!> @file spectra_mod.f90 !--------------------------------------------------------------------------------------------------! ! This file is part of the PALM model system. ! ! PALM is free software: you can redistribute it and/or modify it under the terms of the GNU General ! Public License as published by the Free Software Foundation, either version 3 of the License, or ! (at your option) any later version. ! ! PALM is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the ! implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General ! Public License for more details. ! ! You should have received a copy of the GNU General Public License along with PALM. If not, see ! . ! ! Copyright 1997-2021 Leibniz Universitaet Hannover !--------------------------------------------------------------------------------------------------! ! ! ! Current revisions: ! ----------------- ! ! ! Former revisions: ! ----------------- ! $Id: spectra_mod.f90 4843 2021-01-15 15:22:11Z hellstea $ ! local namelist parameter added to switch off the module although the respective module namelist ! appears in the namelist file ! ! 4842 2021-01-14 10:42:28Z raasch ! reading of namelist file and actions in case of namelist errors revised so that statement labels ! and goto statements are not required any more, ! deprecated namelist removed ! ! 4828 2021-01-05 11:21:41Z Giersch ! support for MPI Fortran77 interface (mpif.h) removed ! ! 4591 2020-07-06 15:56:08Z raasch ! File re-formatted to follow the PALM coding standard ! ! 4429 2020-02-27 15:24:30Z raasch ! Bugfix: preprocessor directives rearranged for serial mode ! ! 4360 2020-01-07 11:25:50Z suehring ! Corrected "Former revisions" section ! ! 3805 2019-03-20 15:26:35Z raasch ! Unused variable removed ! ! 3655 2019-01-07 16:51:22Z knoop ! Renamed output variables ! ! Revision 1.1 2001/01/05 15:08:07 raasch ! Initial revision ! !--------------------------------------------------------------------------------------------------! ! Description: ! ------------ !> Calculate horizontal spectra along x and y. !> ATTENTION: 1d-decomposition along y still needs improvement, because in that case the gridpoint !> number along z still depends on the PE number because transpose_xz has to be used !> (and possibly also transpose_zyd needs modification). !--------------------------------------------------------------------------------------------------! MODULE spectra_mod USE kinds PRIVATE CHARACTER (LEN=10), DIMENSION(10) :: data_output_sp = ' ' !< CHARACTER (LEN=2), DIMENSION(10) :: spectra_direction = 'x' !< INTEGER(iwp) :: average_count_sp = 0 !< INTEGER(iwp) :: comp_spectra_level(100) = 999999 !< INTEGER(iwp) :: dosp_time_count = 0 !< INTEGER(iwp) :: n_sp_x = 0, n_sp_y = 0 !< LOGICAL :: calculate_spectra = .FALSE. !< internal switch that spectra are calculated LOGICAL :: spectra_initialized = .FALSE. !< internal switch that spectra related quantities are initialized REAL(wp) :: averaging_interval_sp = 9999999.9_wp !< averaging interval for spectra output REAL(wp) :: dt_dosp = 9999999.9_wp !< time interval for spectra output REAL(wp) :: skip_time_dosp = 9999999.9_wp !< no output of spectra data before this interval has passed REAL(wp), DIMENSION(:), ALLOCATABLE :: var_d !< REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: spectrum_x !< REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: spectrum_y !