 'XY' )
	550	modus = 'XZ'
	551	CASE ( 'XZ' )
	552	modus = 'YZ'
	553	CASE ( 'YZ' )
	554	modus = 'no'
	555	END SELECT
[1]	556
[108]	557	ENDDO
[1]	558
	559
	560	!
[108]	561	!-- Combine the 3D-arrays
[493]	562	netcdf_parallel = .FALSE.
[1]	563
	564	!
[493]	565	!-- Info-output
	566	PRINT*, ' '
	567	PRINT, ' combine_plot_fields *'
	568
	569	!
	570	!-- Take current time
	571	CALL SYSTEM_CLOCK( count, count_rate )
	572	cpu_start_time = REAL( count ) / REAL( count_rate )
	573
	574	!
[108]	575	!-- Inquire whether a NetCDF file exists
	576	INQUIRE( FILE='DATA_3D_NETCDF'//TRIM( model_string ), EXIST=netcdf_0 )
[1]	577
	578	!
[108]	579	!-- Inquire whether a NetCDF file for time-averaged data exists
	580	INQUIRE( FILE='DATA_3D_AV_NETCDF'//TRIM( model_string ), EXIST=netcdf_1 )
[1]	581
[108]	582	IF ( netcdf_0 .OR. netcdf_1 ) THEN
	583	netcdf_output = .TRUE.
[493]	584	!
	585	!-- Inquire whether the NetCDF file is already complete (parallel output)
	586	INQUIRE( FILE='NO_COMBINE_PLOT_FIELDS_3D', EXIST=netcdf_parallel )
	587	IF ( netcdf_parallel ) THEN
	588	netcdf_parallel = .TRUE.
	589	ELSE
	590	netcdf_parallel = .FALSE.
	591	ENDIF
[108]	592	ELSE
	593	netcdf_output = .FALSE.
	594	ENDIF
[1]	595
	596	!
[493]	597	!-- Check, if file from PE0 exists; not neccessary in case of parallel
	598	!-- PALM output
	599	IF ( .NOT. netcdf_parallel ) THEN
	600	danz = 0
[1468]	601	WRITE (id_string,'(I6.6)') danz
[493]	602	INQUIRE ( &
	603	FILE='PLOT3D_DATA'//TRIM( model_string )//'_'//TRIM( id_string ), &
	604	EXIST=found )
	605	ELSE
	606	found = .FALSE.
	607	ENDIF
[1]	608
	609	!
[108]	610	!-- Find out the number of files and open them
[2512]	611	DO WHILE ( found )
[1]	612
[108]	613	OPEN ( danz+110, &
	614	FILE='PLOT3D_DATA'//TRIM( model_string )//'_'//TRIM(id_string), &
	615	FORM='UNFORMATTED')
	616	danz = danz + 1
[1468]	617	WRITE (id_string,'(I6.6)') danz
[108]	618	INQUIRE ( &
	619	FILE='PLOT3D_DATA'//TRIM( model_string )//'_'//TRIM(id_string), &
	620	EXIST=found )
[1]	621
[108]	622	ENDDO
[1]	623
	624	#if defined( __netcdf )
[493]	625	IF ( netcdf_output ) THEN
	626	IF ( netcdf_parallel ) THEN
	627	PRINT*, ' NetCDF data are in one file (NetCDF4-format)', &
	628	' - merging not neccessary'
	629	ELSE
	630	PRINT*, ' NetCDF output enabled'
	631	ENDIF
	632	ENDIF
[1]	633	#else
	634	IF ( netcdf_output ) THEN
	635	PRINT*, '--- Sorry, no NetCDF support on this host'
	636	netcdf_output = .FALSE.
	637	ENDIF
	638	#endif
[493]	639	IF ( .NOT. netcdf_parallel ) THEN
	640	IF ( danz /= 0 ) THEN
	641	PRINT*, ' 3D-data: ', danz, ' file(s) found'
[108]	642	ELSE
[2512]	643	PRINT*, ' no 3D-data file available'
[108]	644	ENDIF
[1]	645	ENDIF
	646
[493]	647	IF ( netcdf_output .AND. .NOT. netcdf_parallel .AND. danz /= 0 ) THEN
[1]	648	#if defined( __netcdf )
[108]	649	DO av = 0, 1
[1]	650
[108]	651	IF ( av == 0 .AND. .NOT. netcdf_0 ) CYCLE
	652	IF ( av == 1 .AND. .NOT. netcdf_1 ) CYCLE
[1]	653
	654	!
