Home

Context Navigation

netcdf_data_input_mod.f90 @ 4245

Last change on this file since 4245 was 4245, checked in by pavelkrc, 3 years ago
Merge branch resler into trunk
Property svn:keywords set to `Id`
File size: 276.7 KB

Line
1	!> @file netcdf_data_input_mod.f90
2	!------------------------------------------------------------------------------!
3	! This file is part of the PALM model system.
4	!
5	! PALM is free software: you can redistribute it and/or modify it under the
6	! terms of the GNU General Public License as published by the Free Software
7	! Foundation, either version 3 of the License, or (at your option) any later
8	! version.
9	!
10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
13	!
14	! You should have received a copy of the GNU General Public License along with
15	! PALM. If not, see <http://www.gnu.org/licenses/>.
16	!
17	! Copyright 1997-2019 Leibniz Universitaet Hannover
18	!------------------------------------------------------------------------------!
19	!
20	! Current revisions:
21	! -----------------
22	!
23	!
24	! Former revisions:
25	! -----------------
26	! $Id: netcdf_data_input_mod.f90 4245 2019-09-30 08:40:37Z pavelkrc $
27	! Add reading and processing of building_surface_pars
28	!
29	! 4226 2019-09-10 17:03:24Z suehring
30	! - Netcdf input routine for dimension length renamed
31	! - Move offline-nesting-specific checks to nesting_offl_mod
32	! - Module-specific input of boundary data for offline nesting moved to
33	! nesting_offl_mod
34	! - Define module specific data type for offline nesting in nesting_offl_mod
35	!
36	! 4190 2019-08-27 15:42:37Z suehring
37	! type real_1d changed to real_1d_3d
38	!
39	! 4186 2019-08-23 16:06:14Z suehring
40	! Minor formatting adjustments
41	!
42	! 4182 2019-08-22 15:20:23Z scharf
43	! Corrected "Former revisions" section
44	!
45	! 4178 2019-08-21 11:13:06Z suehring
46	! Implement input of external radiation forcing. Therefore, provide public
47	! subroutines and variables.
48	!
49	! 4150 2019-08-08 20:00:47Z suehring
50	! Some variables are given the public attribute, in order to call netcdf input
51	! from single routines
52	!
53	! 4125 2019-07-29 13:31:44Z suehring
54	! To enable netcdf-parallel access for lateral boundary data (dynamic input),
55	! zero number of elements are passed to the respective get_variable routine
56	! for non-boundary cores.
57	!
58	! 4100 2019-07-17 08:11:29Z forkel
59	! Made check for input_pids_dynamic and 'inifor' more general
60	!
61	! 4012 2019-05-31 15:19:05Z monakurppa
62	!
63	! 3994 2019-05-22 18:08:09Z suehring
64	! Remove single location message
65	!
66	! 3976 2019-05-15 11:02:34Z hellstea
67	! Remove unused variables from last commit
68	!
69	! 3969 2019-05-13 12:14:33Z suehring
70	! - clean-up index notations for emission_values to eliminate magic numbers
71	! - introduce temporary variable dum_var_5d as well as subroutines
72	! get_var_5d_real and get_var_5d_real_dynamic
73	! - remove emission-specific code in generic get_variable routines
74	! - in subroutine netcdf_data_input_chemistry_data change netCDF LOD 1
75	! (default) emission_values to the following index order:
76	! z, y, x, species, category
77	! - in subroutine netcdf_data_input_chemistry_data
78	! changed netCDF LOD 2 pre-processed emission_values to the following index
79	! order: time, z, y, x, species
80	! - in type chem_emis_att_type replace nspec with n_emiss_species
81	! but retained nspec for backward compatibility with salsa_mod. (E.C. Chan)
82	!
83	! 3961 2019-05-08 16:12:31Z suehring
84	! Revise checks for building IDs and types
85	!
86	! 3943 2019-05-02 09:50:41Z maronga
87	! Temporarily disabled some (faulty) checks for static driver.
88	!
89	! 3942 2019-04-30 13:08:30Z kanani
90	! Fix: increase LEN of all NetCDF attribute values (caused crash in
91	! netcdf_create_global_atts due to insufficient length)
92	!
93	! 3941 2019-04-30 09:48:33Z suehring
94	! Move check for grid dimension to an earlier point in time when first array
95	! is read.
96	! Improve checks for building types / IDs with respect to 2D/3D buildings.
97	!
98	! 3885 2019-04-11 11:29:34Z kanani
99	! Changes related to global restructuring of location messages and introduction
100	! of additional debug messages
101	!
102	! 3864 2019-04-05 09:01:56Z monakurppa
103	! get_variable_4d_to_3d_real modified to enable read in data of type
104	! data(t,y,x,n) one timestep at a time + some routines made public
105	!
106	! 3855 2019-04-03 10:00:59Z suehring
107	! Typo removed
108	!
109	! 3854 2019-04-02 16:59:33Z suehring
110	! Bugfix in one of the checks. Typo removed.
111	!
112	! 3744 2019-02-15 18:38:58Z suehring
113	! Enable mesoscale offline nesting for chemistry variables as well as
114	! initialization of chemistry via dynamic input file.
115	!
116	! 3705 2019-01-29 19:56:39Z suehring
117	! Interface for attribute input of 8-bit and 32-bit integer
118	!
119	! 3704 2019-01-29 19:51:41Z suehring
120	! unused variables removed
121	!
122	! 2696 2017-12-14 17:12:51Z kanani
123	! Initial revision (suehring)
124	!
125	! Authors:
126	! --------
127	! @author Matthias Suehring
128	! @author Edward C. Chan
129	! @author Emanuele Russo
130	!
131	! Description:
132	! ------------
133	!> Modulue contains routines to input data according to Palm input data
134	!> standart using dynamic and static input files.
135	!> @todo - Chemistry: revise reading of netcdf file and ajdust formatting
136	!> according to standard!!! (ecc/done)
137	!> @todo - Order input alphabetically
138	!> @todo - Revise error messages and error numbers
139	!> @todo - Input of missing quantities (chemical species, emission rates)
140	!> @todo - Defninition and input of still missing variable attributes
141	!> (ecc/what are they?)
142	!> @todo - Input of initial geostrophic wind profiles with cyclic conditions.
143	!> @todo - remove z dimension from default_emission_data nad preproc_emission_data
144	! and correpsonding subroutines get_var_5d_real and get_var_5d_dynamic (ecc)
145	!> @todo - decpreciate chem_emis_att_type@nspec (ecc)
146	!> @todo - depreciate subroutines get_variable_4d_to_3d_real and
147	!> get_variable_5d_to_4d_real (ecc)
148	!> @todo - introduce useful debug_message(s)
149	!------------------------------------------------------------------------------!
150	MODULE netcdf_data_input_mod
151
152	USE control_parameters, &
153	ONLY: coupling_char, io_blocks, io_group
154
155	USE cpulog, &
156	ONLY: cpu_log, log_point_s
157
158	USE indices, &
159	ONLY: nbgp
160
161	USE kinds
162
163	#if defined ( __netcdf )
164	USE NETCDF
165	#endif
166
167	USE pegrid
168
169	USE surface_mod, &
170	ONLY: ind_pav_green, ind_veg_wall, ind_wat_win
171	!
172	!-- Define type for dimensions.
173	TYPE dims_xy
174	INTEGER(iwp) :: nx !< dimension length in x
175	INTEGER(iwp) :: ny !< dimension length in y
176	INTEGER(iwp) :: nz !< dimension length in z
177	REAL(wp), DIMENSION(:), ALLOCATABLE :: x !< dimension array in x
178	REAL(wp), DIMENSION(:), ALLOCATABLE :: y !< dimension array in y
179	REAL(wp), DIMENSION(:), ALLOCATABLE :: z !< dimension array in z
180	END TYPE dims_xy
181	TYPE init_type
182
183	CHARACTER(LEN=16) :: init_char = 'init_atmosphere_' !< leading substring for init variables
184	CHARACTER(LEN=23) :: origin_time = '2000-01-01 00:00:00 +00' !< reference time of input data
185	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names_chem !< list of chemistry variable names that can potentially be on file
186
187	INTEGER(iwp) :: lod_msoil !< level of detail - soil moisture
188	INTEGER(iwp) :: lod_pt !< level of detail - pt
189	INTEGER(iwp) :: lod_q !< level of detail - q
190	INTEGER(iwp) :: lod_tsoil !< level of detail - soil temperature
191	INTEGER(iwp) :: lod_u !< level of detail - u-component
192	INTEGER(iwp) :: lod_v !< level of detail - v-component
193	INTEGER(iwp) :: lod_w !< level of detail - w-component
194	INTEGER(iwp) :: nx !< number of scalar grid points along x in dynamic input file
195	INTEGER(iwp) :: nxu !< number of u grid points along x in dynamic input file
196	INTEGER(iwp) :: ny !< number of scalar grid points along y in dynamic input file
197	INTEGER(iwp) :: nyv !< number of v grid points along y in dynamic input file
198	INTEGER(iwp) :: nzs !< number of vertical soil levels in dynamic input file
199	INTEGER(iwp) :: nzu !< number of vertical levels on scalar grid in dynamic input file
200	INTEGER(iwp) :: nzw !< number of vertical levels on w grid in dynamic input file
201
202	INTEGER(iwp), DIMENSION(:), ALLOCATABLE :: lod_chem !< level of detail - chemistry variables
203
204	LOGICAL :: from_file_msoil = .FALSE. !< flag indicating whether soil moisture is already initialized from file
205	LOGICAL :: from_file_pt = .FALSE. !< flag indicating whether pt is already initialized from file
206	LOGICAL :: from_file_q = .FALSE. !< flag indicating whether q is already initialized from file
207	LOGICAL :: from_file_tsoil = .FALSE. !< flag indicating whether soil temperature is already initialized from file
208	LOGICAL :: from_file_u = .FALSE. !< flag indicating whether u is already initialized from file
209	LOGICAL :: from_file_ug = .FALSE. !< flag indicating whether ug is already initialized from file
210	LOGICAL :: from_file_v = .FALSE. !< flag indicating whether v is already initialized from file
211	LOGICAL :: from_file_vg = .FALSE. !< flag indicating whether ug is already initialized from file
212	LOGICAL :: from_file_w = .FALSE. !< flag indicating whether w is already initialized from file
213
214	LOGICAL, DIMENSION(:), ALLOCATABLE :: from_file_chem !< flag indicating whether chemistry variable is read from file
215
216	REAL(wp) :: fill_msoil !< fill value for soil moisture
217	REAL(wp) :: fill_pt !< fill value for pt
218	REAL(wp) :: fill_q !< fill value for q
219	REAL(wp) :: fill_tsoil !< fill value for soil temperature
220	REAL(wp) :: fill_u !< fill value for u
221	REAL(wp) :: fill_v !< fill value for v
222	REAL(wp) :: fill_w !< fill value for w
223	REAL(wp) :: latitude = 0.0_wp !< latitude of the lower left corner
224	REAL(wp) :: longitude = 0.0_wp !< longitude of the lower left corner
225	REAL(wp) :: origin_x = 500000.0_wp !< UTM easting of the lower left corner
226	REAL(wp) :: origin_y = 0.0_wp !< UTM northing of the lower left corner
227	REAL(wp) :: origin_z = 0.0_wp !< reference height of input data
228	REAL(wp) :: rotation_angle = 0.0_wp !< rotation angle of input data
229
230	REAL(wp), DIMENSION(:), ALLOCATABLE :: fill_chem !< fill value - chemistry variables
231	REAL(wp), DIMENSION(:), ALLOCATABLE :: msoil_1d !< initial vertical profile of soil moisture
232	REAL(wp), DIMENSION(:), ALLOCATABLE :: pt_init !< initial vertical profile of pt
233	REAL(wp), DIMENSION(:), ALLOCATABLE :: q_init !< initial vertical profile of q
234	REAL(wp), DIMENSION(:), ALLOCATABLE :: tsoil_1d !< initial vertical profile of soil temperature
235	REAL(wp), DIMENSION(:), ALLOCATABLE :: u_init !< initial vertical profile of u
236	REAL(wp), DIMENSION(:), ALLOCATABLE :: ug_init !< initial vertical profile of ug
237	REAL(wp), DIMENSION(:), ALLOCATABLE :: v_init !< initial vertical profile of v
238	REAL(wp), DIMENSION(:), ALLOCATABLE :: vg_init !< initial vertical profile of ug
239	REAL(wp), DIMENSION(:), ALLOCATABLE :: w_init !< initial vertical profile of w
240	REAL(wp), DIMENSION(:), ALLOCATABLE :: z_soil !< vertical levels in soil in dynamic input file, used for interpolation
241	REAL(wp), DIMENSION(:), ALLOCATABLE :: zu_atmos !< vertical levels at scalar grid in dynamic input file, used for interpolation
242	REAL(wp), DIMENSION(:), ALLOCATABLE :: zw_atmos !< vertical levels at w grid in dynamic input file, used for interpolation
243
244	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: chem_init !< initial vertical profiles of chemistry variables
245
246
247	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: msoil_3d !< initial 3d soil moisture provide by Inifor and interpolated onto soil grid
248	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: tsoil_3d !< initial 3d soil temperature provide by Inifor and interpolated onto soil grid
249
250	END TYPE init_type
251
252	!-- Data type for the general information of chemistry emissions, do not dependent on the particular chemical species
253	TYPE chem_emis_att_type
254
255	!-DIMENSIONS
256
257	INTEGER(iwp) :: nspec=0 !< no of chem species provided in emission_values
258	INTEGER(iwp) :: n_emiss_species=0 !< no of chem species provided in emission_values
259	!< same function as nspec, which will be depreciated (ecc)
260
261	INTEGER(iwp) :: ncat=0 !< number of emission categories
262	INTEGER(iwp) :: nvoc=0 !< number of VOC components
263	INTEGER(iwp) :: npm=0 !< number of PM components
264	INTEGER(iwp) :: nnox=2 !< number of NOx components: NO and NO2
265	INTEGER(iwp) :: nsox=2 !< number of SOX components: SO and SO4
266	INTEGER(iwp) :: nhoursyear !< number of hours of a specific year in the HOURLY mode
267	!< of the default mode
268	INTEGER(iwp) :: nmonthdayhour !< number of month days and hours in the MDH mode
269	!< of the default mode
270	INTEGER(iwp) :: dt_emission !< Number of emissions timesteps for one year
271	!< in the pre-processed emissions case
272	!-- 1d emission input variables
273	CHARACTER (LEN=25),ALLOCATABLE, DIMENSION(:) :: pm_name !< Names of PM components
274	CHARACTER (LEN=25),ALLOCATABLE, DIMENSION(:) :: cat_name !< Emission category names
275	CHARACTER (LEN=25),ALLOCATABLE, DIMENSION(:) :: species_name !< Names of emission chemical species
276	CHARACTER (LEN=25),ALLOCATABLE, DIMENSION(:) :: voc_name !< Names of VOCs components
277	CHARACTER (LEN=25) :: units !< Units
278
279	INTEGER(iwp) :: i_hour !< indices for assigning emission values at different timesteps
280	INTEGER(iwp),ALLOCATABLE, DIMENSION(:) :: cat_index !< Indices for emission categories
281	INTEGER(iwp),ALLOCATABLE, DIMENSION(:) :: species_index !< Indices for emission chem species
282
283	REAL(wp),ALLOCATABLE, DIMENSION(:) :: xm !< Molecular masses of emission chem species
284
285	!-- 2d emission input variables
286	REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: hourly_emis_time_factor !< Time factors for HOURLY emissions (DEFAULT mode)
287	REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: mdh_emis_time_factor !< Time factors for MDH emissions (DEFAULT mode)
288	REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: nox_comp !< Composition of NO and NO2
289	REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: sox_comp !< Composition of SO2 and SO4
290	REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: voc_comp !< Composition of VOC components (not fixed)
291
292	!-- 3d emission input variables
293	REAL(wp),ALLOCATABLE, DIMENSION(:,:,:) :: pm_comp !< Composition of PM components (not fixed)
294
295	END TYPE chem_emis_att_type
296
297
298	!-- Data type for the values of chemistry emissions
299	TYPE chem_emis_val_type
300
301	!REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: stack_height !< stack height (ecc / to be implemented)
302	REAL(wp),ALLOCATABLE, DIMENSION(:,:,:) :: default_emission_data !< Emission input values for LOD1 (DEFAULT mode)
303	REAL(wp),ALLOCATABLE, DIMENSION(:,:,:,:) :: preproc_emission_data !< Emission input values for LOD2 (PRE-PROCESSED mode)
304
305	END TYPE chem_emis_val_type
306
307	!
308	!-- Define data structures for different input data types.
309	!-- 8-bit Integer 2D
310	TYPE int_2d_8bit
311	INTEGER(KIND=1) :: fill = -127 !< fill value
312	INTEGER(KIND=1), DIMENSION(:,:), ALLOCATABLE :: var !< respective variable
313
314	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
315	END TYPE int_2d_8bit
316	!
317	!-- 8-bit Integer 3D
318	TYPE int_3d_8bit
319	INTEGER(KIND=1) :: fill = -127 !< fill value
320	INTEGER(KIND=1), DIMENSION(:,:,:), ALLOCATABLE :: var_3d !< respective variable
321
322	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
323	END TYPE int_3d_8bit
324	!
325	!-- 32-bit Integer 2D
326	TYPE int_2d_32bit
327	INTEGER(iwp) :: fill = -9999 !< fill value
328	INTEGER(iwp), DIMENSION(:,:), ALLOCATABLE :: var !< respective variable
329
330	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
331	END TYPE int_2d_32bit
332	!
333	!-- Define data type to read 1D or 3D real variables.
334	TYPE real_1d_3d
335	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
336
337	INTEGER(iwp) :: lod = -1 !< level-of-detail
338
339	REAL(wp) :: fill = -9999.9_wp !< fill value
340
341	REAL(wp), DIMENSION(:), ALLOCATABLE :: var1d !< respective 1D variable
342	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: var3d !< respective 3D variable
343	END TYPE real_1d_3d
344	!
345	!-- Define data type to read 2D real variables
346	TYPE real_2d
347	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
348
349	INTEGER(iwp) :: lod !< level-of-detail
350
351	REAL(wp) :: fill = -9999.9_wp !< fill value
352	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: var !< respective variable
353	END TYPE real_2d
354
355	!
356	!-- Define data type to read 3D real variables
357	TYPE real_3d
358	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
359
360	INTEGER(iwp) :: nz !< number of grid points along vertical dimension
361
362	REAL(wp) :: fill = -9999.9_wp !< fill value
363	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: var !< respective variable
364	END TYPE real_3d
365	!
366	!-- Define data structure where the dimension and type of the input depends
367	!-- on the given level of detail.
368	!-- For buildings, the input is either 2D float, or 3d byte.
369	TYPE build_in
370	INTEGER(iwp) :: lod = 1 !< level of detail
371	INTEGER(KIND=1) :: fill2 = -127 !< fill value for lod = 2
372	INTEGER(iwp) :: nz !< number of vertical layers in file
373	INTEGER(KIND=1), DIMENSION(:,:,:), ALLOCATABLE :: var_3d !< 3d variable (lod = 2)
374
375	REAL(wp), DIMENSION(:), ALLOCATABLE :: z !< vertical coordinate for 3D building, used for consistency check
376
377	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
378
379	REAL(wp) :: fill1 = -9999.9_wp !< fill values for lod = 1
380	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: var_2d !< 2d variable (lod = 1)
381	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: oro_max !< terraing height under particular buildings
382	END TYPE build_in
383
384	!
385	!-- For soil_type, the input is either 2D or 3D one-byte integer.
386	TYPE soil_in
387	INTEGER(iwp) :: lod = 1 !< level of detail
388	INTEGER(KIND=1) :: fill = -127 !< fill value for lod = 2
389	INTEGER(KIND=1), DIMENSION(:,:), ALLOCATABLE :: var_2d !< 2d variable (lod = 1)
390	INTEGER(KIND=1), DIMENSION(:,:,:), ALLOCATABLE :: var_3d !< 3d variable (lod = 2)
391
392	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
393	END TYPE soil_in
394
395	!
396	!-- Define data type for fractions between surface types
397	TYPE fracs
398	INTEGER(iwp) :: nf !< total number of fractions
399	INTEGER(iwp), DIMENSION(:), ALLOCATABLE :: nfracs !< dimension array for fraction
400
401	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
402
403	REAL(wp) :: fill = -9999.9_wp !< fill value
404	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: frac !< respective fraction between different surface types
405	END TYPE fracs
406	!
407	!-- Data type for parameter lists, Depending on the given level of detail,
408	!-- the input is 3D or 4D
409	TYPE pars
410	INTEGER(iwp) :: lod = 1 !< level of detail
411	INTEGER(iwp) :: np !< total number of parameters
412	INTEGER(iwp) :: nz !< vertical dimension - number of soil layers
413	INTEGER(iwp), DIMENSION(:), ALLOCATABLE :: layers !< dimension array for soil layers
414	INTEGER(iwp), DIMENSION(:), ALLOCATABLE :: pars !< dimension array for parameters
415
416	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
417
418	REAL(wp) :: fill = -9999.9_wp !< fill value
419	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: pars_xy !< respective parameters, level of detail = 1
420	REAL(wp), DIMENSION(:,:,:,:), ALLOCATABLE :: pars_xyz !< respective parameters, level of detail = 2
421	END TYPE pars
422	!
423	!-- Data type for surface parameter lists
424	TYPE pars_surf
425	INTEGER(iwp) :: np !< total number of parameters
426	INTEGER(iwp) :: nsurf !< number of local surfaces
427	INTEGER(iwp), DIMENSION(:,:,:), ALLOCATABLE :: index_ji !< index for beginning and end of surfaces at (j,i)
428	INTEGER(iwp), DIMENSION(:,:), ALLOCATABLE :: coords !< (k,j,i,norm_z,norm_y,norm_x)
429	!< k,j,i: surface position
430	!< norm_z,norm_y,norm_x: surface normal vector
431
432	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
433
434	REAL(wp) :: fill = -9999.9_wp !< fill value
435	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: pars !< respective parameters per surface
436	END TYPE pars_surf
437	!
438	!-- Define type for global file attributes
439	!-- Please refer to the PALM data standard for a detailed description of each
440	!-- attribute.
441	TYPE global_atts_type
442	CHARACTER(LEN=200) :: acronym = ' ' !< acronym of institution
443	CHARACTER(LEN=7) :: acronym_char = 'acronym' !< name of attribute
444	CHARACTER(LEN=200) :: author = ' ' !< first name, last name, email adress
445	CHARACTER(LEN=6) :: author_char = 'author' !< name of attribute
446	CHARACTER(LEN=200) :: campaign = 'PALM-4U' !< name of campaign
447	CHARACTER(LEN=8) :: campaign_char = 'campaign' !< name of attribute
448	CHARACTER(LEN=200) :: comment = ' ' !< comment to data
449	CHARACTER(LEN=7) :: comment_char = 'comment' !< name of attribute
450	CHARACTER(LEN=200) :: contact_person = ' ' !< first name, last name, email adress
451	CHARACTER(LEN=14) :: contact_person_char = 'contact_person' !< name of attribute
452	CHARACTER(LEN=200) :: conventions = 'CF-1.7' !< netCDF convention
453	CHARACTER(LEN=11) :: conventions_char = 'Conventions' !< name of attribute
454	CHARACTER(LEN=23 ) :: creation_time = ' ' !< creation time of data set
455	CHARACTER(LEN=13) :: creation_time_char = 'creation_time' !< name of attribute
456	CHARACTER(LEN=200) :: data_content = ' ' !< content of data set
457	CHARACTER(LEN=12) :: data_content_char = 'data_content' !< name of attribute
458	CHARACTER(LEN=200) :: dependencies = ' ' !< dependencies of data set
459	CHARACTER(LEN=12) :: dependencies_char = 'dependencies' !< name of attribute
460	CHARACTER(LEN=200) :: history = ' ' !< information about data processing
461	CHARACTER(LEN=7) :: history_char = 'history' !< name of attribute
462	CHARACTER(LEN=200) :: institution = ' ' !< name of responsible institution
463	CHARACTER(LEN=11) :: institution_char = 'institution' !< name of attribute
464	CHARACTER(LEN=200) :: keywords = ' ' !< keywords of data set
465	CHARACTER(LEN=8) :: keywords_char = 'keywords' !< name of attribute
466	CHARACTER(LEN=200) :: licence = ' ' !< licence of data set
467	CHARACTER(LEN=7) :: licence_char = 'licence' !< name of attribute
468	CHARACTER(LEN=200) :: location = ' ' !< place which refers to data set
469	CHARACTER(LEN=8) :: location_char = 'location' !< name of attribute
470	CHARACTER(LEN=10) :: origin_lat_char = 'origin_lat' !< name of attribute
471	CHARACTER(LEN=10) :: origin_lon_char = 'origin_lon' !< name of attribute
472	CHARACTER(LEN=23 ) :: origin_time = '2000-01-01 00:00:00 +00' !< reference time
473	CHARACTER(LEN=11) :: origin_time_char = 'origin_time' !< name of attribute
474	CHARACTER(LEN=8) :: origin_x_char = 'origin_x' !< name of attribute
475	CHARACTER(LEN=8) :: origin_y_char = 'origin_y' !< name of attribute
476	CHARACTER(LEN=8) :: origin_z_char = 'origin_z' !< name of attribute
477	CHARACTER(LEN=12) :: palm_version_char = 'palm_version' !< name of attribute
478	CHARACTER(LEN=200) :: references = ' ' !< literature referring to data set
479	CHARACTER(LEN=10) :: references_char = 'references' !< name of attribute
480	CHARACTER(LEN=14) :: rotation_angle_char = 'rotation_angle' !< name of attribute
481	CHARACTER(LEN=200) :: site = ' ' !< name of model domain
482	CHARACTER(LEN=4) :: site_char = 'site' !< name of attribute
483	CHARACTER(LEN=200) :: source = ' ' !< source of data set
484	CHARACTER(LEN=6) :: source_char = 'source' !< name of attribute
485	CHARACTER(LEN=200) :: title = ' ' !< title of data set
486	CHARACTER(LEN=5) :: title_char = 'title' !< name of attribute
487	CHARACTER(LEN=7) :: version_char = 'version' !< name of attribute
488
489	INTEGER(iwp) :: version !< version of data set
490
491	REAL(wp) :: origin_lat !< latitude of lower left corner
492	REAL(wp) :: origin_lon !< longitude of lower left corner
493	REAL(wp) :: origin_x !< easting (UTM coordinate) of lower left corner
494	REAL(wp) :: origin_y !< northing (UTM coordinate) of lower left corner
495	REAL(wp) :: origin_z !< reference height
496	REAL(wp) :: palm_version !< PALM version of data set
497	REAL(wp) :: rotation_angle !< rotation angle of coordinate system of data set
498	END TYPE global_atts_type
499	!