< SAVE INTERFACE calc_spectra MODULE PROCEDURE calc_spectra END INTERFACE calc_spectra INTERFACE preprocess_spectra MODULE PROCEDURE preprocess_spectra END INTERFACE preprocess_spectra #if defined( __parallel ) INTERFACE calc_spectra_x MODULE PROCEDURE calc_spectra_x END INTERFACE calc_spectra_x INTERFACE calc_spectra_y MODULE PROCEDURE calc_spectra_y END INTERFACE calc_spectra_y #endif INTERFACE spectra_check_parameters MODULE PROCEDURE spectra_check_parameters END INTERFACE spectra_check_parameters INTERFACE spectra_header MODULE PROCEDURE spectra_header END INTERFACE spectra_header INTERFACE spectra_init MODULE PROCEDURE spectra_init END INTERFACE spectra_init INTERFACE spectra_parin MODULE PROCEDURE spectra_parin END INTERFACE spectra_parin PUBLIC average_count_sp, & averaging_interval_sp, & calc_spectra, & calculate_spectra, & comp_spectra_level, & data_output_sp, & dosp_time_count, & dt_dosp, & n_sp_x, & n_sp_y, & skip_time_dosp, & spectra_check_parameters, & spectra_direction, & spectra_header, & spectra_init, & spectra_parin, & spectrum_x, & spectrum_y, & var_d CONTAINS !--------------------------------------------------------------------------------------------------! ! Description: ! ------------ !> Parin for &spectra_par for calculating spectra !--------------------------------------------------------------------------------------------------! SUBROUTINE spectra_parin USE control_parameters, & ONLY: dt_data_output IMPLICIT NONE CHARACTER(LEN=100) :: line !< dummy string that contains the current line of the parameter file INTEGER(iwp) :: io_status !< status after reading the namelist file LOGICAL :: switch_off_module = .FALSE. !< local namelist parameter to switch off the module !< although the respective module namelist appears in !< the namelist file NAMELIST /spectra_parameters/ & averaging_interval_sp, & comp_spectra_level, & data_output_sp, & dt_dosp, & skip_time_dosp, & spectra_direction, & switch_off_module ! !-- Position the namelist-file at the beginning (it was already opened in parin), and try to read !-- the namelist. REWIND( 11 ) READ( 11, spectra_parameters, IOSTAT=io_status ) ! !-- Action depending on the READ status IF ( io_status == 0 ) THEN ! !-- spectra_parameters namelist was found and read correctly. Set flag to indicate that spectra !-- have to be calculated. IF ( .NOT. switch_off_module ) THEN calculate_spectra = .TRUE. !-- Default setting of dt_dosp here (instead of check_parameters), because its current value !-- is needed in init_pegrid. IF ( dt_dosp == 9999999.9_wp ) dt_dosp = dt_data_output ENDIF ELSEIF ( io_status > 0 ) THEN ! !-- spectra_parameters namelist was found but contained errors. Print an error message including !-- the line that caused the problem. BACKSPACE( 11 ) READ( 11 , '(A)' ) line CALL parin_fail_message( 'spectra_parameters', line ) ENDIF END SUBROUTINE spectra_parin !--------------------------------------------------------------------------------------------------! ! Description: ! ------------ !> Initialization of spectra related variables !--------------------------------------------------------------------------------------------------! SUBROUTINE spectra_init USE indices, & ONLY: nx, & ny, & nzb, & nzt IMPLICIT NONE IF ( spectra_initialized ) RETURN IF ( dt_dosp /= 9999999.9_wp ) THEN IF ( .NOT. ALLOCATED( spectrum_x ) ) THEN ALLOCATE( spectrum_x( 1:nx/2, 1:100, 1:10 ) ) spectrum_x = 0.0_wp ENDIF IF ( .NOT. ALLOCATED( spectrum_y ) ) THEN ALLOCATE( spectrum_y( 1:ny/2, 1:100, 1:10 ) ) spectrum_y = 0.0_wp ENDIF ALLOCATE( var_d(nzb:nzt+1) ) var_d = 0.0_wp ENDIF spectra_initialized = .TRUE. END SUBROUTINE spectra_init !