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netcdf_data_input_mod.f90 @ 4012

Last change on this file since 4012 was 4012, checked in by monakurppa, 4 years ago
remove salsa_util_mod.f90 and correct some bugs in salsa and salsa test case
Property svn:keywords set to `Id`
File size: 295.7 KB

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1	!> @file netcdf_data_input_mod.f90
2	!------------------------------------------------------------------------------!
3	! This file is part of the PALM model system.
4	!
5	! PALM is free software: you can redistribute it and/or modify it under the
6	! terms of the GNU General Public License as published by the Free Software
7	! Foundation, either version 3 of the License, or (at your option) any later
8	! version.
9	!
10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
13	!
14	! You should have received a copy of the GNU General Public License along with
15	! PALM. If not, see <http://www.gnu.org/licenses/>.
16	!
17	! Copyright 1997-2019 Leibniz Universitaet Hannover
18	!------------------------------------------------------------------------------!
19	!
20	! Current revisions:
21	! -----------------
22	!
23	!
24	! Former revisions:
25	! -----------------
26	! $Id: netcdf_data_input_mod.f90 4012 2019-05-31 15:19:05Z monakurppa $
27	!
28	! 3994 2019-05-22 18:08:09Z suehring
29	! Remove single location message
30	!
31	! 3976 2019-05-15 11:02:34Z hellstea
32	! Remove unused variables from last commit
33	!
34	! 3969 2019-05-13 12:14:33Z suehring
35	! - clean-up index notations for emission_values to eliminate magic numbers
36	! - introduce temporary variable dum_var_5d as well as subroutines
37	! get_var_5d_real and get_var_5d_real_dynamic
38	! - remove emission-specific code in generic get_variable routines
39	! - in subroutine netcdf_data_input_chemistry_data change netCDF LOD 1
40	! (default) emission_values to the following index order:
41	! z, y, x, species, category
42	! - in subroutine netcdf_data_input_chemistry_data
43	! changed netCDF LOD 2 pre-processed emission_values to the following index
44	! order: time, z, y, x, species
45	! - in type chem_emis_att_type replace nspec with n_emiss_species
46	! but retained nspec for backward compatibility with salsa_mod. (E.C. Chan)
47	!
48	! 3961 2019-05-08 16:12:31Z suehring
49	! Revise checks for building IDs and types
50	!
51	! 3943 2019-05-02 09:50:41Z maronga
52	! Temporarily disabled some (faulty) checks for static driver.
53	!
54	! 3942 2019-04-30 13:08:30Z kanani
55	! Fix: increase LEN of all NetCDF attribute values (caused crash in
56	! netcdf_create_global_atts due to insufficient length)
57	!
58	! 3941 2019-04-30 09:48:33Z suehring
59	! Move check for grid dimension to an earlier point in time when first array
60	! is read.
61	! Improve checks for building types / IDs with respect to 2D/3D buildings.
62	!
63	! 3885 2019-04-11 11:29:34Z kanani
64	! Changes related to global restructuring of location messages and introduction
65	! of additional debug messages
66	!
67	! 3864 2019-04-05 09:01:56Z monakurppa
68	! get_variable_4d_to_3d_real modified to enable read in data of type
69	! data(t,y,x,n) one timestep at a time + some routines made public
70	!
71	! 3855 2019-04-03 10:00:59Z suehring
72	! Typo removed
73	!
74	! 3854 2019-04-02 16:59:33Z suehring
75	! Bugfix in one of the checks. Typo removed.
76	!
77	! 3744 2019-02-15 18:38:58Z suehring
78	! Enable mesoscale offline nesting for chemistry variables as well as
79	! initialization of chemistry via dynamic input file.
80	!
81	! 3705 2019-01-29 19:56:39Z suehring
82	! Interface for attribute input of 8-bit and 32-bit integer
83	!
84	! 3704 2019-01-29 19:51:41Z suehring
85	! unused variables removed
86	!
87	! 3560 2018-11-23 09:20:21Z raasch
88	! Some formatting adjustment
89	!
90	! 3556 2018-11-22 14:11:57Z suehring
91	! variables documented and unused variables removed
92	!
93	! 3552 2018-11-22 10:28:35Z suehring
94	! Revise ghost point exchange and resizing of input variables
95	!
96	! 3542 2018-11-20 17:04:13Z suehring
97	! - read optional attributes from file
98	! - set default origin_time
99	!
100	! 3518 2018-11-12 18:10:23Z suehring
101	! Additional checks
102	!
103	! 3516 2018-11-12 15:49:39Z gronemeier
104	! bugfix: - difference in z coordinate between file and PALM must be <1e-6
105	! - output of error 553 for all PEs
106	!
107	! 3498 2018-11-07 10:53:03Z gronemeier
108	! Bugfix: print error message by processor which encounters the error
109	!
110	! 3485 2018-11-03 17:09:40Z gronemeier
111	! - get central meridian from origin_lon if crs does not exist
112	! - set default origin_lon to 0
113	!
114	! 3483 2018-11-02 14:19:26Z raasch
115	! bugfix: misplaced directives for netCDF fixed
116	!
117	! 3474 2018-10-30 21:07:39Z kanani
118	! Add UV exposure model input (Schrempf)
119	!
120	! 3472 2018-10-30 20:43:50Z suehring
121	! Salsa implemented
122	!
123	! 3464 2018-10-30 18:08:55Z kanani
124	! Define coordinate reference system (crs) and read from input dataset
125	! Revise default values for reference coordinates
126	!
127	! 3459 2018-10-30 15:04:11Z gronemeier
128	! from chemistry branch r3443, banzhafs, Russo:
129	! Uncommented lines on dimension of surface_fractions
130	! Removed par_emis_time_factor variable, moved to chem_emissions_mod
131	! Initialized nspec and other emission variables at time of declaration
132	! Modified EXPERT mode to PRE-PROCESSED mode
133	! Introduced Chemistry static netcdf file
134	! Added the routine for reading-in netcdf data for chemistry
135	! Added routines to get_variable interface specific for chemistry files
136	!
137	! 3429 2018-10-25 13:04:23Z knoop
138	! add default values of origin_x/y/z
139	!
140	! 3404 2018-10-23 13:29:11Z suehring
141	! Consider time-dependent geostrophic wind components in offline nesting
142	!
143	! 3376 2018-10-19 10:15:32Z suehring
144	! Additional check for consistent building initialization implemented
145	!
146	! 3347 2018-10-15 14:21:08Z suehring
147	! Subroutine renamed
148	!
149	! 3257 2018-09-17 17:11:46Z suehring
150	! (from branch resler)
151	! Formatting
152	!
153	! 3298 2018-10-02 12:21:11Z kanani
154	! Modified EXPERT mode to PRE-PROCESSED mode (Russo)
155	! Introduced Chemistry static netcdf file (Russo)
156	! Added the routine for reading-in netcdf data for chemistry (Russo)
157	! Added routines to get_variable interface specific for chemistry files (Russo)
158	!
159	! 3257 2018-09-17 17:11:46Z suehring
160	! Adjust checks for building_type and building_id, which is necessary after
161	! topography filtering (building_type and id can be modified by the filtering).
162	!
163	! 3254 2018-09-17 10:53:57Z suehring
164	! Additional check for surface_fractions and and checks for building_id and
165	! building_type extended.
166	!
167	! 3241 2018-09-12 15:02:00Z raasch
168	! unused variables removed
169	!
170	! 3215 2018-08-29 09:58:59Z suehring
171	! - Separate input of soil properties from input of atmospheric data. This
172	! enables input of soil properties also in child domains without any
173	! dependence on atmospheric input
174	! - Check for missing initial 1D/3D data in dynamic input file
175	! - Revise checks for matching grid spacing in model and input file
176	! - Bugfix, add netcdf4_parallel directive for collective read operation
177	! - Revise error message numbers
178	!
179	! 3209 2018-08-27 16:58:37Z suehring
180	! Read zsoil dimension length only if soil variables are provided
181	!
182	! 3183 2018-07-27 14:25:55Z suehring
183	! Adjust input of dynamic driver according to revised Inifor version.
184	! Replace simulated_time by time_since_reference_point.
185	! Rename variables in mesoscale-offline nesting mode.
186	!
187	! 3182 2018-07-27 13:36:03Z suehring
188	! Slightly revise check for surface_fraction in order to check only the relevant
189	! fractions
190	!
191	! 3103 2018-07-04 17:30:52Z suehring
192	! New check for negative terrain heights
193	!
194	! 3089 2018-06-27 13:20:38Z suehring
195	! Revise call for message routine in case of local data inconsistencies.
196	!
197	! 3054 2018-06-01 16:08:59Z gronemeier
198	! Bugfix: force an MPI abort if errors occur while reading building heights
199	! from ASCII file
200	!
201	! 3053 2018-06-01 12:59:07Z suehring
202	! Revise checks for variable surface_fraction
203	!
204	! 3051 2018-05-30 17:43:55Z suehring
205	! - Speed-up NetCDF input
206	! - Revise input routines and remove NetCDF input via IO-blocks since this is
207	! not working in parallel mode in case blocking collective read operations
208	! are done
209	! - Temporarily revoke renaming of input variables in dynamic driver (tend_ug,
210	! tend_vg, zsoil) in order to keep dynamic input file working with current
211	! model version
212	! - More detailed error messages created
213	!
214	! 3045 2018-05-28 07:55:41Z Giersch
215	! Error messages revised
216	!
217	! 3041 2018-05-25 10:39:54Z gronemeier
218	! Add data type for global file attributes
219	! Add read of global attributes of static driver
220	!
221	! 3037 2018-05-24 10:39:29Z gronemeier
222	! renamed 'depth' to 'zsoil'
223	!
224	! 3036 2018-05-24 10:18:26Z gronemeier
225	! Revision of input vars according to UC2 data standard
226	! - renamed 'orography_2D' to 'zt'
227	! - renamed 'buildings_2D' to 'buildings_2d'
228	! - renamed 'buildings_3D' to 'buildings_3d'
229	! - renamed 'leaf_are_density' to 'lad'
230	! - renamed 'basal_are_density' to 'bad'
231	! - renamed 'root_are_density_lad' to 'root_area_dens_r'
232	! - renamed 'root_are_density_lsm' to 'root_area_dens_s'
233	! - renamed 'ls_forcing_ug' to 'tend_ug'
234	! - renamed 'ls_forcing_vg' to 'tend_vg'
235	!
236	! 3019 2018-05-13 07:05:43Z maronga
237	! Improved reading speed of large NetCDF files
238	!
239	! 2963 2018-04-12 14:47:44Z suehring
240	! - Revise checks for static input variables.
241	! - Introduce index for vegetation/wall, pavement/green-wall and water/window
242	! surfaces, for clearer access of surface fraction, albedo, emissivity, etc. .
243	!
244	! 2958 2018-04-11 15:38:13Z suehring
245	! Synchronize longitude and latitude between nested model domains, values are
246	! taken from the root model.
247	!
248	! 2955 2018-04-09 15:14:01Z suehring
249	! Extend checks for consistent setting of buildings, its ID and type.
250	! Add log-points to measure CPU time of NetCDF data input.
251	!
252	! 2953 2018-04-09 11:26:02Z suehring
253	! Bugfix in checks for initialization data
254	!
255	! 2947 2018-04-04 18:01:41Z suehring
256	! Checks for dynamic input revised
257	!
258	! 2946 2018-04-04 17:01:23Z suehring
259	! Bugfix for revision 2945, perform checks only if dynamic input file is
260	! available.
261	!
262	! 2945 2018-04-04 16:27:14Z suehring
263	! - Mimic for topography input slightly revised, in order to enable consistency
264	! checks
265	! - Add checks for dimensions in dynamic input file and move already existing
266	! checks
267	!
268	! 2938 2018-03-27 15:52:42Z suehring
269	! Initial read of geostrophic wind components from dynamic driver.
270	!
271	! 2773 2018-01-30 14:12:54Z suehring
272	! Revise checks for surface_fraction.
273	!
274	! 2925 2018-03-23 14:54:11Z suehring
275	! Check for further inconsistent settings of surface_fractions.
276	! Some messages slightly rephrased and error numbers renamed.
277	!
278	! 2898 2018-03-15 13:03:01Z suehring
279	! Check if each building has a type. Further, check if dimensions in static
280	! input file match the model dimensions.
281	!
282	! 2897 2018-03-15 11:47:16Z suehring
283	! Relax restrictions for topography input, terrain and building heights can be
284	! input separately and are not mandatory any more.
285	!
286	! 2874 2018-03-13 10:55:42Z knoop
287	! Bugfix: wrong placement of netcdf cpp-macros fixed
288	!
289	! 2794 2018-02-07 14:09:43Z knoop
290	! Check if 3D building input is consistent to numeric grid.
291	!
292	! 2773 2018-01-30 14:12:54Z suehring
293	! - Enable initialization with 3D topography.
294	! - Move check for correct initialization in nesting mode to check_parameters.
295	!
296	! 2772 2018-01-29 13:10:35Z suehring
297	! Initialization of simulation independent on land-surface model.
298	!
299	! 2746 2018-01-15 12:06:04Z suehring
300	! Read plant-canopy variables independently on land-surface model usage
301	!
302	! 2718 2018-01-02 08:49:38Z maronga
303	! Corrected "Former revisions" section
304	!
305	! 2711 2017-12-20 17:04:49Z suehring
306	! Rename subroutine close_file to avoid double-naming.
307	!
308	! 2700 2017-12-15 14:12:35Z suehring
309	!
310	! 2696 2017-12-14 17:12:51Z kanani
311	! Initial revision (suehring)
312	!
313	! Authors:
314	! --------
315	! @author Matthias Suehring
316	! @author Edward C. Chan
317	! @author Emanuele Russo
318	!
319	! Description:
320	! ------------
321	!> Modulue contains routines to input data according to Palm input data
322	!> standart using dynamic and static input files.
323	!> @todo - Chemistry: revise reading of netcdf file and ajdust formatting
324	!> according to standard!!! (ecc/done)
325	!> @todo - Order input alphabetically
326	!> @todo - Revise error messages and error numbers
327	!> @todo - Input of missing quantities (chemical species, emission rates)
328	!> @todo - Defninition and input of still missing variable attributes
329	!> (ecc/what are they?)
330	!> @todo - Input of initial geostrophic wind profiles with cyclic conditions.
331	!> @todo - remove z dimension from default_emission_data nad preproc_emission_data
332	! and correpsonding subroutines get_var_5d_real and get_var_5d_dynamic (ecc)
333	!> @todo - decpreciate chem_emis_att_type@nspec (ecc)
334	!> @todo - depreciate subroutines get_variable_4d_to_3d_real and
335	!> get_variable_5d_to_4d_real (ecc)
336	!> @todo - introduce useful debug_message(s)
337	!------------------------------------------------------------------------------!
338	MODULE netcdf_data_input_mod
339
340	USE control_parameters, &
341	ONLY: coupling_char, io_blocks, io_group
342
343	USE cpulog, &
344	ONLY: cpu_log, log_point_s
345
346	USE indices, &
347	ONLY: nbgp
348
349	USE kinds
350
351	#if defined ( __netcdf )
352	USE NETCDF
353	#endif
354
355	USE pegrid
356
357	USE surface_mod, &
358	ONLY: ind_pav_green, ind_veg_wall, ind_wat_win
359	!
360	!-- Define type for dimensions.
361	TYPE dims_xy
362	INTEGER(iwp) :: nx !< dimension length in x
363	INTEGER(iwp) :: ny !< dimension length in y
364	INTEGER(iwp) :: nz !< dimension length in z
365	REAL(wp), DIMENSION(:), ALLOCATABLE :: x !< dimension array in x
366	REAL(wp), DIMENSION(:), ALLOCATABLE :: y !< dimension array in y
367	REAL(wp), DIMENSION(:), ALLOCATABLE :: z !< dimension array in z
368	END TYPE dims_xy
369	!
370	!-- Define data type for nesting in larger-scale models like COSMO.
371	!-- Data type comprises u, v, w, pt, and q at lateral and top boundaries.