[108]	655	!-- Open NetCDF dataset
	656	IF ( av == 0 ) THEN
	657	filename = 'DATA_3D_NETCDF'//TRIM( model_string )
	658	ELSE
	659	filename = 'DATA_3D_AV_NETCDF'//TRIM( model_string )
	660	ENDIF
	661	nc_stat = NF90_OPEN( filename, NF90_WRITE, id_set(av) )
	662	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 13 )
[1]	663
	664
	665	!
[108]	666	!-- Get the list of variables (order of variables corresponds with the
	667	!-- order of data on the binary file)
	668	var_list(av) = ' ' ! GET_ATT does not assign trailing blanks
	669	nc_stat = NF90_GET_ATT( id_set(av), NF90_GLOBAL, 'VAR_LIST', &
	670	var_list(av) )
	671	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 14 )
[1]	672
	673	!
[108]	674	!-- Inquire id of the time coordinate variable
	675	nc_stat = NF90_INQ_VARID( id_set(av), 'time', id_var_time(av) )
	676	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 15 )
[1]	677
	678	!
[108]	679	!-- Count number of variables; there is one more semicolon in the
	680	!-- string than variable names
	681	num_var(av) = -1
	682	DO i = 1, LEN( var_list(av) )
	683	IF ( var_list(av)(i:i) == ';' ) num_var(av) = num_var(av) + 1
	684	ENDDO
[1]	685
	686	!
[108]	687	!-- Extract the variable names from the list and inquire their NetCDF
	688	!-- IDs
	689	pos = INDEX( var_list(av), ';' )
[1]	690	!
[108]	691	!-- Loop over all variables
	692	DO i = 1, num_var(av)
[1]	693
	694	!
[108]	695	!-- Extract variable name from list
	696	var_list(av) = var_list(av)(pos+1:)
	697	pos = INDEX( var_list(av), ';' )
	698	var_name = var_list(av)(1:pos-1)
[1]	699
	700	!
[108]	701	!-- Get variable ID from name
	702	nc_stat = NF90_INQ_VARID( id_set(av), TRIM( var_name ), &
	703	id_var(av,i) )
	704	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 16 )
[1]	705
[108]	706	ENDDO
[1]	707
[108]	708	ENDDO ! av=0,1
[1]	709
[179]	710	#endif
[108]	711	ENDIF
[1]	712
	713	!
[108]	714	!-- Read arrays, until the end of the file is reached
[493]	715	IF ( .NOT. netcdf_parallel ) THEN
[1]	716
[493]	717	current_var = 999999999
	718	fanz = 0
	719	DO WHILE ( danz /= 0 )
	720
[1]	721	!
[493]	722	!-- Loop over all files
	723	DO id = 0, danz-1
[1]	724	!
[2512]	725	!-- File from PE0 contains at the beginning the index bounds
	726	!-- of PALM's total domain.
	727	!-- Allocate the array for storing the total domain data
[493]	728	IF ( id == 0 .AND. fanz(0) == 0 .AND. fanz(1) == 0 ) THEN
[2512]	729	! READ ( id+110 ) nxag, nxeg, nyag, nyeg
[493]	730	READ ( id+110 ) nxa, nxe, nya, nye, nza, nze
	731	ALLOCATE ( pf3d(nxa:nxe,nya:nye,nza:nze) )
[108]	732	ENDIF
[1]	733
	734	!
[493]	735	!-- Read output time
	736	IF ( netcdf_output .AND. id == 0 ) THEN
	737	IF ( netcdf_1 ) THEN
	738	READ ( id+110, END=999 ) simulated_time, time_step, av
	739	ELSE
[1]	740	!
[493]	741	!-- For compatibility with earlier PALM versions
	742	READ ( id+110, END=999 ) simulated_time, time_step
	743	av = 0
	744	ENDIF
[108]	745	ENDIF
[1]	746
	747	!