--------------------------------------------------------------------------------------------------! ! Description: ! ------------ !> Check spectra related quantities !--------------------------------------------------------------------------------------------------! SUBROUTINE spectra_check_parameters USE control_parameters, & ONLY: averaging_interval, & message_string, & skip_time_data_output IMPLICIT NONE ! !-- Check the average interval IF ( averaging_interval_sp == 9999999.9_wp ) THEN averaging_interval_sp = averaging_interval ENDIF IF ( averaging_interval_sp > dt_dosp ) THEN WRITE( message_string, * ) 'averaging_interval_sp = ', averaging_interval_sp, & ' must be <= dt_dosp = ', dt_dosp CALL message( 'spectra_check_parameters', 'PA0087', 1, 2, 0, 6, 0 ) ENDIF ! !-- Set the default skip time interval for data output, if necessary IF ( skip_time_dosp == 9999999.9_wp ) skip_time_dosp = skip_time_data_output END SUBROUTINE spectra_check_parameters !--------------------------------------------------------------------------------------------------! ! Description: ! ------------ !> Header output for spectra !> !> @todo Output of netcdf data format and compression level !--------------------------------------------------------------------------------------------------! SUBROUTINE spectra_header ( io ) USE control_parameters, & ONLY: dt_averaging_input_pr ! USE netcdf_interface, & ! ONLY: netcdf_data_format_string, & ! netcdf_deflate IMPLICIT NONE ! CHARACTER (LEN=40) :: output_format !< internal string INTEGER(iwp) :: i !< internal counter INTEGER(iwp), INTENT(IN) :: io !< unit of the output file ! !-- Spectra output IF ( dt_dosp /= 9999999.9_wp ) THEN WRITE ( io, 1 ) ! output_format = netcdf_data_format_string ! IF ( netcdf_deflate == 0 ) THEN ! WRITE ( io, 2 ) output_format ! ELSE ! WRITE ( io, 3 ) TRIM( output_format ), netcdf_deflate ! ENDIF WRITE ( io, 2 ) 'see profiles or other quantities' WRITE ( io, 4 ) dt_dosp IF ( skip_time_dosp /= 0.0_wp ) WRITE ( io, 5 ) skip_time_dosp WRITE ( io, 6 ) ( data_output_sp(i), i = 1,10 ), & ( spectra_direction(i), i = 1,10 ), & ( comp_spectra_level(i), i = 1,100 ), & averaging_interval_sp, dt_averaging_input_pr ENDIF 1 FORMAT (' Spectra:') 2 FORMAT (' Output format: ',A/) ! 3 FORMAT (' Output format: ',A, ' compressed with level: ',I1/) 4 FORMAT (' Output every ',F7.1,' s'/) 5 FORMAT (' No output during initial ',F8.2,' s') 6 FORMAT (' Arrays: ', 10(A5,',')/ & ' Directions: ', 10(A5,',')/ & ' height levels k = ', 20(I3,',')/ & ' ', 20(I3,',')/ & ' ', 20(I3,',')/ & ' ', 20(I3,',')/ & ' ', 19(I3,','),I3,'.'/ & ' Time averaged over ', F7.1, ' s,' / & ' Profiles for the time averaging are taken every ', & F6.1,' s') END SUBROUTINE spectra_header !--------------------------------------------------------------------------------------------------! ! Description: ! ------------ !> @todo Missing subroutine description. !