500	!-- Define type for coordinate reference system (crs)
501	TYPE crs_type
502	CHARACTER(LEN=200) :: epsg_code = 'EPSG:25831' !< EPSG code
503	CHARACTER(LEN=200) :: grid_mapping_name = 'transverse_mercator' !< name of grid mapping
504	CHARACTER(LEN=200) :: long_name = 'coordinate reference system' !< name of variable crs
505	CHARACTER(LEN=200) :: units = 'm' !< unit of crs
506
507	REAL(wp) :: false_easting = 500000.0_wp !< false easting
508	REAL(wp) :: false_northing = 0.0_wp !< false northing
509	REAL(wp) :: inverse_flattening = 298.257223563_wp !< 1/f (default for WGS84)
510	REAL(wp) :: latitude_of_projection_origin = 0.0_wp !< latitude of projection origin
511	REAL(wp) :: longitude_of_central_meridian = 3.0_wp !< longitude of central meridian of UTM zone (default: zone 31)
512	REAL(wp) :: longitude_of_prime_meridian = 0.0_wp !< longitude of prime meridian
513	REAL(wp) :: scale_factor_at_central_meridian = 0.9996_wp !< scale factor of UTM coordinates
514	REAL(wp) :: semi_major_axis = 6378137.0_wp !< length of semi major axis (default for WGS84)
515	END TYPE crs_type
516
517	!
518	!-- Define variables
519	TYPE(crs_type) :: coord_ref_sys !< coordinate reference system
520
521	TYPE(dims_xy) :: dim_static !< data structure for x, y-dimension in static input file
522
523	TYPE(init_type) :: init_3d !< data structure for the initialization of the 3D flow and soil fields
524	TYPE(init_type) :: init_model !< data structure for the initialization of the model
525
526	!
527	!-- Define 2D variables of type NC_BYTE
528	TYPE(int_2d_8bit) :: albedo_type_f !< input variable for albedo type
529	TYPE(int_2d_8bit) :: building_type_f !< input variable for building type
530	TYPE(int_2d_8bit) :: pavement_type_f !< input variable for pavenment type
531	TYPE(int_2d_8bit) :: street_crossing_f !< input variable for water type
532	TYPE(int_2d_8bit) :: street_type_f !< input variable for water type
533	TYPE(int_2d_8bit) :: vegetation_type_f !< input variable for vegetation type
534	TYPE(int_2d_8bit) :: water_type_f !< input variable for water type
535	!
536	!-- Define 3D variables of type NC_BYTE
537	TYPE(int_3d_8bit) :: building_obstruction_f !< input variable for building obstruction
538	TYPE(int_3d_8bit) :: building_obstruction_full !< input variable for building obstruction
539	!
540	!-- Define 2D variables of type NC_INT
541	TYPE(int_2d_32bit) :: building_id_f !< input variable for building ID
542	!
543	!-- Define 2D variables of type NC_FLOAT
544	TYPE(real_2d) :: terrain_height_f !< input variable for terrain height
545	TYPE(real_2d) :: uvem_irradiance_f !< input variable for uvem irradiance lookup table
546	TYPE(real_2d) :: uvem_integration_f !< input variable for uvem integration
547	!
548	!-- Define 3D variables of type NC_FLOAT
549	TYPE(real_3d) :: basal_area_density_f !< input variable for basal area density - resolved vegetation
550	TYPE(real_3d) :: leaf_area_density_f !< input variable for leaf area density - resolved vegetation
551	TYPE(real_3d) :: root_area_density_lad_f !< input variable for root area density - resolved vegetation
552	TYPE(real_3d) :: root_area_density_lsm_f !< input variable for root area density - parametrized vegetation
553	TYPE(real_3d) :: uvem_radiance_f !< input variable for uvem radiance lookup table
554	TYPE(real_3d) :: uvem_projarea_f !< input variable for uvem projection area lookup table
555	!
556	!-- Define input variable for buildings
557	TYPE(build_in) :: buildings_f !< input variable for buildings
558	!
559	!-- Define input variables for soil_type
560	TYPE(soil_in) :: soil_type_f !< input variable for soil type
561
562	TYPE(fracs) :: surface_fraction_f !< input variable for surface fraction
563
564	TYPE(pars) :: albedo_pars_f !< input variable for albedo parameters
565	TYPE(pars) :: building_pars_f !< input variable for building parameters
566	TYPE(pars) :: pavement_pars_f !< input variable for pavement parameters
567	TYPE(pars) :: pavement_subsurface_pars_f !< input variable for pavement parameters
568	TYPE(pars) :: soil_pars_f !< input variable for soil parameters
569	TYPE(pars) :: vegetation_pars_f !< input variable for vegetation parameters
570	TYPE(pars) :: water_pars_f !< input variable for water parameters
571
572	TYPE(pars_surf) :: building_surface_pars_f !< input variable for building surface parameters
573
574	TYPE(chem_emis_att_type) :: chem_emis_att !< Input Information of Chemistry Emission Data from netcdf
575	TYPE(chem_emis_val_type), ALLOCATABLE, DIMENSION(:) :: chem_emis !< Input Chemistry Emission Data from netcdf
576
577	CHARACTER(LEN=3) :: char_lod = 'lod' !< name of level-of-detail attribute in NetCDF file
578
579	CHARACTER(LEN=10) :: char_fill = '_FillValue' !< name of fill value attribute in NetCDF file
580
581	CHARACTER(LEN=100) :: input_file_static = 'PIDS_STATIC' !< Name of file which comprises static input data
582	CHARACTER(LEN=100) :: input_file_dynamic = 'PIDS_DYNAMIC' !< Name of file which comprises dynamic input data
583	CHARACTER(LEN=100) :: input_file_chem = 'PIDS_CHEM' !< Name of file which comprises chemistry input data
584	CHARACTER(LEN=100) :: input_file_uvem = 'PIDS_UVEM' !< Name of file which comprises static uv_exposure model input data
585	CHARACTER(LEN=100) :: input_file_vm = 'PIDS_VM' !< Name of file which comprises virtual measurement data
586
587	CHARACTER(LEN=25), ALLOCATABLE, DIMENSION(:) :: string_values !< output of string variables read from netcdf input files
588	CHARACTER(LEN=50), DIMENSION(:), ALLOCATABLE :: vars_pids !< variable in input file
589
590	INTEGER(iwp) :: id_emis !< NetCDF id of input file for chemistry emissions: TBD: It has to be removed
591
592	INTEGER(iwp) :: nc_stat !< return value of nf90 function call
593	INTEGER(iwp) :: num_var_pids !< number of variables in file
594	INTEGER(iwp) :: pids_id !< file id
595
596	LOGICAL :: input_pids_static = .FALSE. !< Flag indicating whether Palm-input-data-standard file containing static information exists
597	LOGICAL :: input_pids_dynamic = .FALSE. !< Flag indicating whether Palm-input-data-standard file containing dynamic information exists
598	LOGICAL :: input_pids_chem = .FALSE. !< Flag indicating whether Palm-input-data-standard file containing chemistry information exists
599	LOGICAL :: input_pids_uvem = .FALSE. !< Flag indicating whether uv-expoure-model input file containing static information exists
600	LOGICAL :: input_pids_vm = .FALSE. !< Flag indicating whether input file for virtual measurements exist
601
602	LOGICAL :: collective_read = .FALSE. !< Enable NetCDF collective read
603
604	TYPE(global_atts_type) :: input_file_atts !< global attributes of input file
605
606	SAVE
607
608	PRIVATE
609
610	INTERFACE netcdf_data_input_interpolate
611	MODULE PROCEDURE netcdf_data_input_interpolate_1d
612	MODULE PROCEDURE netcdf_data_input_interpolate_1d_soil
613	MODULE PROCEDURE netcdf_data_input_interpolate_2d
614	MODULE PROCEDURE netcdf_data_input_interpolate_3d
615	END INTERFACE netcdf_data_input_interpolate
616
617	INTERFACE netcdf_data_input_check_dynamic
618	MODULE PROCEDURE netcdf_data_input_check_dynamic
619	END INTERFACE netcdf_data_input_check_dynamic
620
621	INTERFACE netcdf_data_input_check_static
622	MODULE PROCEDURE netcdf_data_input_check_static
623	END INTERFACE netcdf_data_input_check_static
624
625	INTERFACE netcdf_data_input_chemistry_data
626	MODULE PROCEDURE netcdf_data_input_chemistry_data
627	END INTERFACE netcdf_data_input_chemistry_data
628
629	INTERFACE get_dimension_length
630	MODULE PROCEDURE get_dimension_length
631	END INTERFACE get_dimension_length
632
633	INTERFACE netcdf_data_input_inquire_file
634	MODULE PROCEDURE netcdf_data_input_inquire_file
635	END INTERFACE netcdf_data_input_inquire_file
636
637	INTERFACE netcdf_data_input_init
638	MODULE PROCEDURE netcdf_data_input_init
639	END INTERFACE netcdf_data_input_init
640
641	INTERFACE netcdf_data_input_att
642	MODULE PROCEDURE netcdf_data_input_att_int8
643	MODULE PROCEDURE netcdf_data_input_att_int32
644	MODULE PROCEDURE netcdf_data_input_att_real
645	MODULE PROCEDURE netcdf_data_input_att_string
646	END INTERFACE netcdf_data_input_att
647
648	INTERFACE netcdf_data_input_init_3d
649	MODULE PROCEDURE netcdf_data_input_init_3d
650	END INTERFACE netcdf_data_input_init_3d
651
652	INTERFACE netcdf_data_input_init_lsm
653	MODULE PROCEDURE netcdf_data_input_init_lsm
654	END INTERFACE netcdf_data_input_init_lsm
655
656	INTERFACE netcdf_data_input_surface_data
657	MODULE PROCEDURE netcdf_data_input_surface_data
658	END INTERFACE netcdf_data_input_surface_data
659
660	INTERFACE netcdf_data_input_var
661	MODULE PROCEDURE netcdf_data_input_var_char
662	MODULE PROCEDURE netcdf_data_input_var_real_1d
663	MODULE PROCEDURE netcdf_data_input_var_real_2d
664	END INTERFACE netcdf_data_input_var
665
666	INTERFACE netcdf_data_input_uvem
667	MODULE PROCEDURE netcdf_data_input_uvem
668	END INTERFACE netcdf_data_input_uvem
669
670	INTERFACE get_variable
671	MODULE PROCEDURE get_variable_1d_char
672	MODULE PROCEDURE get_variable_1d_int
673	MODULE PROCEDURE get_variable_1d_real
674	MODULE PROCEDURE get_variable_2d_int8
675	MODULE PROCEDURE get_variable_2d_int32
676	MODULE PROCEDURE get_variable_2d_real
677	MODULE PROCEDURE get_variable_3d_int8
678	MODULE PROCEDURE get_variable_3d_real
679	MODULE PROCEDURE get_variable_3d_real_dynamic
680	MODULE PROCEDURE get_variable_4d_to_3d_real
681	MODULE PROCEDURE get_variable_4d_real
682	MODULE PROCEDURE get_variable_5d_to_4d_real
683	MODULE PROCEDURE get_variable_5d_real ! (ecc) temp subroutine 4 reading 5D NC arrays
684	MODULE PROCEDURE get_variable_5d_real_dynamic ! 2B removed as z is out of emission_values
685	MODULE PROCEDURE get_variable_string
686	END INTERFACE get_variable
687
688	INTERFACE get_variable_pr
689	MODULE PROCEDURE get_variable_pr
690	END INTERFACE get_variable_pr
691
692	INTERFACE get_attribute
693	MODULE PROCEDURE get_attribute_real
694	MODULE PROCEDURE get_attribute_int8
695	MODULE PROCEDURE get_attribute_int32
696	MODULE PROCEDURE get_attribute_string
697	END INTERFACE get_attribute
698
699	!
700	!-- Public data structures
701	PUBLIC real_1d_3d, &
702	real_2d
703	!
704	!-- Public variables
705	PUBLIC albedo_pars_f, albedo_type_f, basal_area_density_f, buildings_f, &
706	building_id_f, building_pars_f, building_surface_pars_f, &
707	building_type_f, &
708	char_fill, &
709	char_lod, &
710	chem_emis, chem_emis_att, chem_emis_att_type, chem_emis_val_type, &
711	coord_ref_sys, &
712	init_3d, init_model, input_file_atts, &
713	input_file_dynamic, &
714	input_file_static, &
715	input_pids_static, &
716	input_pids_dynamic, input_pids_vm, input_file_vm, &
717	leaf_area_density_f, &
718	num_var_pids, &
719	pavement_pars_f, pavement_subsurface_pars_f, pavement_type_f, &
720	pids_id, &
721	root_area_density_lad_f, root_area_density_lsm_f, soil_pars_f, &
722	soil_type_f, street_crossing_f, street_type_f, surface_fraction_f, &
723	terrain_height_f, vegetation_pars_f, vegetation_type_f, &
724	vars_pids, &
725	water_pars_f, water_type_f
726	!
727	!-- Public uv exposure variables
728	PUBLIC building_obstruction_f, input_file_uvem, input_pids_uvem, &
729	netcdf_data_input_uvem, &
730	uvem_integration_f, uvem_irradiance_f, &
731	uvem_projarea_f, uvem_radiance_f
732
733	!
734	!-- Public subroutines
735	PUBLIC netcdf_data_input_check_dynamic, netcdf_data_input_check_static, &
736	netcdf_data_input_chemistry_data, &
737	get_dimension_length, &
738	netcdf_data_input_inquire_file, &
739	netcdf_data_input_init, netcdf_data_input_init_lsm, &
740	netcdf_data_input_init_3d, netcdf_data_input_att, &
741	netcdf_data_input_interpolate, &
742	netcdf_data_input_surface_data, netcdf_data_input_topo, &
743	netcdf_data_input_var, &
744	get_attribute, &
745	get_variable, &
746	get_variable_pr, &
747	open_read_file, &
748	check_existence, &
749	inquire_num_variables, &
750	inquire_variable_names, &
751	close_input_file
752
753
754	CONTAINS
755
756	!------------------------------------------------------------------------------!
757	! Description:
758	! ------------
759	!> Inquires whether NetCDF input files according to Palm-input-data standard
760	!> exist. Moreover, basic checks are performed.
761	!------------------------------------------------------------------------------!
762	SUBROUTINE netcdf_data_input_inquire_file
763
764	USE control_parameters, &
765	ONLY: topo_no_distinct
766
767	IMPLICIT NONE
768
769	#if defined ( __netcdf )
770	INQUIRE( FILE = TRIM( input_file_static ) // TRIM( coupling_char ), &
771	EXIST = input_pids_static )
772	INQUIRE( FILE = TRIM( input_file_dynamic ) // TRIM( coupling_char ), &
773	EXIST = input_pids_dynamic )
774	INQUIRE( FILE = TRIM( input_file_chem ) // TRIM( coupling_char ), &
775	EXIST = input_pids_chem )
776	INQUIRE( FILE = TRIM( input_file_uvem ) // TRIM( coupling_char ), &
777	EXIST = input_pids_uvem )
778	INQUIRE( FILE = TRIM( input_file_vm ) // TRIM( coupling_char ), &
779	EXIST = input_pids_vm )
780	#endif
781
782	!
783	!-- As long as topography can be input via ASCII format, no distinction
784	!-- between building and terrain can be made. This case, classify all
785	!-- surfaces as default type. Same in case land-surface and urban-surface
786	!-- model are not applied.
787	IF ( .NOT. input_pids_static ) THEN
788	topo_no_distinct = .TRUE.
789	ENDIF
790
791	END SUBROUTINE netcdf_data_input_inquire_file
792
793	!------------------------------------------------------------------------------!
794	! Description:
795	! ------------
796	!> Reads global attributes and coordinate reference system required for
797	!> initialization of the model.
798	!------------------------------------------------------------------------------!
799	SUBROUTINE netcdf_data_input_init
800
801	IMPLICIT NONE
802
803	INTEGER(iwp) :: id_mod !< NetCDF id of input file
804	INTEGER(iwp) :: var_id_crs !< NetCDF id of variable crs
805
806	IF ( .NOT. input_pids_static ) RETURN
807
808	#if defined ( __netcdf )
809	!
810	!-- Open file in read-only mode
811	CALL open_read_file( TRIM( input_file_static ) // &
812	TRIM( coupling_char ), id_mod )
813	!
814	!-- Read global attributes
815	CALL get_attribute( id_mod, input_file_atts%origin_lat_char, &
816	input_file_atts%origin_lat, .TRUE. )
817
818	CALL get_attribute( id_mod, input_file_atts%origin_lon_char, &
819	input_file_atts%origin_lon, .TRUE. )
820
821	CALL get_attribute( id_mod, input_file_atts%origin_time_char, &
822	input_file_atts%origin_time, .TRUE. )
823
824	CALL get_attribute( id_mod, input_file_atts%origin_x_char, &
825	input_file_atts%origin_x, .TRUE. )
826
827	CALL get_attribute( id_mod, input_file_atts%origin_y_char, &
828	input_file_atts%origin_y, .TRUE. )
829
830	CALL get_attribute( id_mod, input_file_atts%origin_z_char, &
831	input_file_atts%origin_z, .TRUE. )
832
833	CALL get_attribute( id_mod, input_file_atts%rotation_angle_char, &
834	input_file_atts%rotation_angle, .TRUE. )
835
836	CALL get_attribute( id_mod, input_file_atts%author_char, &
837	input_file_atts%author, .TRUE., no_abort=.FALSE. )
838	CALL get_attribute( id_mod, input_file_atts%contact_person_char, &
839	input_file_atts%contact_person, .TRUE., no_abort=.FALSE. )
840	CALL get_attribute( id_mod, input_file_atts%institution_char, &
841	input_file_atts%institution, .TRUE., no_abort=.FALSE. )
842	CALL get_attribute( id_mod, input_file_atts%acronym_char, &
843	input_file_atts%acronym, .TRUE., no_abort=.FALSE. )
844
845	CALL get_attribute( id_mod, input_file_atts%campaign_char, &
846	input_file_atts%campaign, .TRUE., no_abort=.FALSE. )
847	CALL get_attribute( id_mod, input_file_atts%location_char, &
848	input_file_atts%location, .TRUE., no_abort=.FALSE. )
849	CALL get_attribute( id_mod, input_file_atts%site_char, &
850	input_file_atts%site, .TRUE., no_abort=.FALSE. )
851
852	CALL get_attribute( id_mod, input_file_atts%source_char, &
853	input_file_atts%source, .TRUE., no_abort=.FALSE. )
854	CALL get_attribute( id_mod, input_file_atts%references_char, &
855	input_file_atts%references, .TRUE., no_abort=.FALSE. )
856	CALL get_attribute( id_mod, input_file_atts%keywords_char, &
857	input_file_atts%keywords, .TRUE., no_abort=.FALSE. )
858	CALL get_attribute( id_mod, input_file_atts%licence_char, &
859	input_file_atts%licence, .TRUE., no_abort=.FALSE. )
860	CALL get_attribute( id_mod, input_file_atts%comment_char, &
861	input_file_atts%comment, .TRUE., no_abort=.FALSE. )
862	!
863	!-- Read coordinate reference system if available
864	nc_stat = NF90_INQ_VARID( id_mod, 'crs', var_id_crs )
865	IF ( nc_stat == NF90_NOERR ) THEN
866	CALL get_attribute( id_mod, 'epsg_code', &
867	coord_ref_sys%epsg_code, &
868	.FALSE., 'crs' )
869	CALL get_attribute( id_mod, 'false_easting', &
870	coord_ref_sys%false_easting, &
871	.FALSE., 'crs' )
872	CALL get_attribute( id_mod, 'false_northing', &
873	coord_ref_sys%false_northing, &
874	.FALSE., 'crs' )
875	CALL get_attribute( id_mod, 'grid_mapping_name', &
876	coord_ref_sys%grid_mapping_name, &
877	.FALSE., 'crs' )
878	CALL get_attribute( id_mod, 'inverse_flattening', &
879	coord_ref_sys%inverse_flattening, &
880	.FALSE., 'crs' )
881	CALL get_attribute( id_mod, 'latitude_of_projection_origin', &
882	coord_ref_sys%latitude_of_projection_origin, &
883	.FALSE., 'crs' )
884	CALL get_attribute( id_mod, 'long_name', &
885	coord_ref_sys%long_name, &
886	.FALSE., 'crs' )
887	CALL get_attribute( id_mod, 'longitude_of_central_meridian', &
888	coord_ref_sys%longitude_of_central_meridian, &
889	.FALSE., 'crs' )
890	CALL get_attribute( id_mod, 'longitude_of_prime_meridian', &
891	coord_ref_sys%longitude_of_prime_meridian, &
892	.FALSE., 'crs' )
893	CALL get_attribute( id_mod, 'scale_factor_at_central_meridian', &
894	coord_ref_sys%scale_factor_at_central_meridian, &
895	.FALSE., 'crs' )
896	CALL get_attribute( id_mod, 'semi_major_axis', &
897	coord_ref_sys%semi_major_axis, &
898	.FALSE., 'crs' )
899	CALL get_attribute( id_mod, 'units', &
900	coord_ref_sys%units, &
901	.FALSE., 'crs' )
902	ELSE
903	!
904	!-- Calculate central meridian from origin_lon
905	coord_ref_sys%longitude_of_central_meridian = &
906	CEILING( input_file_atts%origin_lon / 6.0_wp ) * 6.0_wp - 3.0_wp
907	ENDIF
908	!
909	!-- Finally, close input file
910	CALL close_input_file( id_mod )
911	#endif
912	!
913	!-- Copy latitude, longitude, origin_z, rotation angle on init type
914	init_model%latitude = input_file_atts%origin_lat
915	init_model%longitude = input_file_atts%origin_lon
916	init_model%origin_time = input_file_atts%origin_time
917	init_model%origin_x = input_file_atts%origin_x
918	init_model%origin_y = input_file_atts%origin_y
919	init_model%origin_z = input_file_atts%origin_z
920	init_model%rotation_angle = input_file_atts%rotation_angle
921
922	!
923	!-- In case of nested runs, each model domain might have different longitude
924	!-- and latitude, which would result in different Coriolis parameters and
925	!-- sun-zenith angles. To avoid this, longitude and latitude in each model
926	!-- domain will be set to the values of the root model. Please note, this
927	!-- synchronization is required already here.
928	#if defined( __parallel )
929	CALL MPI_BCAST( init_model%latitude, 1, MPI_REAL, 0, &
930	MPI_COMM_WORLD, ierr )
931	CALL MPI_BCAST( init_model%longitude, 1, MPI_REAL, 0, &
932	MPI_COMM_WORLD, ierr )
933	#endif
934
935	END SUBROUTINE netcdf_data_input_init
936
937	!------------------------------------------------------------------------------!
938	! Description:
939	! ------------
940	!> Read an array of characters.
941	!------------------------------------------------------------------------------!
942	SUBROUTINE netcdf_data_input_var_char( val, search_string, id_mod )
943
944	IMPLICIT NONE
945
946	CHARACTER(LEN=*) :: search_string !< name of the variable
947	CHARACTER(LEN=*), DIMENSION(:) :: val !< variable which should be read
948
949	INTEGER(iwp) :: id_mod !< NetCDF id of input file
950
951	#if defined ( __netcdf )
952	!
953	!-- Read variable
954	CALL get_variable( id_mod, search_string, val )
955	#endif
956
957	END SUBROUTINE netcdf_data_input_var_char
958
959	!------------------------------------------------------------------------------!
960	! Description:
961	! ------------
962	!> Read an 1D array of REAL values.
963	!------------------------------------------------------------------------------!
964	SUBROUTINE netcdf_data_input_var_real_1d( val, search_string, id_mod )
965
966	IMPLICIT NONE
967
968	CHARACTER(LEN=*) :: search_string !< name of the variable
969
970	INTEGER(iwp) :: id_mod !< NetCDF id of input file
971
972	REAL(wp), DIMENSION(:) :: val !< variable which should be read
973
974	#if defined ( __netcdf )
975	!
976	!-- Read variable
977	CALL get_variable( id_mod, search_string, val )
978	#endif
979
980	END SUBROUTINE netcdf_data_input_var_real_1d
981
982	!------------------------------------------------------------------------------!
983	! Description:
984	! ------------
985	!> Read an 1D array of REAL values.
986	!------------------------------------------------------------------------------!
987	SUBROUTINE netcdf_data_input_var_real_2d( val, search_string, &
988	id_mod, d1s, d1e, d2s, d2e )
989
990	IMPLICIT NONE
991
992	CHARACTER(LEN=*) :: search_string !< name of the variable
993
994	INTEGER(iwp) :: id_mod !< NetCDF id of input file
995	INTEGER(iwp) :: d1e !< end index of first dimension to be read
996	INTEGER(iwp) :: d2e !< end index of second dimension to be read
997	INTEGER(iwp) :: d1s !< start index of first dimension to be read
998	INTEGER(iwp) :: d2s !< start index of second dimension to be read
999
1000	REAL(wp), DIMENSION(:,:) :: val !< variable which should be read
1001
1002	#if defined ( __netcdf )
1003	!
1004	!-- Read character variable
1005	CALL get_variable( id_mod, search_string, val, d1s, d1e, d2s, d2e )
1006	#endif
1007
1008	END SUBROUTINE netcdf_data_input_var_real_2d
1009
1010	!------------------------------------------------------------------------------!
1011	! Description:
1012	! ------------
1013	!> Read a global string attribute
1014	!------------------------------------------------------------------------------!
1015	SUBROUTINE netcdf_data_input_att_string( val, search_string, id_mod, &
1016	input_file, global, openclose, &
1017	variable_name )
1018
1019	IMPLICIT NONE
1020
1021	CHARACTER(LEN=*) :: search_string !< name of the attribue
1022	CHARACTER(LEN=*) :: val !< attribute
1023
1024	CHARACTER(LEN=*) :: input_file !< name of input file
1025	CHARACTER(LEN=*) :: openclose !< string indicating whether NetCDF needs to be opend or closed
1026	CHARACTER(LEN=*) :: variable_name !< string indicating whether NetCDF needs to be opend or closed
1027
1028	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1029
1030	LOGICAL :: global !< flag indicating a global or a variable's attribute
1031
1032	#if defined ( __netcdf )
1033	!