372	TYPE nest_offl_type
373
374	CHARACTER(LEN=16) :: char_l = 'ls_forcing_left_' !< leading substring for variables at left boundary
375	CHARACTER(LEN=17) :: char_n = 'ls_forcing_north_' !< leading substring for variables at north boundary
376	CHARACTER(LEN=17) :: char_r = 'ls_forcing_right_' !< leading substring for variables at right boundary
377	CHARACTER(LEN=17) :: char_s = 'ls_forcing_south_' !< leading substring for variables at south boundary
378	CHARACTER(LEN=15) :: char_t = 'ls_forcing_top_' !< leading substring for variables at top boundary
379
380	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names !< list of variable in dynamic input file
381	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names_chem_l !< names of mesoscale nested chemistry variables at left boundary
382	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names_chem_n !< names of mesoscale nested chemistry variables at north boundary
383	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names_chem_r !< names of mesoscale nested chemistry variables at right boundary
384	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names_chem_s !< names of mesoscale nested chemistry variables at south boundary
385	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names_chem_t !< names of mesoscale nested chemistry variables at top boundary
386
387	INTEGER(iwp) :: nt !< number of time levels in dynamic input file
388	INTEGER(iwp) :: nzu !< number of vertical levels on scalar grid in dynamic input file
389	INTEGER(iwp) :: nzw !< number of vertical levels on w grid in dynamic input file
390	INTEGER(iwp) :: tind !< time index for reference time in mesoscale-offline nesting
391	INTEGER(iwp) :: tind_p !< time index for following time in mesoscale-offline nesting
392
393	LOGICAL :: init = .FALSE. !< flag indicating that offline nesting is already initialized
394
395	LOGICAL, DIMENSION(:), ALLOCATABLE :: chem_from_file_l !< flags inidicating whether left boundary data for chemistry is in dynamic input file
396	LOGICAL, DIMENSION(:), ALLOCATABLE :: chem_from_file_n !< flags inidicating whether north boundary data for chemistry is in dynamic input file
397	LOGICAL, DIMENSION(:), ALLOCATABLE :: chem_from_file_r !< flags inidicating whether right boundary data for chemistry is in dynamic input file
398	LOGICAL, DIMENSION(:), ALLOCATABLE :: chem_from_file_s !< flags inidicating whether south boundary data for chemistry is in dynamic input file
399	LOGICAL, DIMENSION(:), ALLOCATABLE :: chem_from_file_t !< flags inidicating whether top boundary data for chemistry is in dynamic input file
400
401	REAL(wp), DIMENSION(:), ALLOCATABLE :: surface_pressure !< time dependent surface pressure
402	REAL(wp), DIMENSION(:), ALLOCATABLE :: time !< time levels in dynamic input file
403	REAL(wp), DIMENSION(:), ALLOCATABLE :: zu_atmos !< vertical levels at scalar grid in dynamic input file
404	REAL(wp), DIMENSION(:), ALLOCATABLE :: zw_atmos !< vertical levels at w grid in dynamic input file
405
406	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: ug !< domain-averaged geostrophic component
407	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: vg !< domain-averaged geostrophic component
408
409	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: u_left !< u-component at left boundary
410	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: v_left !< v-component at left boundary
411	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: w_left !< w-component at left boundary
412	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: q_left !< mixing ratio at left boundary
413	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: pt_left !< potentital temperautre at left boundary
414
415	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: u_north !< u-component at north boundary
416	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: v_north !< v-component at north boundary
417	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: w_north !< w-component at north boundary
418	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: q_north !< mixing ratio at north boundary
419	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: pt_north !< potentital temperautre at north boundary
420
421	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: u_right !< u-component at right boundary
422	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: v_right !< v-component at right boundary
423	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: w_right !< w-component at right boundary
424	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: q_right !< mixing ratio at right boundary
425	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: pt_right !< potentital temperautre at right boundary
426
427	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: u_south !< u-component at south boundary
428	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: v_south !< v-component at south boundary
429	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: w_south !< w-component at south boundary
430	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: q_south !< mixing ratio at south boundary
431	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: pt_south !< potentital temperautre at south boundary
432
433	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: u_top !< u-component at top boundary
434	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: v_top !< v-component at top boundary
435	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: w_top !< w-component at top boundary
436	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: q_top !< mixing ratio at top boundary
437	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: pt_top !< potentital temperautre at top boundary
438
439	REAL(wp), DIMENSION(:,:,:,:), ALLOCATABLE :: chem_left !< chemical species at left boundary
440	REAL(wp), DIMENSION(:,:,:,:), ALLOCATABLE :: chem_north !< chemical species at left boundary
441	REAL(wp), DIMENSION(:,:,:,:), ALLOCATABLE :: chem_right !< chemical species at left boundary
442	REAL(wp), DIMENSION(:,:,:,:), ALLOCATABLE :: chem_south !< chemical species at left boundary
443	REAL(wp), DIMENSION(:,:,:,:), ALLOCATABLE :: chem_top !< chemical species at left boundary
444
445	END TYPE nest_offl_type
446
447	TYPE init_type
448
449	CHARACTER(LEN=16) :: init_char = 'init_atmosphere_' !< leading substring for init variables
450	CHARACTER(LEN=23) :: origin_time = '2000-01-01 00:00:00 +00' !< reference time of input data
451	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names_chem !< list of chemistry variable names that can potentially be on file
452
453	INTEGER(iwp) :: lod_msoil !< level of detail - soil moisture
454	INTEGER(iwp) :: lod_pt !< level of detail - pt
455	INTEGER(iwp) :: lod_q !< level of detail - q
456	INTEGER(iwp) :: lod_tsoil !< level of detail - soil temperature
457	INTEGER(iwp) :: lod_u !< level of detail - u-component
458	INTEGER(iwp) :: lod_v !< level of detail - v-component
459	INTEGER(iwp) :: lod_w !< level of detail - w-component
460	INTEGER(iwp) :: nx !< number of scalar grid points along x in dynamic input file
461	INTEGER(iwp) :: nxu !< number of u grid points along x in dynamic input file
462	INTEGER(iwp) :: ny !< number of scalar grid points along y in dynamic input file
463	INTEGER(iwp) :: nyv !< number of v grid points along y in dynamic input file
464	INTEGER(iwp) :: nzs !< number of vertical soil levels in dynamic input file
465	INTEGER(iwp) :: nzu !< number of vertical levels on scalar grid in dynamic input file
466	INTEGER(iwp) :: nzw !< number of vertical levels on w grid in dynamic input file
467
468	INTEGER(iwp), DIMENSION(:), ALLOCATABLE :: lod_chem !< level of detail - chemistry variables
469
470	LOGICAL :: from_file_msoil = .FALSE. !< flag indicating whether soil moisture is already initialized from file
471	LOGICAL :: from_file_pt = .FALSE. !< flag indicating whether pt is already initialized from file
472	LOGICAL :: from_file_q = .FALSE. !< flag indicating whether q is already initialized from file
473	LOGICAL :: from_file_tsoil = .FALSE. !< flag indicating whether soil temperature is already initialized from file
474	LOGICAL :: from_file_u = .FALSE. !< flag indicating whether u is already initialized from file
475	LOGICAL :: from_file_ug = .FALSE. !< flag indicating whether ug is already initialized from file
476	LOGICAL :: from_file_v = .FALSE. !< flag indicating whether v is already initialized from file
477	LOGICAL :: from_file_vg = .FALSE. !< flag indicating whether ug is already initialized from file
478	LOGICAL :: from_file_w = .FALSE. !< flag indicating whether w is already initialized from file
479
480	LOGICAL, DIMENSION(:), ALLOCATABLE :: from_file_chem !< flag indicating whether chemistry variable is read from file
481
482	REAL(wp) :: fill_msoil !< fill value for soil moisture
483	REAL(wp) :: fill_pt !< fill value for pt
484	REAL(wp) :: fill_q !< fill value for q
485	REAL(wp) :: fill_tsoil !< fill value for soil temperature
486	REAL(wp) :: fill_u !< fill value for u
487	REAL(wp) :: fill_v !< fill value for v
488	REAL(wp) :: fill_w !< fill value for w
489	REAL(wp) :: latitude = 0.0_wp !< latitude of the lower left corner
490	REAL(wp) :: longitude = 0.0_wp !< longitude of the lower left corner
491	REAL(wp) :: origin_x = 500000.0_wp !< UTM easting of the lower left corner
492	REAL(wp) :: origin_y = 0.0_wp !< UTM northing of the lower left corner
493	REAL(wp) :: origin_z = 0.0_wp !< reference height of input data
494	REAL(wp) :: rotation_angle = 0.0_wp !< rotation angle of input data
495
496	REAL(wp), DIMENSION(:), ALLOCATABLE :: fill_chem !< fill value - chemistry variables
497	REAL(wp), DIMENSION(:), ALLOCATABLE :: msoil_1d !< initial vertical profile of soil moisture
498	REAL(wp), DIMENSION(:), ALLOCATABLE :: pt_init !< initial vertical profile of pt
499	REAL(wp), DIMENSION(:), ALLOCATABLE :: q_init !< initial vertical profile of q
500	REAL(wp), DIMENSION(:), ALLOCATABLE :: tsoil_1d !< initial vertical profile of soil temperature
501	REAL(wp), DIMENSION(:), ALLOCATABLE :: u_init !< initial vertical profile of u
502	REAL(wp), DIMENSION(:), ALLOCATABLE :: ug_init !< initial vertical profile of ug
503	REAL(wp), DIMENSION(:), ALLOCATABLE :: v_init !< initial vertical profile of v
504	REAL(wp), DIMENSION(:), ALLOCATABLE :: vg_init !< initial vertical profile of ug
505	REAL(wp), DIMENSION(:), ALLOCATABLE :: w_init !< initial vertical profile of w
506	REAL(wp), DIMENSION(:), ALLOCATABLE :: z_soil !< vertical levels in soil in dynamic input file, used for interpolation
507	REAL(wp), DIMENSION(:), ALLOCATABLE :: zu_atmos !< vertical levels at scalar grid in dynamic input file, used for interpolation
508	REAL(wp), DIMENSION(:), ALLOCATABLE :: zw_atmos !< vertical levels at w grid in dynamic input file, used for interpolation
509
510	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: chem_init !< initial vertical profiles of chemistry variables
511
512
513	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: msoil_3d !< initial 3d soil moisture provide by Inifor and interpolated onto soil grid
514	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: tsoil_3d !< initial 3d soil temperature provide by Inifor and interpolated onto soil grid
515
516	END TYPE init_type
517
518	!-- Data type for the general information of chemistry emissions, do not dependent on the particular chemical species
519	TYPE chem_emis_att_type
520
521	!-DIMENSIONS
522
523	INTEGER(iwp) :: nspec=0 !< no of chem species provided in emission_values
524	INTEGER(iwp) :: n_emiss_species=0 !< no of chem species provided in emission_values
525	!< same function as nspec, which will be depreciated (ecc)
526
527	INTEGER(iwp) :: ncat=0 !< number of emission categories
528	INTEGER(iwp) :: nvoc=0 !< number of VOC components
529	INTEGER(iwp) :: npm=0 !< number of PM components
530	INTEGER(iwp) :: nnox=2 !< number of NOx components: NO and NO2
531	INTEGER(iwp) :: nsox=2 !< number of SOX components: SO and SO4
532	INTEGER(iwp) :: nhoursyear !< number of hours of a specific year in the HOURLY mode
533	!< of the default mode
534	INTEGER(iwp) :: nmonthdayhour !< number of month days and hours in the MDH mode
535	!< of the default mode
536	INTEGER(iwp) :: dt_emission !< Number of emissions timesteps for one year
537	!< in the pre-processed emissions case
538	!-- 1d emission input variables
539	CHARACTER (LEN=25),ALLOCATABLE, DIMENSION(:) :: pm_name !< Names of PM components
540	CHARACTER (LEN=25),ALLOCATABLE, DIMENSION(:) :: cat_name !< Emission category names
541	CHARACTER (LEN=25),ALLOCATABLE, DIMENSION(:) :: species_name !< Names of emission chemical species
542	CHARACTER (LEN=25),ALLOCATABLE, DIMENSION(:) :: voc_name !< Names of VOCs components
543	CHARACTER (LEN=25) :: units !< Units
544
545	INTEGER(iwp) :: i_hour !< indices for assigning emission values at different timesteps
546	INTEGER(iwp),ALLOCATABLE, DIMENSION(:) :: cat_index !< Indices for emission categories
547	INTEGER(iwp),ALLOCATABLE, DIMENSION(:) :: species_index !< Indices for emission chem species
548
549	REAL(wp),ALLOCATABLE, DIMENSION(:) :: xm !< Molecular masses of emission chem species
550
551	!-- 2d emission input variables
552	REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: hourly_emis_time_factor !< Time factors for HOURLY emissions (DEFAULT mode)
553	REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: mdh_emis_time_factor !< Time factors for MDH emissions (DEFAULT mode)
554	REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: nox_comp !< Composition of NO and NO2
555	REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: sox_comp !< Composition of SO2 and SO4
556	REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: voc_comp !< Composition of VOC components (not fixed)
557
558	!-- 3d emission input variables
559	REAL(wp),ALLOCATABLE, DIMENSION(:,:,:) :: pm_comp !< Composition of PM components (not fixed)
560
561	END TYPE chem_emis_att_type
562
563
564	!-- Data type for the values of chemistry emissions
565	TYPE chem_emis_val_type
566
567	!REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: stack_height !< stack height (ecc / to be implemented)
568	REAL(wp),ALLOCATABLE, DIMENSION(:,:,:) :: default_emission_data !< Emission input values for LOD1 (DEFAULT mode)
569	REAL(wp),ALLOCATABLE, DIMENSION(:,:,:,:) :: preproc_emission_data !< Emission input values for LOD2 (PRE-PROCESSED mode)
570
571	END TYPE chem_emis_val_type
572
573	!
574	!-- Define data structures for different input data types.
575	!-- 8-bit Integer 2D
576	TYPE int_2d_8bit
577	INTEGER(KIND=1) :: fill = -127 !< fill value
578	INTEGER(KIND=1), DIMENSION(:,:), ALLOCATABLE :: var !< respective variable
579
580	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
581	END TYPE int_2d_8bit
582	!
583	!-- 8-bit Integer 3D
584	TYPE int_3d_8bit
585	INTEGER(KIND=1) :: fill = -127 !< fill value
586	INTEGER(KIND=1), DIMENSION(:,:,:), ALLOCATABLE :: var_3d !< respective variable
587
588	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
589	END TYPE int_3d_8bit
590	!
591	!-- 32-bit Integer 2D
592	TYPE int_2d_32bit
593	INTEGER(iwp) :: fill = -9999 !< fill value
594	INTEGER(iwp), DIMENSION(:,:), ALLOCATABLE :: var !< respective variable
595
596	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
597	END TYPE int_2d_32bit
598
599	!
600	!-- Define data type to read 2D real variables
601	TYPE real_2d
602	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
603
604	REAL(wp) :: fill = -9999.9_wp !< fill value
605	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: var !< respective variable
606	END TYPE real_2d
607
608	!
609	!-- Define data type to read 3D real variables
610	TYPE real_3d
611	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
612
613	INTEGER(iwp) :: nz !< number of grid points along vertical dimension
614
615	REAL(wp) :: fill = -9999.9_wp !< fill value
616	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: var !< respective variable
617	END TYPE real_3d
618	!
619	!-- Define data structure where the dimension and type of the input depends
620	!-- on the given level of detail.
621	!-- For buildings, the input is either 2D float, or 3d byte.
622	TYPE build_in
623	INTEGER(iwp) :: lod = 1 !< level of detail
624	INTEGER(KIND=1) :: fill2 = -127 !< fill value for lod = 2
625	INTEGER(iwp) :: nz !< number of vertical layers in file
626	INTEGER(KIND=1), DIMENSION(:,:,:), ALLOCATABLE :: var_3d !< 3d variable (lod = 2)
627
628	REAL(wp), DIMENSION(:), ALLOCATABLE :: z !< vertical coordinate for 3D building, used for consistency check
629
630	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
631
632	REAL(wp) :: fill1 = -9999.9_wp !< fill values for lod = 1
633	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: var_2d !< 2d variable (lod = 1)
634	END TYPE build_in
635
636	!
637	!-- For soil_type, the input is either 2D or 3D one-byte integer.
638	TYPE soil_in
639	INTEGER(iwp) :: lod = 1 !< level of detail
640	INTEGER(KIND=1) :: fill = -127 !< fill value for lod = 2
641	INTEGER(KIND=1), DIMENSION(:,:), ALLOCATABLE :: var_2d !< 2d variable (lod = 1)
642	INTEGER(KIND=1), DIMENSION(:,:,:), ALLOCATABLE :: var_3d !< 3d variable (lod = 2)
643
644	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
645	END TYPE soil_in
646
647	!
648	!-- Define data type for fractions between surface types
649	TYPE fracs
650	INTEGER(iwp) :: nf !< total number of fractions
651	INTEGER(iwp), DIMENSION(:), ALLOCATABLE :: nfracs !< dimension array for fraction
652
653	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
654
655	REAL(wp) :: fill = -9999.9_wp !< fill value
656	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: frac !< respective fraction between different surface types
657	END TYPE fracs
658	!
659	!-- Data type for parameter lists, Depending on the given level of detail,
660	!-- the input is 3D or 4D
661	TYPE pars
662	INTEGER(iwp) :: lod = 1 !< level of detail
663	INTEGER(iwp) :: np !< total number of parameters
664	INTEGER(iwp) :: nz !< vertical dimension - number of soil layers
665	INTEGER(iwp), DIMENSION(:), ALLOCATABLE :: layers !< dimension array for soil layers
666	INTEGER(iwp), DIMENSION(:), ALLOCATABLE :: pars !< dimension array for parameters
667
668	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
669
670	REAL(wp) :: fill = -9999.9_wp !< fill value
671	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: pars_xy !< respective parameters, level of detail = 1
672	REAL(wp), DIMENSION(:,:,:,:), ALLOCATABLE :: pars_xyz !< respective parameters, level of detail = 2
673	END TYPE pars
674	!
675	!-- Define type for global file attributes
676	!-- Please refer to the PALM data standard for a detailed description of each
677	!-- attribute.
678	TYPE global_atts_type
679	CHARACTER(LEN=200) :: acronym = ' ' !< acronym of institution
680	CHARACTER(LEN=7) :: acronym_char = 'acronym' !< name of attribute
681	CHARACTER(LEN=200) :: author = ' ' !< first name, last name, email adress
682	CHARACTER(LEN=6) :: author_char = 'author' !< name of attribute
683	CHARACTER(LEN=200) :: campaign = 'PALM-4U' !< name of campaign
684	CHARACTER(LEN=8) :: campaign_char = 'campaign' !< name of attribute
685	CHARACTER(LEN=200) :: comment = ' ' !< comment to data
686	CHARACTER(LEN=7) :: comment_char = 'comment' !< name of attribute
687	CHARACTER(LEN=200) :: contact_person = ' ' !< first name, last name, email adress
688	CHARACTER(LEN=14) :: contact_person_char = 'contact_person' !< name of attribute
689	CHARACTER(LEN=200) :: conventions = 'CF-1.7' !< netCDF convention
690	CHARACTER(LEN=11) :: conventions_char = 'Conventions' !< name of attribute
691	CHARACTER(LEN=23 ) :: creation_time = ' ' !< creation time of data set
692	CHARACTER(LEN=13) :: creation_time_char = 'creation_time' !< name of attribute
693	CHARACTER(LEN=200) :: data_content = ' ' !< content of data set
694	CHARACTER(LEN=12) :: data_content_char = 'data_content' !< name of attribute
695	CHARACTER(LEN=200) :: dependencies = ' ' !< dependencies of data set
696	CHARACTER(LEN=12) :: dependencies_char = 'dependencies' !< name of attribute
697	CHARACTER(LEN=200) :: history = ' ' !< information about data processing
698	CHARACTER(LEN=7) :: history_char = 'history' !< name of attribute
699	CHARACTER(LEN=200) :: institution = ' ' !< name of responsible institution
700	CHARACTER(LEN=11) :: institution_char = 'institution' !< name of attribute
701	CHARACTER(LEN=200) :: keywords = ' ' !< keywords of data set
702	CHARACTER(LEN=8) :: keywords_char = 'keywords' !< name of attribute
703	CHARACTER(LEN=200) :: licence = ' ' !< licence of data set
704	CHARACTER(LEN=7) :: licence_char = 'licence' !< name of attribute
705	CHARACTER(LEN=200) :: location = ' ' !< place which refers to data set
706	CHARACTER(LEN=8) :: location_char = 'location' !< name of attribute
707	CHARACTER(LEN=10) :: origin_lat_char = 'origin_lat' !< name of attribute
708	CHARACTER(LEN=10) :: origin_lon_char = 'origin_lon' !< name of attribute
709	CHARACTER(LEN=23 ) :: origin_time = '2000-01-01 00:00:00 +00' !< reference time
710	CHARACTER(LEN=11) :: origin_time_char = 'origin_time' !< name of attribute
711	CHARACTER(LEN=8) :: origin_x_char = 'origin_x' !< name of attribute
712	CHARACTER(LEN=8) :: origin_y_char = 'origin_y' !< name of attribute
713	CHARACTER(LEN=8) :: origin_z_char = 'origin_z' !< name of attribute
714	CHARACTER(LEN=12) :: palm_version_char = 'palm_version' !< name of attribute
715	CHARACTER(LEN=200) :: references = ' ' !< literature referring to data set
716	CHARACTER(LEN=10) :: references_char = 'references' !< name of attribute
717	CHARACTER(LEN=14) :: rotation_angle_char = 'rotation_angle' !< name of attribute
718	CHARACTER(LEN=200) :: site = ' ' !< name of model domain
719	CHARACTER(LEN=4) :: site_char = 'site' !< name of attribute
720	CHARACTER(LEN=200) :: source = ' ' !< source of data set
721	CHARACTER(LEN=6) :: source_char = 'source' !< name of attribute
722	CHARACTER(LEN=200) :: title = ' ' !< title of data set
723	CHARACTER(LEN=5) :: title_char = 'title' !< name of attribute
724	CHARACTER(LEN=7) :: version_char = 'version' !< name of attribute
725
726	INTEGER(iwp) :: version !< version of data set
727
728	REAL(wp) :: origin_lat !< latitude of lower left corner
729	REAL(wp) :: origin_lon !< longitude of lower left corner
730	REAL(wp) :: origin_x !< easting (UTM coordinate) of lower left corner
731	REAL(wp) :: origin_y !< northing (UTM coordinate) of lower left corner
732	REAL(wp) :: origin_z !< reference height
733	REAL(wp) :: palm_version !< PALM version of data set
734	REAL(wp) :: rotation_angle !< rotation angle of coordinate system of data set
735	END TYPE global_atts_type
736	!
737	!-- Define type for coordinate reference system (crs)
738	TYPE crs_type
739	CHARACTER(LEN=200) :: epsg_code = 'EPSG:25831' !< EPSG code
740	CHARACTER(LEN=200) :: grid_mapping_name = 'transverse_mercator' !< name of grid mapping
741	CHARACTER(LEN=200) :: long_name = 'coordinate reference system' !< name of variable crs
742	CHARACTER(LEN=200) :: units = 'm' !< unit of crs
743
744	REAL(wp) :: false_easting = 500000.0_wp !< false easting
745	REAL(wp) :: false_northing = 0.0_wp !< false northing
746	REAL(wp) :: inverse_flattening = 298.257223563_wp !< 1/f (default for WGS84)
747	REAL(wp) :: latitude_of_projection_origin = 0.0_wp !< latitude of projection origin
748	REAL(wp) :: longitude_of_central_meridian = 3.0_wp !< longitude of central meridian of UTM zone (default: zone 31)
749	REAL(wp) :: longitude_of_prime_meridian = 0.0_wp !< longitude of prime meridian
750	REAL(wp) :: scale_factor_at_central_meridian = 0.9996_wp !< scale factor of UTM coordinates
751	REAL(wp) :: semi_major_axis = 6378137.0_wp !< length of semi major axis (default for WGS84)
752	END TYPE crs_type
753
754	!
755	!-- Define variables
756	TYPE(crs_type) :: coord_ref_sys !< coordinate reference system
757
758	TYPE(dims_xy) :: dim_static !< data structure for x, y-dimension in static input file
759
760	TYPE(nest_offl_type) :: nest_offl !< data structure for data input at lateral and top boundaries (provided by Inifor)
761
762	TYPE(init_type) :: init_3d !< data structure for the initialization of the 3D flow and soil fields
763	TYPE(init_type) :: init_model !< data structure for the initialization of the model
764
765	!
766	!-- Define 2D variables of type NC_BYTE
767	TYPE(int_2d_8bit) :: albedo_type_f !< input variable for albedo type
768	TYPE(int_2d_8bit) :: building_type_f !< input variable for building type
769	TYPE(int_2d_8bit) :: pavement_type_f !< input variable for pavenment type
770	TYPE(int_2d_8bit) :: street_crossing_f !< input variable for water type
771	TYPE(int_2d_8bit) :: street_type_f !< input variable for water type
772	TYPE(int_2d_8bit) :: vegetation_type_f !< input variable for vegetation type
773	TYPE(int_2d_8bit) :: water_type_f !< input variable for water type
774	!
775	!-- Define 3D variables of type NC_BYTE
776	TYPE(int_3d_8bit) :: building_obstruction_f !< input variable for building obstruction
777	TYPE(int_3d_8bit) :: building_obstruction_full !< input variable for building obstruction
778	!
779	!-- Define 2D variables of type NC_INT
780	TYPE(int_2d_32bit) :: building_id_f !< input variable for building ID
781	!
782	!-- Define 2D variables of type NC_FLOAT
783	TYPE(real_2d) :: terrain_height_f !< input variable for terrain height
784	TYPE(real_2d) :: uvem_irradiance_f !< input variable for uvem irradiance lookup table
785	TYPE(real_2d) :: uvem_integration_f !< input variable for uvem integration
786	!
787	!-- Define 3D variables of type NC_FLOAT
788	TYPE(real_3d) :: basal_area_density_f !< input variable for basal area density - resolved vegetation
789	TYPE(real_3d) :: leaf_area_density_f !< input variable for leaf area density - resolved vegetation
790	TYPE(real_3d) :: root_area_density_lad_f !< input variable for root area density - resolved vegetation
791	TYPE(real_3d) :: root_area_density_lsm_f !< input variable for root area density - parametrized vegetation
792	TYPE(real_3d) :: uvem_radiance_f !< input variable for uvem radiance lookup table
793	TYPE(real_3d) :: uvem_projarea_f !< input variable for uvem projection area lookup table
794	!
795	!-- Define input variable for buildings
796	TYPE(build_in) :: buildings_f !< input variable for buildings
797	!