--------------------------------------------------------------------------------------------------! SUBROUTINE calc_spectra USE arrays_3d, & ONLY: d #if defined( __parallel ) USE arrays_3d, & ONLY: tend #endif USE control_parameters, & ONLY: bc_lr_cyc, & bc_ns_cyc, & message_string, & psolver USE cpulog, & ONLY: cpu_log, & log_point USE fft_xy, & ONLY: fft_init USE indices, & ONLY: nxl, & nxr, & nyn, & nys, & nzb, & nzt USE kinds USE pegrid, & ONLY: myid #if defined( __parallel ) USE pegrid, & ONLY: pdims #endif IMPLICIT NONE INTEGER(iwp) :: m !< INTEGER(iwp) :: pr !< ! !-- Check if user gave any levels for spectra to be calculated IF ( comp_spectra_level(1) == 999999 ) RETURN CALL cpu_log( log_point(30), 'calc_spectra', 'start' ) ! !-- Initialize spectra related quantities CALL spectra_init ! !-- Initialize ffts CALL fft_init ! !-- Reallocate array d in required size IF ( psolver(1:9) == 'multigrid' ) THEN DEALLOCATE( d ) ALLOCATE( d(nzb+1:nzt,nys:nyn,nxl:nxr) ) ENDIF m = 1 DO WHILE ( data_output_sp(m) /= ' ' .AND. m <= 10 ) ! !-- Transposition from z --> x ( y --> x in case of a 1d-decomposition along x) IF ( INDEX( spectra_direction(m), 'x' ) /= 0 ) THEN ! !-- Calculation of spectra works for cyclic boundary conditions only IF ( .NOT. bc_lr_cyc ) THEN message_string = 'non-cyclic lateral boundaries along x do' // & ' not & allow calculation of spectra along x' CALL message( 'calc_spectra', 'PA0160', 1, 2, 0, 6, 0 ) ENDIF CALL preprocess_spectra( m, pr ) #if defined( __parallel ) IF ( pdims(2) /= 1 ) THEN CALL resort_for_zx( d, tend ) CALL transpose_zx( tend, d ) ELSE CALL transpose_yxd( d, d ) ENDIF CALL calc_spectra_x( d, m ) #else message_string = 'sorry, calculation of spectra in non parallel mode& is still not ' // & 'realized' CALL message( 'calc_spectra', 'PA0161', 1, 2, 0, 6, 0 ) #endif ENDIF ! !-- Transposition from z --> y (d is rearranged only in case of a 1d-decomposition along x) IF ( INDEX( spectra_direction(m), 'y' ) /= 0 ) THEN ! !-- Calculation of spectra works for cyclic boundary conditions only IF ( .NOT. bc_ns_cyc ) THEN IF ( myid == 0 ) THEN message_string = 'non-cyclic lateral boundaries along y' // & ' do not & allow calculation of spectra along y' CALL message( 'calc_spectra', 'PA0162', 1, 2, 0, 6, 0 ) ENDIF CALL local_stop ENDIF CALL preprocess_spectra( m, pr ) #if defined( __parallel ) CALL transpose_zyd( d, d ) CALL calc_spectra_y( d, m ) #else message_string = 'sorry, calculation of spectra in non parallel mode& is still not ' // & 'realized' CALL message( 'calc_spectra', 'PA0161', 1, 2, 0, 6, 0 ) #endif ENDIF ! !-- Increase counter for next spectrum m = m + 1 ENDDO ! !-- Increase counter for averaging process in routine plot_spectra average_count_sp = average_count_sp + 1 CALL cpu_log( log_point(30), 'calc_spectra', 'stop' ) END SUBROUTINE calc_spectra !--------------------------------------------------------------------------------------------------! ! Description: ! ------------ !> @todo Missing subroutine description. !--------------------------------------------------------------------------------------------------! SUBROUTINE preprocess_spectra( m, pr ) USE arrays_3d, & ONLY: d, & pt, & q, & s, & u, & v, & w USE indices, & ONLY: ngp_2dh, & nxl, & nxr, & nyn, & nys, & nzb, & nzt USE kinds #if defined( __parallel ) USE MPI USE pegrid, & ONLY: collective_wait, & comm2d, & ierr #endif USE statistics, & ONLY: hom IMPLICIT NONE INTEGER(iwp) :: i !< INTEGER(iwp) :: j !< INTEGER(iwp) :: k !< INTEGER(iwp) :: m !< INTEGER(iwp) :: pr !< REAL(wp), DIMENSION(nzb:nzt+1) :: var_d_l !