1034	!-- Open file in read-only mode if necessary
1035	IF ( openclose == 'open' ) THEN
1036	CALL open_read_file( TRIM( input_file ) // TRIM( coupling_char ), &
1037	id_mod )
1038	ENDIF
1039	!
1040	!-- Read global attribute
1041	IF ( global ) THEN
1042	CALL get_attribute( id_mod, search_string, val, global )
1043	!
1044	!-- Read variable attribute
1045	ELSE
1046	CALL get_attribute( id_mod, search_string, val, global, variable_name )
1047	ENDIF
1048	!
1049	!-- Close input file
1050	IF ( openclose == 'close' ) CALL close_input_file( id_mod )
1051	#endif
1052
1053	END SUBROUTINE netcdf_data_input_att_string
1054
1055	!------------------------------------------------------------------------------!
1056	! Description:
1057	! ------------
1058	!> Read a global 8-bit integer attribute
1059	!------------------------------------------------------------------------------!
1060	SUBROUTINE netcdf_data_input_att_int8( val, search_string, id_mod, &
1061	input_file, global, openclose, &
1062	variable_name )
1063
1064	IMPLICIT NONE
1065
1066	CHARACTER(LEN=*) :: search_string !< name of the attribue
1067
1068	CHARACTER(LEN=*) :: input_file !< name of input file
1069	CHARACTER(LEN=*) :: openclose !< string indicating whether NetCDF needs to be opend or closed
1070	CHARACTER(LEN=*) :: variable_name !< string indicating whether NetCDF needs to be opend or closed
1071
1072	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1073	INTEGER(KIND=1) :: val !< value of the attribute
1074
1075	LOGICAL :: global !< flag indicating a global or a variable's attribute
1076
1077	#if defined ( __netcdf )
1078	!
1079	!-- Open file in read-only mode
1080	IF ( openclose == 'open' ) THEN
1081	CALL open_read_file( TRIM( input_file ) // TRIM( coupling_char ), &
1082	id_mod )
1083	ENDIF
1084	!
1085	!-- Read global attribute
1086	IF ( global ) THEN
1087	CALL get_attribute( id_mod, search_string, val, global )
1088	!
1089	!-- Read variable attribute
1090	ELSE
1091	CALL get_attribute( id_mod, search_string, val, global, variable_name )
1092	ENDIF
1093	!
1094	!-- Finally, close input file
1095	IF ( openclose == 'close' ) CALL close_input_file( id_mod )
1096	#endif
1097
1098	END SUBROUTINE netcdf_data_input_att_int8
1099
1100	!------------------------------------------------------------------------------!
1101	! Description:
1102	! ------------
1103	!> Read a global 32-bit integer attribute
1104	!------------------------------------------------------------------------------!
1105	SUBROUTINE netcdf_data_input_att_int32( val, search_string, id_mod, &
1106	input_file, global, openclose, &
1107	variable_name )
1108
1109	IMPLICIT NONE
1110
1111	CHARACTER(LEN=*) :: search_string !< name of the attribue
1112
1113	CHARACTER(LEN=*) :: input_file !< name of input file
1114	CHARACTER(LEN=*) :: openclose !< string indicating whether NetCDF needs to be opend or closed
1115	CHARACTER(LEN=*) :: variable_name !< string indicating whether NetCDF needs to be opend or closed
1116
1117	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1118	INTEGER(iwp) :: val !< value of the attribute
1119
1120	LOGICAL :: global !< flag indicating a global or a variable's attribute
1121
1122	#if defined ( __netcdf )
1123	!
1124	!-- Open file in read-only mode
1125	IF ( openclose == 'open' ) THEN
1126	CALL open_read_file( TRIM( input_file ) // TRIM( coupling_char ), &
1127	id_mod )
1128	ENDIF
1129	!
1130	!-- Read global attribute
1131	IF ( global ) THEN
1132	CALL get_attribute( id_mod, search_string, val, global )
1133	!
1134	!-- Read variable attribute
1135	ELSE
1136	CALL get_attribute( id_mod, search_string, val, global, variable_name )
1137	ENDIF
1138	!
1139	!-- Finally, close input file
1140	IF ( openclose == 'close' ) CALL close_input_file( id_mod )
1141	#endif
1142
1143	END SUBROUTINE netcdf_data_input_att_int32
1144
1145	!------------------------------------------------------------------------------!
1146	! Description:
1147	! ------------
1148	!> Read a global real attribute
1149	!------------------------------------------------------------------------------!
1150	SUBROUTINE netcdf_data_input_att_real( val, search_string, id_mod, &
1151	input_file, global, openclose, &
1152	variable_name )
1153
1154	IMPLICIT NONE
1155
1156	CHARACTER(LEN=*) :: search_string !< name of the attribue
1157
1158	CHARACTER(LEN=*) :: input_file !< name of input file
1159	CHARACTER(LEN=*) :: openclose !< string indicating whether NetCDF needs to be opend or closed
1160	CHARACTER(LEN=*) :: variable_name !< string indicating whether NetCDF needs to be opend or closed
1161
1162	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1163
1164	LOGICAL :: global !< flag indicating a global or a variable's attribute
1165
1166	REAL(wp) :: val !< value of the attribute
1167
1168	#if defined ( __netcdf )
1169	!
1170	!-- Open file in read-only mode
1171	IF ( openclose == 'open' ) THEN
1172	CALL open_read_file( TRIM( input_file ) // TRIM( coupling_char ), &
1173	id_mod )
1174	ENDIF
1175	!
1176	!-- Read global attribute
1177	IF ( global ) THEN
1178	CALL get_attribute( id_mod, search_string, val, global )
1179	!
1180	!-- Read variable attribute
1181	ELSE
1182	CALL get_attribute( id_mod, search_string, val, global, variable_name )
1183	ENDIF
1184	!
1185	!-- Finally, close input file
1186	IF ( openclose == 'close' ) CALL close_input_file( id_mod )
1187	#endif
1188
1189	END SUBROUTINE netcdf_data_input_att_real
1190
1191	!------------------------------------------------------------------------------!
1192	! Description:
1193	! ------------
1194	!> Reads Chemistry NETCDF Input data, such as emission values, emission species, etc.
1195	!------------------------------------------------------------------------------!
1196
1197	SUBROUTINE netcdf_data_input_chemistry_data(emt_att,emt)
1198
1199	USE chem_modules, &
1200	ONLY: emiss_lod, time_fac_type, surface_csflux_name
1201
1202	USE control_parameters, &
1203	ONLY: message_string
1204
1205	USE indices, &
1206	ONLY: nxl, nxr, nys, nyn
1207
1208	IMPLICIT NONE
1209
1210	TYPE(chem_emis_att_type), INTENT(INOUT) :: emt_att
1211	TYPE(chem_emis_val_type), ALLOCATABLE, DIMENSION(:), INTENT(INOUT) :: emt
1212
1213	INTEGER(iwp) :: i, j, k !< generic counters
1214	INTEGER(iwp) :: ispec !< index for number of emission species in input
1215	INTEGER(iwp) :: len_dims !< Length of dimension
1216	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
1217
1218	!
1219	!-- dum_var_4d are designed to read in emission_values from the chemistry netCDF file.
1220	!-- Currently the vestigial "z" dimension in emission_values makes it a 5D array,
1221	!-- hence the corresponding dum_var_5d array. When the "z" dimension is removed
1222	!-- completely, dum_var_4d will be used instead
1223	!-- (ecc 20190425)
1224
1225	! REAL(wp), ALLOCATABLE, DIMENSION(:,:,:,:) :: dum_var_4d !< temp array 4 4D chem emission data
1226	REAL(wp), ALLOCATABLE, DIMENSION(:,:,:,:,:) :: dum_var_5d !< temp array 4 5D chem emission data
1227
1228	!
1229	!-- Start processing data
1230	!
1231	!-- Emission LOD 0 (Parameterized mode)
1232
1233	IF ( emiss_lod == 0 ) THEN
1234
1235	! for reference (ecc)
1236	! IF (TRIM(mode_emis) == "PARAMETERIZED" .OR. TRIM(mode_emis) == "parameterized") THEN
1237
1238	ispec=1
1239	emt_att%n_emiss_species = 0
1240
1241	!
1242	!-- number of species
1243
1244	DO WHILE (TRIM( surface_csflux_name( ispec ) ) /= 'novalue' )
1245
1246	emt_att%n_emiss_species = emt_att%n_emiss_species + 1
1247	ispec=ispec+1
1248	!
1249	!-- followling line retained for compatibility with salsa_mod
1250	!-- which still uses emt_att%nspec heavily (ecc)
1251
1252	emt_att%nspec = emt_att%nspec + 1
1253
1254	ENDDO
1255
1256	!
1257	!-- allocate emission values data type arrays
1258
1259	ALLOCATE ( emt(emt_att%n_emiss_species) )
1260
1261	!
1262	!-- Read EMISSION SPECIES NAMES
1263
1264	!
1265	!-- allocate space for strings
1266
1267	ALLOCATE (emt_att%species_name(emt_att%n_emiss_species) )
1268
1269	DO ispec = 1, emt_att%n_emiss_species
1270	emt_att%species_name(ispec) = TRIM(surface_csflux_name(ispec))
1271	ENDDO
1272
1273	!
1274	!-- LOD 1 (default mode) and LOD 2 (pre-processed mode)
1275
1276	ELSE
1277
1278	#if defined ( __netcdf )
1279
1280	IF ( .NOT. input_pids_chem ) RETURN
1281
1282	!
1283	!-- first we allocate memory space for the emission species and then
1284	!-- we differentiate between LOD 1 (default mode) and LOD 2 (pre-processed mode)
1285
1286	!
1287	!-- open emission data file ( {palmcase}_chemistry )
1288
1289	CALL open_read_file ( TRIM(input_file_chem) // TRIM(coupling_char), id_emis )
1290
1291	!
1292	!-- inquire number of variables
1293
1294	CALL inquire_num_variables ( id_emis, num_vars )
1295
1296	!
1297	!-- Get General Dimension Lengths: only # species and # categories.
1298	!-- Tther dimensions depend on the emission mode or specific components
1299
1300	CALL get_dimension_length ( id_emis, emt_att%n_emiss_species, 'nspecies' )
1301
1302	!
1303	!-- backward compatibility for salsa_mod (ecc)
1304
1305	emt_att%nspec = emt_att%n_emiss_species
1306
1307	!
1308	!-- Allocate emission values data type arrays
1309
1310	ALLOCATE ( emt(emt_att%n_emiss_species) )
1311
1312	!
1313	!-- READING IN SPECIES NAMES
1314
1315	!
1316	!-- Allocate memory for species names
1317
1318	ALLOCATE ( emt_att%species_name(emt_att%n_emiss_species) )
1319
1320	!
1321	!-- Retrieve variable name (again, should use n_emiss_strlen)
1322
1323	CALL get_variable( id_emis, 'emission_name', &
1324	string_values, emt_att%n_emiss_species )
1325	emt_att%species_name=string_values
1326
1327	!
1328	!-- dealocate string_values previously allocated in get_variable call
1329
1330	IF ( ALLOCATED(string_values) ) DEALLOCATE (string_values)
1331
1332	!
1333	!-- READING IN SPECIES INDICES
1334
1335	!
1336	!-- Allocate memory for species indices
1337
1338	ALLOCATE ( emt_att%species_index(emt_att%n_emiss_species) )
1339
1340	!
1341	!-- Retrieve variable data
1342
1343	CALL get_variable( id_emis, 'emission_index', emt_att%species_index )
1344	!
1345	!-- Now the routine has to distinguish between chemistry emission
1346	!-- LOD 1 (DEFAULT mode) and LOD 2 (PRE-PROCESSED mode)
1347
1348	!
1349	!-- START OF EMISSION LOD 1 (DEFAULT MODE)
1350
1351
1352	IF ( emiss_lod == 1 ) THEN
1353
1354	! for reference (ecc)
1355	! IF (TRIM(mode_emis) == "DEFAULT" .OR. TRIM(mode_emis) == "default") THEN
1356
1357	!
1358	!-- get number of emission categories
1359
1360	CALL get_dimension_length ( id_emis, emt_att%ncat, 'ncat' )
1361
1362	!-- READING IN EMISSION CATEGORIES INDICES
1363
1364	ALLOCATE ( emt_att%cat_index(emt_att%ncat) )
1365
1366	!
1367	!-- Retrieve variable data
1368
1369	CALL get_variable( id_emis, 'emission_cat_index', emt_att%cat_index )
1370
1371
1372	!
1373	!-- Loop through individual species to get basic information on
1374	!-- VOC/PM/NOX/SOX
1375
1376	!------------------------------------------------------------------------------
1377	!-- NOTE - CHECK ARRAY INDICES FOR READING IN NAMES AND SPECIES
1378	!-- IN LOD1 (DEFAULT MODE) FOR THE VARIOUS MODE SPLITS
1379	!-- AS ALL ID_EMIS CONDITIONALS HAVE BEEN REMOVED FROM GET_VAR
1380	!-- FUNCTIONS. IN THEORY THIS WOULD MEAN ALL ARRAYS SHOULD BE
1381	!-- READ FROM 0 to N-1 (C CONVENTION) AS OPPOSED TO 1 to N
1382	!-- (FORTRAN CONVENTION). KEEP THIS IN MIND !!
1383	!-- (ecc 20190424)
1384	!------------------------------------------------------------------------------
1385
1386	DO ispec = 1, emt_att%n_emiss_species
1387
1388	!
1389	!-- VOC DATA (name and composition)
1390
1391	IF ( TRIM(emt_att%species_name(ispec)) == "VOC" .OR. &
1392	TRIM(emt_att%species_name(ispec)) == "voc" ) THEN
1393
1394	!
1395	!-- VOC name
1396	CALL get_dimension_length ( id_emis, emt_att%nvoc, 'nvoc' )
1397	ALLOCATE ( emt_att%voc_name(emt_att%nvoc) )
1398	CALL get_variable ( id_emis,"emission_voc_name", &
1399	string_values, emt_att%nvoc )
1400	emt_att%voc_name = string_values
1401	IF ( ALLOCATED(string_values) ) DEALLOCATE (string_values)
1402
1403	!
1404	!-- VOC composition
1405
1406	ALLOCATE ( emt_att%voc_comp(emt_att%ncat,emt_att%nvoc) )
1407	CALL get_variable ( id_emis, "composition_voc", emt_att%voc_comp, &
1408	1, emt_att%ncat, 1, emt_att%nvoc )
1409
1410	ENDIF ! VOC
1411
1412	!
1413	!-- PM DATA (name and composition)
1414
1415	IF ( TRIM(emt_att%species_name(ispec)) == "PM" .OR. &
1416	TRIM(emt_att%species_name(ispec)) == "pm") THEN
1417
1418	!
1419	!-- PM name
1420
1421	CALL get_dimension_length ( id_emis, emt_att%npm, 'npm' )
1422	ALLOCATE ( emt_att%pm_name(emt_att%npm) )
1423	CALL get_variable ( id_emis, "pm_name", string_values, emt_att%npm )
1424	emt_att%pm_name = string_values
1425	IF ( ALLOCATED(string_values) ) DEALLOCATE (string_values)
1426
1427	!
1428	!-- PM composition (PM1, PM2.5 and PM10)
1429
1430	len_dims = 3 ! PM1, PM2.5, PM10
1431	ALLOCATE(emt_att%pm_comp(emt_att%ncat,emt_att%npm,len_dims))
1432	CALL get_variable ( id_emis, "composition_pm", emt_att%pm_comp, &
1433	1, emt_att%ncat, 1, emt_att%npm, 1, len_dims )
1434
1435	ENDIF ! PM
1436
1437	!
1438	!-- NOX (NO and NO2)
1439
1440	IF ( TRIM(emt_att%species_name(ispec)) == "NOX" .OR. &
1441	TRIM(emt_att%species_name(ispec)) == "nox" ) THEN
1442
1443	ALLOCATE ( emt_att%nox_comp(emt_att%ncat,emt_att%nnox) )
1444	CALL get_variable ( id_emis, "composition_nox", emt_att%nox_comp, &
1445	1, emt_att%ncat, 1, emt_att%nnox )
1446
1447	ENDIF ! NOX
1448
1449	!
1450	!-- SOX (SO2 and SO4)
1451
1452	IF ( TRIM(emt_att%species_name(ispec)) == "SOX" .OR. &
1453	TRIM(emt_att%species_name(ispec)) == "sox" ) THEN
1454
1455	ALLOCATE ( emt_att%sox_comp(emt_att%ncat,emt_att%nsox) )
1456	CALL get_variable ( id_emis, "composition_sox", emt_att%sox_comp, &
1457	1, emt_att%ncat, 1, emt_att%nsox )
1458
1459	ENDIF ! SOX
1460
1461	ENDDO ! do ispec
1462
1463	!
1464	!-- EMISSION TIME SCALING FACTORS (hourly and MDH data)
1465
1466	!
1467	!-- HOUR
1468	IF ( TRIM(time_fac_type) == "HOUR" .OR. &
1469	TRIM(time_fac_type) == "hour" ) THEN
1470
1471	CALL get_dimension_length ( id_emis, emt_att%nhoursyear, 'nhoursyear' )
1472	ALLOCATE ( emt_att%hourly_emis_time_factor(emt_att%ncat,emt_att%nhoursyear) )
1473	CALL get_variable ( id_emis, "emission_time_factors", &
1474	emt_att%hourly_emis_time_factor, &
1475	1, emt_att%ncat, 1, emt_att%nhoursyear )
1476
1477	!
1478	!-- MDH
1479
1480	ELSE IF ( TRIM(time_fac_type) == "MDH" .OR. &
1481	TRIM(time_fac_type) == "mdh" ) THEN
1482
1483	CALL get_dimension_length ( id_emis, emt_att%nmonthdayhour, 'nmonthdayhour' )
1484	ALLOCATE ( emt_att%mdh_emis_time_factor(emt_att%ncat,emt_att%nmonthdayhour) )
1485	CALL get_variable ( id_emis, "emission_time_factors", &
1486	emt_att%mdh_emis_time_factor, &
1487	1, emt_att%ncat, 1, emt_att%nmonthdayhour )
1488
1489	!
1490	!-- ERROR (time factor undefined)
1491
1492	ELSE
1493
1494	message_string = 'We are in the DEFAULT chemistry emissions mode: ' // &
1495	' !no time-factor type specified!' // &
1496	'Please specify the value of time_fac_type:' // &
1497	' either "MDH" or "HOUR"'
1498	CALL message( 'netcdf_data_input_chemistry_data', 'CM0200', 2, 2, 0, 6, 0 )
1499
1500
1501	ENDIF ! time_fac_type
1502
1503	!
1504	!-- read in default (LOD1) emissions from chemisty netCDF file per species
1505
1506	!
1507	!-- NOTE - at the moment the data is read in per species, but in the future it would
1508	!-- be much more sensible to read in per species per time step to reduce
1509	!-- memory consumption and, to a lesser degree, dimensionality of data exchange
1510	!-- (I expect this will be necessary when the problem size is large)
1511
1512	DO ispec = 1, emt_att%n_emiss_species
1513
1514	!
1515	!-- allocate space for species specific emission values
1516	!-- NOTE - this array is extended by 1 cell in each horizontal direction
1517	!-- to compensate for an apparent linear offset. The reason of this
1518	!-- offset is not known but it has been determined to take place beyond the
1519	!-- scope of this module, and has little to do with index conventions.
1520	!-- That is, setting the array horizontal limit from nx0:nx1 to 1:(nx1-nx0+1)
1521	!-- or nx0+1:nx1+1 did not result in correct or definite behavior
1522	!-- This must be looked at at some point by the Hannover team but for now
1523	!-- this workaround is deemed reasonable (ecc 20190417)
1524
1525	IF ( .NOT. ALLOCATED ( emt(ispec)%default_emission_data ) ) THEN
1526	ALLOCATE ( emt(ispec)%default_emission_data(emt_att%ncat,nys:nyn+1,nxl:nxr+1) )
1527	ENDIF
1528	!
1529	!-- allocate dummy variable w/ index order identical to that shown in the netCDF header
1530
1531	ALLOCATE ( dum_var_5d(1,nys:nyn,nxl:nxr,1,emt_att%ncat) )
1532	!
1533	!-- get variable. be very careful
1534	!-- I am using get_variable_5d_real_dynamic (note logical argument at the end)
1535	!-- 1) use Fortran index convention (i.e., 1 to N)
1536	!-- 2) index order must be in reverse order from above allocation order
1537
1538	CALL get_variable ( id_emis, "emission_values", dum_var_5d, &
1539	1, ispec, nxl+1, nys+1, 1, &
1540	emt_att%ncat, 1, nxr-nxl+1, nyn-nys+1, emt_att%dt_emission, &
1541	.FALSE. )
1542	!
1543	!-- assign temp array to data structure then deallocate temp array
1544	!-- NOTE - indices are shifted from nx0:nx1 to nx0+1:nx1+1 to offset
1545	!-- the emission data array to counter said domain offset
1546	!-- (ecc 20190417)
1547
1548	DO k = 1, emt_att%ncat
1549	DO j = nys+1, nyn+1
1550	DO i = nxl+1, nxr+1
1551	emt(ispec)%default_emission_data(k,j,i) = dum_var_5d(1,j-1,i-1,1,k)
1552	ENDDO
1553	ENDDO
1554	ENDDO
1555
1556	DEALLOCATE ( dum_var_5d )
1557
1558	ENDDO ! ispec
1559	!
1560	!-- UNITS
1561
1562	CALL get_attribute(id_emis,"units",emt_att%units,.FALSE.,"emission_values")
1563
1564	!
1565	!-- END DEFAULT MODE
1566
1567
1568	!
1569	!-- START LOD 2 (PRE-PROCESSED MODE)
1570
1571	ELSE IF ( emiss_lod == 2 ) THEN
1572
1573	! for reference (ecc)
1574	! ELSE IF (TRIM(mode_emis) == "PRE-PROCESSED" .OR. TRIM(mode_emis) == "pre-processed") THEN
1575
1576	!
1577	!-- For LOD 2 only VOC and emission data need be read
1578
1579	!------------------------------------------------------------------------------
1580	!-- NOTE - CHECK ARRAY INDICES FOR READING IN NAMES AND SPECIES
1581	!-- IN LOD2 (PRE-PROCESSED MODE) FOR THE VARIOUS MODE SPLITS
1582	!-- AS ALL ID_EMIS CONDITIONALS HAVE BEEN REMOVED FROM GET_VAR
1583	!-- FUNCTIONS. IN THEORY THIS WOULD MEAN ALL ARRAYS SHOULD BE
1584	!-- READ FROM 0 to N-1 (C CONVENTION) AS OPPOSED TO 1 to N
1585	!-- (FORTRAN CONVENTION). KEEP THIS IN MIND !!
1586	!-- (ecc 20190424)
1587	!------------------------------------------------------------------------------
1588
1589	DO ispec = 1, emt_att%n_emiss_species
1590
1591	!
1592	!-- VOC DATA (name and composition)
1593
1594	IF ( TRIM(emt_att%species_name(ispec)) == "VOC" .OR. &
1595	TRIM(emt_att%species_name(ispec)) == "voc" ) THEN
1596
1597	!
1598	!-- VOC name
1599	CALL get_dimension_length ( id_emis, emt_att%nvoc, 'nvoc' )
1600	ALLOCATE ( emt_att%voc_name(emt_att%nvoc) )
1601	CALL get_variable ( id_emis, "emission_voc_name", &
1602	string_values, emt_att%nvoc)
1603	emt_att%voc_name = string_values
1604	IF ( ALLOCATED(string_values) ) DEALLOCATE (string_values)
1605
1606	!
1607	!-- VOC composition
1608
1609	ALLOCATE ( emt_att%voc_comp(emt_att%ncat,emt_att%nvoc) )
1610	CALL get_variable ( id_emis, "composition_voc", emt_att%voc_comp, &
1611	1, emt_att%ncat, 1, emt_att%nvoc )
1612	ENDIF ! VOC
1613
1614	ENDDO ! ispec
1615
1616	!
1617	!-- EMISSION DATA
1618
1619	CALL get_dimension_length ( id_emis, emt_att%dt_emission, 'time' )
1620
1621	!
1622	!-- read in pre-processed (LOD2) emissions from chemisty netCDF file per species
1623
1624	!
1625	!-- NOTE - at the moment the data is read in per species, but in the future it would
1626	!-- be much more sensible to read in per species per time step to reduce
1627	!-- memory consumption and, to a lesser degree, dimensionality of data exchange
1628	!-- (I expect this will be necessary when the problem size is large)
1629
1630	DO ispec = 1, emt_att%n_emiss_species
1631
1632	!
1633	!-- allocate space for species specific emission values
1634	!-- NOTE - this array is extended by 1 cell in each horizontal direction
1635	!-- to compensate for an apparent linear offset. The reason of this
1636	!-- offset is not known but it has been determined to take place beyond the
1637	!-- scope of this module, and has little to do with index conventions.
1638	!-- That is, setting the array horizontal limit from nx0:nx1 to 1:(nx1-nx0+1)
1639	!-- or nx0+1:nx1+1 did not result in correct or definite behavior
1640	!-- This must be looked at at some point by the Hannover team but for now
1641	!-- this workaround is deemed reasonable (ecc 20190417)
1642
1643	IF ( .NOT. ALLOCATED( emt(ispec)%preproc_emission_data ) ) THEN
1644	ALLOCATE( emt(ispec)%preproc_emission_data( &
1645	emt_att%dt_emission, 1, nys:nyn+1, nxl:nxr+1) )
1646	ENDIF
1647	!
1648	!-- allocate dummy variable w/ index order identical to that shown in the netCDF header
1649
1650	ALLOCATE ( dum_var_5d(emt_att%dt_emission,1,nys:nyn,nxl:nxr,1) )
1651	!
1652	!-- get variable. be very careful
1653	!-- I am using get_variable_5d_real_dynamic (note logical argument at the end)
1654	!-- 1) use Fortran index convention (i.e., 1 to N)
1655	!-- 2) index order must be in reverse order from above allocation order
1656
1657	CALL get_variable ( id_emis, "emission_values", dum_var_5d, &
1658	ispec, nxl+1, nys+1, 1, 1, &
1659	1, nxr-nxl+1, nyn-nys+1, 1, emt_att%dt_emission, &
1660	.FALSE. )
1661	!