798	!-- Define input variables for soil_type
799	TYPE(soil_in) :: soil_type_f !< input variable for soil type
800
801	TYPE(fracs) :: surface_fraction_f !< input variable for surface fraction
802
803	TYPE(pars) :: albedo_pars_f !< input variable for albedo parameters
804	TYPE(pars) :: building_pars_f !< input variable for building parameters
805	TYPE(pars) :: pavement_pars_f !< input variable for pavement parameters
806	TYPE(pars) :: pavement_subsurface_pars_f !< input variable for pavement parameters
807	TYPE(pars) :: soil_pars_f !< input variable for soil parameters
808	TYPE(pars) :: vegetation_pars_f !< input variable for vegetation parameters
809	TYPE(pars) :: water_pars_f !< input variable for water parameters
810
811	TYPE(chem_emis_att_type) :: chem_emis_att !< Input Information of Chemistry Emission Data from netcdf
812	TYPE(chem_emis_val_type), ALLOCATABLE, DIMENSION(:) :: chem_emis !< Input Chemistry Emission Data from netcdf
813
814	CHARACTER(LEN=3) :: char_lod = 'lod' !< name of level-of-detail attribute in NetCDF file
815
816	CHARACTER(LEN=10) :: char_fill = '_FillValue' !< name of fill value attribute in NetCDF file
817
818	CHARACTER(LEN=100) :: input_file_static = 'PIDS_STATIC' !< Name of file which comprises static input data
819	CHARACTER(LEN=100) :: input_file_dynamic = 'PIDS_DYNAMIC' !< Name of file which comprises dynamic input data
820	CHARACTER(LEN=100) :: input_file_chem = 'PIDS_CHEM' !< Name of file which comprises chemistry input data
821	CHARACTER(LEN=100) :: input_file_uvem = 'PIDS_UVEM' !< Name of file which comprises static uv_exposure model input data
822	CHARACTER(LEN=100) :: input_file_vm = 'PIDS_VM' !< Name of file which comprises virtual measurement data
823
824	CHARACTER(LEN=25), ALLOCATABLE, DIMENSION(:) :: string_values !< output of string variables read from netcdf input files
825
826	INTEGER(iwp) :: id_emis !< NetCDF id of input file for chemistry emissions: TBD: It has to be removed
827
828	INTEGER(iwp) :: nc_stat !< return value of nf90 function call
829
830	LOGICAL :: input_pids_static = .FALSE. !< Flag indicating whether Palm-input-data-standard file containing static information exists
831	LOGICAL :: input_pids_dynamic = .FALSE. !< Flag indicating whether Palm-input-data-standard file containing dynamic information exists
832	LOGICAL :: input_pids_chem = .FALSE. !< Flag indicating whether Palm-input-data-standard file containing chemistry information exists
833	LOGICAL :: input_pids_uvem = .FALSE. !< Flag indicating whether uv-expoure-model input file containing static information exists
834	LOGICAL :: input_pids_vm = .FALSE. !< Flag indicating whether input file for virtual measurements exist
835
836	LOGICAL :: collective_read = .FALSE. !< Enable NetCDF collective read
837
838	TYPE(global_atts_type) :: input_file_atts !< global attributes of input file
839
840	SAVE
841
842	PRIVATE
843
844	INTERFACE netcdf_data_input_interpolate
845	MODULE PROCEDURE netcdf_data_input_interpolate_1d
846	MODULE PROCEDURE netcdf_data_input_interpolate_1d_soil
847	MODULE PROCEDURE netcdf_data_input_interpolate_2d
848	MODULE PROCEDURE netcdf_data_input_interpolate_3d
849	END INTERFACE netcdf_data_input_interpolate
850
851	INTERFACE netcdf_data_input_check_dynamic
852	MODULE PROCEDURE netcdf_data_input_check_dynamic
853	END INTERFACE netcdf_data_input_check_dynamic
854
855	INTERFACE netcdf_data_input_check_static
856	MODULE PROCEDURE netcdf_data_input_check_static
857	END INTERFACE netcdf_data_input_check_static
858
859	INTERFACE netcdf_data_input_chemistry_data
860	MODULE PROCEDURE netcdf_data_input_chemistry_data
861	END INTERFACE netcdf_data_input_chemistry_data
862
863	INTERFACE netcdf_data_input_get_dimension_length
864	MODULE PROCEDURE netcdf_data_input_get_dimension_length
865	END INTERFACE netcdf_data_input_get_dimension_length
866
867	INTERFACE netcdf_data_input_inquire_file
868	MODULE PROCEDURE netcdf_data_input_inquire_file
869	END INTERFACE netcdf_data_input_inquire_file
870
871	INTERFACE netcdf_data_input_init
872	MODULE PROCEDURE netcdf_data_input_init
873	END INTERFACE netcdf_data_input_init
874
875	INTERFACE netcdf_data_input_att
876	MODULE PROCEDURE netcdf_data_input_att_int8
877	MODULE PROCEDURE netcdf_data_input_att_int32
878	MODULE PROCEDURE netcdf_data_input_att_real
879	MODULE PROCEDURE netcdf_data_input_att_string
880	END INTERFACE netcdf_data_input_att
881
882	INTERFACE netcdf_data_input_init_3d
883	MODULE PROCEDURE netcdf_data_input_init_3d
884	END INTERFACE netcdf_data_input_init_3d
885
886	INTERFACE netcdf_data_input_init_lsm
887	MODULE PROCEDURE netcdf_data_input_init_lsm
888	END INTERFACE netcdf_data_input_init_lsm
889
890	INTERFACE netcdf_data_input_offline_nesting
891	MODULE PROCEDURE netcdf_data_input_offline_nesting
892	END INTERFACE netcdf_data_input_offline_nesting
893
894	INTERFACE netcdf_data_input_surface_data
895	MODULE PROCEDURE netcdf_data_input_surface_data
896	END INTERFACE netcdf_data_input_surface_data
897
898	INTERFACE netcdf_data_input_var
899	MODULE PROCEDURE netcdf_data_input_var_char
900	MODULE PROCEDURE netcdf_data_input_var_real_1d
901	MODULE PROCEDURE netcdf_data_input_var_real_2d
902	END INTERFACE netcdf_data_input_var
903
904	INTERFACE netcdf_data_input_uvem
905	MODULE PROCEDURE netcdf_data_input_uvem
906	END INTERFACE netcdf_data_input_uvem
907
908	INTERFACE get_variable
909	MODULE PROCEDURE get_variable_1d_char
910	MODULE PROCEDURE get_variable_1d_int
911	MODULE PROCEDURE get_variable_1d_real
912	MODULE PROCEDURE get_variable_2d_int8
913	MODULE PROCEDURE get_variable_2d_int32
914	MODULE PROCEDURE get_variable_2d_real
915	MODULE PROCEDURE get_variable_3d_int8
916	MODULE PROCEDURE get_variable_3d_real
917	MODULE PROCEDURE get_variable_3d_real_dynamic
918	MODULE PROCEDURE get_variable_4d_to_3d_real
919	MODULE PROCEDURE get_variable_4d_real
920	MODULE PROCEDURE get_variable_5d_to_4d_real
921	MODULE PROCEDURE get_variable_5d_real ! (ecc) temp subroutine 4 reading 5D NC arrays
922	MODULE PROCEDURE get_variable_5d_real_dynamic ! 2B removed as z is out of emission_values
923	MODULE PROCEDURE get_variable_string
924	END INTERFACE get_variable
925
926	INTERFACE get_variable_pr
927	MODULE PROCEDURE get_variable_pr
928	END INTERFACE get_variable_pr
929
930	INTERFACE get_attribute
931	MODULE PROCEDURE get_attribute_real
932	MODULE PROCEDURE get_attribute_int8
933	MODULE PROCEDURE get_attribute_int32
934	MODULE PROCEDURE get_attribute_string
935	END INTERFACE get_attribute
936
937	!
938	!-- Public variables
939	PUBLIC albedo_pars_f, albedo_type_f, basal_area_density_f, buildings_f, &
940	building_id_f, building_pars_f, building_type_f, &
941	chem_emis, chem_emis_att, chem_emis_att_type, chem_emis_val_type, &
942	coord_ref_sys, &
943	init_3d, init_model, input_file_atts, input_file_static, &
944	input_pids_static, &
945	input_pids_dynamic, input_pids_vm, input_file_vm, &
946	leaf_area_density_f, nest_offl, &
947	pavement_pars_f, pavement_subsurface_pars_f, pavement_type_f, &
948	root_area_density_lad_f, root_area_density_lsm_f, soil_pars_f, &
949	soil_type_f, street_crossing_f, street_type_f, surface_fraction_f, &
950	terrain_height_f, vegetation_pars_f, vegetation_type_f, &
951	water_pars_f, water_type_f
952	!
953	!-- Public uv exposure variables
954	PUBLIC building_obstruction_f, input_file_uvem, input_pids_uvem, &
955	netcdf_data_input_uvem, &
956	uvem_integration_f, uvem_irradiance_f, &
957	uvem_projarea_f, uvem_radiance_f
958
959	!
960	!-- Public subroutines
961	PUBLIC netcdf_data_input_check_dynamic, netcdf_data_input_check_static, &
962	netcdf_data_input_chemistry_data, &
963	netcdf_data_input_get_dimension_length, &
964	netcdf_data_input_inquire_file, &
965	netcdf_data_input_init, netcdf_data_input_init_lsm, &
966	netcdf_data_input_init_3d, netcdf_data_input_att, &
967	netcdf_data_input_interpolate, netcdf_data_input_offline_nesting, &
968	netcdf_data_input_surface_data, netcdf_data_input_topo, &
969	netcdf_data_input_var, get_attribute, get_variable, open_read_file, &
970	check_existence, inquire_num_variables, inquire_variable_names, &
971	close_input_file
972
973
974	CONTAINS
975
976	!------------------------------------------------------------------------------!
977	! Description:
978	! ------------
979	!> Inquires whether NetCDF input files according to Palm-input-data standard
980	!> exist. Moreover, basic checks are performed.
981	!------------------------------------------------------------------------------!
982	SUBROUTINE netcdf_data_input_inquire_file
983
984	USE control_parameters, &
985	ONLY: topo_no_distinct
986
987	IMPLICIT NONE
988
989	#if defined ( __netcdf )
990	INQUIRE( FILE = TRIM( input_file_static ) // TRIM( coupling_char ), &
991	EXIST = input_pids_static )
992	INQUIRE( FILE = TRIM( input_file_dynamic ) // TRIM( coupling_char ), &
993	EXIST = input_pids_dynamic )
994	INQUIRE( FILE = TRIM( input_file_chem ) // TRIM( coupling_char ), &
995	EXIST = input_pids_chem )
996	INQUIRE( FILE = TRIM( input_file_uvem ) // TRIM( coupling_char ), &
997	EXIST = input_pids_uvem )
998	INQUIRE( FILE = TRIM( input_file_vm ) // TRIM( coupling_char ), &
999	EXIST = input_pids_vm )
1000	#endif
1001
1002	!
1003	!-- As long as topography can be input via ASCII format, no distinction
1004	!-- between building and terrain can be made. This case, classify all
1005	!-- surfaces as default type. Same in case land-surface and urban-surface
1006	!-- model are not applied.
1007	IF ( .NOT. input_pids_static ) THEN
1008	topo_no_distinct = .TRUE.
1009	ENDIF
1010
1011	END SUBROUTINE netcdf_data_input_inquire_file
1012
1013	!------------------------------------------------------------------------------!
1014	! Description:
1015	! ------------
1016	!> Reads global attributes and coordinate reference system required for
1017	!> initialization of the model.
1018	!------------------------------------------------------------------------------!
1019	SUBROUTINE netcdf_data_input_init
1020
1021	IMPLICIT NONE
1022
1023	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1024	INTEGER(iwp) :: var_id_crs !< NetCDF id of variable crs
1025
1026	IF ( .NOT. input_pids_static ) RETURN
1027
1028	#if defined ( __netcdf )
1029	!
1030	!-- Open file in read-only mode
1031	CALL open_read_file( TRIM( input_file_static ) // &
1032	TRIM( coupling_char ), id_mod )
1033	!
1034	!-- Read global attributes
1035	CALL get_attribute( id_mod, input_file_atts%origin_lat_char, &
1036	input_file_atts%origin_lat, .TRUE. )
1037
1038	CALL get_attribute( id_mod, input_file_atts%origin_lon_char, &
1039	input_file_atts%origin_lon, .TRUE. )
1040
1041	CALL get_attribute( id_mod, input_file_atts%origin_time_char, &
1042	input_file_atts%origin_time, .TRUE. )
1043
1044	CALL get_attribute( id_mod, input_file_atts%origin_x_char, &
1045	input_file_atts%origin_x, .TRUE. )
1046
1047	CALL get_attribute( id_mod, input_file_atts%origin_y_char, &
1048	input_file_atts%origin_y, .TRUE. )
1049
1050	CALL get_attribute( id_mod, input_file_atts%origin_z_char, &
1051	input_file_atts%origin_z, .TRUE. )
1052
1053	CALL get_attribute( id_mod, input_file_atts%rotation_angle_char, &
1054	input_file_atts%rotation_angle, .TRUE. )
1055
1056	CALL get_attribute( id_mod, input_file_atts%author_char, &
1057	input_file_atts%author, .TRUE., no_abort=.FALSE. )
1058	CALL get_attribute( id_mod, input_file_atts%contact_person_char, &
1059	input_file_atts%contact_person, .TRUE., no_abort=.FALSE. )
1060	CALL get_attribute( id_mod, input_file_atts%institution_char, &
1061	input_file_atts%institution, .TRUE., no_abort=.FALSE. )
1062	CALL get_attribute( id_mod, input_file_atts%acronym_char, &
1063	input_file_atts%acronym, .TRUE., no_abort=.FALSE. )
1064
1065	CALL get_attribute( id_mod, input_file_atts%campaign_char, &
1066	input_file_atts%campaign, .TRUE., no_abort=.FALSE. )
1067	CALL get_attribute( id_mod, input_file_atts%location_char, &
1068	input_file_atts%location, .TRUE., no_abort=.FALSE. )
1069	CALL get_attribute( id_mod, input_file_atts%site_char, &
1070	input_file_atts%site, .TRUE., no_abort=.FALSE. )
1071
1072	CALL get_attribute( id_mod, input_file_atts%source_char, &
1073	input_file_atts%source, .TRUE., no_abort=.FALSE. )
1074	CALL get_attribute( id_mod, input_file_atts%references_char, &
1075	input_file_atts%references, .TRUE., no_abort=.FALSE. )
1076	CALL get_attribute( id_mod, input_file_atts%keywords_char, &
1077	input_file_atts%keywords, .TRUE., no_abort=.FALSE. )
1078	CALL get_attribute( id_mod, input_file_atts%licence_char, &
1079	input_file_atts%licence, .TRUE., no_abort=.FALSE. )
1080	CALL get_attribute( id_mod, input_file_atts%comment_char, &
1081	input_file_atts%comment, .TRUE., no_abort=.FALSE. )
1082	!
1083	!-- Read coordinate reference system if available
1084	nc_stat = NF90_INQ_VARID( id_mod, 'crs', var_id_crs )
1085	IF ( nc_stat == NF90_NOERR ) THEN
1086	CALL get_attribute( id_mod, 'epsg_code', &
1087	coord_ref_sys%epsg_code, &
1088	.FALSE., 'crs' )
1089	CALL get_attribute( id_mod, 'false_easting', &
1090	coord_ref_sys%false_easting, &
1091	.FALSE., 'crs' )
1092	CALL get_attribute( id_mod, 'false_northing', &
1093	coord_ref_sys%false_northing, &
1094	.FALSE., 'crs' )
1095	CALL get_attribute( id_mod, 'grid_mapping_name', &
1096	coord_ref_sys%grid_mapping_name, &
1097	.FALSE., 'crs' )
1098	CALL get_attribute( id_mod, 'inverse_flattening', &
1099	coord_ref_sys%inverse_flattening, &
1100	.FALSE., 'crs' )
1101	CALL get_attribute( id_mod, 'latitude_of_projection_origin', &
1102	coord_ref_sys%latitude_of_projection_origin, &
1103	.FALSE., 'crs' )
1104	CALL get_attribute( id_mod, 'long_name', &
1105	coord_ref_sys%long_name, &
1106	.FALSE., 'crs' )
1107	CALL get_attribute( id_mod, 'longitude_of_central_meridian', &
1108	coord_ref_sys%longitude_of_central_meridian, &
1109	.FALSE., 'crs' )
1110	CALL get_attribute( id_mod, 'longitude_of_prime_meridian', &
1111	coord_ref_sys%longitude_of_prime_meridian, &
1112	.FALSE., 'crs' )
1113	CALL get_attribute( id_mod, 'scale_factor_at_central_meridian', &
1114	coord_ref_sys%scale_factor_at_central_meridian, &
1115	.FALSE., 'crs' )
1116	CALL get_attribute( id_mod, 'semi_major_axis', &
1117	coord_ref_sys%semi_major_axis, &
1118	.FALSE., 'crs' )
1119	CALL get_attribute( id_mod, 'units', &
1120	coord_ref_sys%units, &
1121	.FALSE., 'crs' )
1122	ELSE
1123	!
1124	!-- Calculate central meridian from origin_lon
1125	coord_ref_sys%longitude_of_central_meridian = &
1126	CEILING( input_file_atts%origin_lon / 6.0_wp ) * 6.0_wp - 3.0_wp
1127	ENDIF
1128	!
1129	!-- Finally, close input file
1130	CALL close_input_file( id_mod )
1131	#endif
1132	!
1133	!-- Copy latitude, longitude, origin_z, rotation angle on init type
1134	init_model%latitude = input_file_atts%origin_lat
1135	init_model%longitude = input_file_atts%origin_lon
1136	init_model%origin_time = input_file_atts%origin_time
1137	init_model%origin_x = input_file_atts%origin_x
1138	init_model%origin_y = input_file_atts%origin_y
1139	init_model%origin_z = input_file_atts%origin_z
1140	init_model%rotation_angle = input_file_atts%rotation_angle
1141
1142	!
1143	!-- In case of nested runs, each model domain might have different longitude
1144	!-- and latitude, which would result in different Coriolis parameters and
1145	!-- sun-zenith angles. To avoid this, longitude and latitude in each model
1146	!-- domain will be set to the values of the root model. Please note, this
1147	!-- synchronization is required already here.
1148	#if defined( __parallel )
1149	CALL MPI_BCAST( init_model%latitude, 1, MPI_REAL, 0, &
1150	MPI_COMM_WORLD, ierr )
1151	CALL MPI_BCAST( init_model%longitude, 1, MPI_REAL, 0, &
1152	MPI_COMM_WORLD, ierr )
1153	#endif
1154
1155	END SUBROUTINE netcdf_data_input_init
1156
1157	!------------------------------------------------------------------------------!
1158	! Description:
1159	! ------------
1160	!> Read an array of characters.
1161	!------------------------------------------------------------------------------!
1162	SUBROUTINE netcdf_data_input_var_char( val, search_string, id_mod )
1163
1164	IMPLICIT NONE
1165
1166	CHARACTER(LEN=*) :: search_string !< name of the variable
1167	CHARACTER(LEN=*), DIMENSION(:) :: val !< variable which should be read
1168
1169	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1170
1171	#if defined ( __netcdf )
1172	!
1173	!-- Read variable
1174	CALL get_variable( id_mod, search_string, val )
1175	#endif
1176
1177	END SUBROUTINE netcdf_data_input_var_char
1178
1179	!------------------------------------------------------------------------------!
1180	! Description:
1181	! ------------
1182	!> Read an 1D array of REAL values.
1183	!------------------------------------------------------------------------------!
1184	SUBROUTINE netcdf_data_input_var_real_1d( val, search_string, id_mod )
1185
1186	IMPLICIT NONE
1187
1188	CHARACTER(LEN=*) :: search_string !< name of the variable
1189
1190	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1191
1192	REAL(wp), DIMENSION(:) :: val !< variable which should be read
1193
1194	#if defined ( __netcdf )
1195	!
1196	!-- Read variable
1197	CALL get_variable( id_mod, search_string, val )
1198	#endif
1199
1200	END SUBROUTINE netcdf_data_input_var_real_1d
1201
1202	!------------------------------------------------------------------------------!
1203	! Description:
1204	! ------------
1205	!> Read an 1D array of REAL values.
1206	!------------------------------------------------------------------------------!
1207	SUBROUTINE netcdf_data_input_var_real_2d( val, search_string, &
1208	id_mod, d1s, d1e, d2s, d2e )
1209
1210	IMPLICIT NONE
1211
1212	CHARACTER(LEN=*) :: search_string !< name of the variable
1213
1214	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1215	INTEGER(iwp) :: d1e !< end index of first dimension to be read
1216	INTEGER(iwp) :: d2e !< end index of second dimension to be read
1217	INTEGER(iwp) :: d1s !< start index of first dimension to be read
1218	INTEGER(iwp) :: d2s !< start index of second dimension to be read
1219
1220	REAL(wp), DIMENSION(:,:) :: val !< variable which should be read
1221
1222	#if defined ( __netcdf )
1223	!
1224	!-- Read character variable
1225	CALL get_variable( id_mod, search_string, val, d1s, d1e, d2s, d2e )
1226	#endif
1227
1228	END SUBROUTINE netcdf_data_input_var_real_2d
1229
1230	!------------------------------------------------------------------------------!
1231	! Description:
1232	! ------------
1233	!> Read a global string attribute
1234	!------------------------------------------------------------------------------!
1235	SUBROUTINE netcdf_data_input_att_string( val, search_string, id_mod, &
1236	input_file, global, openclose, &
1237	variable_name )
1238
1239	IMPLICIT NONE
1240
1241	CHARACTER(LEN=*) :: search_string !< name of the attribue
1242	CHARACTER(LEN=*) :: val !< attribute
1243
1244	CHARACTER(LEN=*) :: input_file !< name of input file
1245	CHARACTER(LEN=*) :: openclose !< string indicating whether NetCDF needs to be opend or closed
1246	CHARACTER(LEN=*) :: variable_name !< string indicating whether NetCDF needs to be opend or closed
1247
1248	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1249
1250	LOGICAL :: global !< flag indicating a global or a variable's attribute
1251
1252	#if defined ( __netcdf )
1253	!
1254	!-- Open file in read-only mode if necessary
1255	IF ( openclose == 'open' ) THEN
1256	CALL open_read_file( TRIM( input_file ) // TRIM( coupling_char ), &
1257	id_mod )
1258	ENDIF
1259	!
1260	!-- Read global attribute
1261	IF ( global ) THEN
1262	CALL get_attribute( id_mod, search_string, val, global )
1263	!
1264	!-- Read variable attribute
1265	ELSE
1266	CALL get_attribute( id_mod, search_string, val, global, variable_name )
1267	ENDIF
1268	!
1269	!-- Close input file
1270	IF ( openclose == 'close' ) CALL close_input_file( id_mod )
1271	#endif
1272
1273	END SUBROUTINE netcdf_data_input_att_string
1274
1275	!------------------------------------------------------------------------------!
1276	! Description:
1277	! ------------
1278	!> Read a global 8-bit integer attribute
1279	!------------------------------------------------------------------------------!