[493]	748	!-- Read subdomain indices and grid point values
	749	READ ( id+110, END=999 ) xa, xe, ya, ye, za, ze
	750	ALLOCATE( pf3d_tmp(xa:xe,ya:ye,za:ze) )
	751	READ ( id+110 ) pf3d_tmp
[210]	752
[493]	753	xxa = MAX( nxa, xa )
	754	xxe = MIN( nxe, xe )
	755	yya = MAX( nya, ya )
	756	yye = MIN( nye, ye )
[1551]	757	DO k = za, ze
[493]	758	DO j = yya, yye
	759	DO i = xxa, xxe
	760	pf3d(i,j,k) = pf3d_tmp(i,j,k)
	761	ENDDO
[210]	762	ENDDO
	763	ENDDO
	764
[493]	765	DEALLOCATE( pf3d_tmp )
	766	IF ( id == 0 ) fanz(av) = fanz(av) + 1
[1]	767
[493]	768	ENDDO
[1]	769
	770	!
[2512]	771	!-- Write data of the total domain in NetCDF format
[493]	772	IF ( netcdf_output ) THEN
[1]	773	#if defined( __netcdf )
	774	!
[493]	775	!-- Check if a new time step has begun; if yes write data to time
	776	!-- axis
	777	IF ( current_var(av) > num_var(av) ) THEN
	778	current_var(av) = 1
	779	nc_stat = NF90_PUT_VAR( id_set(av), id_var_time(av), &
	780	(/ simulated_time /),&
	781	start = (/ time_step /), count = (/ 1 /) )
	782	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 17 )
	783	ENDIF
[1]	784
	785	!
[493]	786	!-- Now write the data
	787	nc_stat = NF90_PUT_VAR( id_set(av), id_var(av,current_var(av)),&
[1551]	788	pf3d(nxa:nxe,nya:nye,za:ze), start = (/ 1, 1, 1, time_step /),&
	789	count = (/ nxe-nxa+1, nye-nya+1, ze-za+1, 1 /) )
[493]	790	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 18 )
[1]	791
[493]	792	current_var(av) = current_var(av) + 1
[1]	793
	794	#endif
[493]	795	ENDIF
[1]	796
[493]	797	ENDDO
[1]	798
[493]	799	ENDIF
	800
	801	999 IF ( danz /= 0 .AND. .NOT. netcdf_parallel ) THEN
[1]	802	!
[108]	803	!-- Print the number of arrays processed
	804	WRITE (*,'(16X,I4,A)') fanz(0)+fanz(1), ' array(s) processed'
	805	IF ( fanz(1) /= 0 ) THEN
	806	WRITE (*,'(16X,I4,A)') fanz(1), ' array(s) are time-averaged'
	807	ENDIF
[1]	808	!
[108]	809	!-- Close all files and deallocate array
	810	DO id = 0, danz-1
	811	CLOSE ( id+110 )
	812	ENDDO
	813	CLOSE ( 2 )
	814	DEALLOCATE ( pf3d )
[1]	815	!
[108]	816	!-- Close the NetCDF file
	817	IF ( netcdf_output ) THEN
[1]	818	#if defined( __netcdf )
[108]	819	IF ( netcdf_0 ) THEN
	820	nc_stat = NF90_CLOSE( id_set(0) )
	821	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 19 )
	822	ENDIF
	823	IF ( netcdf_1 ) THEN
	824	nc_stat = NF90_CLOSE( id_set(1) )
	825	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 20 )
	826	ENDIF
	827	#endif
[1]	828	ENDIF
[493]	829
	830	!
	831	!-- Output required cpu time
	832	CALL SYSTEM_CLOCK( count, count_rate )
	833	cpu_end_time = REAL( count ) / REAL( count_rate )
	834	WRITE (*,'(5X,A,F9.3,A)') 'Required cpu-time: ', &
	835	cpu_end_time-cpu_start_time, ' sec'
	836
[1]	837	ENDIF
	838
[108]	839	ENDDO ! models
[1]	840
[108]	841
[1]	842	CONTAINS
	843
	844
	845	SUBROUTINE handle_netcdf_error( errno )
	846	!
	847	!-- Prints out a text message corresponding to the current NetCDF status
	848
	849	IMPLICIT NONE
	850
	851	INTEGER, INTENT(IN) :: errno
	852
[179]	853	#if defined( __netcdf )
[1]	854	IF ( nc_stat /= NF90_NOERR ) THEN
	855	PRINT*, '+++ combine_plot_fields netcdf: ', av, errno, &
	856	TRIM( nf90_strerror( nc_stat ) )
	857	ENDIF
[179]	858	#endif
[1]	859
	860	END SUBROUTINE handle_netcdf_error
	861
	862
	863	END PROGRAM combine_plot_fields
	864
	865
	866

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