1662	!-- assign temp array to data structure then deallocate temp array
1663	!-- NOTE - indices are shifted from nx0:nx1 to nx0+1:nx1+1 to offset
1664	!-- the emission data array to counter said unkonwn offset
1665	!-- (ecc 20190417)
1666
1667	DO k = 1, emt_att%dt_emission
1668	DO j = nys+1, nyn+1
1669	DO i = nxl+1, nxr+1
1670	emt(ispec)%preproc_emission_data(k,1,j,i) = dum_var_5d(k,1,j-1,i-1,1)
1671	ENDDO
1672	ENDDO
1673	ENDDO
1674
1675	DEALLOCATE ( dum_var_5d )
1676
1677	ENDDO ! ispec
1678	!
1679	!-- UNITS
1680
1681	CALL get_attribute ( id_emis, "units", emt_att%units, .FALSE. , "emission_values" )
1682
1683	ENDIF ! LOD1 & LOD2 (default and pre-processed mode)
1684
1685	CALL close_input_file (id_emis)
1686
1687	#endif
1688
1689	ENDIF ! LOD0 (parameterized mode)
1690
1691	END SUBROUTINE netcdf_data_input_chemistry_data
1692
1693
1694	!------------------------------------------------------------------------------!
1695	! Description:
1696	! ------------
1697	!> Reads surface classification data, such as vegetation and soil type, etc. .
1698	!------------------------------------------------------------------------------!
1699	SUBROUTINE netcdf_data_input_surface_data
1700
1701	USE control_parameters, &
1702	ONLY: land_surface, plant_canopy, urban_surface
1703
1704	USE indices, &
1705	ONLY: nbgp, nxl, nxr, nyn, nys
1706
1707
1708	IMPLICIT NONE
1709
1710	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names !< variable names in static input file
1711
1712	INTEGER(iwp) :: id_surf !< NetCDF id of input file
1713	INTEGER(iwp) :: k !< running index along z-direction
1714	INTEGER(iwp) :: k2 !< running index
1715	INTEGER(iwp) :: num_vars !< number of variables in input file
1716	INTEGER(iwp) :: nz_soil !< number of soil layers in file
1717
1718	!
1719	!-- If not static input file is available, skip this routine
1720	IF ( .NOT. input_pids_static ) RETURN
1721	!
1722	!-- Measure CPU time
1723	CALL cpu_log( log_point_s(82), 'NetCDF input', 'start' )
1724	!
1725	!-- Read plant canopy variables.
1726	IF ( plant_canopy ) THEN
1727	#if defined ( __netcdf )
1728	!
1729	!-- Open file in read-only mode
1730	CALL open_read_file( TRIM( input_file_static ) // &
1731	TRIM( coupling_char ) , id_surf )
1732	!
1733	!-- At first, inquire all variable names.
1734	!-- This will be used to check whether an optional input variable
1735	!-- exist or not.
1736	CALL inquire_num_variables( id_surf, num_vars )
1737
1738	ALLOCATE( var_names(1:num_vars) )
1739	CALL inquire_variable_names( id_surf, var_names )
1740
1741	!
1742	!-- Read leaf area density - resolved vegetation
1743	IF ( check_existence( var_names, 'lad' ) ) THEN
1744	leaf_area_density_f%from_file = .TRUE.
1745	CALL get_attribute( id_surf, char_fill, &
1746	leaf_area_density_f%fill, &
1747	.FALSE., 'lad' )
1748	!
1749	!-- Inquire number of vertical vegetation layer
1750	CALL get_dimension_length( id_surf, &
1751	leaf_area_density_f%nz, &
1752	'zlad' )
1753	!
1754	!-- Allocate variable for leaf-area density
1755	ALLOCATE( leaf_area_density_f%var( 0:leaf_area_density_f%nz-1, &
1756	nys:nyn,nxl:nxr) )
1757
1758	CALL get_variable( id_surf, 'lad', leaf_area_density_f%var, &
1759	nxl, nxr, nys, nyn, &
1760	0, leaf_area_density_f%nz-1 )
1761
1762	ELSE
1763	leaf_area_density_f%from_file = .FALSE.
1764	ENDIF
1765
1766	!
1767	!-- Read basal area density - resolved vegetation
1768	IF ( check_existence( var_names, 'bad' ) ) THEN
1769	basal_area_density_f%from_file = .TRUE.
1770	CALL get_attribute( id_surf, char_fill, &
1771	basal_area_density_f%fill, &
1772	.FALSE., 'bad' )
1773	!
1774	!-- Inquire number of vertical vegetation layer
1775	CALL get_dimension_length( id_surf, &
1776	basal_area_density_f%nz, &
1777	'zlad' )
1778	!
1779	!-- Allocate variable
1780	ALLOCATE( basal_area_density_f%var(0:basal_area_density_f%nz-1, &
1781	nys:nyn,nxl:nxr) )
1782
1783	CALL get_variable( id_surf, 'bad', basal_area_density_f%var, &
1784	nxl, nxr, nys, nyn, &
1785	0, basal_area_density_f%nz-1 )
1786	ELSE
1787	basal_area_density_f%from_file = .FALSE.
1788	ENDIF
1789
1790	!
1791	!-- Read root area density - resolved vegetation
1792	IF ( check_existence( var_names, 'root_area_dens_r' ) ) THEN
1793	root_area_density_lad_f%from_file = .TRUE.
1794	CALL get_attribute( id_surf, char_fill, &
1795	root_area_density_lad_f%fill, &
1796	.FALSE., 'root_area_dens_r' )
1797	!
1798	!-- Inquire number of vertical soil layers
1799	CALL get_dimension_length( id_surf, &
1800	root_area_density_lad_f%nz, &
1801	'zsoil' )
1802	!
1803	!-- Allocate variable
1804	ALLOCATE( root_area_density_lad_f%var &
1805	(0:root_area_density_lad_f%nz-1, &
1806	nys:nyn,nxl:nxr) )
1807
1808	CALL get_variable( id_surf, 'root_area_dens_r', &
1809	root_area_density_lad_f%var, &
1810	nxl, nxr, nys, nyn, &
1811	0, root_area_density_lad_f%nz-1 )
1812	ELSE
1813	root_area_density_lad_f%from_file = .FALSE.
1814	ENDIF
1815	!
1816	!-- Finally, close input file
1817	CALL close_input_file( id_surf )
1818	#endif
1819	ENDIF
1820	!
1821	!-- Deallocate variable list. Will be re-allocated in case further
1822	!-- variables are read from file.
1823	IF ( ALLOCATED( var_names ) ) DEALLOCATE( var_names )
1824	!
1825	!-- Skip the following if no land-surface or urban-surface module are
1826	!-- applied. This case, no one of the following variables is used anyway.
1827	IF ( .NOT. land_surface .AND. .NOT. urban_surface ) RETURN
1828
1829	#if defined ( __netcdf )
1830	!
1831	!-- Open file in read-only mode
1832	CALL open_read_file( TRIM( input_file_static ) // &
1833	TRIM( coupling_char ) , id_surf )
1834	!
1835	!-- Inquire all variable names.
1836	!-- This will be used to check whether an optional input variable exist
1837	!-- or not.
1838	CALL inquire_num_variables( id_surf, num_vars )
1839
1840	ALLOCATE( var_names(1:num_vars) )
1841	CALL inquire_variable_names( id_surf, var_names )
1842	!
1843	!-- Read vegetation type and required attributes
1844	IF ( check_existence( var_names, 'vegetation_type' ) ) THEN
1845	vegetation_type_f%from_file = .TRUE.
1846	CALL get_attribute( id_surf, char_fill, &
1847	vegetation_type_f%fill, &
1848	.FALSE., 'vegetation_type' )
1849
1850	ALLOCATE ( vegetation_type_f%var(nys:nyn,nxl:nxr) )
1851
1852	CALL get_variable( id_surf, 'vegetation_type', &
1853	vegetation_type_f%var, nxl, nxr, nys, nyn )
1854	ELSE
1855	vegetation_type_f%from_file = .FALSE.
1856	ENDIF
1857
1858	!
1859	!-- Read soil type and required attributes
1860	IF ( check_existence( var_names, 'soil_type' ) ) THEN
1861	soil_type_f%from_file = .TRUE.
1862	!
1863	!-- Note, lod is currently not on file; skip for the moment
1864	! CALL get_attribute( id_surf, char_lod, &
1865	! soil_type_f%lod, &
1866	! .FALSE., 'soil_type' )
1867	CALL get_attribute( id_surf, char_fill, &
1868	soil_type_f%fill, &
1869	.FALSE., 'soil_type' )
1870
1871	IF ( soil_type_f%lod == 1 ) THEN
1872
1873	ALLOCATE ( soil_type_f%var_2d(nys:nyn,nxl:nxr) )
1874
1875	CALL get_variable( id_surf, 'soil_type', soil_type_f%var_2d, &
1876	nxl, nxr, nys, nyn )
1877
1878	ELSEIF ( soil_type_f%lod == 2 ) THEN
1879	!
1880	!-- Obtain number of soil layers from file.
1881	CALL get_dimension_length( id_surf, nz_soil, 'zsoil' )
1882
1883	ALLOCATE ( soil_type_f%var_3d(0:nz_soil,nys:nyn,nxl:nxr) )
1884
1885	CALL get_variable( id_surf, 'soil_type', soil_type_f%var_3d, &
1886	nxl, nxr, nys, nyn, 0, nz_soil )
1887
1888	ENDIF
1889	ELSE
1890	soil_type_f%from_file = .FALSE.
1891	ENDIF
1892
1893	!
1894	!-- Read pavement type and required attributes
1895	IF ( check_existence( var_names, 'pavement_type' ) ) THEN
1896	pavement_type_f%from_file = .TRUE.
1897	CALL get_attribute( id_surf, char_fill, &
1898	pavement_type_f%fill, .FALSE., &
1899	'pavement_type' )
1900
1901	ALLOCATE ( pavement_type_f%var(nys:nyn,nxl:nxr) )
1902
1903	CALL get_variable( id_surf, 'pavement_type', pavement_type_f%var, &
1904	nxl, nxr, nys, nyn )
1905	ELSE
1906	pavement_type_f%from_file = .FALSE.
1907	ENDIF
1908
1909	!
1910	!-- Read water type and required attributes
1911	IF ( check_existence( var_names, 'water_type' ) ) THEN
1912	water_type_f%from_file = .TRUE.
1913	CALL get_attribute( id_surf, char_fill, water_type_f%fill, &
1914	.FALSE., 'water_type' )
1915
1916	ALLOCATE ( water_type_f%var(nys:nyn,nxl:nxr) )
1917
1918	CALL get_variable( id_surf, 'water_type', water_type_f%var, &
1919	nxl, nxr, nys, nyn )
1920
1921	ELSE
1922	water_type_f%from_file = .FALSE.
1923	ENDIF
1924	!
1925	!-- Read relative surface fractions of vegetation, pavement and water.
1926	IF ( check_existence( var_names, 'surface_fraction' ) ) THEN
1927	surface_fraction_f%from_file = .TRUE.
1928	CALL get_attribute( id_surf, char_fill, &
1929	surface_fraction_f%fill, &
1930	.FALSE., 'surface_fraction' )
1931	!
1932	!-- Inquire number of surface fractions
1933	CALL get_dimension_length( id_surf, &
1934	surface_fraction_f%nf, &
1935	'nsurface_fraction' )
1936	!
1937	!-- Allocate dimension array and input array for surface fractions
1938	ALLOCATE( surface_fraction_f%nfracs(0:surface_fraction_f%nf-1) )
1939	ALLOCATE( surface_fraction_f%frac(0:surface_fraction_f%nf-1, &
1940	nys:nyn,nxl:nxr) )
1941	!
1942	!-- Get dimension of surface fractions
1943	CALL get_variable( id_surf, 'nsurface_fraction', &
1944	surface_fraction_f%nfracs )
1945	!
1946	!-- Read surface fractions
1947	CALL get_variable( id_surf, 'surface_fraction', &
1948	surface_fraction_f%frac, nxl, nxr, nys, nyn, &
1949	0, surface_fraction_f%nf-1 )
1950	ELSE
1951	surface_fraction_f%from_file = .FALSE.
1952	ENDIF
1953	!
1954	!-- Read building parameters and related information
1955	IF ( check_existence( var_names, 'building_pars' ) ) THEN
1956	building_pars_f%from_file = .TRUE.
1957	CALL get_attribute( id_surf, char_fill, &
1958	building_pars_f%fill, &
1959	.FALSE., 'building_pars' )
1960	!
1961	!-- Inquire number of building parameters
1962	CALL get_dimension_length( id_surf, &
1963	building_pars_f%np, &
1964	'nbuilding_pars' )
1965	!
1966	!-- Allocate dimension array and input array for building parameters
1967	ALLOCATE( building_pars_f%pars(0:building_pars_f%np-1) )
1968	ALLOCATE( building_pars_f%pars_xy(0:building_pars_f%np-1, &
1969	nys:nyn,nxl:nxr) )
1970	!
1971	!-- Get dimension of building parameters
1972	CALL get_variable( id_surf, 'nbuilding_pars', &
1973	building_pars_f%pars )
1974	!
1975	!-- Read building_pars
1976	CALL get_variable( id_surf, 'building_pars', &
1977	building_pars_f%pars_xy, nxl, nxr, nys, nyn, &
1978	0, building_pars_f%np-1 )
1979	ELSE
1980	building_pars_f%from_file = .FALSE.
1981	ENDIF
1982	!
1983	!-- Read building surface parameters
1984	IF ( check_existence( var_names, 'building_surface_pars' ) ) THEN
1985	building_surface_pars_f%from_file = .TRUE.
1986	CALL get_attribute( id_surf, char_fill, &
1987	building_surface_pars_f%fill, &
1988	.FALSE., 'building_surface_pars' )
1989	!
1990	!-- Read building_surface_pars
1991	CALL get_variable_surf( id_surf, 'building_surface_pars', &
1992	building_surface_pars_f )
1993	ELSE
1994	building_surface_pars_f%from_file = .FALSE.
1995	ENDIF
1996
1997	!
1998	!-- Read albedo type and required attributes
1999	IF ( check_existence( var_names, 'albedo_type' ) ) THEN
2000	albedo_type_f%from_file = .TRUE.
2001	CALL get_attribute( id_surf, char_fill, albedo_type_f%fill, &
2002	.FALSE., 'albedo_type' )
2003
2004	ALLOCATE ( albedo_type_f%var(nys:nyn,nxl:nxr) )
2005
2006	CALL get_variable( id_surf, 'albedo_type', albedo_type_f%var, &
2007	nxl, nxr, nys, nyn )
2008	ELSE
2009	albedo_type_f%from_file = .FALSE.
2010	ENDIF
2011	!
2012	!-- Read albedo parameters and related information
2013	IF ( check_existence( var_names, 'albedo_pars' ) ) THEN
2014	albedo_pars_f%from_file = .TRUE.
2015	CALL get_attribute( id_surf, char_fill, albedo_pars_f%fill, &
2016	.FALSE., 'albedo_pars' )
2017	!
2018	!-- Inquire number of albedo parameters
2019	CALL get_dimension_length( id_surf, &
2020	albedo_pars_f%np, &
2021	'nalbedo_pars' )
2022	!
2023	!-- Allocate dimension array and input array for albedo parameters
2024	ALLOCATE( albedo_pars_f%pars(0:albedo_pars_f%np-1) )
2025	ALLOCATE( albedo_pars_f%pars_xy(0:albedo_pars_f%np-1, &
2026	nys:nyn,nxl:nxr) )
2027	!
2028	!-- Get dimension of albedo parameters
2029	CALL get_variable( id_surf, 'nalbedo_pars', albedo_pars_f%pars )
2030
2031	CALL get_variable( id_surf, 'albedo_pars', albedo_pars_f%pars_xy, &
2032	nxl, nxr, nys, nyn, &
2033	0, albedo_pars_f%np-1 )
2034	ELSE
2035	albedo_pars_f%from_file = .FALSE.
2036	ENDIF
2037
2038	!
2039	!-- Read pavement parameters and related information
2040	IF ( check_existence( var_names, 'pavement_pars' ) ) THEN
2041	pavement_pars_f%from_file = .TRUE.
2042	CALL get_attribute( id_surf, char_fill, &
2043	pavement_pars_f%fill, &
2044	.FALSE., 'pavement_pars' )
2045	!
2046	!-- Inquire number of pavement parameters
2047	CALL get_dimension_length( id_surf, &
2048	pavement_pars_f%np, &
2049	'npavement_pars' )
2050	!
2051	!-- Allocate dimension array and input array for pavement parameters
2052	ALLOCATE( pavement_pars_f%pars(0:pavement_pars_f%np-1) )
2053	ALLOCATE( pavement_pars_f%pars_xy(0:pavement_pars_f%np-1, &
2054	nys:nyn,nxl:nxr) )
2055	!
2056	!-- Get dimension of pavement parameters
2057	CALL get_variable( id_surf, 'npavement_pars', pavement_pars_f%pars )
2058
2059	CALL get_variable( id_surf, 'pavement_pars', pavement_pars_f%pars_xy,&
2060	nxl, nxr, nys, nyn, &
2061	0, pavement_pars_f%np-1 )
2062	ELSE
2063	pavement_pars_f%from_file = .FALSE.
2064	ENDIF
2065
2066	!
2067	!-- Read pavement subsurface parameters and related information
2068	IF ( check_existence( var_names, 'pavement_subsurface_pars' ) ) &
2069	THEN
2070	pavement_subsurface_pars_f%from_file = .TRUE.
2071	CALL get_attribute( id_surf, char_fill, &
2072	pavement_subsurface_pars_f%fill, &
2073	.FALSE., 'pavement_subsurface_pars' )
2074	!
2075	!-- Inquire number of parameters
2076	CALL get_dimension_length( id_surf, &
2077	pavement_subsurface_pars_f%np, &
2078	'npavement_subsurface_pars' )
2079	!
2080	!-- Inquire number of soil layers
2081	CALL get_dimension_length( id_surf, &
2082	pavement_subsurface_pars_f%nz, &
2083	'zsoil' )
2084	!
2085	!-- Allocate dimension array and input array for pavement parameters
2086	ALLOCATE( pavement_subsurface_pars_f%pars &
2087	(0:pavement_subsurface_pars_f%np-1) )
2088	ALLOCATE( pavement_subsurface_pars_f%pars_xyz &
2089	(0:pavement_subsurface_pars_f%np-1, &
2090	0:pavement_subsurface_pars_f%nz-1, &
2091	nys:nyn,nxl:nxr) )
2092	!
2093	!-- Get dimension of pavement parameters
2094	CALL get_variable( id_surf, 'npavement_subsurface_pars', &
2095	pavement_subsurface_pars_f%pars )
2096
2097	CALL get_variable( id_surf, 'pavement_subsurface_pars', &
2098	pavement_subsurface_pars_f%pars_xyz, &
2099	nxl, nxr, nys, nyn, &
2100	0, pavement_subsurface_pars_f%nz-1, &
2101	0, pavement_subsurface_pars_f%np-1 )
2102	ELSE
2103	pavement_subsurface_pars_f%from_file = .FALSE.
2104	ENDIF
2105
2106
2107	!
2108	!-- Read vegetation parameters and related information
2109	IF ( check_existence( var_names, 'vegetation_pars' ) ) THEN
2110	vegetation_pars_f%from_file = .TRUE.
2111	CALL get_attribute( id_surf, char_fill, &
2112	vegetation_pars_f%fill, &
2113	.FALSE., 'vegetation_pars' )
2114	!
2115	!-- Inquire number of vegetation parameters
2116	CALL get_dimension_length( id_surf, &
2117	vegetation_pars_f%np, &
2118	'nvegetation_pars' )
2119	!
2120	!-- Allocate dimension array and input array for surface fractions
2121	ALLOCATE( vegetation_pars_f%pars(0:vegetation_pars_f%np-1) )
2122	ALLOCATE( vegetation_pars_f%pars_xy(0:vegetation_pars_f%np-1, &
2123	nys:nyn,nxl:nxr) )
2124	!
2125	!-- Get dimension of the parameters
2126	CALL get_variable( id_surf, 'nvegetation_pars', &
2127	vegetation_pars_f%pars )
2128
2129	CALL get_variable( id_surf, 'vegetation_pars', &
2130	vegetation_pars_f%pars_xy, nxl, nxr, nys, nyn, &
2131	0, vegetation_pars_f%np-1 )
2132	ELSE
2133	vegetation_pars_f%from_file = .FALSE.
2134	ENDIF
2135
2136	!
2137	!-- Read root parameters/distribution and related information
2138	IF ( check_existence( var_names, 'soil_pars' ) ) THEN
2139	soil_pars_f%from_file = .TRUE.
2140	CALL get_attribute( id_surf, char_fill, &
2141	soil_pars_f%fill, &
2142	.FALSE., 'soil_pars' )
2143
2144	CALL get_attribute( id_surf, char_lod, &
2145	soil_pars_f%lod, &
2146	.FALSE., 'soil_pars' )
2147
2148	!
2149	!-- Inquire number of soil parameters
2150	CALL get_dimension_length( id_surf, &
2151	soil_pars_f%np, &
2152	'nsoil_pars' )
2153	!
2154	!-- Read parameters array
2155	ALLOCATE( soil_pars_f%pars(0:soil_pars_f%np-1) )
2156	CALL get_variable( id_surf, 'nsoil_pars', soil_pars_f%pars )
2157
2158	!
2159	!-- In case of level of detail 2, also inquire number of vertical
2160	!-- soil layers, allocate memory and read the respective dimension
2161	IF ( soil_pars_f%lod == 2 ) THEN
2162	CALL get_dimension_length( id_surf, &
2163	soil_pars_f%nz, &
2164	'zsoil' )
2165
2166	ALLOCATE( soil_pars_f%layers(0:soil_pars_f%nz-1) )
2167	CALL get_variable( id_surf, 'zsoil', soil_pars_f%layers )
2168
2169	ENDIF
2170
2171	!
2172	!-- Read soil parameters, depending on level of detail
2173	IF ( soil_pars_f%lod == 1 ) THEN
2174	ALLOCATE( soil_pars_f%pars_xy(0:soil_pars_f%np-1, &
2175	nys:nyn,nxl:nxr) )
2176
2177	CALL get_variable( id_surf, 'soil_pars', soil_pars_f%pars_xy, &
2178	nxl, nxr, nys, nyn, 0, soil_pars_f%np-1 )
2179
2180	ELSEIF ( soil_pars_f%lod == 2 ) THEN
2181	ALLOCATE( soil_pars_f%pars_xyz(0:soil_pars_f%np-1, &
2182	0:soil_pars_f%nz-1, &
2183	nys:nyn,nxl:nxr) )
2184	CALL get_variable( id_surf, 'soil_pars', &
2185	soil_pars_f%pars_xyz, &
2186	nxl, nxr, nys, nyn, 0, soil_pars_f%nz-1, &
2187	0, soil_pars_f%np-1 )
2188
2189	ENDIF
2190	ELSE
2191	soil_pars_f%from_file = .FALSE.
2192	ENDIF
2193
2194	!
2195	!-- Read water parameters and related information
2196	IF ( check_existence( var_names, 'water_pars' ) ) THEN
2197	water_pars_f%from_file = .TRUE.
2198	CALL get_attribute( id_surf, char_fill, &
2199	water_pars_f%fill, &
2200	.FALSE., 'water_pars' )
2201	!
2202	!-- Inquire number of water parameters
2203	CALL get_dimension_length( id_surf, &
2204	water_pars_f%np, &
2205	'nwater_pars' )
2206	!
2207	!-- Allocate dimension array and input array for water parameters
2208	ALLOCATE( water_pars_f%pars(0:water_pars_f%np-1) )
2209	ALLOCATE( water_pars_f%pars_xy(0:water_pars_f%np-1, &
2210	nys:nyn,nxl:nxr) )
2211	!
2212	!-- Get dimension of water parameters
2213	CALL get_variable( id_surf, 'nwater_pars', water_pars_f%pars )
2214
2215	CALL get_variable( id_surf, 'water_pars', water_pars_f%pars_xy, &
2216	nxl, nxr, nys, nyn, 0, water_pars_f%np-1 )
2217	ELSE
2218	water_pars_f%from_file = .FALSE.
2219	ENDIF
2220	!
2221	!-- Read root area density - parametrized vegetation
2222	IF ( check_existence( var_names, 'root_area_dens_s' ) ) THEN
2223	root_area_density_lsm_f%from_file = .TRUE.
2224	CALL get_attribute( id_surf, char_fill, &
2225	root_area_density_lsm_f%fill, &
2226	.FALSE., 'root_area_dens_s' )
2227	!
2228	!-- Obtain number of soil layers from file and allocate variable
2229	CALL get_dimension_length( id_surf, &
2230	root_area_density_lsm_f%nz, &
2231	'zsoil' )
2232	ALLOCATE( root_area_density_lsm_f%var &
2233	(0:root_area_density_lsm_f%nz-1, &
2234	nys:nyn,nxl:nxr) )
2235
2236	!
2237	!-- Read root-area density
2238	CALL get_variable( id_surf, 'root_area_dens_s', &
2239	root_area_density_lsm_f%var, &
2240	nxl, nxr, nys, nyn, &
2241	0, root_area_density_lsm_f%nz-1 )
2242
2243	ELSE
2244	root_area_density_lsm_f%from_file = .FALSE.
2245	ENDIF
2246	!
2247	!-- Read street type and street crossing
2248	IF ( check_existence( var_names, 'street_type' ) ) THEN
2249	street_type_f%from_file = .TRUE.
2250	CALL get_attribute( id_surf, char_fill, &
2251	street_type_f%fill, .FALSE., &
2252	'street_type' )
2253
2254	ALLOCATE ( street_type_f%var(nys:nyn,nxl:nxr) )
2255
2256	CALL get_variable( id_surf, 'street_type', street_type_f%var, &
2257	nxl, nxr, nys, nyn )
2258	ELSE
2259	street_type_f%from_file = .FALSE.
2260	ENDIF
2261
2262	IF ( check_existence( var_names, 'street_crossing' ) ) THEN
2263	street_crossing_f%from_file = .TRUE.
2264	CALL get_attribute( id_surf, char_fill, &
2265	street_crossing_f%fill, .FALSE., &
2266	'street_crossing' )
2267
2268	ALLOCATE ( street_crossing_f%var(nys:nyn,nxl:nxr) )
2269
2270	CALL get_variable( id_surf, 'street_crossing', &
2271	street_crossing_f%var, nxl, nxr, nys, nyn )
2272
2273	ELSE
2274	street_crossing_f%from_file = .FALSE.
