source: palm/trunk/TUTORIAL/SOURCE/mrun_data_analysis.tex @ 987

Last change on this file since 987 was 973, checked in by maronga, 12 years ago

tutorial updates

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1% $Id: mrun_data_analysis.tex 973 2012-08-07 16:03:47Z maronga $
2\input{header_tmp.tex}
3%\input{../header_lectures.tex}
4
5\usepackage[utf8]{inputenc}
6\usepackage{ngerman}
7\usepackage{pgf}
8\usetheme{Dresden}
9\usepackage{subfigure}
10\usepackage{units}
11\usepackage{multimedia}
12\usepackage{hyperref}
13\newcommand{\event}[1]{\newcommand{\eventname}{#1}}
14\usepackage{xmpmulti}
15\usepackage{tikz}
16\usetikzlibrary{shapes,arrows,positioning}
17\usetikzlibrary{decorations.markings}             %neues paket
18\usetikzlibrary{decorations.pathreplacing}        %neues paket
19\def\Tiny{\fontsize{4pt}{4pt}\selectfont}
20\usepackage{amsmath}
21\usepackage{amssymb}
22\usepackage{multicol}
23\usepackage{pdfcomment}
24\usepackage{graphicx}
25\usepackage{listings}
26\lstset{showspaces=false,language=fortran,basicstyle=
27        \ttfamily,showstringspaces=false,captionpos=b}
28
29\institute{Institut fÌr Meteorologie und Klimatologie, Leibniz UniversitÀt Hannover}
30\date{last update: \today}
31\event{PALM Seminar}
32\setbeamertemplate{navigation symbols}{}
33
34\setbeamertemplate{footline}
35  {
36    \begin{beamercolorbox}[rightskip=-0.1cm]&
37     {\includegraphics[height=0.65cm]{imuk_logo.pdf}\hfill \includegraphics[height=0.65cm]{luh_logo.pdf}}
38    \end{beamercolorbox}
39    \begin{beamercolorbox}[ht=2.5ex,dp=1.125ex,
40      leftskip=.3cm,rightskip=0.3cm plus1fil]{title in head/foot}
41      {\leavevmode{\usebeamerfont{author in head/foot}\insertshortauthor} \hfill \eventname \hfill \insertframenumber \; / \inserttotalframenumber}
42    \end{beamercolorbox}
43    \begin{beamercolorbox}[colsep=1.5pt]{lower separation line foot}
44    \end{beamercolorbox}
45  }
46%\logo{\includegraphics[width=0.3\textwidth]{luhimuk_logo.pdf}}
47
48\title[Data Analysis]{Data Analysis}
49\author{Siegfried Raasch}
50
51\begin{document}
52
53% Folie 1
54\begin{frame}
55\titlepage
56\end{frame}
57
58\section{Data Analysis}
59\subsection{Data Analysis}
60
61% Folie 2
62\begin{frame}
63   \frametitle{PALM Data Analysis}
64   
65   \footnotesize
66   PALM  offers different ways of standard output to analyze the simulation data:
67   \begin{enumerate}
68      \item<2-> Run control informations (for certain timesteps)
69      \item<3-> Mean vertical profiles
70      \begin{itemize}
71         \footnotesize
72         \item[-]<3-> horizontally averaged, instantaneous or time-averaged
73      \end{itemize}
74      \item<4-> Time series
75      \item<5-> Two-dimensional cross sections ($xy$, $xz$, $yz$)
76      \begin{itemize}
77         \footnotesize
78         \item[-]<5-> instantaneous or time-averaged, + averaged along 3rd dimension
79      \end{itemize}
80      \item<6-> Complete three-dimensional data arrays
81      \begin{itemize}
82         \footnotesize
83         \item[-]<6-> instantaneous or time-averaged
84      \end{itemize}
85   \end{enumerate}
86   \quad \onslide<7-> Others (spectra, particle data)\\
87   \vspace{3mm}
88   \onslide<8-> First item is pure ASCII-data to give a short overview of the run. All other output is in netCDF format and can be graphically displayed.\\
89   \vspace{2mm}
90   Additionally, power spectra can be output using the spectra-package (use \texttt{mrun}-option \grqq \texttt{-p spectra}\grqq).
91   
92\end{frame}
93
94% Folie 3
95\begin{frame}
96   \tikzstyle{yellow} = [rectangle, fill=yellow!20, font=\scriptsize, minimum height=1.2cm]
97   \tikzstyle{purple} = [rectangle, fill=magenta!10, font=\scriptsize, minimum height=0.9cm]
98   \tikzstyle{white} = [rectangle, font=\tiny, minimum height=0.9cm]
99     
100   \frametitle{Processing Standard Output Data with Graphics Software (Public Domain-Software)}
101   
102   \footnotesize
103   The standard output files are in netCDF format which can be easily displayed with \texttt{ncview}, \texttt{ncl}, or \texttt{ferret}.
104   
105   \begin{tikzpicture}[auto, node distance=0]
106   
107      % Zeile 1
108      \node [yellow, text width=0.2\textwidth] (1) {standard output};
109      \node [yellow, text width=0.25\textwidth, right=0.0cm of 1] (2) {names of local files created by PALM};   
110      \node [yellow, text width=0.25\textwidth, right=0.0cm of 2] (3) {suffix of permanent files as defined in \texttt{.mrun.config}};   
111      \node [yellow, text width=0.25\textwidth, right=0.0cm of 3] (4) {call of graphics software};   