1280	SUBROUTINE netcdf_data_input_att_int8( val, search_string, id_mod, &
1281	input_file, global, openclose, &
1282	variable_name )
1283
1284	IMPLICIT NONE
1285
1286	CHARACTER(LEN=*) :: search_string !< name of the attribue
1287
1288	CHARACTER(LEN=*) :: input_file !< name of input file
1289	CHARACTER(LEN=*) :: openclose !< string indicating whether NetCDF needs to be opend or closed
1290	CHARACTER(LEN=*) :: variable_name !< string indicating whether NetCDF needs to be opend or closed
1291
1292	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1293	INTEGER(KIND=1) :: val !< value of the attribute
1294
1295	LOGICAL :: global !< flag indicating a global or a variable's attribute
1296
1297	#if defined ( __netcdf )
1298	!
1299	!-- Open file in read-only mode
1300	IF ( openclose == 'open' ) THEN
1301	CALL open_read_file( TRIM( input_file ) // TRIM( coupling_char ), &
1302	id_mod )
1303	ENDIF
1304	!
1305	!-- Read global attribute
1306	IF ( global ) THEN
1307	CALL get_attribute( id_mod, search_string, val, global )
1308	!
1309	!-- Read variable attribute
1310	ELSE
1311	CALL get_attribute( id_mod, search_string, val, global, variable_name )
1312	ENDIF
1313	!
1314	!-- Finally, close input file
1315	IF ( openclose == 'close' ) CALL close_input_file( id_mod )
1316	#endif
1317
1318	END SUBROUTINE netcdf_data_input_att_int8
1319
1320	!------------------------------------------------------------------------------!
1321	! Description:
1322	! ------------
1323	!> Read a global 32-bit integer attribute
1324	!------------------------------------------------------------------------------!
1325	SUBROUTINE netcdf_data_input_att_int32( val, search_string, id_mod, &
1326	input_file, global, openclose, &
1327	variable_name )
1328
1329	IMPLICIT NONE
1330
1331	CHARACTER(LEN=*) :: search_string !< name of the attribue
1332
1333	CHARACTER(LEN=*) :: input_file !< name of input file
1334	CHARACTER(LEN=*) :: openclose !< string indicating whether NetCDF needs to be opend or closed
1335	CHARACTER(LEN=*) :: variable_name !< string indicating whether NetCDF needs to be opend or closed
1336
1337	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1338	INTEGER(iwp) :: val !< value of the attribute
1339
1340	LOGICAL :: global !< flag indicating a global or a variable's attribute
1341
1342	#if defined ( __netcdf )
1343	!
1344	!-- Open file in read-only mode
1345	IF ( openclose == 'open' ) THEN
1346	CALL open_read_file( TRIM( input_file ) // TRIM( coupling_char ), &
1347	id_mod )
1348	ENDIF
1349	!
1350	!-- Read global attribute
1351	IF ( global ) THEN
1352	CALL get_attribute( id_mod, search_string, val, global )
1353	!
1354	!-- Read variable attribute
1355	ELSE
1356	CALL get_attribute( id_mod, search_string, val, global, variable_name )
1357	ENDIF
1358	!
1359	!-- Finally, close input file
1360	IF ( openclose == 'close' ) CALL close_input_file( id_mod )
1361	#endif
1362
1363	END SUBROUTINE netcdf_data_input_att_int32
1364
1365	!------------------------------------------------------------------------------!
1366	! Description:
1367	! ------------
1368	!> Read a global real attribute
1369	!------------------------------------------------------------------------------!
1370	SUBROUTINE netcdf_data_input_att_real( val, search_string, id_mod, &
1371	input_file, global, openclose, &
1372	variable_name )
1373
1374	IMPLICIT NONE
1375
1376	CHARACTER(LEN=*) :: search_string !< name of the attribue
1377
1378	CHARACTER(LEN=*) :: input_file !< name of input file
1379	CHARACTER(LEN=*) :: openclose !< string indicating whether NetCDF needs to be opend or closed
1380	CHARACTER(LEN=*) :: variable_name !< string indicating whether NetCDF needs to be opend or closed
1381
1382	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1383
1384	LOGICAL :: global !< flag indicating a global or a variable's attribute
1385
1386	REAL(wp) :: val !< value of the attribute
1387
1388	#if defined ( __netcdf )
1389	!
1390	!-- Open file in read-only mode
1391	IF ( openclose == 'open' ) THEN
1392	CALL open_read_file( TRIM( input_file ) // TRIM( coupling_char ), &
1393	id_mod )
1394	ENDIF
1395	!
1396	!-- Read global attribute
1397	IF ( global ) THEN
1398	CALL get_attribute( id_mod, search_string, val, global )
1399	!
1400	!-- Read variable attribute
1401	ELSE
1402	CALL get_attribute( id_mod, search_string, val, global, variable_name )
1403	ENDIF
1404	!
1405	!-- Finally, close input file
1406	IF ( openclose == 'close' ) CALL close_input_file( id_mod )
1407	#endif
1408
1409	END SUBROUTINE netcdf_data_input_att_real
1410
1411	!------------------------------------------------------------------------------!
1412	! Description:
1413	! ------------
1414	!> Reads Chemistry NETCDF Input data, such as emission values, emission species, etc.
1415	!------------------------------------------------------------------------------!
1416
1417	SUBROUTINE netcdf_data_input_chemistry_data(emt_att,emt)
1418
1419	USE chem_modules, &
1420	ONLY: emiss_lod, time_fac_type, surface_csflux_name
1421
1422	USE control_parameters, &
1423	ONLY: message_string
1424
1425	USE indices, &
1426	ONLY: nxl, nxr, nys, nyn
1427
1428	IMPLICIT NONE
1429
1430	TYPE(chem_emis_att_type), INTENT(INOUT) :: emt_att
1431	TYPE(chem_emis_val_type), ALLOCATABLE, DIMENSION(:), INTENT(INOUT) :: emt
1432
1433	INTEGER(iwp) :: i, j, k !< generic counters
1434	INTEGER(iwp) :: ispec !< index for number of emission species in input
1435	INTEGER(iwp) :: len_dims !< Length of dimension
1436	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
1437
1438	!
1439	!-- dum_var_4d are designed to read in emission_values from the chemistry netCDF file.
1440	!-- Currently the vestigial "z" dimension in emission_values makes it a 5D array,
1441	!-- hence the corresponding dum_var_5d array. When the "z" dimension is removed
1442	!-- completely, dum_var_4d will be used instead
1443	!-- (ecc 20190425)
1444
1445	! REAL(wp), ALLOCATABLE, DIMENSION(:,:,:,:) :: dum_var_4d !< temp array 4 4D chem emission data
1446	REAL(wp), ALLOCATABLE, DIMENSION(:,:,:,:,:) :: dum_var_5d !< temp array 4 5D chem emission data
1447
1448	!
1449	!-- Start processing data
1450	!
1451	!-- Emission LOD 0 (Parameterized mode)
1452
1453	IF ( emiss_lod == 0 ) THEN
1454
1455	! for reference (ecc)
1456	! IF (TRIM(mode_emis) == "PARAMETERIZED" .OR. TRIM(mode_emis) == "parameterized") THEN
1457
1458	ispec=1
1459	emt_att%n_emiss_species = 0
1460
1461	!
1462	!-- number of species
1463
1464	DO WHILE (TRIM( surface_csflux_name( ispec ) ) /= 'novalue' )
1465
1466	emt_att%n_emiss_species = emt_att%n_emiss_species + 1
1467	ispec=ispec+1
1468	!
1469	!-- followling line retained for compatibility with salsa_mod
1470	!-- which still uses emt_att%nspec heavily (ecc)
1471
1472	emt_att%nspec = emt_att%nspec + 1
1473
1474	ENDDO
1475
1476	!
1477	!-- allocate emission values data type arrays
1478
1479	ALLOCATE ( emt(emt_att%n_emiss_species) )
1480
1481	!
1482	!-- Read EMISSION SPECIES NAMES
1483
1484	!
1485	!-- allocate space for strings
1486
1487	ALLOCATE (emt_att%species_name(emt_att%n_emiss_species) )
1488
1489	DO ispec = 1, emt_att%n_emiss_species
1490	emt_att%species_name(ispec) = TRIM(surface_csflux_name(ispec))
1491	ENDDO
1492
1493	!
1494	!-- LOD 1 (default mode) and LOD 2 (pre-processed mode)
1495
1496	ELSE
1497
1498	#if defined ( __netcdf )
1499
1500	IF ( .NOT. input_pids_chem ) RETURN
1501
1502	!
1503	!-- first we allocate memory space for the emission species and then
1504	!-- we differentiate between LOD 1 (default mode) and LOD 2 (pre-processed mode)
1505
1506	!
1507	!-- open emission data file ( {palmcase}_chemistry )
1508
1509	CALL open_read_file ( TRIM(input_file_chem) // TRIM(coupling_char), id_emis )
1510
1511	!
1512	!-- inquire number of variables
1513
1514	CALL inquire_num_variables ( id_emis, num_vars )
1515
1516	!
1517	!-- Get General Dimension Lengths: only # species and # categories.
1518	!-- Tther dimensions depend on the emission mode or specific components
1519
1520	CALL netcdf_data_input_get_dimension_length ( &
1521	id_emis, emt_att%n_emiss_species, 'nspecies' )
1522
1523	!
1524	!-- backward compatibility for salsa_mod (ecc)
1525
1526	emt_att%nspec = emt_att%n_emiss_species
1527
1528	!
1529	!-- Allocate emission values data type arrays
1530
1531	ALLOCATE ( emt(emt_att%n_emiss_species) )
1532
1533	!
1534	!-- READING IN SPECIES NAMES
1535
1536	!
1537	!-- Allocate memory for species names
1538
1539	ALLOCATE ( emt_att%species_name(emt_att%n_emiss_species) )
1540
1541	!
1542	!-- Retrieve variable name (again, should use n_emiss_strlen)
1543
1544	CALL get_variable( id_emis, 'emission_name', &
1545	string_values, emt_att%n_emiss_species )
1546	emt_att%species_name=string_values
1547
1548	!
1549	!-- dealocate string_values previously allocated in get_variable call
1550
1551	IF ( ALLOCATED(string_values) ) DEALLOCATE (string_values)
1552
1553	!
1554	!-- READING IN SPECIES INDICES
1555
1556	!
1557	!-- Allocate memory for species indices
1558
1559	ALLOCATE ( emt_att%species_index(emt_att%n_emiss_species) )
1560
1561	!
1562	!-- Retrieve variable data
1563
1564	CALL get_variable( id_emis, 'emission_index', emt_att%species_index )
1565	!
1566	!-- Now the routine has to distinguish between chemistry emission
1567	!-- LOD 1 (DEFAULT mode) and LOD 2 (PRE-PROCESSED mode)
1568
1569	!
1570	!-- START OF EMISSION LOD 1 (DEFAULT MODE)
1571
1572
1573	IF ( emiss_lod == 1 ) THEN
1574
1575	! for reference (ecc)
1576	! IF (TRIM(mode_emis) == "DEFAULT" .OR. TRIM(mode_emis) == "default") THEN
1577
1578	!
1579	!-- get number of emission categories
1580
1581	CALL netcdf_data_input_get_dimension_length ( &
1582	id_emis, emt_att%ncat, 'ncat' )
1583
1584	!-- READING IN EMISSION CATEGORIES INDICES
1585
1586	ALLOCATE ( emt_att%cat_index(emt_att%ncat) )
1587
1588	!
1589	!-- Retrieve variable data
1590
1591	CALL get_variable( id_emis, 'emission_cat_index', emt_att%cat_index )
1592
1593
1594	!
1595	!-- Loop through individual species to get basic information on
1596	!-- VOC/PM/NOX/SOX
1597
1598	!------------------------------------------------------------------------------
1599	!-- NOTE - CHECK ARRAY INDICES FOR READING IN NAMES AND SPECIES
1600	!-- IN LOD1 (DEFAULT MODE) FOR THE VARIOUS MODE SPLITS
1601	!-- AS ALL ID_EMIS CONDITIONALS HAVE BEEN REMOVED FROM GET_VAR
1602	!-- FUNCTIONS. IN THEORY THIS WOULD MEAN ALL ARRAYS SHOULD BE
1603	!-- READ FROM 0 to N-1 (C CONVENTION) AS OPPOSED TO 1 to N
1604	!-- (FORTRAN CONVENTION). KEEP THIS IN MIND !!
1605	!-- (ecc 20190424)
1606	!------------------------------------------------------------------------------
1607
1608	DO ispec = 1, emt_att%n_emiss_species
1609
1610	!
1611	!-- VOC DATA (name and composition)
1612
1613	IF ( TRIM(emt_att%species_name(ispec)) == "VOC" .OR. &
1614	TRIM(emt_att%species_name(ispec)) == "voc" ) THEN
1615
1616	!
1617	!-- VOC name
1618	CALL netcdf_data_input_get_dimension_length ( &
1619	id_emis, emt_att%nvoc, 'nvoc' )
1620	ALLOCATE ( emt_att%voc_name(emt_att%nvoc) )
1621	CALL get_variable ( id_emis,"emission_voc_name", &
1622	string_values, emt_att%nvoc )
1623	emt_att%voc_name = string_values
1624	IF ( ALLOCATED(string_values) ) DEALLOCATE (string_values)
1625
1626	!
1627	!-- VOC composition
1628
1629	ALLOCATE ( emt_att%voc_comp(emt_att%ncat,emt_att%nvoc) )
1630	CALL get_variable ( id_emis, "composition_voc", emt_att%voc_comp, &
1631	1, emt_att%ncat, 1, emt_att%nvoc )
1632
1633	ENDIF ! VOC
1634
1635	!
1636	!-- PM DATA (name and composition)
1637
1638	IF ( TRIM(emt_att%species_name(ispec)) == "PM" .OR. &
1639	TRIM(emt_att%species_name(ispec)) == "pm") THEN
1640
1641	!
1642	!-- PM name
1643
1644	CALL netcdf_data_input_get_dimension_length ( &
1645	id_emis, emt_att%npm, 'npm' )
1646	ALLOCATE ( emt_att%pm_name(emt_att%npm) )
1647	CALL get_variable ( id_emis, "pm_name", string_values, emt_att%npm )
1648	emt_att%pm_name = string_values
1649	IF ( ALLOCATED(string_values) ) DEALLOCATE (string_values)
1650
1651	!
1652	!-- PM composition (PM1, PM2.5 and PM10)
1653
1654	len_dims = 3 ! PM1, PM2.5, PM10
1655	ALLOCATE(emt_att%pm_comp(emt_att%ncat,emt_att%npm,len_dims))
1656	CALL get_variable ( id_emis, "composition_pm", emt_att%pm_comp, &
1657	1, emt_att%ncat, 1, emt_att%npm, 1, len_dims )
1658
1659	ENDIF ! PM
1660
1661	!
1662	!-- NOX (NO and NO2)
1663
1664	IF ( TRIM(emt_att%species_name(ispec)) == "NOX" .OR. &
1665	TRIM(emt_att%species_name(ispec)) == "nox" ) THEN
1666
1667	ALLOCATE ( emt_att%nox_comp(emt_att%ncat,emt_att%nnox) )
1668	CALL get_variable ( id_emis, "composition_nox", emt_att%nox_comp, &
1669	1, emt_att%ncat, 1, emt_att%nnox )
1670
1671	ENDIF ! NOX
1672
1673	!
1674	!-- SOX (SO2 and SO4)
1675
1676	IF ( TRIM(emt_att%species_name(ispec)) == "SOX" .OR. &
1677	TRIM(emt_att%species_name(ispec)) == "sox" ) THEN
1678
1679	ALLOCATE ( emt_att%sox_comp(emt_att%ncat,emt_att%nsox) )
1680	CALL get_variable ( id_emis, "composition_sox", emt_att%sox_comp, &
1681	1, emt_att%ncat, 1, emt_att%nsox )
1682
1683	ENDIF ! SOX
1684
1685	ENDDO ! do ispec
1686
1687	!
1688	!-- EMISSION TIME SCALING FACTORS (hourly and MDH data)
1689
1690	!
1691	!-- HOUR
1692	IF ( TRIM(time_fac_type) == "HOUR" .OR. &
1693	TRIM(time_fac_type) == "hour" ) THEN
1694
1695	CALL netcdf_data_input_get_dimension_length ( &
1696	id_emis, emt_att%nhoursyear, 'nhoursyear' )
1697	ALLOCATE ( emt_att%hourly_emis_time_factor(emt_att%ncat,emt_att%nhoursyear) )
1698	CALL get_variable ( id_emis, "emission_time_factors", &
1699	emt_att%hourly_emis_time_factor, &
1700	1, emt_att%ncat, 1, emt_att%nhoursyear )
1701
1702	!
1703	!-- MDH
1704
1705	ELSE IF ( TRIM(time_fac_type) == "MDH" .OR. &
1706	TRIM(time_fac_type) == "mdh" ) THEN
1707
1708	CALL netcdf_data_input_get_dimension_length ( &
1709	id_emis, emt_att%nmonthdayhour, 'nmonthdayhour' )
1710	ALLOCATE ( emt_att%mdh_emis_time_factor(emt_att%ncat,emt_att%nmonthdayhour) )
1711	CALL get_variable ( id_emis, "emission_time_factors", &
1712	emt_att%mdh_emis_time_factor, &
1713	1, emt_att%ncat, 1, emt_att%nmonthdayhour )
1714
1715	!
1716	!-- ERROR (time factor undefined)
1717
1718	ELSE
1719
1720	message_string = 'We are in the DEFAULT chemistry emissions mode: ' // &
1721	' !no time-factor type specified!' // &
1722	'Please specify the value of time_fac_type:' // &
1723	' either "MDH" or "HOUR"'
1724	CALL message( 'netcdf_data_input_chemistry_data', 'CM0200', 2, 2, 0, 6, 0 )
1725
1726
1727	ENDIF ! time_fac_type
1728
1729	!
1730	!-- read in default (LOD1) emissions from chemisty netCDF file per species
1731
1732	!
1733	!-- NOTE - at the moment the data is read in per species, but in the future it would
1734	!-- be much more sensible to read in per species per time step to reduce
1735	!-- memory consumption and, to a lesser degree, dimensionality of data exchange
1736	!-- (I expect this will be necessary when the problem size is large)
1737
1738	DO ispec = 1, emt_att%n_emiss_species
1739
1740	!
1741	!-- allocate space for species specific emission values
1742	!-- NOTE - this array is extended by 1 cell in each horizontal direction
1743	!-- to compensate for an apparent linear offset. The reason of this
1744	!-- offset is not known but it has been determined to take place beyond the
1745	!-- scope of this module, and has little to do with index conventions.
1746	!-- That is, setting the array horizontal limit from nx0:nx1 to 1:(nx1-nx0+1)
1747	!-- or nx0+1:nx1+1 did not result in correct or definite behavior
1748	!-- This must be looked at at some point by the Hannover team but for now
1749	!-- this workaround is deemed reasonable (ecc 20190417)
1750
1751	IF ( .NOT. ALLOCATED ( emt(ispec)%default_emission_data ) ) THEN
1752	ALLOCATE ( emt(ispec)%default_emission_data(emt_att%ncat,nys:nyn+1,nxl:nxr+1) )
1753	ENDIF
1754	!
1755	!-- allocate dummy variable w/ index order identical to that shown in the netCDF header
1756
1757	ALLOCATE ( dum_var_5d(1,nys:nyn,nxl:nxr,1,emt_att%ncat) )
1758	!
1759	!-- get variable. be very careful
1760	!-- I am using get_variable_5d_real_dynamic (note logical argument at the end)
1761	!-- 1) use Fortran index convention (i.e., 1 to N)
1762	!-- 2) index order must be in reverse order from above allocation order
1763
1764	CALL get_variable ( id_emis, "emission_values", dum_var_5d, &
1765	1, ispec, nxl+1, nys+1, 1, &
1766	emt_att%ncat, 1, nxr-nxl+1, nyn-nys+1, emt_att%dt_emission, &
1767	.FALSE. )
1768	!
1769	!-- assign temp array to data structure then deallocate temp array
1770	!-- NOTE - indices are shifted from nx0:nx1 to nx0+1:nx1+1 to offset
1771	!-- the emission data array to counter said domain offset
1772	!-- (ecc 20190417)
1773
1774	DO k = 1, emt_att%ncat
1775	DO j = nys+1, nyn+1
1776	DO i = nxl+1, nxr+1
1777	emt(ispec)%default_emission_data(k,j,i) = dum_var_5d(1,j-1,i-1,1,k)
1778	ENDDO
1779	ENDDO
1780	ENDDO
1781
1782	DEALLOCATE ( dum_var_5d )
1783
1784	ENDDO ! ispec
1785	!
1786	!-- UNITS
1787
1788	CALL get_attribute(id_emis,"units",emt_att%units,.FALSE.,"emission_values")
1789
1790	!
1791	!-- END DEFAULT MODE
1792
1793
1794	!
1795	!-- START LOD 2 (PRE-PROCESSED MODE)
1796
1797	ELSE IF ( emiss_lod == 2 ) THEN
1798
1799	! for reference (ecc)
1800	! ELSE IF (TRIM(mode_emis) == "PRE-PROCESSED" .OR. TRIM(mode_emis) == "pre-processed") THEN
1801
1802	!
1803	!-- For LOD 2 only VOC and emission data need be read
1804
1805	!------------------------------------------------------------------------------
1806	!-- NOTE - CHECK ARRAY INDICES FOR READING IN NAMES AND SPECIES
1807	!-- IN LOD2 (PRE-PROCESSED MODE) FOR THE VARIOUS MODE SPLITS
1808	!-- AS ALL ID_EMIS CONDITIONALS HAVE BEEN REMOVED FROM GET_VAR
1809	!-- FUNCTIONS. IN THEORY THIS WOULD MEAN ALL ARRAYS SHOULD BE
1810	!-- READ FROM 0 to N-1 (C CONVENTION) AS OPPOSED TO 1 to N
1811	!-- (FORTRAN CONVENTION). KEEP THIS IN MIND !!
1812	!-- (ecc 20190424)
1813	!------------------------------------------------------------------------------
1814
1815	DO ispec = 1, emt_att%n_emiss_species
1816
1817	!
1818	!-- VOC DATA (name and composition)
1819
1820	IF ( TRIM(emt_att%species_name(ispec)) == "VOC" .OR. &
1821	TRIM(emt_att%species_name(ispec)) == "voc" ) THEN
1822
1823	!