2275	ENDIF
2276	!
2277	!-- Still missing: root_resolved and building_surface_pars.
2278	!-- Will be implemented as soon as they are available.
2279
2280	!
2281	!-- Finally, close input file
2282	CALL close_input_file( id_surf )
2283	#endif
2284	!
2285	!-- End of CPU measurement
2286	CALL cpu_log( log_point_s(82), 'NetCDF input', 'stop' )
2287	!
2288	!-- Exchange ghost points for surface variables. Therefore, resize
2289	!-- variables.
2290	IF ( albedo_type_f%from_file ) THEN
2291	CALL resize_array_2d_int8( albedo_type_f%var, nys, nyn, nxl, nxr )
2292	CALL exchange_horiz_2d_byte( albedo_type_f%var, nys, nyn, nxl, nxr, &
2293	nbgp )
2294	ENDIF
2295	IF ( pavement_type_f%from_file ) THEN
2296	CALL resize_array_2d_int8( pavement_type_f%var, nys, nyn, nxl, nxr )
2297	CALL exchange_horiz_2d_byte( pavement_type_f%var, nys, nyn, nxl, nxr,&
2298	nbgp )
2299	ENDIF
2300	IF ( soil_type_f%from_file .AND. ALLOCATED( soil_type_f%var_2d ) ) THEN
2301	CALL resize_array_2d_int8( soil_type_f%var_2d, nys, nyn, nxl, nxr )
2302	CALL exchange_horiz_2d_byte( soil_type_f%var_2d, nys, nyn, nxl, nxr, &
2303	nbgp )
2304	ENDIF
2305	IF ( vegetation_type_f%from_file ) THEN
2306	CALL resize_array_2d_int8( vegetation_type_f%var, nys, nyn, nxl, nxr )
2307	CALL exchange_horiz_2d_byte( vegetation_type_f%var, nys, nyn, nxl, &
2308	nxr, nbgp )
2309	ENDIF
2310	IF ( water_type_f%from_file ) THEN
2311	CALL resize_array_2d_int8( water_type_f%var, nys, nyn, nxl, nxr )
2312	CALL exchange_horiz_2d_byte( water_type_f%var, nys, nyn, nxl, nxr, &
2313	nbgp )
2314	ENDIF
2315	!
2316	!-- Exchange ghost points for 3/4-D variables. For the sake of simplicity,
2317	!-- loop further dimensions to use 2D exchange routines. Unfortunately this
2318	!-- is necessary, else new MPI-data types need to be introduced just for
2319	!-- 2 variables.
2320	IF ( soil_type_f%from_file .AND. ALLOCATED( soil_type_f%var_3d ) ) &
2321	THEN
2322	CALL resize_array_3d_int8( soil_type_f%var_3d, 0, nz_soil, &
2323	nys, nyn, nxl, nxr )
2324	DO k = 0, nz_soil
2325	CALL exchange_horiz_2d_int( &
2326	soil_type_f%var_3d(k,:,:), nys, nyn, nxl, nxr, nbgp )
2327	ENDDO
2328	ENDIF
2329
2330	IF ( surface_fraction_f%from_file ) THEN
2331	CALL resize_array_3d_real( surface_fraction_f%frac, &
2332	0, surface_fraction_f%nf-1, &
2333	nys, nyn, nxl, nxr )
2334	DO k = 0, surface_fraction_f%nf-1
2335	CALL exchange_horiz_2d( surface_fraction_f%frac(k,:,:), nbgp )
2336	ENDDO
2337	ENDIF
2338
2339	IF ( building_pars_f%from_file ) THEN
2340	CALL resize_array_3d_real( building_pars_f%pars_xy, &
2341	0, building_pars_f%np-1, &
2342	nys, nyn, nxl, nxr )
2343	DO k = 0, building_pars_f%np-1
2344	CALL exchange_horiz_2d( building_pars_f%pars_xy(k,:,:), nbgp )
2345	ENDDO
2346	ENDIF
2347
2348	IF ( albedo_pars_f%from_file ) THEN
2349	CALL resize_array_3d_real( albedo_pars_f%pars_xy, &
2350	0, albedo_pars_f%np-1, &
2351	nys, nyn, nxl, nxr )
2352	DO k = 0, albedo_pars_f%np-1
2353	CALL exchange_horiz_2d( albedo_pars_f%pars_xy(k,:,:), nbgp )
2354	ENDDO
2355	ENDIF
2356
2357	IF ( pavement_pars_f%from_file ) THEN
2358	CALL resize_array_3d_real( pavement_pars_f%pars_xy, &
2359	0, pavement_pars_f%np-1, &
2360	nys, nyn, nxl, nxr )
2361	DO k = 0, pavement_pars_f%np-1
2362	CALL exchange_horiz_2d( pavement_pars_f%pars_xy(k,:,:), nbgp )
2363	ENDDO
2364	ENDIF
2365
2366	IF ( vegetation_pars_f%from_file ) THEN
2367	CALL resize_array_3d_real( vegetation_pars_f%pars_xy, &
2368	0, vegetation_pars_f%np-1, &
2369	nys, nyn, nxl, nxr )
2370	DO k = 0, vegetation_pars_f%np-1
2371	CALL exchange_horiz_2d( vegetation_pars_f%pars_xy(k,:,:), nbgp )
2372	ENDDO
2373	ENDIF
2374
2375	IF ( water_pars_f%from_file ) THEN
2376	CALL resize_array_3d_real( water_pars_f%pars_xy, &
2377	0, water_pars_f%np-1, &
2378	nys, nyn, nxl, nxr )
2379	DO k = 0, water_pars_f%np-1
2380	CALL exchange_horiz_2d( water_pars_f%pars_xy(k,:,:), nbgp )
2381	ENDDO
2382	ENDIF
2383
2384	IF ( root_area_density_lsm_f%from_file ) THEN
2385	CALL resize_array_3d_real( root_area_density_lsm_f%var, &
2386	0, root_area_density_lsm_f%nz-1, &
2387	nys, nyn, nxl, nxr )
2388	DO k = 0, root_area_density_lsm_f%nz-1
2389	CALL exchange_horiz_2d( root_area_density_lsm_f%var(k,:,:), nbgp )
2390	ENDDO
2391	ENDIF
2392
2393	IF ( soil_pars_f%from_file ) THEN
2394	IF ( soil_pars_f%lod == 1 ) THEN
2395
2396	CALL resize_array_3d_real( soil_pars_f%pars_xy, &
2397	0, soil_pars_f%np-1, &
2398	nys, nyn, nxl, nxr )
2399	DO k = 0, soil_pars_f%np-1
2400	CALL exchange_horiz_2d( soil_pars_f%pars_xy(k,:,:), nbgp )
2401	ENDDO
2402
2403	ELSEIF ( soil_pars_f%lod == 2 ) THEN
2404	CALL resize_array_4d_real( soil_pars_f%pars_xyz, &
2405	0, soil_pars_f%np-1, &
2406	0, soil_pars_f%nz-1, &
2407	nys, nyn, nxl, nxr )
2408
2409	DO k2 = 0, soil_pars_f%nz-1
2410	DO k = 0, soil_pars_f%np-1
2411	CALL exchange_horiz_2d( soil_pars_f%pars_xyz(k,k2,:,:), &
2412	nbgp )
2413	ENDDO
2414	ENDDO
2415	ENDIF
2416	ENDIF
2417
2418	IF ( pavement_subsurface_pars_f%from_file ) THEN
2419	CALL resize_array_4d_real( pavement_subsurface_pars_f%pars_xyz, &
2420	0, pavement_subsurface_pars_f%np-1, &
2421	0, pavement_subsurface_pars_f%nz-1, &
2422	nys, nyn, nxl, nxr )
2423
2424	DO k2 = 0, pavement_subsurface_pars_f%nz-1
2425	DO k = 0, pavement_subsurface_pars_f%np-1
2426	CALL exchange_horiz_2d( &
2427	pavement_subsurface_pars_f%pars_xyz(k,k2,:,:), nbgp )
2428	ENDDO
2429	ENDDO
2430	ENDIF
2431
2432	END SUBROUTINE netcdf_data_input_surface_data
2433
2434	!------------------------------------------------------------------------------!
2435	! Description:
2436	! ------------
2437	!> Reads uvem lookup table information.
2438	!------------------------------------------------------------------------------!
2439	SUBROUTINE netcdf_data_input_uvem
2440
2441	USE indices, &
2442	ONLY: nxl, nxr, nyn, nys
2443
2444	IMPLICIT NONE
2445
2446	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names !< variable names in static input file
2447
2448
2449	INTEGER(iwp) :: id_uvem !< NetCDF id of uvem lookup table input file
2450	INTEGER(iwp) :: nli = 35 !< dimension length of lookup table in x
2451	INTEGER(iwp) :: nlj = 9 !< dimension length of lookup table in y
2452	INTEGER(iwp) :: nlk = 90 !< dimension length of lookup table in z
2453	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
2454	!
2455	!-- Input via uv exposure model lookup table input
2456	IF ( input_pids_uvem ) THEN
2457
2458	#if defined ( __netcdf )
2459	!
2460	!-- Open file in read-only mode
2461	CALL open_read_file( TRIM( input_file_uvem ) // &
2462	TRIM( coupling_char ), id_uvem )
2463	!
2464	!-- At first, inquire all variable names.
2465	!-- This will be used to check whether an input variable exist or not.
2466	CALL inquire_num_variables( id_uvem, num_vars )
2467	!
2468	!-- Allocate memory to store variable names and inquire them.
2469	ALLOCATE( var_names(1:num_vars) )
2470	CALL inquire_variable_names( id_uvem, var_names )
2471	!
2472	!-- uvem integration
2473	IF ( check_existence( var_names, 'int_factors' ) ) THEN
2474	uvem_integration_f%from_file = .TRUE.
2475	!
2476	!-- Input 2D uvem integration.
2477	ALLOCATE ( uvem_integration_f%var(0:nlj,0:nli) )
2478
2479	CALL get_variable( id_uvem, 'int_factors', uvem_integration_f%var, 0, nli, 0, nlj )
2480	ELSE
2481	uvem_integration_f%from_file = .FALSE.
2482	ENDIF
2483	!
2484	!-- uvem irradiance
2485	IF ( check_existence( var_names, 'irradiance' ) ) THEN
2486	uvem_irradiance_f%from_file = .TRUE.
2487	!
2488	!-- Input 2D uvem irradiance.
2489	ALLOCATE ( uvem_irradiance_f%var(0:nlk, 0:2) )
2490
2491	CALL get_variable( id_uvem, 'irradiance', uvem_irradiance_f%var, 0, 2, 0, nlk )
2492	ELSE
2493	uvem_irradiance_f%from_file = .FALSE.
2494	ENDIF
2495	!
2496	!-- uvem porjection areas
2497	IF ( check_existence( var_names, 'projarea' ) ) THEN
2498	uvem_projarea_f%from_file = .TRUE.
2499	!
2500	!-- Input 3D uvem projection area (human geometgry)
2501	ALLOCATE ( uvem_projarea_f%var(0:2,0:nlj,0:nli) )
2502
2503	CALL get_variable( id_uvem, 'projarea', uvem_projarea_f%var, 0, nli, 0, nlj, 0, 2 )
2504	ELSE
2505	uvem_projarea_f%from_file = .FALSE.
2506	ENDIF
2507	!
2508	!-- uvem radiance
2509	IF ( check_existence( var_names, 'radiance' ) ) THEN
2510	uvem_radiance_f%from_file = .TRUE.
2511	!
2512	!-- Input 3D uvem radiance
2513	ALLOCATE ( uvem_radiance_f%var(0:nlk,0:nlj,0:nli) )
2514
2515	CALL get_variable( id_uvem, 'radiance', uvem_radiance_f%var, 0, nli, 0, nlj, 0, nlk )
2516	ELSE
2517	uvem_radiance_f%from_file = .FALSE.
2518	ENDIF
2519	!
2520	!-- Read building obstruction
2521	IF ( check_existence( var_names, 'obstruction' ) ) THEN
2522	building_obstruction_full%from_file = .TRUE.
2523	!-- Input 3D uvem building obstruction
2524	ALLOCATE ( building_obstruction_full%var_3d(0:44,0:2,0:2) )
2525	CALL get_variable( id_uvem, 'obstruction', building_obstruction_full%var_3d,0, 2, 0, 2, 0, 44 )
2526	ELSE
2527	building_obstruction_full%from_file = .FALSE.
2528	ENDIF
2529	!
2530	IF ( check_existence( var_names, 'obstruction' ) ) THEN
2531	building_obstruction_f%from_file = .TRUE.
2532	!
2533	!-- Input 3D uvem building obstruction
2534	ALLOCATE ( building_obstruction_f%var_3d(0:44,nys:nyn,nxl:nxr) )
2535	!
2536	CALL get_variable( id_uvem, 'obstruction', building_obstruction_f%var_3d, &
2537	nxl, nxr, nys, nyn, 0, 44 )
2538	ELSE
2539	building_obstruction_f%from_file = .FALSE.
2540	ENDIF
2541	!
2542	!-- Close uvem lookup table input file
2543	CALL close_input_file( id_uvem )
2544	#else
2545	CONTINUE
2546	#endif
2547	ENDIF
2548	END SUBROUTINE netcdf_data_input_uvem
2549
2550	!------------------------------------------------------------------------------!
2551	! Description:
2552	! ------------
2553	!> Reads orography and building information.
2554	!------------------------------------------------------------------------------!
2555	SUBROUTINE netcdf_data_input_topo
2556
2557	USE control_parameters, &
2558	ONLY: message_string, topography
2559
2560	USE grid_variables, &
2561	ONLY: dx, dy
2562
2563	USE indices, &
2564	ONLY: nbgp, nx, nxl, nxr, ny, nyn, nys, nzb
2565
2566
2567	IMPLICIT NONE
2568
2569	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names !< variable names in static input file
2570
2571
2572	INTEGER(iwp) :: i !< running index along x-direction
2573	INTEGER(iwp) :: ii !< running index for IO blocks
2574	INTEGER(iwp) :: id_topo !< NetCDF id of topograhy input file
2575	INTEGER(iwp) :: j !< running index along y-direction
2576	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
2577	INTEGER(iwp) :: skip_n_rows !< counting variable to skip rows while reading topography file
2578
2579	REAL(wp) :: dum !< dummy variable to skip columns while reading topography file
2580	!
2581	!-- CPU measurement
2582	CALL cpu_log( log_point_s(83), 'NetCDF/ASCII input topo', 'start' )
2583
2584	!
2585	!-- Input via palm-input data standard
2586	IF ( input_pids_static ) THEN
2587	#if defined ( __netcdf )
2588	!
2589	!-- Open file in read-only mode
2590	CALL open_read_file( TRIM( input_file_static ) // &
2591	TRIM( coupling_char ), id_topo )
2592	!
2593	!-- At first, inquire all variable names.
2594	!-- This will be used to check whether an input variable exist
2595	!-- or not.
2596	CALL inquire_num_variables( id_topo, num_vars )
2597	!
2598	!-- Allocate memory to store variable names and inquire them.
2599	ALLOCATE( var_names(1:num_vars) )
2600	CALL inquire_variable_names( id_topo, var_names )
2601	!
2602	!-- Read x, y - dimensions. Only required for consistency checks.
2603	CALL get_dimension_length( id_topo, dim_static%nx, 'x' )
2604	CALL get_dimension_length( id_topo, dim_static%ny, 'y' )
2605	ALLOCATE( dim_static%x(0:dim_static%nx-1) )
2606	ALLOCATE( dim_static%y(0:dim_static%ny-1) )
2607	CALL get_variable( id_topo, 'x', dim_static%x )
2608	CALL get_variable( id_topo, 'y', dim_static%y )
2609	!
2610	!-- Check whether dimension size in input file matches the model dimensions
2611	IF ( dim_static%nx-1 /= nx .OR. dim_static%ny-1 /= ny ) THEN
2612	message_string = 'Static input file: horizontal dimension in ' // &
2613	'x- and/or y-direction ' // &
2614	'do not match the respective model dimension'
2615	CALL message( 'netcdf_data_input_mod', 'PA0548', 1, 2, 0, 6, 0 )
2616	ENDIF
2617	!
2618	!-- Check if grid spacing of provided input data matches the respective
2619	!-- grid spacing in the model.
2620	IF ( ABS( dim_static%x(1) - dim_static%x(0) - dx ) > 10E-6_wp .OR. &
2621	ABS( dim_static%y(1) - dim_static%y(0) - dy ) > 10E-6_wp ) THEN
2622	message_string = 'Static input file: horizontal grid spacing ' // &
2623	'in x- and/or y-direction ' // &
2624	'do not match the respective model grid spacing.'
2625	CALL message( 'netcdf_data_input_mod', 'PA0549', 1, 2, 0, 6, 0 )
2626	ENDIF
2627	!
2628	!-- Terrain height. First, get variable-related _FillValue attribute
2629	IF ( check_existence( var_names, 'zt' ) ) THEN
2630	terrain_height_f%from_file = .TRUE.
2631	CALL get_attribute( id_topo, char_fill, terrain_height_f%fill, &
2632	.FALSE., 'zt' )
2633	!
2634	!-- Input 2D terrain height.
2635	ALLOCATE ( terrain_height_f%var(nys:nyn,nxl:nxr) )
2636
2637	CALL get_variable( id_topo, 'zt', terrain_height_f%var, &
2638	nxl, nxr, nys, nyn )
2639
2640	ELSE
2641	terrain_height_f%from_file = .FALSE.
2642	ENDIF
2643
2644	!
2645	!-- Read building height. First, read its _FillValue attribute,
2646	!-- as well as lod attribute
2647	buildings_f%from_file = .FALSE.
2648	IF ( check_existence( var_names, 'buildings_2d' ) ) THEN
2649	buildings_f%from_file = .TRUE.
2650	CALL get_attribute( id_topo, char_lod, buildings_f%lod, &
2651	.FALSE., 'buildings_2d' )
2652
2653	CALL get_attribute( id_topo, char_fill, buildings_f%fill1, &
2654	.FALSE., 'buildings_2d' )
2655
2656	!
2657	!-- Read 2D buildings
2658	IF ( buildings_f%lod == 1 ) THEN
2659	ALLOCATE ( buildings_f%var_2d(nys:nyn,nxl:nxr) )
2660
2661	CALL get_variable( id_topo, 'buildings_2d', &
2662	buildings_f%var_2d, &
2663	nxl, nxr, nys, nyn )
2664	ELSE
2665	message_string = 'NetCDF attribute lod ' // &
2666	'(level of detail) is not set ' // &
2667	'properly for buildings_2d.'
2668	CALL message( 'netcdf_data_input_mod', 'PA0540', &
2669	1, 2, 0, 6, 0 )
2670	ENDIF
2671	ENDIF
2672	!
2673	!-- If available, also read 3D building information. If both are
2674	!-- available, use 3D information.
2675	IF ( check_existence( var_names, 'buildings_3d' ) ) THEN
2676	buildings_f%from_file = .TRUE.
2677	CALL get_attribute( id_topo, char_lod, buildings_f%lod, &
2678	.FALSE., 'buildings_3d' )
2679
2680	CALL get_attribute( id_topo, char_fill, buildings_f%fill2, &
2681	.FALSE., 'buildings_3d' )
2682
2683	CALL get_dimension_length( id_topo, buildings_f%nz, 'z' )
2684	!
2685	!-- Read 3D buildings
2686	IF ( buildings_f%lod == 2 ) THEN
2687	ALLOCATE( buildings_f%z(nzb:buildings_f%nz-1) )
2688	CALL get_variable( id_topo, 'z', buildings_f%z )
2689
2690	ALLOCATE( buildings_f%var_3d(nzb:buildings_f%nz-1, &
2691	nys:nyn,nxl:nxr) )
2692	buildings_f%var_3d = 0
2693
2694	CALL get_variable( id_topo, 'buildings_3d', &
2695	buildings_f%var_3d, &
2696	nxl, nxr, nys, nyn, 0, buildings_f%nz-1 )
2697	ELSE
2698	message_string = 'NetCDF attribute lod ' // &
2699	'(level of detail) is not set ' // &
2700	'properly for buildings_3d.'
2701	CALL message( 'netcdf_data_input_mod', 'PA0541', &
2702	1, 2, 0, 6, 0 )
2703	ENDIF
2704	ENDIF
2705	!
2706	!-- Read building IDs and its FillValue attribute. Further required
2707	!-- for mapping buildings on top of orography.
2708	IF ( check_existence( var_names, 'building_id' ) ) THEN
2709	building_id_f%from_file = .TRUE.
2710	CALL get_attribute( id_topo, char_fill, &
2711	building_id_f%fill, .FALSE., &
2712	'building_id' )
2713
2714	ALLOCATE ( building_id_f%var(nys:nyn,nxl:nxr) )
2715
2716	CALL get_variable( id_topo, 'building_id', building_id_f%var, &
2717	nxl, nxr, nys, nyn )
2718	ELSE
2719	building_id_f%from_file = .FALSE.
2720	ENDIF
2721	!
2722	!-- Read building_type and required attributes.
2723	IF ( check_existence( var_names, 'building_type' ) ) THEN
2724	building_type_f%from_file = .TRUE.
2725	CALL get_attribute( id_topo, char_fill, &
2726	building_type_f%fill, .FALSE., &
2727	'building_type' )
2728
2729	ALLOCATE ( building_type_f%var(nys:nyn,nxl:nxr) )
2730
2731	CALL get_variable( id_topo, 'building_type', building_type_f%var, &
2732	nxl, nxr, nys, nyn )
2733
2734	ELSE
2735	building_type_f%from_file = .FALSE.
2736	ENDIF
2737	!
2738	!-- Close topography input file
2739	CALL close_input_file( id_topo )
2740	#else
2741	CONTINUE
2742	#endif
2743	!
2744	!-- ASCII input
2745	ELSEIF ( TRIM( topography ) == 'read_from_file' ) THEN
2746
2747	DO ii = 0, io_blocks-1
2748	IF ( ii == io_group ) THEN
2749
2750	OPEN( 90, FILE='TOPOGRAPHY_DATA'//TRIM( coupling_char ), &
2751	STATUS='OLD', FORM='FORMATTED', ERR=10 )
2752	!
2753	!-- Read topography PE-wise. Rows are read from nyn to nys, columns
2754	!-- are read from nxl to nxr. At first, ny-nyn rows need to be skipped.
2755	skip_n_rows = 0
2756	DO WHILE ( skip_n_rows < ny - nyn )
2757	READ( 90, * )
2758	skip_n_rows = skip_n_rows + 1
2759	ENDDO
2760	!
2761	!-- Read data from nyn to nys and nxl to nxr. Therefore, skip
2762	!-- column until nxl-1 is reached
2763	ALLOCATE ( buildings_f%var_2d(nys:nyn,nxl:nxr) )
2764	DO j = nyn, nys, -1
2765	READ( 90, *, ERR=11, END=11 ) &
2766	( dum, i = 0, nxl-1 ), &
2767	( buildings_f%var_2d(j,i), i = nxl, nxr )
2768	ENDDO
2769
2770	GOTO 12
2771
2772	10 message_string = 'file TOPOGRAPHY_DATA'// &
2773	TRIM( coupling_char )// ' does not exist'
2774	CALL message( 'netcdf_data_input_mod', 'PA0208', 1, 2, 0, 6, 0 )
2775
2776	11 message_string = 'errors in file TOPOGRAPHY_DATA'// &
2777	TRIM( coupling_char )
2778	CALL message( 'netcdf_data_input_mod', 'PA0209', 2, 2, 0, 6, 0 )
2779
2780	12 CLOSE( 90 )
2781	buildings_f%from_file = .TRUE.
2782
2783	ENDIF
2784	#if defined( __parallel )
2785	CALL MPI_BARRIER( comm2d, ierr )
2786	#endif
2787	ENDDO
2788
2789	ENDIF
2790	!
2791	!-- End of CPU measurement
2792	CALL cpu_log( log_point_s(83), 'NetCDF/ASCII input topo', 'stop' )
2793	!
2794	!-- Check for minimum requirement to setup building topography. If buildings
2795	!-- are provided, also an ID and a type are required.
2796	!-- Note, doing this check in check_parameters
2797	!-- will be too late (data will be used for grid inititialization before).
2798	IF ( input_pids_static ) THEN
2799	IF ( buildings_f%from_file .AND. &
2800	.NOT. building_id_f%from_file ) THEN
2801	message_string = 'If building heights are prescribed in ' // &
2802	'static input file, also an ID is required.'
2803	CALL message( 'netcdf_data_input_mod', 'PA0542', 1, 2, 0, 6, 0 )
2804	ENDIF
2805	ENDIF
2806	!
2807	!-- In case no terrain height is provided by static input file, allocate
2808	!-- array nevertheless and set terrain height to 0, which simplifies
2809	!-- topography initialization.
2810	IF ( .NOT. terrain_height_f%from_file ) THEN
2811	ALLOCATE ( terrain_height_f%var(nys:nyn,nxl:nxr) )
2812	terrain_height_f%var = 0.0_wp
2813	ENDIF
2814	!
2815	!-- Finally, exchange 1 ghost point for building ID and type.
2816	!-- In case of non-cyclic boundary conditions set Neumann conditions at the
2817	!-- lateral boundaries.
2818	IF ( building_id_f%from_file ) THEN
2819	CALL resize_array_2d_int32( building_id_f%var, nys, nyn, nxl, nxr )
2820	CALL exchange_horiz_2d_int( building_id_f%var, nys, nyn, nxl, nxr, &
2821	nbgp )
2822	ENDIF
2823
2824	IF ( building_type_f%from_file ) THEN
2825	CALL resize_array_2d_int8( building_type_f%var, nys, nyn, nxl, nxr )
2826	CALL exchange_horiz_2d_byte( building_type_f%var, nys, nyn, nxl, nxr, &
2827	nbgp )
2828	ENDIF
2829
2830	END SUBROUTINE netcdf_data_input_topo
2831
2832	!------------------------------------------------------------------------------!
2833	! Description:
2834	! ------------
2835	!> Reads initialization data of u, v, w, pt, q, geostrophic wind components,
2836	!> as well as soil moisture and soil temperature, derived from larger-scale
2837	!> model (COSMO) by Inifor.
2838	!------------------------------------------------------------------------------!