< SELECT CASE ( TRIM( data_output_sp(m) ) ) CASE ( 'u' ) pr = 1 d(nzb+1:nzt,nys:nyn,nxl:nxr) = u(nzb+1:nzt,nys:nyn,nxl:nxr) CASE ( 'v' ) pr = 2 d(nzb+1:nzt,nys:nyn,nxl:nxr) = v(nzb+1:nzt,nys:nyn,nxl:nxr) CASE ( 'w' ) pr = 3 d(nzb+1:nzt,nys:nyn,nxl:nxr) = w(nzb+1:nzt,nys:nyn,nxl:nxr) CASE ( 'theta' ) pr = 4 d(nzb+1:nzt,nys:nyn,nxl:nxr) = pt(nzb+1:nzt,nys:nyn,nxl:nxr) CASE ( 'q' ) pr = 41 d(nzb+1:nzt,nys:nyn,nxl:nxr) = q(nzb+1:nzt,nys:nyn,nxl:nxr) CASE ( 's' ) pr = 117 d(nzb+1:nzt,nys:nyn,nxl:nxr) = s(nzb+1:nzt,nys:nyn,nxl:nxr) CASE DEFAULT ! !-- The DEFAULT case is reached either if the parameter data_output_sp(m) contains a wrong !-- character string or if the user has coded a special case in the user interface. There, the !-- subroutine user_spectra checks which of these two conditions applies. CALL user_spectra( 'preprocess', m, pr ) END SELECT ! !-- Subtract horizontal mean from the array, for which spectra have to be calculated. Moreover, !-- calculate variance of the respective quantitiy, later used for normalizing spectra output. var_d_l(:) = 0.0_wp DO i = nxl, nxr DO j = nys, nyn DO k = nzb+1, nzt d(k,j,i) = d(k,j,i) - hom(k,1,pr,0) var_d_l(k) = var_d_l(k) + d(k,j,i) * d(k,j,i) ENDDO ENDDO ENDDO ! !-- Compute total variance from local variances var_d(:) = 0.0_wp #if defined( __parallel ) IF ( collective_wait ) CALL MPI_BARRIER( comm2d, ierr ) CALL MPI_ALLREDUCE( var_d_l(0), var_d(0), nzt+1-nzb, MPI_REAL, MPI_SUM, comm2d, ierr ) #else var_d(:) = var_d_l(:) #endif var_d(:) = var_d(:) / ngp_2dh(0) END SUBROUTINE preprocess_spectra !--------------------------------------------------------------------------------------------------! ! Description: ! ------------ !> @todo Missing subroutine description. !--------------------------------------------------------------------------------------------------! #if defined( __parallel ) SUBROUTINE calc_spectra_x( ddd, m ) USE fft_xy, & ONLY: fft_x_1d USE grid_variables, & ONLY: dx USE indices, & ONLY: nx, & ny USE kinds USE MPI USE pegrid, & ONLY: comm2d, & ierr, & myid USE transpose_indices, & ONLY: nyn_x, & nys_x, & nzb_x, & nzt_x IMPLICIT NONE INTEGER(iwp) :: i !< INTEGER(iwp) :: j !< INTEGER(iwp) :: k !< INTEGER(iwp) :: m !< INTEGER(iwp) :: n !< REAL(wp) :: exponent !< REAL(wp) :: sum_spec_dum !< wavenumber-integrated spectrum REAL(wp), DIMENSION(0:nx) :: work !< REAL(wp), DIMENSION(0:nx/2) :: sums_spectra_l !< REAL(wp), DIMENSION(0:nx/2,100) :: sums_spectra !< REAL(wp), DIMENSION(0:nx,nys_x:nyn_x,nzb_x:nzt_x) :: ddd !< ! !-- Exponent for geometric average exponent = 1.0_wp / ( ny + 1.0_wp ) ! !-- Loop over all levels defined by the user n = 1 DO WHILE ( comp_spectra_level(n) /= 999999 .AND. n <= 100 ) k = comp_spectra_level(n) ! !-- Calculate FFT only if the corresponding level is situated on this PE IF ( k >= nzb_x .AND. k <= nzt_x ) THEN DO j = nys_x, nyn_x work = ddd(0:nx,j,k) CALL fft_x_1d( work, 'forward' ) ddd(0,j,k) = dx * work(0)**2 DO i = 1, nx/2 ddd(i,j,k) = dx * ( work(i)**2 + work(nx+1-i)**2 ) ENDDO ENDDO ! !-- Local sum and geometric average of these spectra (WARNING: no global sum should be !-- performed, because floating point overflow may occur) DO i = 0, nx/2 sums_spectra_l(i) = 1.0_wp DO j = nys_x, nyn_x sums_spectra_l(i) = sums_spectra_l(i) * ddd(i,j,k)**exponent ENDDO ENDDO ELSE sums_spectra_l = 1.0_wp ENDIF ! !