1824	!-- VOC name
1825	CALL netcdf_data_input_get_dimension_length ( &
1826	id_emis, emt_att%nvoc, 'nvoc' )
1827	ALLOCATE ( emt_att%voc_name(emt_att%nvoc) )
1828	CALL get_variable ( id_emis, "emission_voc_name", &
1829	string_values, emt_att%nvoc)
1830	emt_att%voc_name = string_values
1831	IF ( ALLOCATED(string_values) ) DEALLOCATE (string_values)
1832
1833	!
1834	!-- VOC composition
1835
1836	ALLOCATE ( emt_att%voc_comp(emt_att%ncat,emt_att%nvoc) )
1837	CALL get_variable ( id_emis, "composition_voc", emt_att%voc_comp, &
1838	1, emt_att%ncat, 1, emt_att%nvoc )
1839	ENDIF ! VOC
1840
1841	ENDDO ! ispec
1842
1843	!
1844	!-- EMISSION DATA
1845
1846	CALL netcdf_data_input_get_dimension_length ( &
1847	id_emis, emt_att%dt_emission, 'time' )
1848
1849	!
1850	!-- read in pre-processed (LOD2) emissions from chemisty netCDF file per species
1851
1852	!
1853	!-- NOTE - at the moment the data is read in per species, but in the future it would
1854	!-- be much more sensible to read in per species per time step to reduce
1855	!-- memory consumption and, to a lesser degree, dimensionality of data exchange
1856	!-- (I expect this will be necessary when the problem size is large)
1857
1858	DO ispec = 1, emt_att%n_emiss_species
1859
1860	!
1861	!-- allocate space for species specific emission values
1862	!-- NOTE - this array is extended by 1 cell in each horizontal direction
1863	!-- to compensate for an apparent linear offset. The reason of this
1864	!-- offset is not known but it has been determined to take place beyond the
1865	!-- scope of this module, and has little to do with index conventions.
1866	!-- That is, setting the array horizontal limit from nx0:nx1 to 1:(nx1-nx0+1)
1867	!-- or nx0+1:nx1+1 did not result in correct or definite behavior
1868	!-- This must be looked at at some point by the Hannover team but for now
1869	!-- this workaround is deemed reasonable (ecc 20190417)
1870
1871	IF ( .NOT. ALLOCATED( emt(ispec)%preproc_emission_data ) ) THEN
1872	ALLOCATE( emt(ispec)%preproc_emission_data( &
1873	emt_att%dt_emission, 1, nys:nyn+1, nxl:nxr+1) )
1874	ENDIF
1875	!
1876	!-- allocate dummy variable w/ index order identical to that shown in the netCDF header
1877
1878	ALLOCATE ( dum_var_5d(emt_att%dt_emission,1,nys:nyn,nxl:nxr,1) )
1879	!
1880	!-- get variable. be very careful
1881	!-- I am using get_variable_5d_real_dynamic (note logical argument at the end)
1882	!-- 1) use Fortran index convention (i.e., 1 to N)
1883	!-- 2) index order must be in reverse order from above allocation order
1884
1885	CALL get_variable ( id_emis, "emission_values", dum_var_5d, &
1886	ispec, nxl+1, nys+1, 1, 1, &
1887	1, nxr-nxl+1, nyn-nys+1, 1, emt_att%dt_emission, &
1888	.FALSE. )
1889	!
1890	!-- assign temp array to data structure then deallocate temp array
1891	!-- NOTE - indices are shifted from nx0:nx1 to nx0+1:nx1+1 to offset
1892	!-- the emission data array to counter said unkonwn offset
1893	!-- (ecc 20190417)
1894
1895	DO k = 1, emt_att%dt_emission
1896	DO j = nys+1, nyn+1
1897	DO i = nxl+1, nxr+1
1898	emt(ispec)%preproc_emission_data(k,1,j,i) = dum_var_5d(k,1,j-1,i-1,1)
1899	ENDDO
1900	ENDDO
1901	ENDDO
1902
1903	DEALLOCATE ( dum_var_5d )
1904
1905	ENDDO ! ispec
1906	!
1907	!-- UNITS
1908
1909	CALL get_attribute ( id_emis, "units", emt_att%units, .FALSE. , "emission_values" )
1910
1911	ENDIF ! LOD1 & LOD2 (default and pre-processed mode)
1912
1913	CALL close_input_file (id_emis)
1914
1915	#endif
1916
1917	ENDIF ! LOD0 (parameterized mode)
1918
1919	END SUBROUTINE netcdf_data_input_chemistry_data
1920
1921
1922	!------------------------------------------------------------------------------!
1923	! Description:
1924	! ------------
1925	!> Reads surface classification data, such as vegetation and soil type, etc. .
1926	!------------------------------------------------------------------------------!
1927	SUBROUTINE netcdf_data_input_surface_data
1928
1929	USE control_parameters, &
1930	ONLY: land_surface, plant_canopy, urban_surface
1931
1932	USE indices, &
1933	ONLY: nbgp, nxl, nxr, nyn, nys
1934
1935
1936	IMPLICIT NONE
1937
1938	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names !< variable names in static input file
1939
1940	INTEGER(iwp) :: id_surf !< NetCDF id of input file
1941	INTEGER(iwp) :: k !< running index along z-direction
1942	INTEGER(iwp) :: k2 !< running index
1943	INTEGER(iwp) :: num_vars !< number of variables in input file
1944	INTEGER(iwp) :: nz_soil !< number of soil layers in file
1945
1946	!
1947	!-- If not static input file is available, skip this routine
1948	IF ( .NOT. input_pids_static ) RETURN
1949	!
1950	!-- Measure CPU time
1951	CALL cpu_log( log_point_s(82), 'NetCDF input', 'start' )
1952	!
1953	!-- Read plant canopy variables.
1954	IF ( plant_canopy ) THEN
1955	#if defined ( __netcdf )
1956	!
1957	!-- Open file in read-only mode
1958	CALL open_read_file( TRIM( input_file_static ) // &
1959	TRIM( coupling_char ) , id_surf )
1960	!
1961	!-- At first, inquire all variable names.
1962	!-- This will be used to check whether an optional input variable
1963	!-- exist or not.
1964	CALL inquire_num_variables( id_surf, num_vars )
1965
1966	ALLOCATE( var_names(1:num_vars) )
1967	CALL inquire_variable_names( id_surf, var_names )
1968
1969	!
1970	!-- Read leaf area density - resolved vegetation
1971	IF ( check_existence( var_names, 'lad' ) ) THEN
1972	leaf_area_density_f%from_file = .TRUE.
1973	CALL get_attribute( id_surf, char_fill, &
1974	leaf_area_density_f%fill, &
1975	.FALSE., 'lad' )
1976	!
1977	!-- Inquire number of vertical vegetation layer
1978	CALL netcdf_data_input_get_dimension_length( id_surf, &
1979	leaf_area_density_f%nz, &
1980	'zlad' )
1981	!
1982	!-- Allocate variable for leaf-area density
1983	ALLOCATE( leaf_area_density_f%var( 0:leaf_area_density_f%nz-1, &
1984	nys:nyn,nxl:nxr) )
1985
1986	CALL get_variable( id_surf, 'lad', leaf_area_density_f%var, &
1987	nxl, nxr, nys, nyn, &
1988	0, leaf_area_density_f%nz-1 )
1989
1990	ELSE
1991	leaf_area_density_f%from_file = .FALSE.
1992	ENDIF
1993
1994	!
1995	!-- Read basal area density - resolved vegetation
1996	IF ( check_existence( var_names, 'bad' ) ) THEN
1997	basal_area_density_f%from_file = .TRUE.
1998	CALL get_attribute( id_surf, char_fill, &
1999	basal_area_density_f%fill, &
2000	.FALSE., 'bad' )
2001	!
2002	!-- Inquire number of vertical vegetation layer
2003	CALL netcdf_data_input_get_dimension_length( id_surf, &
2004	basal_area_density_f%nz, &
2005	'zlad' )
2006	!
2007	!-- Allocate variable
2008	ALLOCATE( basal_area_density_f%var(0:basal_area_density_f%nz-1, &
2009	nys:nyn,nxl:nxr) )
2010
2011	CALL get_variable( id_surf, 'bad', basal_area_density_f%var, &
2012	nxl, nxr, nys, nyn, &
2013	0, basal_area_density_f%nz-1 )
2014	ELSE
2015	basal_area_density_f%from_file = .FALSE.
2016	ENDIF
2017
2018	!
2019	!-- Read root area density - resolved vegetation
2020	IF ( check_existence( var_names, 'root_area_dens_r' ) ) THEN
2021	root_area_density_lad_f%from_file = .TRUE.
2022	CALL get_attribute( id_surf, char_fill, &
2023	root_area_density_lad_f%fill, &
2024	.FALSE., 'root_area_dens_r' )
2025	!
2026	!-- Inquire number of vertical soil layers
2027	CALL netcdf_data_input_get_dimension_length( id_surf, &
2028	root_area_density_lad_f%nz, &
2029	'zsoil' )
2030	!
2031	!-- Allocate variable
2032	ALLOCATE( root_area_density_lad_f%var &
2033	(0:root_area_density_lad_f%nz-1, &
2034	nys:nyn,nxl:nxr) )
2035
2036	CALL get_variable( id_surf, 'root_area_dens_r', &
2037	root_area_density_lad_f%var, &
2038	nxl, nxr, nys, nyn, &
2039	0, root_area_density_lad_f%nz-1 )
2040	ELSE
2041	root_area_density_lad_f%from_file = .FALSE.
2042	ENDIF
2043	!
2044	!-- Finally, close input file
2045	CALL close_input_file( id_surf )
2046	#endif
2047	ENDIF
2048	!
2049	!-- Deallocate variable list. Will be re-allocated in case further
2050	!-- variables are read from file.
2051	IF ( ALLOCATED( var_names ) ) DEALLOCATE( var_names )
2052	!
2053	!-- Skip the following if no land-surface or urban-surface module are
2054	!-- applied. This case, no one of the following variables is used anyway.
2055	IF ( .NOT. land_surface .AND. .NOT. urban_surface ) RETURN
2056
2057	#if defined ( __netcdf )
2058	!
2059	!-- Open file in read-only mode
2060	CALL open_read_file( TRIM( input_file_static ) // &
2061	TRIM( coupling_char ) , id_surf )
2062	!
2063	!-- Inquire all variable names.
2064	!-- This will be used to check whether an optional input variable exist
2065	!-- or not.
2066	CALL inquire_num_variables( id_surf, num_vars )
2067
2068	ALLOCATE( var_names(1:num_vars) )
2069	CALL inquire_variable_names( id_surf, var_names )
2070	!
2071	!-- Read vegetation type and required attributes
2072	IF ( check_existence( var_names, 'vegetation_type' ) ) THEN
2073	vegetation_type_f%from_file = .TRUE.
2074	CALL get_attribute( id_surf, char_fill, &
2075	vegetation_type_f%fill, &
2076	.FALSE., 'vegetation_type' )
2077
2078	ALLOCATE ( vegetation_type_f%var(nys:nyn,nxl:nxr) )
2079
2080	CALL get_variable( id_surf, 'vegetation_type', &
2081	vegetation_type_f%var, nxl, nxr, nys, nyn )
2082	ELSE
2083	vegetation_type_f%from_file = .FALSE.
2084	ENDIF
2085
2086	!
2087	!-- Read soil type and required attributes
2088	IF ( check_existence( var_names, 'soil_type' ) ) THEN
2089	soil_type_f%from_file = .TRUE.
2090	!
2091	!-- Note, lod is currently not on file; skip for the moment
2092	! CALL get_attribute( id_surf, char_lod, &
2093	! soil_type_f%lod, &
2094	! .FALSE., 'soil_type' )
2095	CALL get_attribute( id_surf, char_fill, &
2096	soil_type_f%fill, &
2097	.FALSE., 'soil_type' )
2098
2099	IF ( soil_type_f%lod == 1 ) THEN
2100
2101	ALLOCATE ( soil_type_f%var_2d(nys:nyn,nxl:nxr) )
2102
2103	CALL get_variable( id_surf, 'soil_type', soil_type_f%var_2d, &
2104	nxl, nxr, nys, nyn )
2105
2106	ELSEIF ( soil_type_f%lod == 2 ) THEN
2107	!
2108	!-- Obtain number of soil layers from file.
2109	CALL netcdf_data_input_get_dimension_length( id_surf, nz_soil, &
2110	'zsoil' )
2111
2112	ALLOCATE ( soil_type_f%var_3d(0:nz_soil,nys:nyn,nxl:nxr) )
2113
2114	CALL get_variable( id_surf, 'soil_type', soil_type_f%var_3d, &
2115	nxl, nxr, nys, nyn, 0, nz_soil )
2116
2117	ENDIF
2118	ELSE
2119	soil_type_f%from_file = .FALSE.
2120	ENDIF
2121
2122	!
2123	!-- Read pavement type and required attributes
2124	IF ( check_existence( var_names, 'pavement_type' ) ) THEN
2125	pavement_type_f%from_file = .TRUE.
2126	CALL get_attribute( id_surf, char_fill, &
2127	pavement_type_f%fill, .FALSE., &
2128	'pavement_type' )
2129
2130	ALLOCATE ( pavement_type_f%var(nys:nyn,nxl:nxr) )
2131
2132	CALL get_variable( id_surf, 'pavement_type', pavement_type_f%var, &
2133	nxl, nxr, nys, nyn )
2134	ELSE
2135	pavement_type_f%from_file = .FALSE.
2136	ENDIF
2137
2138	!
2139	!-- Read water type and required attributes
2140	IF ( check_existence( var_names, 'water_type' ) ) THEN
2141	water_type_f%from_file = .TRUE.
2142	CALL get_attribute( id_surf, char_fill, water_type_f%fill, &
2143	.FALSE., 'water_type' )
2144
2145	ALLOCATE ( water_type_f%var(nys:nyn,nxl:nxr) )
2146
2147	CALL get_variable( id_surf, 'water_type', water_type_f%var, &
2148	nxl, nxr, nys, nyn )
2149
2150	ELSE
2151	water_type_f%from_file = .FALSE.
2152	ENDIF
2153	!
2154	!-- Read relative surface fractions of vegetation, pavement and water.
2155	IF ( check_existence( var_names, 'surface_fraction' ) ) THEN
2156	surface_fraction_f%from_file = .TRUE.
2157	CALL get_attribute( id_surf, char_fill, &
2158	surface_fraction_f%fill, &
2159	.FALSE., 'surface_fraction' )
2160	!
2161	!-- Inquire number of surface fractions
2162	CALL netcdf_data_input_get_dimension_length( id_surf, &
2163	surface_fraction_f%nf, &
2164	'nsurface_fraction' )
2165	!
2166	!-- Allocate dimension array and input array for surface fractions
2167	ALLOCATE( surface_fraction_f%nfracs(0:surface_fraction_f%nf-1) )
2168	ALLOCATE( surface_fraction_f%frac(0:surface_fraction_f%nf-1, &
2169	nys:nyn,nxl:nxr) )
2170	!
2171	!-- Get dimension of surface fractions
2172	CALL get_variable( id_surf, 'nsurface_fraction', &
2173	surface_fraction_f%nfracs )
2174	!
2175	!-- Read surface fractions
2176	CALL get_variable( id_surf, 'surface_fraction', &
2177	surface_fraction_f%frac, nxl, nxr, nys, nyn, &
2178	0, surface_fraction_f%nf-1 )
2179	ELSE
2180	surface_fraction_f%from_file = .FALSE.
2181	ENDIF
2182	!
2183	!-- Read building parameters and related information
2184	IF ( check_existence( var_names, 'building_pars' ) ) THEN
2185	building_pars_f%from_file = .TRUE.
2186	CALL get_attribute( id_surf, char_fill, &
2187	building_pars_f%fill, &
2188	.FALSE., 'building_pars' )
2189	!
2190	!-- Inquire number of building parameters
2191	CALL netcdf_data_input_get_dimension_length( id_surf, &
2192	building_pars_f%np, &
2193	'nbuilding_pars' )
2194	!
2195	!-- Allocate dimension array and input array for building parameters
2196	ALLOCATE( building_pars_f%pars(0:building_pars_f%np-1) )
2197	ALLOCATE( building_pars_f%pars_xy(0:building_pars_f%np-1, &
2198	nys:nyn,nxl:nxr) )
2199	!
2200	!-- Get dimension of building parameters
2201	CALL get_variable( id_surf, 'nbuilding_pars', &
2202	building_pars_f%pars )
2203	!
2204	!-- Read building_pars
2205	CALL get_variable( id_surf, 'building_pars', &
2206	building_pars_f%pars_xy, nxl, nxr, nys, nyn, &
2207	0, building_pars_f%np-1 )
2208	ELSE
2209	building_pars_f%from_file = .FALSE.
2210	ENDIF
2211
2212	!
2213	!-- Read albedo type and required attributes
2214	IF ( check_existence( var_names, 'albedo_type' ) ) THEN
2215	albedo_type_f%from_file = .TRUE.
2216	CALL get_attribute( id_surf, char_fill, albedo_type_f%fill, &
2217	.FALSE., 'albedo_type' )
2218
2219	ALLOCATE ( albedo_type_f%var(nys:nyn,nxl:nxr) )
2220
2221	CALL get_variable( id_surf, 'albedo_type', albedo_type_f%var, &
2222	nxl, nxr, nys, nyn )
2223	ELSE
2224	albedo_type_f%from_file = .FALSE.
2225	ENDIF
2226	!
2227	!-- Read albedo parameters and related information
2228	IF ( check_existence( var_names, 'albedo_pars' ) ) THEN
2229	albedo_pars_f%from_file = .TRUE.
2230	CALL get_attribute( id_surf, char_fill, albedo_pars_f%fill, &
2231	.FALSE., 'albedo_pars' )
2232	!
2233	!-- Inquire number of albedo parameters
2234	CALL netcdf_data_input_get_dimension_length( id_surf, &
2235	albedo_pars_f%np, &
2236	'nalbedo_pars' )
2237	!
2238	!-- Allocate dimension array and input array for albedo parameters
2239	ALLOCATE( albedo_pars_f%pars(0:albedo_pars_f%np-1) )
2240	ALLOCATE( albedo_pars_f%pars_xy(0:albedo_pars_f%np-1, &
2241	nys:nyn,nxl:nxr) )
2242	!
2243	!-- Get dimension of albedo parameters
2244	CALL get_variable( id_surf, 'nalbedo_pars', albedo_pars_f%pars )
2245
2246	CALL get_variable( id_surf, 'albedo_pars', albedo_pars_f%pars_xy, &
2247	nxl, nxr, nys, nyn, &
2248	0, albedo_pars_f%np-1 )
2249	ELSE
2250	albedo_pars_f%from_file = .FALSE.
2251	ENDIF
2252
2253	!
2254	!-- Read pavement parameters and related information
2255	IF ( check_existence( var_names, 'pavement_pars' ) ) THEN
2256	pavement_pars_f%from_file = .TRUE.
2257	CALL get_attribute( id_surf, char_fill, &
2258	pavement_pars_f%fill, &
2259	.FALSE., 'pavement_pars' )
2260	!
2261	!-- Inquire number of pavement parameters
2262	CALL netcdf_data_input_get_dimension_length( id_surf, &
2263	pavement_pars_f%np, &
2264	'npavement_pars' )
2265	!
2266	!-- Allocate dimension array and input array for pavement parameters
2267	ALLOCATE( pavement_pars_f%pars(0:pavement_pars_f%np-1) )
2268	ALLOCATE( pavement_pars_f%pars_xy(0:pavement_pars_f%np-1, &
2269	nys:nyn,nxl:nxr) )
2270	!
2271	!-- Get dimension of pavement parameters
2272	CALL get_variable( id_surf, 'npavement_pars', pavement_pars_f%pars )
2273
2274	CALL get_variable( id_surf, 'pavement_pars', pavement_pars_f%pars_xy,&
2275	nxl, nxr, nys, nyn, &
2276	0, pavement_pars_f%np-1 )
2277	ELSE
2278	pavement_pars_f%from_file = .FALSE.
2279	ENDIF
2280
2281	!
2282	!-- Read pavement subsurface parameters and related information
2283	IF ( check_existence( var_names, 'pavement_subsurface_pars' ) ) &
2284	THEN
2285	pavement_subsurface_pars_f%from_file = .TRUE.
2286	CALL get_attribute( id_surf, char_fill, &
2287	pavement_subsurface_pars_f%fill, &
2288	.FALSE., 'pavement_subsurface_pars' )
2289	!
2290	!-- Inquire number of parameters
2291	CALL netcdf_data_input_get_dimension_length( id_surf, &
2292	pavement_subsurface_pars_f%np, &
2293	'npavement_subsurface_pars' )
2294	!
2295	!-- Inquire number of soil layers
2296	CALL netcdf_data_input_get_dimension_length( id_surf, &
2297	pavement_subsurface_pars_f%nz, &
2298	'zsoil' )
2299	!
2300	!-- Allocate dimension array and input array for pavement parameters
2301	ALLOCATE( pavement_subsurface_pars_f%pars &
2302	(0:pavement_subsurface_pars_f%np-1) )
2303	ALLOCATE( pavement_subsurface_pars_f%pars_xyz &
2304	(0:pavement_subsurface_pars_f%np-1, &
2305	0:pavement_subsurface_pars_f%nz-1, &
2306	nys:nyn,nxl:nxr) )
2307	!
2308	!-- Get dimension of pavement parameters
2309	CALL get_variable( id_surf, 'npavement_subsurface_pars', &
2310	pavement_subsurface_pars_f%pars )
2311
2312	CALL get_variable( id_surf, 'pavement_subsurface_pars', &
2313	pavement_subsurface_pars_f%pars_xyz, &
2314	nxl, nxr, nys, nyn, &
2315	0, pavement_subsurface_pars_f%nz-1, &
2316	0, pavement_subsurface_pars_f%np-1 )
2317	ELSE
2318	pavement_subsurface_pars_f%from_file = .FALSE.
2319	ENDIF
2320
2321
2322	!
2323	!-- Read vegetation parameters and related information
2324	IF ( check_existence( var_names, 'vegetation_pars' ) ) THEN
2325	vegetation_pars_f%from_file = .TRUE.