2839	SUBROUTINE netcdf_data_input_init_3d
2840
2841	USE arrays_3d, &
2842	ONLY: q, pt, u, v, w, zu, zw
2843
2844	USE control_parameters, &
2845	ONLY: air_chemistry, bc_lr_cyc, bc_ns_cyc, humidity, &
2846	message_string, neutral
2847
2848	USE indices, &
2849	ONLY: nx, nxl, nxlu, nxr, ny, nyn, nys, nysv, nzb, nz, nzt
2850
2851	IMPLICIT NONE
2852
2853	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names
2854
2855	LOGICAL :: dynamic_3d = .TRUE. !< flag indicating that 3D data is read from dynamic file
2856
2857	INTEGER(iwp) :: id_dynamic !< NetCDF id of dynamic input file
2858	INTEGER(iwp) :: n !< running index for chemistry variables
2859	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
2860
2861	LOGICAL :: check_passed !< flag indicating if a check passed
2862
2863	!
2864	!-- Skip routine if no input file with dynamic input data is available.
2865	IF ( .NOT. input_pids_dynamic ) RETURN
2866	!
2867	!-- Please note, Inifor is designed to provide initial data for u and v for
2868	!-- the prognostic grid points in case of lateral Dirichlet conditions.
2869	!-- This means that Inifor provides data from nxlu:nxr (for u) and
2870	!-- from nysv:nyn (for v) at the left and south domain boundary, respectively.
2871	!-- However, as work-around for the moment, PALM will run with cyclic
2872	!-- conditions and will be initialized with data provided by Inifor
2873	!-- boundaries in case of Dirichlet.
2874	!-- Hence, simply set set nxlu/nysv to 1 (will be reset to its original value
2875	!-- at the end of this routine.
2876	IF ( bc_lr_cyc .AND. nxl == 0 ) nxlu = 1
2877	IF ( bc_ns_cyc .AND. nys == 0 ) nysv = 1
2878
2879	!
2880	!-- CPU measurement
2881	CALL cpu_log( log_point_s(85), 'NetCDF input init', 'start' )
2882
2883	#if defined ( __netcdf )
2884	!
2885	!-- Open file in read-only mode
2886	CALL open_read_file( TRIM( input_file_dynamic ) // &
2887	TRIM( coupling_char ), id_dynamic )
2888
2889	!
2890	!-- At first, inquire all variable names.
2891	CALL inquire_num_variables( id_dynamic, num_vars )
2892	!
2893	!-- Allocate memory to store variable names.
2894	ALLOCATE( var_names(1:num_vars) )
2895	CALL inquire_variable_names( id_dynamic, var_names )
2896	!
2897	!-- Read vertical dimension of scalar und w grid.
2898	CALL get_dimension_length( id_dynamic, init_3d%nzu, 'z' )
2899	CALL get_dimension_length( id_dynamic, init_3d%nzw, 'zw' )
2900	!
2901	!-- Read also the horizontal dimensions. These are used just used fo
2902	!-- checking the compatibility with the PALM grid before reading.
2903	CALL get_dimension_length( id_dynamic, init_3d%nx, 'x' )
2904	CALL get_dimension_length( id_dynamic, init_3d%nxu, 'xu' )
2905	CALL get_dimension_length( id_dynamic, init_3d%ny, 'y' )
2906	CALL get_dimension_length( id_dynamic, init_3d%nyv, 'yv' )
2907
2908	!
2909	!-- Check for correct horizontal and vertical dimension. Please note,
2910	!-- checks are performed directly here and not called from
2911	!-- check_parameters as some varialbes are still not allocated there.
2912	!-- Moreover, please note, u- and v-grid has 1 grid point less on
2913	!-- Inifor grid.
2914	IF ( init_3d%nx-1 /= nx .OR. init_3d%nxu-1 /= nx - 1 .OR. &
2915	init_3d%ny-1 /= ny .OR. init_3d%nyv-1 /= ny - 1 ) THEN
2916	message_string = 'Number of inifor horizontal grid points '// &
2917	'does not match the number of numeric grid '// &
2918	'points.'
2919	CALL message( 'netcdf_data_input_mod', 'PA0543', 1, 2, 0, 6, 0 )
2920	ENDIF
2921
2922	IF ( init_3d%nzu /= nz ) THEN
2923	message_string = 'Number of inifor vertical grid points ' // &
2924	'does not match the number of numeric grid '// &
2925	'points.'
2926	CALL message( 'netcdf_data_input_mod', 'PA0543', 1, 2, 0, 6, 0 )
2927	ENDIF
2928	!
2929	!-- Read vertical dimensions. Later, these are required for eventual
2930	!-- inter- and extrapolations of the initialization data.
2931	IF ( check_existence( var_names, 'z' ) ) THEN
2932	ALLOCATE( init_3d%zu_atmos(1:init_3d%nzu) )
2933	CALL get_variable( id_dynamic, 'z', init_3d%zu_atmos )
2934	ENDIF
2935	IF ( check_existence( var_names, 'zw' ) ) THEN
2936	ALLOCATE( init_3d%zw_atmos(1:init_3d%nzw) )
2937	CALL get_variable( id_dynamic, 'zw', init_3d%zw_atmos )
2938	ENDIF
2939	!
2940	!-- Check for consistency between vertical coordinates in dynamic
2941	!-- driver and numeric grid.
2942	!-- Please note, depending on compiler options both may be
2943	!-- equal up to a certain threshold, and differences between
2944	!-- the numeric grid and vertical coordinate in the driver can built-
2945	!-- up to 10E-1-10E-0 m. For this reason, the check is performed not
2946	!-- for exactly matching values.
2947	IF ( ANY( ABS( zu(1:nzt) - init_3d%zu_atmos(1:init_3d%nzu) ) &
2948	> 10E-1 ) .OR. &
2949	ANY( ABS( zw(1:nzt-1) - init_3d%zw_atmos(1:init_3d%nzw) ) &
2950	> 10E-1 ) ) THEN
2951	message_string = 'Vertical grid in dynamic driver does not '// &
2952	'match the numeric grid.'
2953	CALL message( 'netcdf_data_input_mod', 'PA0543', 1, 2, 0, 6, 0 )
2954	ENDIF
2955	!
2956	!-- Read initial geostrophic wind components at
2957	!-- t = 0 (index 1 in file).
2958	IF ( check_existence( var_names, 'ls_forcing_ug' ) ) THEN
2959	ALLOCATE( init_3d%ug_init(nzb:nzt+1) )
2960	init_3d%ug_init = 0.0_wp
2961
2962	CALL get_variable_pr( id_dynamic, 'ls_forcing_ug', 1, &
2963	init_3d%ug_init(1:nzt) )
2964	!
2965	!-- Set top-boundary condition (Neumann)
2966	init_3d%ug_init(nzt+1) = init_3d%ug_init(nzt)
2967
2968	init_3d%from_file_ug = .TRUE.
2969	ELSE
2970	init_3d%from_file_ug = .FALSE.
2971	ENDIF
2972	IF ( check_existence( var_names, 'ls_forcing_vg' ) ) THEN
2973	ALLOCATE( init_3d%vg_init(nzb:nzt+1) )
2974	init_3d%vg_init = 0.0_wp
2975
2976	CALL get_variable_pr( id_dynamic, 'ls_forcing_vg', 1, &
2977	init_3d%vg_init(1:nzt) )
2978	!
2979	!-- Set top-boundary condition (Neumann)
2980	init_3d%vg_init(nzt+1) = init_3d%vg_init(nzt)
2981
2982	init_3d%from_file_vg = .TRUE.
2983	ELSE
2984	init_3d%from_file_vg = .FALSE.
2985	ENDIF
2986	!
2987	!-- Read inital 3D data of u, v, w, pt and q,
2988	!-- derived from COSMO model. Read PE-wise yz-slices.
2989	!-- Please note, the u-, v- and w-component are defined on different
2990	!-- grids with one element less in the x-, y-,
2991	!-- and z-direction, respectively. Hence, reading is subdivided
2992	!-- into separate loops.
2993	!-- Read u-component
2994	IF ( check_existence( var_names, 'init_atmosphere_u' ) ) THEN
2995	!
2996	!-- Read attributes for the fill value and level-of-detail
2997	CALL get_attribute( id_dynamic, char_fill, init_3d%fill_u, &
2998	.FALSE., 'init_atmosphere_u' )
2999	CALL get_attribute( id_dynamic, char_lod, init_3d%lod_u, &
3000	.FALSE., 'init_atmosphere_u' )
3001	!
3002	!-- level-of-detail 1 - read initialization profile
3003	IF ( init_3d%lod_u == 1 ) THEN
3004	ALLOCATE( init_3d%u_init(nzb:nzt+1) )
3005	init_3d%u_init = 0.0_wp
3006
3007	CALL get_variable( id_dynamic, 'init_atmosphere_u', &
3008	init_3d%u_init(nzb+1:nzt) )
3009	!
3010	!-- Set top-boundary condition (Neumann)
3011	init_3d%u_init(nzt+1) = init_3d%u_init(nzt)
3012	!
3013	!-- level-of-detail 2 - read 3D initialization data
3014	ELSEIF ( init_3d%lod_u == 2 ) THEN
3015	CALL get_variable( id_dynamic, 'init_atmosphere_u', &
3016	u(nzb+1:nzt,nys:nyn,nxlu:nxr), &
3017	nxlu, nys+1, nzb+1, &
3018	nxr-nxlu+1, nyn-nys+1, init_3d%nzu, &
3019	dynamic_3d )
3020	!
3021	!-- Set value at leftmost model grid point nxl = 0. This is because
3022	!-- Inifor provides data only from 1:nx-1 since it assumes non-cyclic
3023	!-- conditions.
3024	IF ( nxl == 0 ) &
3025	u(nzb+1:nzt,nys:nyn,nxl) = u(nzb+1:nzt,nys:nyn,nxlu)
3026	!
3027	!-- Set bottom and top-boundary
3028	u(nzb,:,:) = u(nzb+1,:,:)
3029	u(nzt+1,:,:) = u(nzt,:,:)
3030
3031	ENDIF
3032	init_3d%from_file_u = .TRUE.
3033	ELSE
3034	message_string = 'Missing initial data for u-component'
3035	CALL message( 'netcdf_data_input_mod', 'PA0544', 1, 2, 0, 6, 0 )
3036	ENDIF
3037	!
3038	!-- Read v-component
3039	IF ( check_existence( var_names, 'init_atmosphere_v' ) ) THEN
3040	!
3041	!-- Read attributes for the fill value and level-of-detail
3042	CALL get_attribute( id_dynamic, char_fill, init_3d%fill_v, &
3043	.FALSE., 'init_atmosphere_v' )
3044	CALL get_attribute( id_dynamic, char_lod, init_3d%lod_v, &
3045	.FALSE., 'init_atmosphere_v' )
3046	!
3047	!-- level-of-detail 1 - read initialization profile
3048	IF ( init_3d%lod_v == 1 ) THEN
3049	ALLOCATE( init_3d%v_init(nzb:nzt+1) )
3050	init_3d%v_init = 0.0_wp
3051
3052	CALL get_variable( id_dynamic, 'init_atmosphere_v', &
3053	init_3d%v_init(nzb+1:nzt) )
3054	!
3055	!-- Set top-boundary condition (Neumann)
3056	init_3d%v_init(nzt+1) = init_3d%v_init(nzt)
3057	!
3058	!-- level-of-detail 2 - read 3D initialization data
3059	ELSEIF ( init_3d%lod_v == 2 ) THEN
3060
3061	CALL get_variable( id_dynamic, 'init_atmosphere_v', &
3062	v(nzb+1:nzt,nysv:nyn,nxl:nxr), &
3063	nxl+1, nysv, nzb+1, &
3064	nxr-nxl+1, nyn-nysv+1, init_3d%nzu, &
3065	dynamic_3d )
3066	!
3067	!-- Set value at southmost model grid point nys = 0. This is because
3068	!-- Inifor provides data only from 1:ny-1 since it assumes non-cyclic
3069	!-- conditions.
3070	IF ( nys == 0 ) &
3071	v(nzb+1:nzt,nys,nxl:nxr) = v(nzb+1:nzt,nysv,nxl:nxr)
3072	!
3073	!-- Set bottom and top-boundary
3074	v(nzb,:,:) = v(nzb+1,:,:)
3075	v(nzt+1,:,:) = v(nzt,:,:)
3076
3077	ENDIF
3078	init_3d%from_file_v = .TRUE.
3079	ELSE
3080	message_string = 'Missing initial data for v-component'
3081	CALL message( 'netcdf_data_input_mod', 'PA0544', 1, 2, 0, 6, 0 )
3082	ENDIF
3083	!
3084	!-- Read w-component
3085	IF ( check_existence( var_names, 'init_atmosphere_w' ) ) THEN
3086	!
3087	!-- Read attributes for the fill value and level-of-detail
3088	CALL get_attribute( id_dynamic, char_fill, init_3d%fill_w, &
3089	.FALSE., 'init_atmosphere_w' )
3090	CALL get_attribute( id_dynamic, char_lod, init_3d%lod_w, &
3091	.FALSE., 'init_atmosphere_w' )
3092	!
3093	!-- level-of-detail 1 - read initialization profile
3094	IF ( init_3d%lod_w == 1 ) THEN
3095	ALLOCATE( init_3d%w_init(nzb:nzt+1) )
3096	init_3d%w_init = 0.0_wp
3097
3098	CALL get_variable( id_dynamic, 'init_atmosphere_w', &
3099	init_3d%w_init(nzb+1:nzt-1) )
3100	!
3101	!-- Set top-boundary condition (Neumann)
3102	init_3d%w_init(nzt:nzt+1) = init_3d%w_init(nzt-1)
3103	!
3104	!-- level-of-detail 2 - read 3D initialization data
3105	ELSEIF ( init_3d%lod_w == 2 ) THEN
3106
3107	CALL get_variable( id_dynamic, 'init_atmosphere_w', &
3108	w(nzb+1:nzt-1,nys:nyn,nxl:nxr), &
3109	nxl+1, nys+1, nzb+1, &
3110	nxr-nxl+1, nyn-nys+1, init_3d%nzw, &
3111	dynamic_3d )
3112	!
3113	!-- Set bottom and top-boundary
3114	w(nzb,:,:) = 0.0_wp
3115	w(nzt,:,:) = w(nzt-1,:,:)
3116	w(nzt+1,:,:) = w(nzt-1,:,:)
3117
3118	ENDIF
3119	init_3d%from_file_w = .TRUE.
3120	ELSE
3121	message_string = 'Missing initial data for w-component'
3122	CALL message( 'netcdf_data_input_mod', 'PA0544', 1, 2, 0, 6, 0 )
3123	ENDIF
3124	!
3125	!-- Read potential temperature
3126	IF ( .NOT. neutral ) THEN
3127	IF ( check_existence( var_names, 'init_atmosphere_pt' ) ) THEN
3128	!
3129	!-- Read attributes for the fill value and level-of-detail
3130	CALL get_attribute( id_dynamic, char_fill, init_3d%fill_pt, &
3131	.FALSE., 'init_atmosphere_pt' )
3132	CALL get_attribute( id_dynamic, char_lod, init_3d%lod_pt, &
3133	.FALSE., 'init_atmosphere_pt' )
3134	!
3135	!-- level-of-detail 1 - read initialization profile
3136	IF ( init_3d%lod_pt == 1 ) THEN
3137	ALLOCATE( init_3d%pt_init(nzb:nzt+1) )
3138
3139	CALL get_variable( id_dynamic, 'init_atmosphere_pt', &
3140	init_3d%pt_init(nzb+1:nzt) )
3141	!
3142	!-- Set Neumann top and surface boundary condition for initial
3143	!-- profil
3144	init_3d%pt_init(nzb) = init_3d%pt_init(nzb+1)
3145	init_3d%pt_init(nzt+1) = init_3d%pt_init(nzt)
3146	!
3147	!-- level-of-detail 2 - read 3D initialization data
3148	ELSEIF ( init_3d%lod_pt == 2 ) THEN
3149
3150	CALL get_variable( id_dynamic, 'init_atmosphere_pt', &
3151	pt(nzb+1:nzt,nys:nyn,nxl:nxr), &
3152	nxl+1, nys+1, nzb+1, &
3153	nxr-nxl+1, nyn-nys+1, init_3d%nzu, &
3154	dynamic_3d )
3155
3156	!
3157	!-- Set bottom and top-boundary
3158	pt(nzb,:,:) = pt(nzb+1,:,:)
3159	pt(nzt+1,:,:) = pt(nzt,:,:)
3160
3161	ENDIF
3162	init_3d%from_file_pt = .TRUE.
3163	ELSE
3164	message_string = 'Missing initial data for ' // &
3165	'potential temperature'
3166	CALL message( 'netcdf_data_input_mod', 'PA0544', 1, 2, 0, 6, 0 )
3167	ENDIF
3168	ENDIF
3169	!
3170	!-- Read mixing ratio
3171	IF ( humidity ) THEN
3172	IF ( check_existence( var_names, 'init_atmosphere_qv' ) ) THEN
3173	!
3174	!-- Read attributes for the fill value and level-of-detail
3175	CALL get_attribute( id_dynamic, char_fill, init_3d%fill_q, &
3176	.FALSE., 'init_atmosphere_qv' )
3177	CALL get_attribute( id_dynamic, char_lod, init_3d%lod_q, &
3178	.FALSE., 'init_atmosphere_qv' )
3179	!
3180	!-- level-of-detail 1 - read initialization profile
3181	IF ( init_3d%lod_q == 1 ) THEN
3182	ALLOCATE( init_3d%q_init(nzb:nzt+1) )
3183
3184	CALL get_variable( id_dynamic, 'init_atmosphere_qv', &
3185	init_3d%q_init(nzb+1:nzt) )
3186	!
3187	!-- Set bottom and top boundary condition (Neumann)
3188	init_3d%q_init(nzb) = init_3d%q_init(nzb+1)
3189	init_3d%q_init(nzt+1) = init_3d%q_init(nzt)
3190	!
3191	!-- level-of-detail 2 - read 3D initialization data
3192	ELSEIF ( init_3d%lod_q == 2 ) THEN
3193
3194	CALL get_variable( id_dynamic, 'init_atmosphere_qv', &
3195	q(nzb+1:nzt,nys:nyn,nxl:nxr), &
3196	nxl+1, nys+1, nzb+1, &
3197	nxr-nxl+1, nyn-nys+1, init_3d%nzu, &
3198	dynamic_3d )
3199
3200	!
3201	!-- Set bottom and top-boundary
3202	q(nzb,:,:) = q(nzb+1,:,:)
3203	q(nzt+1,:,:) = q(nzt,:,:)
3204
3205	ENDIF
3206	init_3d%from_file_q = .TRUE.
3207	ELSE
3208	message_string = 'Missing initial data for ' // &
3209	'mixing ratio'
3210	CALL message( 'netcdf_data_input_mod', 'PA0544', 1, 2, 0, 6, 0 )
3211	ENDIF
3212	ENDIF
3213	!
3214	!-- Read chemistry variables.
3215	!-- Please note, for the moment, only LOD=1 is allowed
3216	IF ( air_chemistry ) THEN
3217	!
3218	!-- Allocate chemistry input profiles, as well as arrays for fill values
3219	!-- and LOD's.
3220	ALLOCATE( init_3d%chem_init(nzb:nzt+1, &
3221	1:UBOUND(init_3d%var_names_chem, 1 )) )
3222	ALLOCATE( init_3d%fill_chem(1:UBOUND(init_3d%var_names_chem, 1)) )
3223	ALLOCATE( init_3d%lod_chem(1:UBOUND(init_3d%var_names_chem, 1)) )
3224
3225	DO n = 1, UBOUND(init_3d%var_names_chem, 1)
3226	IF ( check_existence( var_names, &
3227	TRIM( init_3d%var_names_chem(n) ) ) ) THEN
3228	!
3229	!-- Read attributes for the fill value and level-of-detail
3230	CALL get_attribute( id_dynamic, char_fill, &
3231	init_3d%fill_chem(n), &
3232	.FALSE., &
3233	TRIM( init_3d%var_names_chem(n) ) )
3234	CALL get_attribute( id_dynamic, char_lod, &
3235	init_3d%lod_chem(n), &
3236	.FALSE., &
3237	TRIM( init_3d%var_names_chem(n) ) )
3238	!
3239	!-- Give message that only LOD=1 is allowed.
3240	IF ( init_3d%lod_chem(n) /= 1 ) THEN
3241	message_string = 'For chemistry variables only LOD=1 is ' //&
3242	'allowed.'
3243	CALL message( 'netcdf_data_input_mod', 'PA0586', &
3244	1, 2, 0, 6, 0 )
3245	ENDIF
3246	!
3247	!-- level-of-detail 1 - read initialization profile
3248	CALL get_variable( id_dynamic, &
3249	TRIM( init_3d%var_names_chem(n) ), &
3250	init_3d%chem_init(nzb+1:nzt,n) )
3251	!
3252	!-- Set bottom and top boundary condition (Neumann)
3253	init_3d%chem_init(nzb,n) = init_3d%chem_init(nzb+1,n)
3254	init_3d%chem_init(nzt+1,n) = init_3d%chem_init(nzt,n)
3255
3256	init_3d%from_file_chem(n) = .TRUE.
3257	ENDIF
3258	ENDDO
3259	ENDIF
3260	!
3261	!-- Close input file
3262	CALL close_input_file( id_dynamic )
3263	#endif
3264	!
3265	!-- End of CPU measurement
3266	CALL cpu_log( log_point_s(85), 'NetCDF input init', 'stop' )
3267	!
3268	!-- Finally, check if the input data has any fill values. Please note,
3269	!-- checks depend on the LOD of the input data.
3270	IF ( init_3d%from_file_u ) THEN
3271	check_passed = .TRUE.
3272	IF ( init_3d%lod_u == 1 ) THEN
3273	IF ( ANY( init_3d%u_init(nzb+1:nzt+1) == init_3d%fill_u ) ) &
3274	check_passed = .FALSE.
3275	ELSEIF ( init_3d%lod_u == 2 ) THEN
3276	IF ( ANY( u(nzb+1:nzt+1,nys:nyn,nxlu:nxr) == init_3d%fill_u ) ) &
3277	check_passed = .FALSE.
3278	ENDIF
3279	IF ( .NOT. check_passed ) THEN
3280	message_string = 'NetCDF input for init_atmosphere_u must ' // &
3281	'not contain any _FillValues'
3282	CALL message( 'netcdf_data_input_mod', 'PA0545', 2, 2, 0, 6, 0 )
3283	ENDIF
3284	ENDIF
3285
3286	IF ( init_3d%from_file_v ) THEN
3287	check_passed = .TRUE.
3288	IF ( init_3d%lod_v == 1 ) THEN
3289	IF ( ANY( init_3d%v_init(nzb+1:nzt+1) == init_3d%fill_v ) ) &
3290	check_passed = .FALSE.
3291	ELSEIF ( init_3d%lod_v == 2 ) THEN
3292	IF ( ANY( v(nzb+1:nzt+1,nysv:nyn,nxl:nxr) == init_3d%fill_v ) ) &
3293	check_passed = .FALSE.
3294	ENDIF
3295	IF ( .NOT. check_passed ) THEN
3296	message_string = 'NetCDF input for init_atmosphere_v must ' // &
3297	'not contain any _FillValues'
3298	CALL message( 'netcdf_data_input_mod', 'PA0545', 2, 2, 0, 6, 0 )
3299	ENDIF
3300	ENDIF
3301
3302	IF ( init_3d%from_file_w ) THEN
3303	check_passed = .TRUE.
3304	IF ( init_3d%lod_w == 1 ) THEN
3305	IF ( ANY( init_3d%w_init(nzb+1:nzt) == init_3d%fill_w ) ) &
3306	check_passed = .FALSE.
3307	ELSEIF ( init_3d%lod_w == 2 ) THEN
3308	IF ( ANY( w(nzb+1:nzt,nys:nyn,nxl:nxr) == init_3d%fill_w ) ) &
3309	check_passed = .FALSE.
3310	ENDIF
3311	IF ( .NOT. check_passed ) THEN
3312	message_string = 'NetCDF input for init_atmosphere_w must ' // &
3313	'not contain any _FillValues'
3314	CALL message( 'netcdf_data_input_mod', 'PA0545', 2, 2, 0, 6, 0 )
3315	ENDIF
3316	ENDIF
3317
3318	IF ( init_3d%from_file_pt ) THEN
3319	check_passed = .TRUE.
3320	IF ( init_3d%lod_pt == 1 ) THEN
3321	IF ( ANY( init_3d%pt_init(nzb+1:nzt+1) == init_3d%fill_pt ) ) &
3322	check_passed = .FALSE.
3323	ELSEIF ( init_3d%lod_pt == 2 ) THEN
3324	IF ( ANY( pt(nzb+1:nzt+1,nys:nyn,nxl:nxr) == init_3d%fill_pt ) ) &
3325	check_passed = .FALSE.
3326	ENDIF
3327	IF ( .NOT. check_passed ) THEN
3328	message_string = 'NetCDF input for init_atmosphere_pt must ' // &
3329	'not contain any _FillValues'
3330	CALL message( 'netcdf_data_input_mod', 'PA0545', 2, 2, 0, 6, 0 )
3331	ENDIF
3332	ENDIF
3333
3334	IF ( init_3d%from_file_q ) THEN
3335	check_passed = .TRUE.
3336	IF ( init_3d%lod_q == 1 ) THEN
3337	IF ( ANY( init_3d%q_init(nzb+1:nzt+1) == init_3d%fill_q ) ) &
3338	check_passed = .FALSE.
3339	ELSEIF ( init_3d%lod_q == 2 ) THEN
3340	IF ( ANY( q(nzb+1:nzt+1,nys:nyn,nxl:nxr) == init_3d%fill_q ) ) &
3341	check_passed = .FALSE.
3342	ENDIF
3343	IF ( .NOT. check_passed ) THEN
3344	message_string = 'NetCDF input for init_atmosphere_q must ' // &
3345	'not contain any _FillValues'
3346	CALL message( 'netcdf_data_input_mod', 'PA0545', 2, 2, 0, 6, 0 )
3347	ENDIF
3348	ENDIF
3349	!
3350	!-- Workaround for cyclic conditions. Please see above for further explanation.
3351	IF ( bc_lr_cyc .AND. nxl == 0 ) nxlu = nxl
3352	IF ( bc_ns_cyc .AND. nys == 0 ) nysv = nys
3353
3354	END SUBROUTINE netcdf_data_input_init_3d
3355
3356	!------------------------------------------------------------------------------!
3357	! Description:
3358	! ------------
3359	!> Reads initialization data of u, v, w, pt, q, geostrophic wind components,
3360	!> as well as soil moisture and soil temperature, derived from larger-scale
3361	!> model (COSMO) by Inifor.