-- Global sum of spectra on PE0 (from where they are written on file) sums_spectra(:,n) = 0.0_wp #if defined( __parallel ) CALL MPI_BARRIER( comm2d, ierr ) ! Necessary? CALL MPI_REDUCE( sums_spectra_l(0), sums_spectra(0,n), nx/2+1, MPI_REAL, MPI_PROD, 0, & comm2d, ierr ) #else sums_spectra(:,n) = sums_spectra_l #endif ! !-- Normalize spectra by variance sum_spec_dum = SUM( sums_spectra(1:nx/2,n) ) IF ( sum_spec_dum /= 0.0_wp ) THEN sums_spectra(1:nx/2,n) = sums_spectra(1:nx/2,n) * var_d(k) / sum_spec_dum ENDIF n = n + 1 ENDDO n = n - 1 IF ( myid == 0 ) THEN ! !-- Sum of spectra for later averaging (see routine data_output_spectra) DO i = 1, nx/2 DO k = 1, n spectrum_x(i,k,m) = spectrum_x(i,k,m) + sums_spectra(i,k) ENDDO ENDDO ENDIF ! !-- n_sp_x is needed by data_output_spectra_x n_sp_x = n END SUBROUTINE calc_spectra_x #endif !--------------------------------------------------------------------------------------------------! ! Description: ! ------------ !> @todo Missing subroutine description. !--------------------------------------------------------------------------------------------------! #if defined( __parallel ) SUBROUTINE calc_spectra_y( ddd, m ) USE fft_xy, & ONLY: fft_y_1d USE grid_variables, & ONLY: dy USE indices, & ONLY: nx, & ny USE kinds USE MPI USE pegrid, & ONLY: comm2d, & ierr, & myid USE transpose_indices, & ONLY: nxl_yd, & nxr_yd, & nzb_yd, & nzt_yd IMPLICIT NONE INTEGER(iwp) :: i !< INTEGER(iwp) :: j !< INTEGER(iwp) :: k !< INTEGER(iwp) :: m !< INTEGER(iwp) :: n !< REAL(wp) :: exponent !< REAL(wp) :: sum_spec_dum !< wavenumber-integrated spectrum REAL(wp), DIMENSION(0:ny) :: work !< REAL(wp), DIMENSION(0:ny/2) :: sums_spectra_l !< REAL(wp), DIMENSION(0:ny/2,100) :: sums_spectra !< REAL(wp), DIMENSION(0:ny,nxl_yd:nxr_yd,nzb_yd:nzt_yd) :: ddd !< ! !-- Exponent for geometric average exponent = 1.0_wp / ( nx + 1.0_wp ) ! !-- Loop over all levels defined by the user n = 1 DO WHILE ( comp_spectra_level(n) /= 999999 .AND. n <= 100 ) k = comp_spectra_level(n) ! !-- Calculate FFT only if the corresponding level is situated on this PE IF ( k >= nzb_yd .AND. k <= nzt_yd ) THEN DO i = nxl_yd, nxr_yd work = ddd(0:ny,i,k) CALL fft_y_1d( work, 'forward' ) ddd(0,i,k) = dy * work(0)**2 DO j = 1, ny/2 ddd(j,i,k) = dy * ( work(j)**2 + work(ny+1-j)**2 ) ENDDO ENDDO ! !-- Local sum and geometric average of these spectra (WARNING: no global sum should be !-- performed, because floating point overflow may occur) DO j = 0, ny/2 sums_spectra_l(j) = 1.0_wp DO i = nxl_yd, nxr_yd sums_spectra_l(j) = sums_spectra_l(j) * ddd(j,i,k)**exponent ENDDO ENDDO ELSE sums_spectra_l = 1.0_wp ENDIF ! !-- Global sum of spectra on PE0 (from where they are written on file) sums_spectra(:,n) = 0.0_wp #if defined( __parallel ) CALL MPI_BARRIER( comm2d, ierr ) ! Necessary? CALL MPI_REDUCE( sums_spectra_l(0), sums_spectra(0,n), ny/2+1, MPI_REAL, MPI_PROD, 0, & comm2d, ierr ) #else sums_spectra(:,n) = sums_spectra_l #endif ! !-- Normalize spectra by variance sum_spec_dum = SUM( sums_spectra(1:ny/2,n) ) IF ( sum_spec_dum /= 0.0_wp ) THEN sums_spectra(1:ny/2,n) = sums_spectra(1:ny/2,n) * var_d(k) / sum_spec_dum ENDIF n = n + 1 ENDDO n = n - 1 IF ( myid == 0 ) THEN ! !-- Sum of spectra for later averaging (see routine data_output_spectra) DO j = 1, ny/2 DO k = 1, n spectrum_y(j,k,m) = spectrum_y(j,k,m) + sums_spectra(j,k) ENDDO ENDDO ENDIF ! !-- n_sp_y is needed by data_output_spectra_y n_sp_y = n END SUBROUTINE calc_spectra_y #endif END MODULE spectra_mod