2326	CALL get_attribute( id_surf, char_fill, &
2327	vegetation_pars_f%fill, &
2328	.FALSE., 'vegetation_pars' )
2329	!
2330	!-- Inquire number of vegetation parameters
2331	CALL netcdf_data_input_get_dimension_length( id_surf, &
2332	vegetation_pars_f%np, &
2333	'nvegetation_pars' )
2334	!
2335	!-- Allocate dimension array and input array for surface fractions
2336	ALLOCATE( vegetation_pars_f%pars(0:vegetation_pars_f%np-1) )
2337	ALLOCATE( vegetation_pars_f%pars_xy(0:vegetation_pars_f%np-1, &
2338	nys:nyn,nxl:nxr) )
2339	!
2340	!-- Get dimension of the parameters
2341	CALL get_variable( id_surf, 'nvegetation_pars', &
2342	vegetation_pars_f%pars )
2343
2344	CALL get_variable( id_surf, 'vegetation_pars', &
2345	vegetation_pars_f%pars_xy, nxl, nxr, nys, nyn, &
2346	0, vegetation_pars_f%np-1 )
2347	ELSE
2348	vegetation_pars_f%from_file = .FALSE.
2349	ENDIF
2350
2351	!
2352	!-- Read root parameters/distribution and related information
2353	IF ( check_existence( var_names, 'soil_pars' ) ) THEN
2354	soil_pars_f%from_file = .TRUE.
2355	CALL get_attribute( id_surf, char_fill, &
2356	soil_pars_f%fill, &
2357	.FALSE., 'soil_pars' )
2358
2359	CALL get_attribute( id_surf, char_lod, &
2360	soil_pars_f%lod, &
2361	.FALSE., 'soil_pars' )
2362
2363	!
2364	!-- Inquire number of soil parameters
2365	CALL netcdf_data_input_get_dimension_length( id_surf, &
2366	soil_pars_f%np, &
2367	'nsoil_pars' )
2368	!
2369	!-- Read parameters array
2370	ALLOCATE( soil_pars_f%pars(0:soil_pars_f%np-1) )
2371	CALL get_variable( id_surf, 'nsoil_pars', soil_pars_f%pars )
2372
2373	!
2374	!-- In case of level of detail 2, also inquire number of vertical
2375	!-- soil layers, allocate memory and read the respective dimension
2376	IF ( soil_pars_f%lod == 2 ) THEN
2377	CALL netcdf_data_input_get_dimension_length( id_surf, &
2378	soil_pars_f%nz, &
2379	'zsoil' )
2380
2381	ALLOCATE( soil_pars_f%layers(0:soil_pars_f%nz-1) )
2382	CALL get_variable( id_surf, 'zsoil', soil_pars_f%layers )
2383
2384	ENDIF
2385
2386	!
2387	!-- Read soil parameters, depending on level of detail
2388	IF ( soil_pars_f%lod == 1 ) THEN
2389	ALLOCATE( soil_pars_f%pars_xy(0:soil_pars_f%np-1, &
2390	nys:nyn,nxl:nxr) )
2391
2392	CALL get_variable( id_surf, 'soil_pars', soil_pars_f%pars_xy, &
2393	nxl, nxr, nys, nyn, 0, soil_pars_f%np-1 )
2394
2395	ELSEIF ( soil_pars_f%lod == 2 ) THEN
2396	ALLOCATE( soil_pars_f%pars_xyz(0:soil_pars_f%np-1, &
2397	0:soil_pars_f%nz-1, &
2398	nys:nyn,nxl:nxr) )
2399	CALL get_variable( id_surf, 'soil_pars', &
2400	soil_pars_f%pars_xyz, &
2401	nxl, nxr, nys, nyn, 0, soil_pars_f%nz-1, &
2402	0, soil_pars_f%np-1 )
2403
2404	ENDIF
2405	ELSE
2406	soil_pars_f%from_file = .FALSE.
2407	ENDIF
2408
2409	!
2410	!-- Read water parameters and related information
2411	IF ( check_existence( var_names, 'water_pars' ) ) THEN
2412	water_pars_f%from_file = .TRUE.
2413	CALL get_attribute( id_surf, char_fill, &
2414	water_pars_f%fill, &
2415	.FALSE., 'water_pars' )
2416	!
2417	!-- Inquire number of water parameters
2418	CALL netcdf_data_input_get_dimension_length( id_surf, &
2419	water_pars_f%np, &
2420	'nwater_pars' )
2421	!
2422	!-- Allocate dimension array and input array for water parameters
2423	ALLOCATE( water_pars_f%pars(0:water_pars_f%np-1) )
2424	ALLOCATE( water_pars_f%pars_xy(0:water_pars_f%np-1, &
2425	nys:nyn,nxl:nxr) )
2426	!
2427	!-- Get dimension of water parameters
2428	CALL get_variable( id_surf, 'nwater_pars', water_pars_f%pars )
2429
2430	CALL get_variable( id_surf, 'water_pars', water_pars_f%pars_xy, &
2431	nxl, nxr, nys, nyn, 0, water_pars_f%np-1 )
2432	ELSE
2433	water_pars_f%from_file = .FALSE.
2434	ENDIF
2435	!
2436	!-- Read root area density - parametrized vegetation
2437	IF ( check_existence( var_names, 'root_area_dens_s' ) ) THEN
2438	root_area_density_lsm_f%from_file = .TRUE.
2439	CALL get_attribute( id_surf, char_fill, &
2440	root_area_density_lsm_f%fill, &
2441	.FALSE., 'root_area_dens_s' )
2442	!
2443	!-- Obtain number of soil layers from file and allocate variable
2444	CALL netcdf_data_input_get_dimension_length( id_surf, &
2445	root_area_density_lsm_f%nz, &
2446	'zsoil' )
2447	ALLOCATE( root_area_density_lsm_f%var &
2448	(0:root_area_density_lsm_f%nz-1, &
2449	nys:nyn,nxl:nxr) )
2450
2451	!
2452	!-- Read root-area density
2453	CALL get_variable( id_surf, 'root_area_dens_s', &
2454	root_area_density_lsm_f%var, &
2455	nxl, nxr, nys, nyn, &
2456	0, root_area_density_lsm_f%nz-1 )
2457
2458	ELSE
2459	root_area_density_lsm_f%from_file = .FALSE.
2460	ENDIF
2461	!
2462	!-- Read street type and street crossing
2463	IF ( check_existence( var_names, 'street_type' ) ) THEN
2464	street_type_f%from_file = .TRUE.
2465	CALL get_attribute( id_surf, char_fill, &
2466	street_type_f%fill, .FALSE., &
2467	'street_type' )
2468
2469	ALLOCATE ( street_type_f%var(nys:nyn,nxl:nxr) )
2470
2471	CALL get_variable( id_surf, 'street_type', street_type_f%var, &
2472	nxl, nxr, nys, nyn )
2473	ELSE
2474	street_type_f%from_file = .FALSE.
2475	ENDIF
2476
2477	IF ( check_existence( var_names, 'street_crossing' ) ) THEN
2478	street_crossing_f%from_file = .TRUE.
2479	CALL get_attribute( id_surf, char_fill, &
2480	street_crossing_f%fill, .FALSE., &
2481	'street_crossing' )
2482
2483	ALLOCATE ( street_crossing_f%var(nys:nyn,nxl:nxr) )
2484
2485	CALL get_variable( id_surf, 'street_crossing', &
2486	street_crossing_f%var, nxl, nxr, nys, nyn )
2487
2488	ELSE
2489	street_crossing_f%from_file = .FALSE.
2490	ENDIF
2491	!
2492	!-- Still missing: root_resolved and building_surface_pars.
2493	!-- Will be implemented as soon as they are available.
2494
2495	!
2496	!-- Finally, close input file
2497	CALL close_input_file( id_surf )
2498	#endif
2499	!
2500	!-- End of CPU measurement
2501	CALL cpu_log( log_point_s(82), 'NetCDF input', 'stop' )
2502	!
2503	!-- Exchange ghost points for surface variables. Therefore, resize
2504	!-- variables.
2505	IF ( albedo_type_f%from_file ) THEN
2506	CALL resize_array_2d_int8( albedo_type_f%var, nys, nyn, nxl, nxr )
2507	CALL exchange_horiz_2d_byte( albedo_type_f%var, nys, nyn, nxl, nxr, &
2508	nbgp )
2509	ENDIF
2510	IF ( pavement_type_f%from_file ) THEN
2511	CALL resize_array_2d_int8( pavement_type_f%var, nys, nyn, nxl, nxr )
2512	CALL exchange_horiz_2d_byte( pavement_type_f%var, nys, nyn, nxl, nxr,&
2513	nbgp )
2514	ENDIF
2515	IF ( soil_type_f%from_file .AND. ALLOCATED( soil_type_f%var_2d ) ) THEN
2516	CALL resize_array_2d_int8( soil_type_f%var_2d, nys, nyn, nxl, nxr )
2517	CALL exchange_horiz_2d_byte( soil_type_f%var_2d, nys, nyn, nxl, nxr, &
2518	nbgp )
2519	ENDIF
2520	IF ( vegetation_type_f%from_file ) THEN
2521	CALL resize_array_2d_int8( vegetation_type_f%var, nys, nyn, nxl, nxr )
2522	CALL exchange_horiz_2d_byte( vegetation_type_f%var, nys, nyn, nxl, &
2523	nxr, nbgp )
2524	ENDIF
2525	IF ( water_type_f%from_file ) THEN
2526	CALL resize_array_2d_int8( water_type_f%var, nys, nyn, nxl, nxr )
2527	CALL exchange_horiz_2d_byte( water_type_f%var, nys, nyn, nxl, nxr, &
2528	nbgp )
2529	ENDIF
2530	!
2531	!-- Exchange ghost points for 3/4-D variables. For the sake of simplicity,
2532	!-- loop further dimensions to use 2D exchange routines. Unfortunately this
2533	!-- is necessary, else new MPI-data types need to be introduced just for
2534	!-- 2 variables.
2535	IF ( soil_type_f%from_file .AND. ALLOCATED( soil_type_f%var_3d ) ) &
2536	THEN
2537	CALL resize_array_3d_int8( soil_type_f%var_3d, 0, nz_soil, &
2538	nys, nyn, nxl, nxr )
2539	DO k = 0, nz_soil
2540	CALL exchange_horiz_2d_int( &
2541	soil_type_f%var_3d(k,:,:), nys, nyn, nxl, nxr, nbgp )
2542	ENDDO
2543	ENDIF
2544
2545	IF ( surface_fraction_f%from_file ) THEN
2546	CALL resize_array_3d_real( surface_fraction_f%frac, &
2547	0, surface_fraction_f%nf-1, &
2548	nys, nyn, nxl, nxr )
2549	DO k = 0, surface_fraction_f%nf-1
2550	CALL exchange_horiz_2d( surface_fraction_f%frac(k,:,:), nbgp )
2551	ENDDO
2552	ENDIF
2553
2554	IF ( building_pars_f%from_file ) THEN
2555	CALL resize_array_3d_real( building_pars_f%pars_xy, &
2556	0, building_pars_f%np-1, &
2557	nys, nyn, nxl, nxr )
2558	DO k = 0, building_pars_f%np-1
2559	CALL exchange_horiz_2d( building_pars_f%pars_xy(k,:,:), nbgp )
2560	ENDDO
2561	ENDIF
2562
2563	IF ( albedo_pars_f%from_file ) THEN
2564	CALL resize_array_3d_real( albedo_pars_f%pars_xy, &
2565	0, albedo_pars_f%np-1, &
2566	nys, nyn, nxl, nxr )
2567	DO k = 0, albedo_pars_f%np-1
2568	CALL exchange_horiz_2d( albedo_pars_f%pars_xy(k,:,:), nbgp )
2569	ENDDO
2570	ENDIF
2571
2572	IF ( pavement_pars_f%from_file ) THEN
2573	CALL resize_array_3d_real( pavement_pars_f%pars_xy, &
2574	0, pavement_pars_f%np-1, &
2575	nys, nyn, nxl, nxr )
2576	DO k = 0, pavement_pars_f%np-1
2577	CALL exchange_horiz_2d( pavement_pars_f%pars_xy(k,:,:), nbgp )
2578	ENDDO
2579	ENDIF
2580
2581	IF ( vegetation_pars_f%from_file ) THEN
2582	CALL resize_array_3d_real( vegetation_pars_f%pars_xy, &
2583	0, vegetation_pars_f%np-1, &
2584	nys, nyn, nxl, nxr )
2585	DO k = 0, vegetation_pars_f%np-1
2586	CALL exchange_horiz_2d( vegetation_pars_f%pars_xy(k,:,:), nbgp )
2587	ENDDO
2588	ENDIF
2589
2590	IF ( water_pars_f%from_file ) THEN
2591	CALL resize_array_3d_real( water_pars_f%pars_xy, &
2592	0, water_pars_f%np-1, &
2593	nys, nyn, nxl, nxr )
2594	DO k = 0, water_pars_f%np-1
2595	CALL exchange_horiz_2d( water_pars_f%pars_xy(k,:,:), nbgp )
2596	ENDDO
2597	ENDIF
2598
2599	IF ( root_area_density_lsm_f%from_file ) THEN
2600	CALL resize_array_3d_real( root_area_density_lsm_f%var, &
2601	0, root_area_density_lsm_f%nz-1, &
2602	nys, nyn, nxl, nxr )
2603	DO k = 0, root_area_density_lsm_f%nz-1
2604	CALL exchange_horiz_2d( root_area_density_lsm_f%var(k,:,:), nbgp )
2605	ENDDO
2606	ENDIF
2607
2608	IF ( soil_pars_f%from_file ) THEN
2609	IF ( soil_pars_f%lod == 1 ) THEN
2610
2611	CALL resize_array_3d_real( soil_pars_f%pars_xy, &
2612	0, soil_pars_f%np-1, &
2613	nys, nyn, nxl, nxr )
2614	DO k = 0, soil_pars_f%np-1
2615	CALL exchange_horiz_2d( soil_pars_f%pars_xy(k,:,:), nbgp )
2616	ENDDO
2617
2618	ELSEIF ( soil_pars_f%lod == 2 ) THEN
2619	CALL resize_array_4d_real( soil_pars_f%pars_xyz, &
2620	0, soil_pars_f%np-1, &
2621	0, soil_pars_f%nz-1, &
2622	nys, nyn, nxl, nxr )
2623
2624	DO k2 = 0, soil_pars_f%nz-1
2625	DO k = 0, soil_pars_f%np-1
2626	CALL exchange_horiz_2d( soil_pars_f%pars_xyz(k,k2,:,:), &
2627	nbgp )
2628	ENDDO
2629	ENDDO
2630	ENDIF
2631	ENDIF
2632
2633	IF ( pavement_subsurface_pars_f%from_file ) THEN
2634	CALL resize_array_4d_real( pavement_subsurface_pars_f%pars_xyz, &
2635	0, pavement_subsurface_pars_f%np-1, &
2636	0, pavement_subsurface_pars_f%nz-1, &
2637	nys, nyn, nxl, nxr )
2638
2639	DO k2 = 0, pavement_subsurface_pars_f%nz-1
2640	DO k = 0, pavement_subsurface_pars_f%np-1
2641	CALL exchange_horiz_2d( &
2642	pavement_subsurface_pars_f%pars_xyz(k,k2,:,:), nbgp )
2643	ENDDO
2644	ENDDO
2645	ENDIF
2646
2647	END SUBROUTINE netcdf_data_input_surface_data
2648
2649	!------------------------------------------------------------------------------!
2650	! Description:
2651	! ------------
2652	!> Reads uvem lookup table information.
2653	!------------------------------------------------------------------------------!
2654	SUBROUTINE netcdf_data_input_uvem
2655
2656	USE indices, &
2657	ONLY: nxl, nxr, nyn, nys
2658
2659	IMPLICIT NONE
2660
2661	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names !< variable names in static input file
2662
2663
2664	INTEGER(iwp) :: id_uvem !< NetCDF id of uvem lookup table input file
2665	INTEGER(iwp) :: nli = 35 !< dimension length of lookup table in x
2666	INTEGER(iwp) :: nlj = 9 !< dimension length of lookup table in y
2667	INTEGER(iwp) :: nlk = 90 !< dimension length of lookup table in z
2668	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
2669	!
2670	!-- Input via uv exposure model lookup table input
2671	IF ( input_pids_uvem ) THEN
2672
2673	#if defined ( __netcdf )
2674	!
2675	!-- Open file in read-only mode
2676	CALL open_read_file( TRIM( input_file_uvem ) // &
2677	TRIM( coupling_char ), id_uvem )
2678	!
2679	!-- At first, inquire all variable names.
2680	!-- This will be used to check whether an input variable exist or not.
2681	CALL inquire_num_variables( id_uvem, num_vars )
2682	!
2683	!-- Allocate memory to store variable names and inquire them.
2684	ALLOCATE( var_names(1:num_vars) )
2685	CALL inquire_variable_names( id_uvem, var_names )
2686	!
2687	!-- uvem integration
2688	IF ( check_existence( var_names, 'int_factors' ) ) THEN
2689	uvem_integration_f%from_file = .TRUE.
2690	!
2691	!-- Input 2D uvem integration.
2692	ALLOCATE ( uvem_integration_f%var(0:nlj,0:nli) )
2693
2694	CALL get_variable( id_uvem, 'int_factors', uvem_integration_f%var, 0, nli, 0, nlj )
2695	ELSE
2696	uvem_integration_f%from_file = .FALSE.
2697	ENDIF
2698	!
2699	!-- uvem irradiance
2700	IF ( check_existence( var_names, 'irradiance' ) ) THEN
2701	uvem_irradiance_f%from_file = .TRUE.
2702	!
2703	!-- Input 2D uvem irradiance.
2704	ALLOCATE ( uvem_irradiance_f%var(0:nlk, 0:2) )
2705
2706	CALL get_variable( id_uvem, 'irradiance', uvem_irradiance_f%var, 0, 2, 0, nlk )
2707	ELSE
2708	uvem_irradiance_f%from_file = .FALSE.
2709	ENDIF
2710	!
2711	!-- uvem porjection areas
2712	IF ( check_existence( var_names, 'projarea' ) ) THEN
2713	uvem_projarea_f%from_file = .TRUE.
2714	!
2715	!-- Input 3D uvem projection area (human geometgry)
2716	ALLOCATE ( uvem_projarea_f%var(0:2,0:nlj,0:nli) )
2717
2718	CALL get_variable( id_uvem, 'projarea', uvem_projarea_f%var, 0, nli, 0, nlj, 0, 2 )
2719	ELSE
2720	uvem_projarea_f%from_file = .FALSE.
2721	ENDIF
2722	!
2723	!-- uvem radiance
2724	IF ( check_existence( var_names, 'radiance' ) ) THEN
2725	uvem_radiance_f%from_file = .TRUE.
2726	!
2727	!-- Input 3D uvem radiance
2728	ALLOCATE ( uvem_radiance_f%var(0:nlk,0:nlj,0:nli) )
2729
2730	CALL get_variable( id_uvem, 'radiance', uvem_radiance_f%var, 0, nli, 0, nlj, 0, nlk )
2731	ELSE
2732	uvem_radiance_f%from_file = .FALSE.
2733	ENDIF
2734	!
2735	!-- Read building obstruction
2736	IF ( check_existence( var_names, 'obstruction' ) ) THEN
2737	building_obstruction_full%from_file = .TRUE.
2738	!-- Input 3D uvem building obstruction
2739	ALLOCATE ( building_obstruction_full%var_3d(0:44,0:2,0:2) )
2740	CALL get_variable( id_uvem, 'obstruction', building_obstruction_full%var_3d,0, 2, 0, 2, 0, 44 )
2741	ELSE
2742	building_obstruction_full%from_file = .FALSE.
2743	ENDIF
2744	!
2745	IF ( check_existence( var_names, 'obstruction' ) ) THEN
2746	building_obstruction_f%from_file = .TRUE.
2747	!
2748	!-- Input 3D uvem building obstruction
2749	ALLOCATE ( building_obstruction_f%var_3d(0:44,nys:nyn,nxl:nxr) )
2750	!
2751	CALL get_variable( id_uvem, 'obstruction', building_obstruction_f%var_3d, &
2752	nxl, nxr, nys, nyn, 0, 44 )
2753	ELSE
2754	building_obstruction_f%from_file = .FALSE.
2755	ENDIF
2756	!
2757	!-- Close uvem lookup table input file
2758	CALL close_input_file( id_uvem )
2759	#else
2760	CONTINUE
2761	#endif
2762	ENDIF
2763	END SUBROUTINE netcdf_data_input_uvem
2764
2765	!------------------------------------------------------------------------------!
2766	! Description:
2767	! ------------
2768	!> Reads orography and building information.
2769	!------------------------------------------------------------------------------!
2770	SUBROUTINE netcdf_data_input_topo
2771
2772	USE control_parameters, &
2773	ONLY: message_string, topography
2774
2775	USE grid_variables, &
2776	ONLY: dx, dy
2777
2778	USE indices, &
2779	ONLY: nbgp, nx, nxl, nxr, ny, nyn, nys, nzb
2780
2781
2782	IMPLICIT NONE
2783
2784	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names !< variable names in static input file
2785
2786
2787	INTEGER(iwp) :: i !< running index along x-direction
2788	INTEGER(iwp) :: ii !< running index for IO blocks
2789	INTEGER(iwp) :: id_topo !< NetCDF id of topograhy input file
2790	INTEGER(iwp) :: j !< running index along y-direction
2791	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
2792	INTEGER(iwp) :: skip_n_rows !< counting variable to skip rows while reading topography file
2793
2794	REAL(wp) :: dum !< dummy variable to skip columns while reading topography file
2795	!
2796	!-- CPU measurement
2797	CALL cpu_log( log_point_s(83), 'NetCDF/ASCII input topo', 'start' )
2798
2799	!
2800	!-- Input via palm-input data standard
2801	IF ( input_pids_static ) THEN
2802	#if defined ( __netcdf )
2803	!