3362	!------------------------------------------------------------------------------!
3363	SUBROUTINE netcdf_data_input_init_lsm
3364
3365	USE control_parameters, &
3366	ONLY: message_string
3367
3368	USE indices, &
3369	ONLY: nx, nxl, nxr, ny, nyn, nys
3370
3371	IMPLICIT NONE
3372
3373	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names !< string containing all variables on file
3374
3375	INTEGER(iwp) :: id_dynamic !< NetCDF id of dynamic input file
3376	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
3377
3378	!
3379	!-- Skip routine if no input file with dynamic input data is available.
3380	IF ( .NOT. input_pids_dynamic ) RETURN
3381	!
3382	!-- CPU measurement
3383	CALL cpu_log( log_point_s(85), 'NetCDF input init', 'start' )
3384
3385	#if defined ( __netcdf )
3386	!
3387	!-- Open file in read-only mode
3388	CALL open_read_file( TRIM( input_file_dynamic ) // &
3389	TRIM( coupling_char ), id_dynamic )
3390
3391	!
3392	!-- At first, inquire all variable names.
3393	CALL inquire_num_variables( id_dynamic, num_vars )
3394	!
3395	!-- Allocate memory to store variable names.
3396	ALLOCATE( var_names(1:num_vars) )
3397	CALL inquire_variable_names( id_dynamic, var_names )
3398	!
3399	!-- Read vertical dimension for soil depth.
3400	IF ( check_existence( var_names, 'zsoil' ) ) &
3401	CALL get_dimension_length( id_dynamic, init_3d%nzs, 'zsoil' )
3402	!
3403	!-- Read also the horizontal dimensions required for soil initialization.
3404	!-- Please note, in case of non-nested runs or in case of root domain,
3405	!-- these data is already available, but will be read again for the sake
3406	!-- of clearness.
3407	CALL get_dimension_length( id_dynamic, init_3d%nx, 'x' )
3408	CALL get_dimension_length( id_dynamic, init_3d%ny, 'y' )
3409	!
3410	!-- Check for correct horizontal and vertical dimension. Please note,
3411	!-- in case of non-nested runs or in case of root domain, these checks
3412	!-- are already performed
3413	IF ( init_3d%nx-1 /= nx .OR. init_3d%ny-1 /= ny ) THEN
3414	message_string = 'Number of inifor horizontal grid points '// &
3415	'does not match the number of numeric grid points.'
3416	CALL message( 'netcdf_data_input_mod', 'PA0543', 1, 2, 0, 6, 0 )
3417	ENDIF
3418	!
3419	!-- Read vertical dimensions. Later, these are required for eventual
3420	!-- inter- and extrapolations of the initialization data.
3421	IF ( check_existence( var_names, 'zsoil' ) ) THEN
3422	ALLOCATE( init_3d%z_soil(1:init_3d%nzs) )
3423	CALL get_variable( id_dynamic, 'zsoil', init_3d%z_soil )
3424	ENDIF
3425	!
3426	!-- Read initial data for soil moisture
3427	IF ( check_existence( var_names, 'init_soil_m' ) ) THEN
3428	!
3429	!-- Read attributes for the fill value and level-of-detail
3430	CALL get_attribute( id_dynamic, char_fill, &
3431	init_3d%fill_msoil, &
3432	.FALSE., 'init_soil_m' )
3433	CALL get_attribute( id_dynamic, char_lod, &
3434	init_3d%lod_msoil, &
3435	.FALSE., 'init_soil_m' )
3436	!
3437	!-- level-of-detail 1 - read initialization profile
3438	IF ( init_3d%lod_msoil == 1 ) THEN
3439	ALLOCATE( init_3d%msoil_1d(0:init_3d%nzs-1) )
3440
3441	CALL get_variable( id_dynamic, 'init_soil_m', &
3442	init_3d%msoil_1d(0:init_3d%nzs-1) )
3443	!
3444	!-- level-of-detail 2 - read 3D initialization data
3445	ELSEIF ( init_3d%lod_msoil == 2 ) THEN
3446	ALLOCATE ( init_3d%msoil_3d(0:init_3d%nzs-1,nys:nyn,nxl:nxr) )
3447
3448	CALL get_variable( id_dynamic, 'init_soil_m', &
3449	init_3d%msoil_3d(0:init_3d%nzs-1,nys:nyn,nxl:nxr),&
3450	nxl, nxr, nys, nyn, 0, init_3d%nzs-1 )
3451
3452	ENDIF
3453	init_3d%from_file_msoil = .TRUE.
3454	ENDIF
3455	!
3456	!-- Read soil temperature
3457	IF ( check_existence( var_names, 'init_soil_t' ) ) THEN
3458	!
3459	!-- Read attributes for the fill value and level-of-detail
3460	CALL get_attribute( id_dynamic, char_fill, &
3461	init_3d%fill_tsoil, &
3462	.FALSE., 'init_soil_t' )
3463	CALL get_attribute( id_dynamic, char_lod, &
3464	init_3d%lod_tsoil, &
3465	.FALSE., 'init_soil_t' )
3466	!
3467	!-- level-of-detail 1 - read initialization profile
3468	IF ( init_3d%lod_tsoil == 1 ) THEN
3469	ALLOCATE( init_3d%tsoil_1d(0:init_3d%nzs-1) )
3470
3471	CALL get_variable( id_dynamic, 'init_soil_t', &
3472	init_3d%tsoil_1d(0:init_3d%nzs-1) )
3473
3474	!
3475	!-- level-of-detail 2 - read 3D initialization data
3476	ELSEIF ( init_3d%lod_tsoil == 2 ) THEN
3477	ALLOCATE ( init_3d%tsoil_3d(0:init_3d%nzs-1,nys:nyn,nxl:nxr) )
3478
3479	CALL get_variable( id_dynamic, 'init_soil_t', &
3480	init_3d%tsoil_3d(0:init_3d%nzs-1,nys:nyn,nxl:nxr),&
3481	nxl, nxr, nys, nyn, 0, init_3d%nzs-1 )
3482	ENDIF
3483	init_3d%from_file_tsoil = .TRUE.
3484	ENDIF
3485	!
3486	!-- Close input file
3487	CALL close_input_file( id_dynamic )
3488	#endif
3489	!
3490	!-- End of CPU measurement
3491	CALL cpu_log( log_point_s(85), 'NetCDF input init', 'stop' )
3492
3493	END SUBROUTINE netcdf_data_input_init_lsm
3494
3495	!------------------------------------------------------------------------------!
3496	! Description:
3497	! ------------
3498	!> Checks input file for consistency and minimum requirements.
3499	!------------------------------------------------------------------------------!
3500	SUBROUTINE netcdf_data_input_check_dynamic
3501
3502	USE control_parameters, &
3503	ONLY: initializing_actions, message_string
3504
3505	IMPLICIT NONE
3506	!
3507	!-- Dynamic input file must also be present if initialization via inifor is
3508	!-- prescribed.
3509	IF ( .NOT. input_pids_dynamic .AND. &
3510	INDEX( initializing_actions, 'inifor' ) /= 0 ) THEN
3511	message_string = 'initializing_actions = inifor requires dynamic ' //&
3512	'input file ' // TRIM( input_file_dynamic ) // &
3513	TRIM( coupling_char )
3514	CALL message( 'netcdf_data_input_mod', 'PA0547', 1, 2, 0, 6, 0 )
3515	ENDIF
3516
3517	END SUBROUTINE netcdf_data_input_check_dynamic
3518
3519	!------------------------------------------------------------------------------!
3520	! Description:
3521	! ------------
3522	!> Checks input file for consistency and minimum requirements.
3523	!------------------------------------------------------------------------------!
3524	SUBROUTINE netcdf_data_input_check_static
3525
3526	USE arrays_3d, &
3527	ONLY: zu
3528
3529	USE control_parameters, &
3530	ONLY: land_surface, message_string, urban_surface
3531
3532	USE indices, &
3533	ONLY: nxl, nxr, nyn, nys, wall_flags_0
3534
3535	IMPLICIT NONE
3536
3537	INTEGER(iwp) :: i !< loop index along x-direction
3538	INTEGER(iwp) :: j !< loop index along y-direction
3539	INTEGER(iwp) :: n_surf !< number of different surface types at given location
3540
3541	LOGICAL :: check_passed !< flag indicating if a check passed
3542
3543	!
3544	!-- Return if no static input file is available
3545	IF ( .NOT. input_pids_static ) RETURN
3546	!
3547	!-- Check for correct dimension of surface_fractions, should run from 0-2.
3548	IF ( surface_fraction_f%from_file ) THEN
3549	IF ( surface_fraction_f%nf-1 > 2 ) THEN
3550	message_string = 'nsurface_fraction must not be larger than 3.'
3551	CALL message( 'netcdf_data_input_mod', 'PA0580', 1, 2, 0, 6, 0 )
3552	ENDIF
3553	ENDIF
3554	!
3555	!-- Check orography for fill-values. For the moment, give an error message.
3556	!-- More advanced methods, e.g. a nearest neighbor algorithm as used in GIS
3557	!-- systems might be implemented later.
3558	!-- Please note, if no terrain height is provided, it is set to 0.
3559	IF ( ANY( terrain_height_f%var == terrain_height_f%fill ) ) THEN
3560	message_string = 'NetCDF variable zt is not ' // &
3561	'allowed to have missing data'
3562	CALL message( 'netcdf_data_input_mod', 'PA0550', 2, 2, myid, 6, 0 )
3563	ENDIF
3564	!
3565	!-- Check for negative terrain heights
3566	IF ( ANY( terrain_height_f%var < 0.0_wp ) ) THEN
3567	message_string = 'NetCDF variable zt is not ' // &
3568	'allowed to have negative values'
3569	CALL message( 'netcdf_data_input_mod', 'PA0551', 2, 2, myid, 6, 0 )
3570	ENDIF
3571	!
3572	!-- If 3D buildings are read, check if building information is consistent
3573	!-- to numeric grid.
3574	IF ( buildings_f%from_file ) THEN
3575	IF ( buildings_f%lod == 2 ) THEN
3576	IF ( buildings_f%nz > SIZE( zu ) ) THEN
3577	message_string = 'Reading 3D building data - too much ' // &
3578	'data points along the vertical coordinate.'
3579	CALL message( 'netcdf_data_input_mod', 'PA0552', 2, 2, 0, 6, 0 )
3580	ENDIF
3581
3582	IF ( ANY( ABS( buildings_f%z(0:buildings_f%nz-1) - &
3583	zu(0:buildings_f%nz-1) ) > 1E-6_wp ) ) THEN
3584	message_string = 'Reading 3D building data - vertical ' // &
3585	'coordinate do not match numeric grid.'
3586	CALL message( 'netcdf_data_input_mod', 'PA0553', 2, 2, myid, 6, 0 )
3587	ENDIF
3588	ENDIF
3589	ENDIF
3590
3591	!
3592	!-- Skip further checks concerning buildings and natural surface properties
3593	!-- if no urban surface and land surface model are applied.
3594	IF ( .NOT. land_surface .AND. .NOT. urban_surface ) RETURN
3595	!
3596	!-- Check for minimum requirement of surface-classification data in case
3597	!-- static input file is used.
3598	IF ( ( .NOT. vegetation_type_f%from_file .OR. &
3599	.NOT. pavement_type_f%from_file .OR. &
3600	.NOT. water_type_f%from_file .OR. &
3601	.NOT. soil_type_f%from_file ) .OR. &
3602	( urban_surface .AND. .NOT. building_type_f%from_file ) ) THEN
3603	message_string = 'Minimum requirement for surface classification ' //&
3604	'is not fulfilled. At least ' // &
3605	'vegetation_type, pavement_type, ' // &
3606	'soil_type and water_type are '// &
3607	'required. If urban-surface model is applied, ' // &
3608	'also building_type is required'
3609	CALL message( 'netcdf_data_input_mod', 'PA0554', 1, 2, 0, 6, 0 )
3610	ENDIF
3611	!
3612	!-- Check for general availability of input variables.
3613	!-- If vegetation_type is 0 at any location, vegetation_pars as well as
3614	!-- root_area_dens_s are required.
3615	IF ( vegetation_type_f%from_file ) THEN
3616	IF ( ANY( vegetation_type_f%var == 0 ) ) THEN
3617	IF ( .NOT. vegetation_pars_f%from_file ) THEN
3618	message_string = 'If vegetation_type = 0 at any location, ' // &
3619	'vegetation_pars is required'
3620	CALL message( 'netcdf_data_input_mod', 'PA0555', 2, 2, -1, 6, 0 )
3621	ENDIF
3622	IF ( .NOT. root_area_density_lsm_f%from_file ) THEN
3623	message_string = 'If vegetation_type = 0 at any location, ' // &
3624	'root_area_dens_s is required'
3625	CALL message( 'netcdf_data_input_mod', 'PA0556', 2, 2, myid, 6, 0 )
3626	ENDIF
3627	ENDIF
3628	ENDIF
3629	!
3630	!-- If soil_type is zero at any location, soil_pars is required.
3631	IF ( soil_type_f%from_file ) THEN
3632	check_passed = .TRUE.
3633	IF ( ALLOCATED( soil_type_f%var_2d ) ) THEN
3634	IF ( ANY( soil_type_f%var_2d == 0 ) ) THEN
3635	IF ( .NOT. soil_pars_f%from_file ) check_passed = .FALSE.
3636	ENDIF
3637	ELSE
3638	IF ( ANY( soil_type_f%var_3d == 0 ) ) THEN
3639	IF ( .NOT. soil_pars_f%from_file ) check_passed = .FALSE.
3640	ENDIF
3641	ENDIF
3642	IF ( .NOT. check_passed ) THEN
3643	message_string = 'If soil_type = 0 at any location, ' // &
3644	'soil_pars is required'
3645	CALL message( 'netcdf_data_input_mod', 'PA0557', 2, 2, myid, 6, 0 )
3646	ENDIF
3647	ENDIF
3648	!
3649	!-- Buildings require a type in case of urban-surface model.
3650	IF ( buildings_f%from_file .AND. .NOT. building_type_f%from_file ) THEN
3651	message_string = 'If buildings are provided, also building_type ' // &
3652	'is required'
3653	CALL message( 'netcdf_data_input_mod', 'PA0581', 2, 2, myid, 6, 0 )
3654	ENDIF
3655	!
3656	!-- Buildings require an ID.
3657	IF ( buildings_f%from_file .AND. .NOT. building_id_f%from_file ) THEN
3658	message_string = 'If buildings are provided, also building_id ' // &
3659	'is required'
3660	CALL message( 'netcdf_data_input_mod', 'PA0582', 2, 2, myid, 6, 0 )
3661	ENDIF
3662	!
3663	!-- If building_type is zero at any location, building_pars is required.
3664	IF ( building_type_f%from_file ) THEN
3665	IF ( ANY( building_type_f%var == 0 ) ) THEN
3666	IF ( .NOT. building_pars_f%from_file ) THEN
3667	message_string = 'If building_type = 0 at any location, ' // &
3668	'building_pars is required'
3669	CALL message( 'netcdf_data_input_mod', 'PA0558', 2, 2, myid, 6, 0 )
3670	ENDIF
3671	ENDIF
3672	ENDIF
3673	!
3674	!-- If building_type is provided, also building_id is needed (due to the
3675	!-- filtering algorithm).
3676	IF ( building_type_f%from_file .AND. .NOT. building_id_f%from_file ) &
3677	THEN
3678	message_string = 'If building_type is provided, also building_id '// &
3679	'is required'
3680	CALL message( 'netcdf_data_input_mod', 'PA0519', 2, 2, myid, 6, 0 )
3681	ENDIF
3682	!
3683	!-- If albedo_type is zero at any location, albedo_pars is required.
3684	IF ( albedo_type_f%from_file ) THEN
3685	IF ( ANY( albedo_type_f%var == 0 ) ) THEN
3686	IF ( .NOT. albedo_pars_f%from_file ) THEN
3687	message_string = 'If albedo_type = 0 at any location, ' // &
3688	'albedo_pars is required'
3689	CALL message( 'netcdf_data_input_mod', 'PA0559', 2, 2, myid, 6, 0 )
3690	ENDIF
3691	ENDIF
3692	ENDIF
3693	!
3694	!-- If pavement_type is zero at any location, pavement_pars is required.
3695	IF ( pavement_type_f%from_file ) THEN
3696	IF ( ANY( pavement_type_f%var == 0 ) ) THEN
3697	IF ( .NOT. pavement_pars_f%from_file ) THEN
3698	message_string = 'If pavement_type = 0 at any location, ' // &
3699	'pavement_pars is required'
3700	CALL message( 'netcdf_data_input_mod', 'PA0560', 2, 2, myid, 6, 0 )
3701	ENDIF
3702	ENDIF
3703	ENDIF
3704	!
3705	!-- If pavement_type is zero at any location, also pavement_subsurface_pars
3706	!-- is required.
3707	IF ( pavement_type_f%from_file ) THEN
3708	IF ( ANY( pavement_type_f%var == 0 ) ) THEN
3709	IF ( .NOT. pavement_subsurface_pars_f%from_file ) THEN
3710	message_string = 'If pavement_type = 0 at any location, ' // &
3711	'pavement_subsurface_pars is required'
3712	CALL message( 'netcdf_data_input_mod', 'PA0561', 2, 2, myid, 6, 0 )
3713	ENDIF
3714	ENDIF
3715	ENDIF
3716	!
3717	!-- If water_type is zero at any location, water_pars is required.
3718	IF ( water_type_f%from_file ) THEN
3719	IF ( ANY( water_type_f%var == 0 ) ) THEN
3720	IF ( .NOT. water_pars_f%from_file ) THEN
3721	message_string = 'If water_type = 0 at any location, ' // &
3722	'water_pars is required'
3723	CALL message( 'netcdf_data_input_mod', 'PA0562', 2, 2,myid, 6, 0 )
3724	ENDIF
3725	ENDIF
3726	ENDIF
3727	!
3728	!-- Check for local consistency of the input data.
3729	DO i = nxl, nxr
3730	DO j = nys, nyn
3731	!
3732	!-- For each (y,x)-location at least one of the parameters
3733	!-- vegetation_type, pavement_type, building_type, or water_type
3734	!-- must be set to a nonÂmissing value.
3735	IF ( land_surface .AND. .NOT. urban_surface ) THEN
3736	IF ( vegetation_type_f%var(j,i) == vegetation_type_f%fill .AND.&
3737	pavement_type_f%var(j,i) == pavement_type_f%fill .AND.&
3738	water_type_f%var(j,i) == water_type_f%fill ) THEN
3739	WRITE( message_string, * ) &
3740	'At least one of the parameters '// &
3741	'vegetation_type, pavement_type, ' // &
3742	'or water_type must be set '// &
3743	'to a non-missing value. Grid point: ', j, i
3744	CALL message( 'netcdf_data_input_mod', 'PA0563', 2, 2, myid, 6, 0 )
3745	ENDIF
3746	ELSEIF ( land_surface .AND. urban_surface ) THEN
3747	IF ( vegetation_type_f%var(j,i) == vegetation_type_f%fill .AND.&
3748	pavement_type_f%var(j,i) == pavement_type_f%fill .AND.&
3749	building_type_f%var(j,i) == building_type_f%fill .AND.&
3750	water_type_f%var(j,i) == water_type_f%fill ) THEN
3751	WRITE( message_string, * ) &
3752	'At least one of the parameters '// &
3753	'vegetation_type, pavement_type, ' // &
3754	'building_type, or water_type must be set '// &
3755	'to a non-missing value. Grid point: ', j, i
3756	CALL message( 'netcdf_data_input_mod', 'PA0563', 2, 2, myid, 6, 0 )
3757	ENDIF
3758	ENDIF
3759
3760	!
3761	!-- Note that a soil_type is required for each location (y,x) where
3762	!-- either vegetation_type or pavement_type is a nonÂmissing value.
3763	IF ( ( vegetation_type_f%var(j,i) /= vegetation_type_f%fill .OR. &
3764	pavement_type_f%var(j,i) /= pavement_type_f%fill ) ) THEN
3765	check_passed = .TRUE.
3766	IF ( ALLOCATED( soil_type_f%var_2d ) ) THEN
3767	IF ( soil_type_f%var_2d(j,i) == soil_type_f%fill ) &
3768	check_passed = .FALSE.
3769	ELSE
3770	IF ( ANY( soil_type_f%var_3d(:,j,i) == soil_type_f%fill) ) &
3771	check_passed = .FALSE.
3772	ENDIF
3773
3774	IF ( .NOT. check_passed ) THEN
3775	message_string = 'soil_type is required for each '// &
3776	'location (y,x) where vegetation_type or ' // &
3777	'pavement_type is a non-missing value.'
3778	CALL message( 'netcdf_data_input_mod', 'PA0564', &
3779	2, 2, myid, 6, 0 )
3780	ENDIF
3781	ENDIF
3782	!
3783	!-- Check for consistency of surface fraction. If more than one type
3784	!-- is set, surface fraction need to be given and the sum must not
3785	!-- be larger than 1.
3786	n_surf = 0
3787	IF ( vegetation_type_f%var(j,i) /= vegetation_type_f%fill ) &
3788	n_surf = n_surf + 1
3789	IF ( water_type_f%var(j,i) /= water_type_f%fill ) &
3790	n_surf = n_surf + 1
3791	IF ( pavement_type_f%var(j,i) /= pavement_type_f%fill ) &
3792	n_surf = n_surf + 1
3793
3794	IF ( n_surf > 1 ) THEN
3795	IF ( .NOT. surface_fraction_f%from_file ) THEN
3796	message_string = 'If more than one surface type is ' // &
3797	'given at a location, surface_fraction ' // &
3798	'must be provided.'
3799	CALL message( 'netcdf_data_input_mod', 'PA0565', &
3800	2, 2, myid, 6, 0 )
3801	ELSEIF ( ANY ( surface_fraction_f%frac(:,j,i) == &
3802	surface_fraction_f%fill ) ) THEN
3803	message_string = 'If more than one surface type is ' // &
3804	'given at a location, surface_fraction ' // &
3805	'must be provided.'
3806	CALL message( 'netcdf_data_input_mod', 'PA0565', &
3807	2, 2, myid, 6, 0 )
3808	ENDIF
3809	ENDIF
3810	!
3811	!-- Check for further mismatches. e.g. relative fractions exceed 1 or
3812	!-- vegetation_type is set but surface vegetation fraction is zero,
3813	!-- etc..
3814	IF ( surface_fraction_f%from_file ) THEN
3815	!
3816	!-- Sum of relative fractions must not exceed 1.
3817	IF ( SUM ( surface_fraction_f%frac(0:2,j,i) ) > 1.0_wp ) THEN
3818	message_string = 'surface_fraction must not exceed 1'
3819	CALL message( 'netcdf_data_input_mod', 'PA0566', &
3820	2, 2, myid, 6, 0 )
3821	ENDIF
3822	!
3823	!-- Relative fraction for a type must not be zero at locations where
3824	!-- this type is set.
3825	IF ( &
3826	( vegetation_type_f%var(j,i) /= vegetation_type_f%fill .AND.&
3827	( surface_fraction_f%frac(ind_veg_wall,j,i) == 0.0_wp .OR. &
3828	surface_fraction_f%frac(ind_veg_wall,j,i) == &
3829	surface_fraction_f%fill ) &
3830	) .OR. &
3831	( pavement_type_f%var(j,i) /= pavement_type_f%fill .AND. &
3832	( surface_fraction_f%frac(ind_pav_green,j,i) == 0.0_wp .OR. &
3833	surface_fraction_f%frac(ind_pav_green,j,i) == &
3834	surface_fraction_f%fill ) &
3835	) .OR. &
3836	( water_type_f%var(j,i) /= water_type_f%fill .AND. &
3837	( surface_fraction_f%frac(ind_wat_win,j,i) == 0.0_wp .OR. &
3838	surface_fraction_f%frac(ind_wat_win,j,i) == &
3839	surface_fraction_f%fill ) &
3840	) ) THEN
3841	WRITE( message_string, * ) 'Mismatch in setting of ' // &
3842	'surface_fraction. Vegetation-, pavement-, or '// &
3843	'water surface is given at (i,j) = ( ', i, j, &
3844	' ), but surface fraction is 0 for the given type.'
3845	CALL message( 'netcdf_data_input_mod', 'PA0567', &
3846	2, 2, myid, 6, 0 )
3847	ENDIF
3848	!
3849	!-- Relative fraction for a type must not contain non-zero values
3850	!-- if this type is not set.
3851	IF ( &
3852	( vegetation_type_f%var(j,i) == vegetation_type_f%fill .AND.&
3853	( surface_fraction_f%frac(ind_veg_wall,j,i) /= 0.0_wp .AND. &
3854	surface_fraction_f%frac(ind_veg_wall,j,i) /= &
3855	surface_fraction_f%fill ) &
3856	) .OR. &
3857	( pavement_type_f%var(j,i) == pavement_type_f%fill .AND. &
3858	( surface_fraction_f%frac(ind_pav_green,j,i) /= 0.0_wp .AND. &
3859	surface_fraction_f%frac(ind_pav_green,j,i) /= &
3860	surface_fraction_f%fill ) &
3861	) .OR. &
3862	( water_type_f%var(j,i) == water_type_f%fill .AND. &
3863	( surface_fraction_f%frac(ind_wat_win,j,i) /= 0.0_wp .AND. &
3864	surface_fraction_f%frac(ind_wat_win,j,i) /= &
3865	surface_fraction_f%fill ) &
3866	) ) THEN
3867	WRITE( message_string, * ) 'Mismatch in setting of ' // &
3868	'surface_fraction. Vegetation-, pavement-, or '// &
3869	'water surface is not given at (i,j) = ( ', i, j, &
3870	' ), but surface fraction is not 0 for the ' // &
3871	'given type.'
3872	CALL message( 'netcdf_data_input_mod', 'PA0568', &
3873	2, 2, myid, 6, 0 )
3874	ENDIF
3875	ENDIF
3876	!
3877	!-- Check vegetation_pars. If vegetation_type is 0, all parameters
3878	!-- need to be set, otherwise, single parameters set by
3879	!-- vegetation_type can be overwritten.
3880	IF ( vegetation_type_f%from_file ) THEN
3881	IF ( vegetation_type_f%var(j,i) == 0 ) THEN
3882	IF ( ANY( vegetation_pars_f%pars_xy(:,j,i) == &
3883	vegetation_pars_f%fill ) ) THEN
3884	message_string = 'If vegetation_type(y,x) = 0, all ' // &
3885	'parameters of vegetation_pars at '// &
3886	'this location must be set.'