112     
113      % Zeile 2     
114      \node [purple, text width=0.2\textwidth, below=0.0cm of 1] (12) {mean vertical profiles};
115      \node [white, text width=0.25\textwidth, below=0.0cm of 2] (22) {\texttt{DATA\_1D\_PR\_NETCDF}};
116      \node [white, text width=0.25\textwidth, below=0.0cm of 3] (32) {\texttt{\_pr.nc}};
117      \node [white, text width=0.25\textwidth, below=0.0cm of 4] (42) {\texttt{ncview <filename>}\\
118      \texttt{palmplot pr <options>}\\
119      \texttt{ferret -gui}};
120     
121      % Zeile 3     
122      \node [purple, text width=0.2\textwidth, below=0.0cm of 12] (13) {time series};
123      \node [white, text width=0.25\textwidth, below=0.0cm of 22] (23) {\texttt{DATA\_1D\_TS\_NETCDF}};
124      \node [white, text width=0.25\textwidth, below=0.0cm of 32] (33) {\texttt{\_ts.nc}};
125      \node [white, text width=0.25\textwidth, below=0.0cm of 42] (43) {\texttt{ncview <filename>}\\
126      \texttt{palmplot ts <options>}\\
127      \texttt{ferret -gui}};
128     
129      % Zeile 4           
130      \node [purple, text width=0.2\textwidth, minimum height=1.5cm, below=0.0cm of 13] (14) {2d-cross-sections};
131      \node [white, text width=0.25\textwidth, minimum height=1.5cm, below=0.0cm of 23] (24) {\texttt{DATA\_2D\_XY\_NETCDF}\\ \texttt{DATA\_2D\_XZ\_NETCDF}\\ \texttt{DATA\_2D\_YZ\_NETCDF}};
132      \node [white, text width=0.25\textwidth, minimum height=1.5cm, below=0.0cm of 33] (34) {\texttt{\_xy.nc}\\ \texttt{\_xz.nc}\\ \texttt{\_yz.nc}};
133      \node [white, text width=0.25\textwidth, minimum height=1.5cm, below=0.0cm of 43] (44) {\texttt{ncview <filename>}\\
134      \texttt{palmplot xy <options>}\\
135      \texttt{palmplot xz <options>}\\
136      \texttt{palmplot yz <options>}\\
137      \texttt{ferret -gui}};
138                 
139      % Zeile 5     
140      \node [purple, text width=0.2\textwidth, below=0.0cm of 14] (15) {3d-data};
141      \node [white, text width=0.25\textwidth, below=0.0cm of 24] (25) {\texttt{DATA\_3D\_NETCDF}};
142      \node [white, text width=0.25\textwidth, below=0.0cm of 34] (35) {\texttt{\_3d.nc}}
143      \node [white, text width=0.25\textwidth, below=0.0cm of 44] (45) {\texttt{ncview <filename>}\\
144      \texttt{palmplot xy <options>}\\
145      \texttt{ferret -gui}};
146   
147      \draw[-] (1.south west) -- (4.south east);   
148      \draw[-] (13.south west) -- (43.south east);
149      \draw[-] (1.north east) -- (15.south east);
150   \end{tikzpicture}
151\end{frame}
152
153% Folie 4
154\begin{frame}
155   \frametitle{User Actions Necessary to Get Output}
156   Example for the case of mean vertical profiles:
157   \footnotesize
158   \begin{enumerate}
159   
160      \item<2-> \textbf{Carefully think about, which variables you want to analyze}
161      \begin{itemize}
162         \scriptsize
163              \item[]<2-> e.g. temperature, wind, etc., resolved- or subgrid-scale?, output interval?, should they be time averaged?
164      \end{itemize}
165      \vspace{1mm}
166      \item<3-> \textbf{Find and set the appropriate output parameters in the parameter file}
167      \begin{itemize}
168         \scriptsize
169              \item[]<3-> \texttt{data\_output\_pr = 'pt', 'u', 'w \dq pt\dq\, ',  dt\_dopr = 900.0,}
170              \item[]<3-> \texttt{averaging\_interval\_pr = 600.0, dt\_averaging\_input\_pr = 10.0}
171      \end{itemize}   
172      \vspace{1mm}
173      \item<4-> \textbf{Check, if the necessary file connection statements exist in the .mrun.config file}\\
174      \begin{itemize}
175         \scriptsize
176              \item[]<4-> \texttt{DATA\_1D\_PR\_NETCDF   out:loc:tr  pr\#      \~{}/palm/current\_version/JOBS/\$fname/OUTPUT  \_pr  nc}
177      \end{itemize} 
178      \vspace{1mm}
179      \item<5-> \textbf{Don't forget to activate the file connection statements by setting the correct activation string(s) in \texttt{mrun}-option \texttt{-r}}\\
180      \begin{itemize}
181         \scriptsize
182              \item[]<5-> \texttt{mrun ... -r \dq ... pr\# ...\dq\, ...}
183      \end{itemize}   
184      \vspace{1mm}
185      \item<6-> \textbf{After job completion, change to the OUTPUT-directory and call the appropriate graphics software}\\
186      \begin{itemize}
187         \scriptsize
188              \item[]<6-> \texttt{ncview <filename>} \quad \textbf{or} \quad \texttt{palmplot pr <options>}
189      \end{itemize} 
190   \end{enumerate}   
191
192\end{frame}
193
194\end{document}
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