2804	!-- Open file in read-only mode
2805	CALL open_read_file( TRIM( input_file_static ) // &
2806	TRIM( coupling_char ), id_topo )
2807	!
2808	!-- At first, inquire all variable names.
2809	!-- This will be used to check whether an input variable exist
2810	!-- or not.
2811	CALL inquire_num_variables( id_topo, num_vars )
2812	!
2813	!-- Allocate memory to store variable names and inquire them.
2814	ALLOCATE( var_names(1:num_vars) )
2815	CALL inquire_variable_names( id_topo, var_names )
2816	!
2817	!-- Read x, y - dimensions. Only required for consistency checks.
2818	CALL netcdf_data_input_get_dimension_length( id_topo, dim_static%nx, 'x' )
2819	CALL netcdf_data_input_get_dimension_length( id_topo, dim_static%ny, 'y' )
2820	ALLOCATE( dim_static%x(0:dim_static%nx-1) )
2821	ALLOCATE( dim_static%y(0:dim_static%ny-1) )
2822	CALL get_variable( id_topo, 'x', dim_static%x )
2823	CALL get_variable( id_topo, 'y', dim_static%y )
2824	!
2825	!-- Check whether dimension size in input file matches the model dimensions
2826	IF ( dim_static%nx-1 /= nx .OR. dim_static%ny-1 /= ny ) THEN
2827	message_string = 'Static input file: horizontal dimension in ' // &
2828	'x- and/or y-direction ' // &
2829	'do not match the respective model dimension'
2830	CALL message( 'netcdf_data_input_mod', 'PA0548', 1, 2, 0, 6, 0 )
2831	ENDIF
2832	!
2833	!-- Check if grid spacing of provided input data matches the respective
2834	!-- grid spacing in the model.
2835	IF ( ABS( dim_static%x(1) - dim_static%x(0) - dx ) > 10E-6_wp .OR. &
2836	ABS( dim_static%y(1) - dim_static%y(0) - dy ) > 10E-6_wp ) THEN
2837	message_string = 'Static input file: horizontal grid spacing ' // &
2838	'in x- and/or y-direction ' // &
2839	'do not match the respective model grid spacing.'
2840	CALL message( 'netcdf_data_input_mod', 'PA0549', 1, 2, 0, 6, 0 )
2841	ENDIF
2842	!
2843	!-- Terrain height. First, get variable-related _FillValue attribute
2844	IF ( check_existence( var_names, 'zt' ) ) THEN
2845	terrain_height_f%from_file = .TRUE.
2846	CALL get_attribute( id_topo, char_fill, terrain_height_f%fill, &
2847	.FALSE., 'zt' )
2848	!
2849	!-- Input 2D terrain height.
2850	ALLOCATE ( terrain_height_f%var(nys:nyn,nxl:nxr) )
2851
2852	CALL get_variable( id_topo, 'zt', terrain_height_f%var, &
2853	nxl, nxr, nys, nyn )
2854
2855	ELSE
2856	terrain_height_f%from_file = .FALSE.
2857	ENDIF
2858
2859	!
2860	!-- Read building height. First, read its _FillValue attribute,
2861	!-- as well as lod attribute
2862	buildings_f%from_file = .FALSE.
2863	IF ( check_existence( var_names, 'buildings_2d' ) ) THEN
2864	buildings_f%from_file = .TRUE.
2865	CALL get_attribute( id_topo, char_lod, buildings_f%lod, &
2866	.FALSE., 'buildings_2d' )
2867
2868	CALL get_attribute( id_topo, char_fill, buildings_f%fill1, &
2869	.FALSE., 'buildings_2d' )
2870
2871	!
2872	!-- Read 2D buildings
2873	IF ( buildings_f%lod == 1 ) THEN
2874	ALLOCATE ( buildings_f%var_2d(nys:nyn,nxl:nxr) )
2875
2876	CALL get_variable( id_topo, 'buildings_2d', &
2877	buildings_f%var_2d, &
2878	nxl, nxr, nys, nyn )
2879	ELSE
2880	message_string = 'NetCDF attribute lod ' // &
2881	'(level of detail) is not set ' // &
2882	'properly for buildings_2d.'
2883	CALL message( 'netcdf_data_input_mod', 'PA0540', &
2884	1, 2, 0, 6, 0 )
2885	ENDIF
2886	ENDIF
2887	!
2888	!-- If available, also read 3D building information. If both are
2889	!-- available, use 3D information.
2890	IF ( check_existence( var_names, 'buildings_3d' ) ) THEN
2891	buildings_f%from_file = .TRUE.
2892	CALL get_attribute( id_topo, char_lod, buildings_f%lod, &
2893	.FALSE., 'buildings_3d' )
2894
2895	CALL get_attribute( id_topo, char_fill, buildings_f%fill2, &
2896	.FALSE., 'buildings_3d' )
2897
2898	CALL netcdf_data_input_get_dimension_length( id_topo, &
2899	buildings_f%nz, 'z' )
2900	!
2901	!-- Read 3D buildings
2902	IF ( buildings_f%lod == 2 ) THEN
2903	ALLOCATE( buildings_f%z(nzb:buildings_f%nz-1) )
2904	CALL get_variable( id_topo, 'z', buildings_f%z )
2905
2906	ALLOCATE( buildings_f%var_3d(nzb:buildings_f%nz-1, &
2907	nys:nyn,nxl:nxr) )
2908	buildings_f%var_3d = 0
2909
2910	CALL get_variable( id_topo, 'buildings_3d', &
2911	buildings_f%var_3d, &
2912	nxl, nxr, nys, nyn, 0, buildings_f%nz-1 )
2913	ELSE
2914	message_string = 'NetCDF attribute lod ' // &
2915	'(level of detail) is not set ' // &
2916	'properly for buildings_3d.'
2917	CALL message( 'netcdf_data_input_mod', 'PA0541', &
2918	1, 2, 0, 6, 0 )
2919	ENDIF
2920	ENDIF
2921	!
2922	!-- Read building IDs and its FillValue attribute. Further required
2923	!-- for mapping buildings on top of orography.
2924	IF ( check_existence( var_names, 'building_id' ) ) THEN
2925	building_id_f%from_file = .TRUE.
2926	CALL get_attribute( id_topo, char_fill, &
2927	building_id_f%fill, .FALSE., &
2928	'building_id' )
2929
2930	ALLOCATE ( building_id_f%var(nys:nyn,nxl:nxr) )
2931
2932	CALL get_variable( id_topo, 'building_id', building_id_f%var, &
2933	nxl, nxr, nys, nyn )
2934	ELSE
2935	building_id_f%from_file = .FALSE.
2936	ENDIF
2937	!
2938	!-- Read building_type and required attributes.
2939	IF ( check_existence( var_names, 'building_type' ) ) THEN
2940	building_type_f%from_file = .TRUE.
2941	CALL get_attribute( id_topo, char_fill, &
2942	building_type_f%fill, .FALSE., &
2943	'building_type' )
2944
2945	ALLOCATE ( building_type_f%var(nys:nyn,nxl:nxr) )
2946
2947	CALL get_variable( id_topo, 'building_type', building_type_f%var, &
2948	nxl, nxr, nys, nyn )
2949
2950	ELSE
2951	building_type_f%from_file = .FALSE.
2952	ENDIF
2953	!
2954	!-- Close topography input file
2955	CALL close_input_file( id_topo )
2956	#else
2957	CONTINUE
2958	#endif
2959	!
2960	!-- ASCII input
2961	ELSEIF ( TRIM( topography ) == 'read_from_file' ) THEN
2962
2963	DO ii = 0, io_blocks-1
2964	IF ( ii == io_group ) THEN
2965
2966	OPEN( 90, FILE='TOPOGRAPHY_DATA'//TRIM( coupling_char ), &
2967	STATUS='OLD', FORM='FORMATTED', ERR=10 )
2968	!
2969	!-- Read topography PE-wise. Rows are read from nyn to nys, columns
2970	!-- are read from nxl to nxr. At first, ny-nyn rows need to be skipped.
2971	skip_n_rows = 0
2972	DO WHILE ( skip_n_rows < ny - nyn )
2973	READ( 90, * )
2974	skip_n_rows = skip_n_rows + 1
2975	ENDDO
2976	!
2977	!-- Read data from nyn to nys and nxl to nxr. Therefore, skip
2978	!-- column until nxl-1 is reached
2979	ALLOCATE ( buildings_f%var_2d(nys:nyn,nxl:nxr) )
2980	DO j = nyn, nys, -1
2981	READ( 90, *, ERR=11, END=11 ) &
2982	( dum, i = 0, nxl-1 ), &
2983	( buildings_f%var_2d(j,i), i = nxl, nxr )
2984	ENDDO
2985
2986	GOTO 12
2987
2988	10 message_string = 'file TOPOGRAPHY_DATA'// &
2989	TRIM( coupling_char )// ' does not exist'
2990	CALL message( 'netcdf_data_input_mod', 'PA0208', 1, 2, 0, 6, 0 )
2991
2992	11 message_string = 'errors in file TOPOGRAPHY_DATA'// &
2993	TRIM( coupling_char )
2994	CALL message( 'netcdf_data_input_mod', 'PA0209', 2, 2, 0, 6, 0 )
2995
2996	12 CLOSE( 90 )
2997	buildings_f%from_file = .TRUE.
2998
2999	ENDIF
3000	#if defined( __parallel )
3001	CALL MPI_BARRIER( comm2d, ierr )
3002	#endif
3003	ENDDO
3004
3005	ENDIF
3006	!
3007	!-- End of CPU measurement
3008	CALL cpu_log( log_point_s(83), 'NetCDF/ASCII input topo', 'stop' )
3009	!
3010	!-- Check for minimum requirement to setup building topography. If buildings
3011	!-- are provided, also an ID and a type are required.
3012	!-- Note, doing this check in check_parameters
3013	!-- will be too late (data will be used for grid inititialization before).
3014	IF ( input_pids_static ) THEN
3015	IF ( buildings_f%from_file .AND. &
3016	.NOT. building_id_f%from_file ) THEN
3017	message_string = 'If building heights are prescribed in ' // &
3018	'static input file, also an ID is required.'
3019	CALL message( 'netcdf_data_input_mod', 'PA0542', 1, 2, 0, 6, 0 )
3020	ENDIF
3021	ENDIF
3022	!
3023	!-- In case no terrain height is provided by static input file, allocate
3024	!-- array nevertheless and set terrain height to 0, which simplifies
3025	!-- topography initialization.
3026	IF ( .NOT. terrain_height_f%from_file ) THEN
3027	ALLOCATE ( terrain_height_f%var(nys:nyn,nxl:nxr) )
3028	terrain_height_f%var = 0.0_wp
3029	ENDIF
3030	!
3031	!-- Finally, exchange 1 ghost point for building ID and type.
3032	!-- In case of non-cyclic boundary conditions set Neumann conditions at the
3033	!-- lateral boundaries.
3034	IF ( building_id_f%from_file ) THEN
3035	CALL resize_array_2d_int32( building_id_f%var, nys, nyn, nxl, nxr )
3036	CALL exchange_horiz_2d_int( building_id_f%var, nys, nyn, nxl, nxr, &
3037	nbgp )
3038	ENDIF
3039
3040	IF ( building_type_f%from_file ) THEN
3041	CALL resize_array_2d_int8( building_type_f%var, nys, nyn, nxl, nxr )
3042	CALL exchange_horiz_2d_byte( building_type_f%var, nys, nyn, nxl, nxr, &
3043	nbgp )
3044	ENDIF
3045
3046	END SUBROUTINE netcdf_data_input_topo
3047
3048	!------------------------------------------------------------------------------!
3049	! Description:
3050	! ------------
3051	!> Reads initialization data of u, v, w, pt, q, geostrophic wind components,
3052	!> as well as soil moisture and soil temperature, derived from larger-scale
3053	!> model (COSMO) by Inifor.
3054	!------------------------------------------------------------------------------!
3055	SUBROUTINE netcdf_data_input_init_3d
3056
3057	USE arrays_3d, &
3058	ONLY: q, pt, u, v, w, zu, zw
3059
3060	USE control_parameters, &
3061	ONLY: air_chemistry, bc_lr_cyc, bc_ns_cyc, humidity, &
3062	message_string, neutral
3063
3064	USE indices, &
3065	ONLY: nx, nxl, nxlu, nxr, ny, nyn, nys, nysv, nzb, nz, nzt
3066
3067	IMPLICIT NONE
3068
3069	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names
3070
3071	LOGICAL :: dynamic_3d = .TRUE. !< flag indicating that 3D data is read from dynamic file
3072
3073	INTEGER(iwp) :: id_dynamic !< NetCDF id of dynamic input file
3074	INTEGER(iwp) :: n !< running index for chemistry variables
3075	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
3076
3077	LOGICAL :: check_passed !< flag indicating if a check passed
3078
3079	!
3080	!-- Skip routine if no input file with dynamic input data is available.
3081	IF ( .NOT. input_pids_dynamic ) RETURN
3082	!
3083	!-- Please note, Inifor is designed to provide initial data for u and v for
3084	!-- the prognostic grid points in case of lateral Dirichlet conditions.
3085	!-- This means that Inifor provides data from nxlu:nxr (for u) and
3086	!-- from nysv:nyn (for v) at the left and south domain boundary, respectively.
3087	!-- However, as work-around for the moment, PALM will run with cyclic
3088	!-- conditions and will be initialized with data provided by Inifor
3089	!-- boundaries in case of Dirichlet.
3090	!-- Hence, simply set set nxlu/nysv to 1 (will be reset to its original value
3091	!-- at the end of this routine.
3092	IF ( bc_lr_cyc .AND. nxl == 0 ) nxlu = 1
3093	IF ( bc_ns_cyc .AND. nys == 0 ) nysv = 1
3094
3095	!
3096	!-- CPU measurement
3097	CALL cpu_log( log_point_s(85), 'NetCDF input init', 'start' )
3098
3099	#if defined ( __netcdf )
3100	!
3101	!-- Open file in read-only mode
3102	CALL open_read_file( TRIM( input_file_dynamic ) // &
3103	TRIM( coupling_char ), id_dynamic )
3104
3105	!
3106	!-- At first, inquire all variable names.
3107	CALL inquire_num_variables( id_dynamic, num_vars )
3108	!
3109	!-- Allocate memory to store variable names.
3110	ALLOCATE( var_names(1:num_vars) )
3111	CALL inquire_variable_names( id_dynamic, var_names )
3112	!
3113	!-- Read vertical dimension of scalar und w grid.
3114	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nzu, 'z' )
3115	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nzw, 'zw' )
3116	!
3117	!-- Read also the horizontal dimensions. These are used just used fo
3118	!-- checking the compatibility with the PALM grid before reading.
3119	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nx, 'x' )
3120	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nxu, 'xu' )
3121	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%ny, 'y' )
3122	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nyv, 'yv' )
3123
3124	!
3125	!-- Check for correct horizontal and vertical dimension. Please note,
3126	!-- checks are performed directly here and not called from
3127	!-- check_parameters as some varialbes are still not allocated there.
3128	!-- Moreover, please note, u- and v-grid has 1 grid point less on
3129	!-- Inifor grid.
3130	IF ( init_3d%nx-1 /= nx .OR. init_3d%nxu-1 /= nx - 1 .OR. &
3131	init_3d%ny-1 /= ny .OR. init_3d%nyv-1 /= ny - 1 ) THEN
3132	message_string = 'Number of inifor horizontal grid points '// &
3133	'does not match the number of numeric grid '// &
3134	'points.'
3135	CALL message( 'netcdf_data_input_mod', 'PA0543', 1, 2, 0, 6, 0 )
3136	ENDIF
3137
3138	IF ( init_3d%nzu /= nz ) THEN
3139	message_string = 'Number of inifor vertical grid points ' // &
3140	'does not match the number of numeric grid '// &
3141	'points.'
3142	CALL message( 'netcdf_data_input_mod', 'PA0543', 1, 2, 0, 6, 0 )
3143	ENDIF
3144	!
3145	!-- Read vertical dimensions. Later, these are required for eventual
3146	!-- inter- and extrapolations of the initialization data.
3147	IF ( check_existence( var_names, 'z' ) ) THEN
3148	ALLOCATE( init_3d%zu_atmos(1:init_3d%nzu) )
3149	CALL get_variable( id_dynamic, 'z', init_3d%zu_atmos )
3150	ENDIF
3151	IF ( check_existence( var_names, 'zw' ) ) THEN
3152	ALLOCATE( init_3d%zw_atmos(1:init_3d%nzw) )
3153	CALL get_variable( id_dynamic, 'zw', init_3d%zw_atmos )
3154	ENDIF
3155	!
3156	!-- Check for consistency between vertical coordinates in dynamic
3157	!-- driver and numeric grid.
3158	!-- Please note, depending on compiler options both may be
3159	!-- equal up to a certain threshold, and differences between
3160	!-- the numeric grid and vertical coordinate in the driver can built-
3161	!-- up to 10E-1-10E-0 m. For this reason, the check is performed not
3162	!-- for exactly matching values.
3163	IF ( ANY( ABS( zu(1:nzt) - init_3d%zu_atmos(1:init_3d%nzu) ) &
3164	> 10E-1 ) .OR. &
3165	ANY( ABS( zw(1:nzt-1) - init_3d%zw_atmos(1:init_3d%nzw) ) &
3166	> 10E-1 ) ) THEN
3167	message_string = 'Vertical grid in dynamic driver does not '// &
3168	'match the numeric grid.'
3169	CALL message( 'netcdf_data_input_mod', 'PA0543', 1, 2, 0, 6, 0 )
3170	ENDIF
3171	!
3172	!-- Read initial geostrophic wind components at
3173	!-- t = 0 (index 1 in file).
3174	IF ( check_existence( var_names, 'ls_forcing_ug' ) ) THEN
3175	ALLOCATE( init_3d%ug_init(nzb:nzt+1) )
3176	init_3d%ug_init = 0.0_wp
3177
3178	CALL get_variable_pr( id_dynamic, 'ls_forcing_ug', 1, &
3179	init_3d%ug_init(1:nzt) )
3180	!
3181	!-- Set top-boundary condition (Neumann)
3182	init_3d%ug_init(nzt+1) = init_3d%ug_init(nzt)
3183
3184	init_3d%from_file_ug = .TRUE.
3185	ELSE
3186	init_3d%from_file_ug = .FALSE.
3187	ENDIF
3188	IF ( check_existence( var_names, 'ls_forcing_vg' ) ) THEN
3189	ALLOCATE( init_3d%vg_init(nzb:nzt+1) )
3190	init_3d%vg_init = 0.0_wp
3191
3192	CALL get_variable_pr( id_dynamic, 'ls_forcing_vg', 1, &
3193	init_3d%vg_init(1:nzt) )
3194	!
3195	!-- Set top-boundary condition (Neumann)
3196	init_3d%vg_init(nzt+1) = init_3d%vg_init(nzt)
3197
3198	init_3d%from_file_vg = .TRUE.
3199	ELSE
3200	init_3d%from_file_vg = .FALSE.
3201	ENDIF
3202	!
3203	!-- Read inital 3D data of u, v, w, pt and q,
3204	!-- derived from COSMO model. Read PE-wise yz-slices.
3205	!-- Please note, the u-, v- and w-component are defined on different
3206	!-- grids with one element less in the x-, y-,
3207	!-- and z-direction, respectively. Hence, reading is subdivided
3208	!-- into separate loops.
3209	!-- Read u-component
3210	IF ( check_existence( var_names, 'init_atmosphere_u' ) ) THEN
3211	!
3212	!-- Read attributes for the fill value and level-of-detail
3213	CALL get_attribute( id_dynamic, char_fill, init_3d%fill_u, &
3214	.FALSE., 'init_atmosphere_u' )
3215	CALL get_attribute( id_dynamic, char_lod, init_3d%lod_u, &
3216	.FALSE., 'init_atmosphere_u' )
3217	!
3218	!-- level-of-detail 1 - read initialization profile
3219	IF ( init_3d%lod_u == 1 ) THEN
3220	ALLOCATE( init_3d%u_init(nzb:nzt+1) )
3221	init_3d%u_init = 0.0_wp
3222
3223	CALL get_variable( id_dynamic, 'init_atmosphere_u', &
3224	init_3d%u_init(nzb+1:nzt) )
3225	!
3226	!-- Set top-boundary condition (Neumann)
3227	init_3d%u_init(nzt+1) = init_3d%u_init(nzt)
3228	!
3229	!-- level-of-detail 2 - read 3D initialization data
3230	ELSEIF ( init_3d%lod_u == 2 ) THEN
3231	CALL get_variable( id_dynamic, 'init_atmosphere_u', &
3232	u(nzb+1:nzt,nys:nyn,nxlu:nxr), &
3233	nxlu, nys+1, nzb+1, &
3234	nxr-nxlu+1, nyn-nys+1, init_3d%nzu, &
3235	dynamic_3d )
3236	!
3237	!-- Set value at leftmost model grid point nxl = 0. This is because
3238	!-- Inifor provides data only from 1:nx-1 since it assumes non-cyclic
3239	!-- conditions.
3240	IF ( nxl == 0 ) &
3241	u(nzb+1:nzt,nys:nyn,nxl) = u(nzb+1:nzt,nys:nyn,nxlu)
3242	!
3243	!-- Set bottom and top-boundary
3244	u(nzb,:,:) = u(nzb+1,:,:)
3245	u(nzt+1,:,:) = u(nzt,:,:)
3246
3247	ENDIF
3248	init_3d%from_file_u = .TRUE.
3249	ELSE
3250	message_string = 'Missing initial data for u-component'
3251	CALL message( 'netcdf_data_input_mod', 'PA0544', 1, 2, 0, 6, 0 )
3252	ENDIF
3253	!
3254	!-- Read v-component
3255	IF ( check_existence( var_names, 'init_atmosphere_v' ) ) THEN
3256	!
3257	!-- Read attributes for the fill value and level-of-detail
3258	CALL get_attribute( id_dynamic, char_fill, init_3d%fill_v, &
3259	.FALSE., 'init_atmosphere_v' )
3260	CALL get_attribute( id_dynamic, char_lod, init_3d%lod_v, &
3261	.FALSE., 'init_atmosphere_v' )
3262	!