3887	CALL message( 'netcdf_data_input_mod', 'PA0569', &
3888	2, 2, myid, 6, 0 )
3889	ENDIF
3890	ENDIF
3891	ENDIF
3892	!
3893	!-- Check root distribution. If vegetation_type is 0, all levels must
3894	!-- be set.
3895	IF ( vegetation_type_f%from_file ) THEN
3896	IF ( vegetation_type_f%var(j,i) == 0 ) THEN
3897	IF ( ANY( root_area_density_lsm_f%var(:,j,i) == &
3898	root_area_density_lsm_f%fill ) ) THEN
3899	message_string = 'If vegetation_type(y,x) = 0, all ' // &
3900	'levels of root_area_dens_s ' // &
3901	'must be set at this location.'
3902	CALL message( 'netcdf_data_input_mod', 'PA0570', &
3903	2, 2, myid, 6, 0 )
3904	ENDIF
3905	ENDIF
3906	ENDIF
3907	!
3908	!-- Check soil parameters. If soil_type is 0, all parameters
3909	!-- must be set.
3910	IF ( soil_type_f%from_file ) THEN
3911	check_passed = .TRUE.
3912	IF ( ALLOCATED( soil_type_f%var_2d ) ) THEN
3913	IF ( soil_type_f%var_2d(j,i) == 0 ) THEN
3914	IF ( ANY( soil_pars_f%pars_xy(:,j,i) == &
3915	soil_pars_f%fill ) ) check_passed = .FALSE.
3916	ENDIF
3917	ELSE
3918	IF ( ANY( soil_type_f%var_3d(:,j,i) == 0 ) ) THEN
3919	IF ( ANY( soil_pars_f%pars_xy(:,j,i) == &
3920	soil_pars_f%fill ) ) check_passed = .FALSE.
3921	ENDIF
3922	ENDIF
3923	IF ( .NOT. check_passed ) THEN
3924	message_string = 'If soil_type(y,x) = 0, all levels of ' //&
3925	'soil_pars at this location must be set.'
3926	CALL message( 'netcdf_data_input_mod', 'PA0571', &
3927	2, 2, myid, 6, 0 )
3928	ENDIF
3929	ENDIF
3930
3931	!
3932	!-- Check building parameters. If building_type is 0, all parameters
3933	!-- must be set.
3934	IF ( building_type_f%from_file ) THEN
3935	IF ( building_type_f%var(j,i) == 0 ) THEN
3936	IF ( ANY( building_pars_f%pars_xy(:,j,i) == &
3937	building_pars_f%fill ) ) THEN
3938	message_string = 'If building_type(y,x) = 0, all ' // &
3939	'parameters of building_pars at this '//&
3940	'location must be set.'
3941	CALL message( 'netcdf_data_input_mod', 'PA0572', &
3942	2, 2, myid, 6, 0 )
3943	ENDIF
3944	ENDIF
3945	ENDIF
3946	!
3947	!-- Check if building_type is set at each building and vice versa.
3948	!-- Please note, buildings are already processed and filtered.
3949	!-- For this reason, consistency checks are based on wall_flags_0
3950	!-- rather than buildings_f (buildings are represented by bit 6 in
3951	!-- wall_flags_0).
3952	IF ( building_type_f%from_file .AND. buildings_f%from_file ) THEN
3953	IF ( ANY( BTEST ( wall_flags_0(:,j,i), 6 ) ) .AND. &
3954	building_type_f%var(j,i) == building_type_f%fill .OR. &
3955	.NOT. ANY( BTEST ( wall_flags_0(:,j,i), 6 ) ) .AND. &
3956	building_type_f%var(j,i) /= building_type_f%fill ) THEN
3957	WRITE( message_string, * ) 'Each location where a ' // &
3958	'building is set requires a type ' // &
3959	'( and vice versa ) in case the ' // &
3960	'urban-surface model is applied. ' // &
3961	'i, j = ', i, j
3962	CALL message( 'netcdf_data_input_mod', 'PA0573', &
3963	2, 2, myid, 6, 0 )
3964	ENDIF
3965	ENDIF
3966	!
3967	!-- Check if at each location where a building is present also an ID
3968	!-- is set and vice versa.
3969	IF ( buildings_f%from_file ) THEN
3970	IF ( ANY( BTEST ( wall_flags_0(:,j,i), 6 ) ) .AND. &
3971	building_id_f%var(j,i) == building_id_f%fill .OR. &
3972	.NOT. ANY( BTEST ( wall_flags_0(:,j,i), 6 ) ) .AND. &
3973	building_id_f%var(j,i) /= building_id_f%fill ) THEN
3974	WRITE( message_string, * ) 'Each location where a ' // &
3975	'building is set requires an ID ' // &
3976	'( and vice versa ). i, j = ', i, j
3977	CALL message( 'netcdf_data_input_mod', 'PA0574', &
3978	2, 2, myid, 6, 0 )
3979	ENDIF
3980	ENDIF
3981	!
3982	!-- Check if building ID is set where a bulding is defined.
3983	IF ( buildings_f%from_file ) THEN
3984	IF ( ANY( BTEST ( wall_flags_0(:,j,i), 6 ) ) .AND. &
3985	building_id_f%var(j,i) == building_id_f%fill ) THEN
3986	WRITE( message_string, * ) 'Each building grid point '// &
3987	'requires an ID.', i, j
3988	CALL message( 'netcdf_data_input_mod', 'PA0575', &
3989	2, 2, myid, 6, 0 )
3990	ENDIF
3991	ENDIF
3992	!
3993	!-- Check albedo parameters. If albedo_type is 0, all parameters
3994	!-- must be set.
3995	IF ( albedo_type_f%from_file ) THEN
3996	IF ( albedo_type_f%var(j,i) == 0 ) THEN
3997	IF ( ANY( albedo_pars_f%pars_xy(:,j,i) == &
3998	albedo_pars_f%fill ) ) THEN
3999	message_string = 'If albedo_type(y,x) = 0, all ' // &
4000	'parameters of albedo_pars at this ' // &
4001	'location must be set.'
4002	CALL message( 'netcdf_data_input_mod', 'PA0576', &
4003	2, 2, myid, 6, 0 )
4004	ENDIF
4005	ENDIF
4006	ENDIF
4007
4008	!
4009	!-- Check pavement parameters. If pavement_type is 0, all parameters
4010	!-- of pavement_pars must be set at this location.
4011	IF ( pavement_type_f%from_file ) THEN
4012	IF ( pavement_type_f%var(j,i) == 0 ) THEN
4013	IF ( ANY( pavement_pars_f%pars_xy(:,j,i) == &
4014	pavement_pars_f%fill ) ) THEN
4015	message_string = 'If pavement_type(y,x) = 0, all ' // &
4016	'parameters of pavement_pars at this '//&
4017	'location must be set.'
4018	CALL message( 'netcdf_data_input_mod', 'PA0577', &
4019	2, 2, myid, 6, 0 )
4020	ENDIF
4021	ENDIF
4022	ENDIF
4023	!
4024	!-- Check pavement-subsurface parameters. If pavement_type is 0,
4025	!-- all parameters of pavement_subsurface_pars must be set at this
4026	!-- location.
4027	IF ( pavement_type_f%from_file ) THEN
4028	IF ( pavement_type_f%var(j,i) == 0 ) THEN
4029	IF ( ANY( pavement_subsurface_pars_f%pars_xyz(:,:,j,i) == &
4030	pavement_subsurface_pars_f%fill ) ) THEN
4031	message_string = 'If pavement_type(y,x) = 0, all ' // &
4032	'parameters of ' // &
4033	'pavement_subsurface_pars at this '// &
4034	'location must be set.'
4035	CALL message( 'netcdf_data_input_mod', 'PA0578', &
4036	2, 2, myid, 6, 0 )
4037	ENDIF
4038	ENDIF
4039	ENDIF
4040
4041	!
4042	!-- Check water parameters. If water_type is 0, all parameters
4043	!-- must be set at this location.
4044	IF ( water_type_f%from_file ) THEN
4045	IF ( water_type_f%var(j,i) == 0 ) THEN
4046	IF ( ANY( water_pars_f%pars_xy(:,j,i) == &
4047	water_pars_f%fill ) ) THEN
4048	message_string = 'If water_type(y,x) = 0, all ' // &
4049	'parameters of water_pars at this ' // &
4050	'location must be set.'
4051	CALL message( 'netcdf_data_input_mod', 'PA0579', &
4052	2, 2, myid, 6, 0 )
4053	ENDIF
4054	ENDIF
4055	ENDIF
4056
4057	ENDDO
4058	ENDDO
4059
4060	END SUBROUTINE netcdf_data_input_check_static
4061
4062	!------------------------------------------------------------------------------!
4063	! Description:
4064	! ------------
4065	!> Resize 8-bit 2D Integer array: (nys:nyn,nxl:nxr) -> (nysg:nyng,nxlg:nxrg)
4066	!------------------------------------------------------------------------------!
4067	SUBROUTINE resize_array_2d_int8( var, js, je, is, ie )
4068
4069	IMPLICIT NONE
4070
4071	INTEGER(iwp) :: je !< upper index bound along y direction
4072	INTEGER(iwp) :: js !< lower index bound along y direction
4073	INTEGER(iwp) :: ie !< upper index bound along x direction
4074	INTEGER(iwp) :: is !< lower index bound along x direction
4075
4076	INTEGER(KIND=1), DIMENSION(:,:), ALLOCATABLE :: var !< treated variable
4077	INTEGER(KIND=1), DIMENSION(:,:), ALLOCATABLE :: var_tmp !< temporary copy
4078	!
4079	!-- Allocate temporary variable
4080	ALLOCATE( var_tmp(js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4081	!
4082	!-- Temporary copy of the variable
4083	var_tmp(js:je,is:ie) = var(js:je,is:ie)
4084	!
4085	!-- Resize the array
4086	DEALLOCATE( var )
4087	ALLOCATE( var(js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4088	!
4089	!-- Transfer temporary copy back to original array
4090	var(js:je,is:ie) = var_tmp(js:je,is:ie)
4091
4092	END SUBROUTINE resize_array_2d_int8
4093
4094	!------------------------------------------------------------------------------!
4095	! Description:
4096	! ------------
4097	!> Resize 32-bit 2D Integer array: (nys:nyn,nxl:nxr) -> (nysg:nyng,nxlg:nxrg)
4098	!------------------------------------------------------------------------------!
4099	SUBROUTINE resize_array_2d_int32( var, js, je, is, ie )
4100
4101	IMPLICIT NONE
4102
4103	INTEGER(iwp) :: je !< upper index bound along y direction
4104	INTEGER(iwp) :: js !< lower index bound along y direction
4105	INTEGER(iwp) :: ie !< upper index bound along x direction
4106	INTEGER(iwp) :: is !< lower index bound along x direction
4107
4108	INTEGER(iwp), DIMENSION(:,:), ALLOCATABLE :: var !< treated variable
4109	INTEGER(iwp), DIMENSION(:,:), ALLOCATABLE :: var_tmp !< temporary copy
4110	!
4111	!-- Allocate temporary variable
4112	ALLOCATE( var_tmp(js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4113	!
4114	!-- Temporary copy of the variable
4115	var_tmp(js:je,is:ie) = var(js:je,is:ie)
4116	!
4117	!-- Resize the array
4118	DEALLOCATE( var )
4119	ALLOCATE( var(js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4120	!
4121	!-- Transfer temporary copy back to original array
4122	var(js:je,is:ie) = var_tmp(js:je,is:ie)
4123
4124	END SUBROUTINE resize_array_2d_int32
4125
4126	!------------------------------------------------------------------------------!
4127	! Description:
4128	! ------------
4129	!> Resize 8-bit 3D Integer array: (:,nys:nyn,nxl:nxr) -> (:,nysg:nyng,nxlg:nxrg)
4130	!------------------------------------------------------------------------------!
4131	SUBROUTINE resize_array_3d_int8( var, ks, ke, js, je, is, ie )
4132
4133	IMPLICIT NONE
4134
4135	INTEGER(iwp) :: je !< upper index bound along y direction
4136	INTEGER(iwp) :: js !< lower index bound along y direction
4137	INTEGER(iwp) :: ie !< upper index bound along x direction
4138	INTEGER(iwp) :: is !< lower index bound along x direction
4139	INTEGER(iwp) :: ke !< upper bound of treated array in z-direction
4140	INTEGER(iwp) :: ks !< lower bound of treated array in z-direction
4141
4142	INTEGER(KIND=1), DIMENSION(:,:,:), ALLOCATABLE :: var !< treated variable
4143	INTEGER(KIND=1), DIMENSION(:,:,:), ALLOCATABLE :: var_tmp !< temporary copy
4144	!
4145	!-- Allocate temporary variable
4146	ALLOCATE( var_tmp(ks:ke,js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4147	!
4148	!-- Temporary copy of the variable
4149	var_tmp(ks:ke,js:je,is:ie) = var(ks:ke,js:je,is:ie)
4150	!
4151	!-- Resize the array
4152	DEALLOCATE( var )
4153	ALLOCATE( var(ks:ke,js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4154	!
4155	!-- Transfer temporary copy back to original array
4156	var(ks:ke,js:je,is:ie) = var_tmp(ks:ke,js:je,is:ie)
4157
4158	END SUBROUTINE resize_array_3d_int8
4159
4160	!------------------------------------------------------------------------------!
4161	! Description:
4162	! ------------
4163	!> Resize 3D Real array: (:,nys:nyn,nxl:nxr) -> (:,nysg:nyng,nxlg:nxrg)
4164	!------------------------------------------------------------------------------!
4165	SUBROUTINE resize_array_3d_real( var, ks, ke, js, je, is, ie )
4166
4167	IMPLICIT NONE
4168
4169	INTEGER(iwp) :: je !< upper index bound along y direction
4170	INTEGER(iwp) :: js !< lower index bound along y direction
4171	INTEGER(iwp) :: ie !< upper index bound along x direction
4172	INTEGER(iwp) :: is !< lower index bound along x direction
4173	INTEGER(iwp) :: ke !< upper bound of treated array in z-direction
4174	INTEGER(iwp) :: ks !< lower bound of treated array in z-direction
4175
4176	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: var !< treated variable
4177	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: var_tmp !< temporary copy
4178	!
4179	!-- Allocate temporary variable
4180	ALLOCATE( var_tmp(ks:ke,js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4181	!
4182	!-- Temporary copy of the variable
4183	var_tmp(ks:ke,js:je,is:ie) = var(ks:ke,js:je,is:ie)
4184	!
4185	!-- Resize the array
4186	DEALLOCATE( var )
4187	ALLOCATE( var(ks:ke,js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4188	!
4189	!-- Transfer temporary copy back to original array
4190	var(ks:ke,js:je,is:ie) = var_tmp(ks:ke,js:je,is:ie)
4191
4192	END SUBROUTINE resize_array_3d_real
4193
4194	!------------------------------------------------------------------------------!
4195	! Description:
4196	! ------------
4197	!> Resize 4D Real array: (:,:,nys:nyn,nxl:nxr) -> (:,nysg:nyng,nxlg:nxrg)
4198	!------------------------------------------------------------------------------!
4199	SUBROUTINE resize_array_4d_real( var, k1s, k1e, k2s, k2e, js, je, is, ie )
4200
4201	IMPLICIT NONE
4202
4203	INTEGER(iwp) :: je !< upper index bound along y direction
4204	INTEGER(iwp) :: js !< lower index bound along y direction
4205	INTEGER(iwp) :: ie !< upper index bound along x direction
4206	INTEGER(iwp) :: is !< lower index bound along x direction
4207	INTEGER(iwp) :: k1e !< upper bound of treated array in z-direction
4208	INTEGER(iwp) :: k1s !< lower bound of treated array in z-direction
4209	INTEGER(iwp) :: k2e !< upper bound of treated array along parameter space
4210	INTEGER(iwp) :: k2s !< lower bound of treated array along parameter space
4211
4212	REAL(wp), DIMENSION(:,:,:,:), ALLOCATABLE :: var !< treated variable
4213	REAL(wp), DIMENSION(:,:,:,:), ALLOCATABLE :: var_tmp !< temporary copy
4214	!
4215	!-- Allocate temporary variable
4216	ALLOCATE( var_tmp(k1s:k1e,k2s:k2e,js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4217	!
4218	!-- Temporary copy of the variable
4219	var_tmp(k1s:k1e,k2s:k2e,js:je,is:ie) = var(k1s:k1e,k2s:k2e,js:je,is:ie)
4220	!
4221	!-- Resize the array
4222	DEALLOCATE( var )
4223	ALLOCATE( var(k1s:k1e,k2s:k2e,js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4224	!
4225	!-- Transfer temporary copy back to original array
4226	var(k1s:k1e,k2s:k2e,js:je,is:ie) = var_tmp(k1s:k1e,k2s:k2e,js:je,is:ie)
4227
4228	END SUBROUTINE resize_array_4d_real
4229
4230	!------------------------------------------------------------------------------!
4231	! Description:
4232	! ------------
4233	!> Vertical interpolation and extrapolation of 1D variables.
4234	!------------------------------------------------------------------------------!
4235	SUBROUTINE netcdf_data_input_interpolate_1d( var, z_grid, z_file)
4236
4237	IMPLICIT NONE
4238
4239	INTEGER(iwp) :: k !< running index z-direction file
4240	INTEGER(iwp) :: kk !< running index z-direction stretched model grid
4241	INTEGER(iwp) :: kl !< lower index bound along z-direction
4242	INTEGER(iwp) :: ku !< upper index bound along z-direction
4243
4244	REAL(wp), DIMENSION(:) :: z_grid !< grid levels on numeric grid
4245	REAL(wp), DIMENSION(:) :: z_file !< grid levels on file grid
4246	REAL(wp), DIMENSION(:), INTENT(INOUT) :: var !< treated variable
4247	REAL(wp), DIMENSION(:), ALLOCATABLE :: var_tmp !< temporary variable
4248
4249
4250	kl = LBOUND(var,1)
4251	ku = UBOUND(var,1)
4252	ALLOCATE( var_tmp(kl:ku) )
4253
4254	DO k = kl, ku
4255
4256	kk = MINLOC( ABS( z_file - z_grid(k) ), DIM = 1 )
4257
4258	IF ( kk < ku ) THEN
4259	IF ( z_file(kk) - z_grid(k) <= 0.0_wp ) THEN
4260	var_tmp(k) = var(kk) + &
4261	( var(kk+1) - var(kk) ) / &
4262	( z_file(kk+1) - z_file(kk) ) * &
4263	( z_grid(k) - z_file(kk) )
4264
4265	ELSEIF ( z_file(kk) - z_grid(k) > 0.0_wp ) THEN
4266	var_tmp(k) = var(kk-1) + &
4267	( var(kk) - var(kk-1) ) / &
4268	( z_file(kk) - z_file(kk-1) ) * &
4269	( z_grid(k) - z_file(kk-1) )
4270	ENDIF
4271	!
4272	!-- Extrapolate
4273	ELSE
4274
4275	var_tmp(k) = var(ku) + ( var(ku) - var(ku-1) ) / &
4276	( z_file(ku) - z_file(ku-1) ) * &
4277	( z_grid(k) - z_file(ku) )
4278
4279	ENDIF
4280
4281	ENDDO
4282	var(:) = var_tmp(:)
4283
4284	DEALLOCATE( var_tmp )
4285
4286
4287	END SUBROUTINE netcdf_data_input_interpolate_1d
4288
4289
4290	!------------------------------------------------------------------------------!
4291	! Description:
4292	! ------------
4293	!> Vertical interpolation and extrapolation of 1D variables from Inifor grid
4294	!> onto Palm grid, where both have same dimension. Please note, the passed
4295	!> paramter list in 1D version is different compared to 2D version.
4296	!------------------------------------------------------------------------------!
4297	SUBROUTINE netcdf_data_input_interpolate_1d_soil( var, var_file, &
4298	z_grid, z_file, &
4299	nzb_var, nzt_var, &
4300	nzb_file, nzt_file )
4301
4302	IMPLICIT NONE
4303
4304	INTEGER(iwp) :: k !< running index z-direction file
4305	INTEGER(iwp) :: kk !< running index z-direction stretched model grid
4306	INTEGER(iwp) :: ku !< upper index bound along z-direction for varialbe from file
4307	INTEGER(iwp) :: nzb_var !< lower bound of final array
4308	INTEGER(iwp) :: nzt_var !< upper bound of final array
4309	INTEGER(iwp) :: nzb_file !< lower bound of file array
4310	INTEGER(iwp) :: nzt_file !< upper bound of file array
4311
4312	! LOGICAL, OPTIONAL :: zsoil !< flag indicating reverse z-axis, i.e. zsoil instead of height, e.g. in case of ocean or soil
4313
4314	REAL(wp), DIMENSION(nzb_var:nzt_var) :: z_grid !< grid levels on numeric grid
4315	REAL(wp), DIMENSION(nzb_file:nzt_file) :: z_file !< grid levels on file grid
4316	REAL(wp), DIMENSION(nzb_var:nzt_var) :: var !< treated variable
4317	REAL(wp), DIMENSION(nzb_file:nzt_file) :: var_file !< temporary variable
4318
4319	ku = nzt_file
4320
4321	DO k = nzb_var, nzt_var
4322	!
4323	!-- Determine index on Inifor grid which is closest to the actual height
4324	kk = MINLOC( ABS( z_file - z_grid(k) ), DIM = 1 )
4325	!
4326	!-- If closest index on Inifor grid is smaller than top index,
4327	!-- interpolate the data
4328	IF ( kk < nzt_file ) THEN
4329	IF ( z_file(kk) - z_grid(k) <= 0.0_wp ) THEN
4330	var(k) = var_file(kk) + ( var_file(kk+1) - var_file(kk) ) / &
4331	( z_file(kk+1) - z_file(kk) ) * &
4332	( z_grid(k) - z_file(kk) )
4333
4334	ELSEIF ( z_file(kk) - z_grid(k) > 0.0_wp ) THEN
4335	var(k) = var_file(kk-1) + ( var_file(kk) - var_file(kk-1) ) / &
4336	( z_file(kk) - z_file(kk-1) ) * &
4337	( z_grid(k) - z_file(kk-1) )
4338	ENDIF
4339	!
4340	!-- Extrapolate if actual height is above the highest Inifor level by the last value
4341	ELSE
4342	var(k) = var_file(ku)
4343	ENDIF
4344
4345	ENDDO
4346
4347	END SUBROUTINE netcdf_data_input_interpolate_1d_soil
4348
4349	!------------------------------------------------------------------------------!
4350	! Description:
4351	! ------------
4352	!> Vertical interpolation and extrapolation of 2D variables at lateral boundaries.
4353	!------------------------------------------------------------------------------!
4354	SUBROUTINE netcdf_data_input_interpolate_2d( var, z_grid, z_file)
4355
4356	IMPLICIT NONE
4357
4358	INTEGER(iwp) :: i !< running index x- or y -direction
4359	INTEGER(iwp) :: il !< lower index bound along x- or y-direction
4360	INTEGER(iwp) :: iu !< upper index bound along x- or y-direction
4361	INTEGER(iwp) :: k !< running index z-direction file
4362	INTEGER(iwp) :: kk !< running index z-direction stretched model grid
4363	INTEGER(iwp) :: kl !< lower index bound along z-direction
4364	INTEGER(iwp) :: ku !< upper index bound along z-direction
4365
4366	REAL(wp), DIMENSION(:) :: z_grid !< grid levels on numeric grid
4367	REAL(wp), DIMENSION(:) :: z_file !< grid levels on file grid
4368	REAL(wp), DIMENSION(:,:), INTENT(INOUT) :: var !< treated variable
4369	REAL(wp), DIMENSION(:), ALLOCATABLE :: var_tmp !< temporary variable
4370
4371
4372	il = LBOUND(var,2)
4373	iu = UBOUND(var,2)
4374	kl = LBOUND(var,1)
4375	ku = UBOUND(var,1)
4376	ALLOCATE( var_tmp(kl:ku) )
4377
4378	DO i = il, iu
4379	DO k = kl, ku
4380
4381	kk = MINLOC( ABS( z_file - z_grid(k) ), DIM = 1 )
4382
4383	IF ( kk < ku ) THEN
4384	IF ( z_file(kk) - z_grid(k) <= 0.0_wp ) THEN
4385	var_tmp(k) = var(kk,i) + &
4386	( var(kk+1,i) - var(kk,i) ) / &
4387	( z_file(kk+1) - z_file(kk) ) * &
4388	( z_grid(k) - z_file(kk) )
4389
4390	ELSEIF ( z_file(kk) - z_grid(k) > 0.0_wp ) THEN
4391	var_tmp(k) = var(kk-1,i) + &
4392	( var(kk,i) - var(kk-1,i) ) / &
4393	( z_file(kk) - z_file(kk-1) ) * &
4394	( z_grid(k) - z_file(kk-1) )
4395	ENDIF
4396	!
4397	!-- Extrapolate
4398	ELSE
4399
4400	var_tmp(k) = var(ku,i) + ( var(ku,i) - var(ku-1,i) ) / &
4401	( z_file(ku) - z_file(ku-1) ) * &
4402	( z_grid(k) - z_file(ku) )
4403
4404	ENDIF
4405
4406	ENDDO
4407	var(:,i) = var_tmp(:)
4408
4409	ENDDO
4410
4411	DEALLOCATE( var_tmp )
4412
4413
4414	END SUBROUTINE netcdf_data_input_interpolate_2d
4415
4416	!------------------------------------------------------------------------------!
4417	! Description:
4418	! ------------
4419	!> Vertical interpolation and extrapolation of 3D variables.
4420	!------------------------------------------------------------------------------!
4421	SUBROUTINE netcdf_data_input_interpolate_3d( var, z_grid, z_file )
4422
4423	IMPLICIT NONE
4424
4425	INTEGER(iwp) :: i !< running index x-direction
4426	INTEGER(iwp) :: il !< lower index bound along x-direction
4427	INTEGER(iwp) :: iu !< upper index bound along x-direction
4428	INTEGER(iwp) :: j !< running index y-direction
4429	INTEGER(iwp) :: jl !< lower index bound along x-direction
4430	INTEGER(iwp) :: ju !< upper index bound along x-direction
4431	INTEGER(iwp) :: k !< running index z-direction file
4432	INTEGER(iwp) :: kk !< running index z-direction stretched model grid
4433	INTEGER(iwp) :: kl !< lower index bound along z-direction
4434	INTEGER(iwp) :: ku