3263	!-- level-of-detail 1 - read initialization profile
3264	IF ( init_3d%lod_v == 1 ) THEN
3265	ALLOCATE( init_3d%v_init(nzb:nzt+1) )
3266	init_3d%v_init = 0.0_wp
3267
3268	CALL get_variable( id_dynamic, 'init_atmosphere_v', &
3269	init_3d%v_init(nzb+1:nzt) )
3270	!
3271	!-- Set top-boundary condition (Neumann)
3272	init_3d%v_init(nzt+1) = init_3d%v_init(nzt)
3273	!
3274	!-- level-of-detail 2 - read 3D initialization data
3275	ELSEIF ( init_3d%lod_v == 2 ) THEN
3276
3277	CALL get_variable( id_dynamic, 'init_atmosphere_v', &
3278	v(nzb+1:nzt,nysv:nyn,nxl:nxr), &
3279	nxl+1, nysv, nzb+1, &
3280	nxr-nxl+1, nyn-nysv+1, init_3d%nzu, &
3281	dynamic_3d )
3282	!
3283	!-- Set value at southmost model grid point nys = 0. This is because
3284	!-- Inifor provides data only from 1:ny-1 since it assumes non-cyclic
3285	!-- conditions.
3286	IF ( nys == 0 ) &
3287	v(nzb+1:nzt,nys,nxl:nxr) = v(nzb+1:nzt,nysv,nxl:nxr)
3288	!
3289	!-- Set bottom and top-boundary
3290	v(nzb,:,:) = v(nzb+1,:,:)
3291	v(nzt+1,:,:) = v(nzt,:,:)
3292
3293	ENDIF
3294	init_3d%from_file_v = .TRUE.
3295	ELSE
3296	message_string = 'Missing initial data for v-component'
3297	CALL message( 'netcdf_data_input_mod', 'PA0544', 1, 2, 0, 6, 0 )
3298	ENDIF
3299	!
3300	!-- Read w-component
3301	IF ( check_existence( var_names, 'init_atmosphere_w' ) ) THEN
3302	!
3303	!-- Read attributes for the fill value and level-of-detail
3304	CALL get_attribute( id_dynamic, char_fill, init_3d%fill_w, &
3305	.FALSE., 'init_atmosphere_w' )
3306	CALL get_attribute( id_dynamic, char_lod, init_3d%lod_w, &
3307	.FALSE., 'init_atmosphere_w' )
3308	!
3309	!-- level-of-detail 1 - read initialization profile
3310	IF ( init_3d%lod_w == 1 ) THEN
3311	ALLOCATE( init_3d%w_init(nzb:nzt+1) )
3312	init_3d%w_init = 0.0_wp
3313
3314	CALL get_variable( id_dynamic, 'init_atmosphere_w', &
3315	init_3d%w_init(nzb+1:nzt-1) )
3316	!
3317	!-- Set top-boundary condition (Neumann)
3318	init_3d%w_init(nzt:nzt+1) = init_3d%w_init(nzt-1)
3319	!
3320	!-- level-of-detail 2 - read 3D initialization data
3321	ELSEIF ( init_3d%lod_w == 2 ) THEN
3322
3323	CALL get_variable( id_dynamic, 'init_atmosphere_w', &
3324	w(nzb+1:nzt-1,nys:nyn,nxl:nxr), &
3325	nxl+1, nys+1, nzb+1, &
3326	nxr-nxl+1, nyn-nys+1, init_3d%nzw, &
3327	dynamic_3d )
3328	!
3329	!-- Set bottom and top-boundary
3330	w(nzb,:,:) = 0.0_wp
3331	w(nzt,:,:) = w(nzt-1,:,:)
3332	w(nzt+1,:,:) = w(nzt-1,:,:)
3333
3334	ENDIF
3335	init_3d%from_file_w = .TRUE.
3336	ELSE
3337	message_string = 'Missing initial data for w-component'
3338	CALL message( 'netcdf_data_input_mod', 'PA0544', 1, 2, 0, 6, 0 )
3339	ENDIF
3340	!
3341	!-- Read potential temperature
3342	IF ( .NOT. neutral ) THEN
3343	IF ( check_existence( var_names, 'init_atmosphere_pt' ) ) THEN
3344	!
3345	!-- Read attributes for the fill value and level-of-detail
3346	CALL get_attribute( id_dynamic, char_fill, init_3d%fill_pt, &
3347	.FALSE., 'init_atmosphere_pt' )
3348	CALL get_attribute( id_dynamic, char_lod, init_3d%lod_pt, &
3349	.FALSE., 'init_atmosphere_pt' )
3350	!
3351	!-- level-of-detail 1 - read initialization profile
3352	IF ( init_3d%lod_pt == 1 ) THEN
3353	ALLOCATE( init_3d%pt_init(nzb:nzt+1) )
3354
3355	CALL get_variable( id_dynamic, 'init_atmosphere_pt', &
3356	init_3d%pt_init(nzb+1:nzt) )
3357	!
3358	!-- Set Neumann top and surface boundary condition for initial
3359	!-- profil
3360	init_3d%pt_init(nzb) = init_3d%pt_init(nzb+1)
3361	init_3d%pt_init(nzt+1) = init_3d%pt_init(nzt)
3362	!
3363	!-- level-of-detail 2 - read 3D initialization data
3364	ELSEIF ( init_3d%lod_pt == 2 ) THEN
3365
3366	CALL get_variable( id_dynamic, 'init_atmosphere_pt', &
3367	pt(nzb+1:nzt,nys:nyn,nxl:nxr), &
3368	nxl+1, nys+1, nzb+1, &
3369	nxr-nxl+1, nyn-nys+1, init_3d%nzu, &
3370	dynamic_3d )
3371
3372	!
3373	!-- Set bottom and top-boundary
3374	pt(nzb,:,:) = pt(nzb+1,:,:)
3375	pt(nzt+1,:,:) = pt(nzt,:,:)
3376
3377	ENDIF
3378	init_3d%from_file_pt = .TRUE.
3379	ELSE
3380	message_string = 'Missing initial data for ' // &
3381	'potential temperature'
3382	CALL message( 'netcdf_data_input_mod', 'PA0544', 1, 2, 0, 6, 0 )
3383	ENDIF
3384	ENDIF
3385	!
3386	!-- Read mixing ratio
3387	IF ( humidity ) THEN
3388	IF ( check_existence( var_names, 'init_atmosphere_qv' ) ) THEN
3389	!
3390	!-- Read attributes for the fill value and level-of-detail
3391	CALL get_attribute( id_dynamic, char_fill, init_3d%fill_q, &
3392	.FALSE., 'init_atmosphere_qv' )
3393	CALL get_attribute( id_dynamic, char_lod, init_3d%lod_q, &
3394	.FALSE., 'init_atmosphere_qv' )
3395	!
3396	!-- level-of-detail 1 - read initialization profile
3397	IF ( init_3d%lod_q == 1 ) THEN
3398	ALLOCATE( init_3d%q_init(nzb:nzt+1) )
3399
3400	CALL get_variable( id_dynamic, 'init_atmosphere_qv', &
3401	init_3d%q_init(nzb+1:nzt) )
3402	!
3403	!-- Set bottom and top boundary condition (Neumann)
3404	init_3d%q_init(nzb) = init_3d%q_init(nzb+1)
3405	init_3d%q_init(nzt+1) = init_3d%q_init(nzt)
3406	!
3407	!-- level-of-detail 2 - read 3D initialization data
3408	ELSEIF ( init_3d%lod_q == 2 ) THEN
3409
3410	CALL get_variable( id_dynamic, 'init_atmosphere_qv', &
3411	q(nzb+1:nzt,nys:nyn,nxl:nxr), &
3412	nxl+1, nys+1, nzb+1, &
3413	nxr-nxl+1, nyn-nys+1, init_3d%nzu, &
3414	dynamic_3d )
3415
3416	!
3417	!-- Set bottom and top-boundary
3418	q(nzb,:,:) = q(nzb+1,:,:)
3419	q(nzt+1,:,:) = q(nzt,:,:)
3420
3421	ENDIF
3422	init_3d%from_file_q = .TRUE.
3423	ELSE
3424	message_string = 'Missing initial data for ' // &
3425	'mixing ratio'
3426	CALL message( 'netcdf_data_input_mod', 'PA0544', 1, 2, 0, 6, 0 )
3427	ENDIF
3428	ENDIF
3429	!
3430	!-- Read chemistry variables.
3431	!-- Please note, for the moment, only LOD=1 is allowed
3432	IF ( air_chemistry ) THEN
3433	!
3434	!-- Allocate chemistry input profiles, as well as arrays for fill values
3435	!-- and LOD's.
3436	ALLOCATE( init_3d%chem_init(nzb:nzt+1, &
3437	1:UBOUND(init_3d%var_names_chem, 1 )) )
3438	ALLOCATE( init_3d%fill_chem(1:UBOUND(init_3d%var_names_chem, 1)) )
3439	ALLOCATE( init_3d%lod_chem(1:UBOUND(init_3d%var_names_chem, 1)) )
3440
3441	DO n = 1, UBOUND(init_3d%var_names_chem, 1)
3442	IF ( check_existence( var_names, &
3443	TRIM( init_3d%var_names_chem(n) ) ) ) THEN
3444	!
3445	!-- Read attributes for the fill value and level-of-detail
3446	CALL get_attribute( id_dynamic, char_fill, &
3447	init_3d%fill_chem(n), &
3448	.FALSE., &
3449	TRIM( init_3d%var_names_chem(n) ) )
3450	CALL get_attribute( id_dynamic, char_lod, &
3451	init_3d%lod_chem(n), &
3452	.FALSE., &
3453	TRIM( init_3d%var_names_chem(n) ) )
3454	!
3455	!-- Give message that only LOD=1 is allowed.
3456	IF ( init_3d%lod_chem(n) /= 1 ) THEN
3457	message_string = 'For chemistry variables only LOD=1 is ' //&
3458	'allowed.'
3459	CALL message( 'netcdf_data_input_mod', 'PA0586', &
3460	1, 2, 0, 6, 0 )
3461	ENDIF
3462	!
3463	!-- level-of-detail 1 - read initialization profile
3464	CALL get_variable( id_dynamic, &
3465	TRIM( init_3d%var_names_chem(n) ), &
3466	init_3d%chem_init(nzb+1:nzt,n) )
3467	!
3468	!-- Set bottom and top boundary condition (Neumann)
3469	init_3d%chem_init(nzb,n) = init_3d%chem_init(nzb+1,n)
3470	init_3d%chem_init(nzt+1,n) = init_3d%chem_init(nzt,n)
3471
3472	init_3d%from_file_chem(n) = .TRUE.
3473	ENDIF
3474	ENDDO
3475	ENDIF
3476	!
3477	!-- Close input file
3478	CALL close_input_file( id_dynamic )
3479	#endif
3480	!
3481	!-- End of CPU measurement
3482	CALL cpu_log( log_point_s(85), 'NetCDF input init', 'stop' )
3483	!
3484	!-- Finally, check if the input data has any fill values. Please note,
3485	!-- checks depend on the LOD of the input data.
3486	IF ( init_3d%from_file_u ) THEN
3487	check_passed = .TRUE.
3488	IF ( init_3d%lod_u == 1 ) THEN
3489	IF ( ANY( init_3d%u_init(nzb+1:nzt+1) == init_3d%fill_u ) ) &
3490	check_passed = .FALSE.
3491	ELSEIF ( init_3d%lod_u == 2 ) THEN
3492	IF ( ANY( u(nzb+1:nzt+1,nys:nyn,nxlu:nxr) == init_3d%fill_u ) ) &
3493	check_passed = .FALSE.
3494	ENDIF
3495	IF ( .NOT. check_passed ) THEN
3496	message_string = 'NetCDF input for init_atmosphere_u must ' // &
3497	'not contain any _FillValues'
3498	CALL message( 'netcdf_data_input_mod', 'PA0545', 2, 2, 0, 6, 0 )
3499	ENDIF
3500	ENDIF
3501
3502	IF ( init_3d%from_file_v ) THEN
3503	check_passed = .TRUE.
3504	IF ( init_3d%lod_v == 1 ) THEN
3505	IF ( ANY( init_3d%v_init(nzb+1:nzt+1) == init_3d%fill_v ) ) &
3506	check_passed = .FALSE.
3507	ELSEIF ( init_3d%lod_v == 2 ) THEN
3508	IF ( ANY( v(nzb+1:nzt+1,nysv:nyn,nxl:nxr) == init_3d%fill_v ) ) &
3509	check_passed = .FALSE.
3510	ENDIF
3511	IF ( .NOT. check_passed ) THEN
3512	message_string = 'NetCDF input for init_atmosphere_v must ' // &
3513	'not contain any _FillValues'
3514	CALL message( 'netcdf_data_input_mod', 'PA0545', 2, 2, 0, 6, 0 )
3515	ENDIF
3516	ENDIF
3517
3518	IF ( init_3d%from_file_w ) THEN
3519	check_passed = .TRUE.
3520	IF ( init_3d%lod_w == 1 ) THEN
3521	IF ( ANY( init_3d%w_init(nzb+1:nzt) == init_3d%fill_w ) ) &
3522	check_passed = .FALSE.
3523	ELSEIF ( init_3d%lod_w == 2 ) THEN
3524	IF ( ANY( w(nzb+1:nzt,nys:nyn,nxl:nxr) == init_3d%fill_w ) ) &
3525	check_passed = .FALSE.
3526	ENDIF
3527	IF ( .NOT. check_passed ) THEN
3528	message_string = 'NetCDF input for init_atmosphere_w must ' // &
3529	'not contain any _FillValues'
3530	CALL message( 'netcdf_data_input_mod', 'PA0545', 2, 2, 0, 6, 0 )
3531	ENDIF
3532	ENDIF
3533
3534	IF ( init_3d%from_file_pt ) THEN
3535	check_passed = .TRUE.
3536	IF ( init_3d%lod_pt == 1 ) THEN
3537	IF ( ANY( init_3d%pt_init(nzb+1:nzt+1) == init_3d%fill_pt ) ) &
3538	check_passed = .FALSE.
3539	ELSEIF ( init_3d%lod_pt == 2 ) THEN
3540	IF ( ANY( pt(nzb+1:nzt+1,nys:nyn,nxl:nxr) == init_3d%fill_pt ) ) &
3541	check_passed = .FALSE.
3542	ENDIF
3543	IF ( .NOT. check_passed ) THEN
3544	message_string = 'NetCDF input for init_atmosphere_pt must ' // &
3545	'not contain any _FillValues'
3546	CALL message( 'netcdf_data_input_mod', 'PA0545', 2, 2, 0, 6, 0 )
3547	ENDIF
3548	ENDIF
3549
3550	IF ( init_3d%from_file_q ) THEN
3551	check_passed = .TRUE.
3552	IF ( init_3d%lod_q == 1 ) THEN
3553	IF ( ANY( init_3d%q_init(nzb+1:nzt+1) == init_3d%fill_q ) ) &
3554	check_passed = .FALSE.
3555	ELSEIF ( init_3d%lod_q == 2 ) THEN
3556	IF ( ANY( q(nzb+1:nzt+1,nys:nyn,nxl:nxr) == init_3d%fill_q ) ) &
3557	check_passed = .FALSE.
3558	ENDIF
3559	IF ( .NOT. check_passed ) THEN
3560	message_string = 'NetCDF input for init_atmosphere_q must ' // &
3561	'not contain any _FillValues'
3562	CALL message( 'netcdf_data_input_mod', 'PA0545', 2, 2, 0, 6, 0 )
3563	ENDIF
3564	ENDIF
3565	!
3566	!-- Workaround for cyclic conditions. Please see above for further explanation.
3567	IF ( bc_lr_cyc .AND. nxl == 0 ) nxlu = nxl
3568	IF ( bc_ns_cyc .AND. nys == 0 ) nysv = nys
3569
3570	END SUBROUTINE netcdf_data_input_init_3d
3571
3572	!------------------------------------------------------------------------------!
3573	! Description:
3574	! ------------
3575	!> Reads initialization data of u, v, w, pt, q, geostrophic wind components,
3576	!> as well as soil moisture and soil temperature, derived from larger-scale
3577	!> model (COSMO) by Inifor.
3578	!------------------------------------------------------------------------------!
3579	SUBROUTINE netcdf_data_input_init_lsm
3580
3581	USE control_parameters, &
3582	ONLY: message_string
3583
3584	USE indices, &
3585	ONLY: nx, nxl, nxr, ny, nyn, nys
3586
3587	IMPLICIT NONE
3588
3589	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names !< string containing all variables on file
3590
3591	INTEGER(iwp) :: id_dynamic !< NetCDF id of dynamic input file
3592	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
3593
3594	!
3595	!-- Skip routine if no input file with dynamic input data is available.
3596	IF ( .NOT. input_pids_dynamic ) RETURN
3597	!
3598	!-- CPU measurement
3599	CALL cpu_log( log_point_s(85), 'NetCDF input init', 'start' )
3600
3601	#if defined ( __netcdf )
3602	!
3603	!-- Open file in read-only mode
3604	CALL open_read_file( TRIM( input_file_dynamic ) // &
3605	TRIM( coupling_char ), id_dynamic )
3606
3607	!
3608	!-- At first, inquire all variable names.
3609	CALL inquire_num_variables( id_dynamic, num_vars )
3610	!
3611	!-- Allocate memory to store variable names.
3612	ALLOCATE( var_names(1:num_vars) )
3613	CALL inquire_variable_names( id_dynamic, var_names )
3614	!
3615	!-- Read vertical dimension for soil depth.
3616	IF ( check_existence( var_names, 'zsoil' ) ) &
3617	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nzs,&
3618	'zsoil' )
3619	!
3620	!-- Read also the horizontal dimensions required for soil initialization.
3621	!-- Please note, in case of non-nested runs or in case of root domain,
3622	!-- these data is already available, but will be read again for the sake
3623	!-- of clearness.
3624	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nx, &
3625	'x' )
3626	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%ny, &
3627	'y' )
3628	!
3629	!-- Check for correct horizontal and vertical dimension. Please note,
3630	!-- in case of non-nested runs or in case of root domain, these checks
3631	!-- are already performed
3632	IF ( init_3d%nx-1 /= nx .OR. init_3d%ny-1 /= ny ) THEN
3633	message_string = 'Number of inifor horizontal grid points '// &
3634	'does not match the number of numeric grid points.'
3635	CALL message( 'netcdf_data_input_mod', 'PA0543', 1, 2, 0, 6, 0 )
3636	ENDIF
3637	!
3638	!-- Read vertical dimensions. Later, these are required for eventual
3639	!-- inter- and extrapolations of the initialization data.
3640	IF ( check_existence( var_names, 'zsoil' ) ) THEN
3641	ALLOCATE( init_3d%z_soil(1:init_3d%nzs) )
3642	CALL get_variable( id_dynamic, 'zsoil', init_3d%z_soil )
3643	ENDIF
3644	!
3645	!-- Read initial data for soil moisture
3646	IF ( check_existence( var_names, 'init_soil_m' ) ) THEN
3647	!
3648	!-- Read attributes for the fill value and level-of-detail
3649	CALL get_attribute( id_dynamic, char_fill, &
3650	init_3d%fill_msoil, &
3651	.FALSE., 'init_soil_m' )
3652	CALL get_attribute( id_dynamic, char_lod, &
3653	init_3d%lod_msoil, &
3654	.FALSE., 'init_soil_m' )
3655	!
3656	!-- level-of-detail 1 - read initialization profile
3657	IF ( init_3d%lod_msoil == 1 ) THEN
3658	ALLOCATE( init_3d%msoil_1d(0:init_3d%nzs-1) )
3659
3660	CALL get_variable( id_dynamic, 'init_soil_m', &
3661	init_3d%msoil_1d(0:init_3d%nzs-1) )
3662	!
3663	!-- level-of-detail 2 - read 3D initialization data
3664	ELSEIF ( init_3d%lod_msoil == 2 ) THEN
3665	ALLOCATE ( init_3d%msoil_3d(0:init_3d%nzs-1,nys:nyn,nxl:nxr) )
3666
3667	CALL get_variable( id_dynamic, 'init_soil_m', &
3668	init_3d%msoil_3d(0:init_3d%nzs-1,nys:nyn,nxl:nxr),&
3669	nxl, nxr, nys, nyn, 0, init_3d%nzs-1 )
3670
3671	ENDIF
3672	init_3d%from_file_msoil = .TRUE.
3673	ENDIF
3674	!
3675	!-- Read soil temperature
3676	IF ( check_existence( var_names, 'init_soil_t' ) ) THEN
3677	!
3678	!-- Read attributes for the fill value and level-of-detail
3679	CALL get_attribute( id_dynamic, char_fill, &
3680	init_3d%fill_tsoil, &
3681	.FALSE., 'init_soil_t' )
3682	CALL get_attribute( id_dynamic, char_lod, &
3683	init_3d%lod_tsoil, &
3684	.FALSE., 'init_soil_t' )
3685	!
3686	!-- level-of-detail 1 - read initialization profile
3687	IF ( init_3d%lod_tsoil == 1 ) THEN
3688	ALLOCATE( init_3d%tsoil_1d(0:init_3d%nzs-1) )
3689
3690	CALL get_variable( id_dynamic, 'init_soil_t', &
3691	init_3d%tsoil_1d(0:init_3d%nzs-1) )
3692
3693	!
3694	!-- level-of-detail 2 - read 3D initialization data
3695	ELSEIF ( init_3d%lod_tsoil == 2 ) THEN
3696	ALLOCATE ( init_3d%tsoil_3d(0:init_3d%nzs-1,nys:nyn,nxl:nxr) )
3697
3698	CALL get_variable( id_dynamic, 'init_soil_t', &
3699	init_3d%tsoil_3d(0:init_3d%nzs-1,nys:nyn,nxl:nxr),&
3700	nxl, nxr, nys, nyn, 0, init_3d%nzs-1 )
3701	ENDIF
3702	init_3d%from_file_tsoil = .TRUE.
3703	ENDIF
3704	!
3705	!-- Close input file
3706	CALL close_input_file( id_dynamic )
3707	#endif
3708	!
3709	!-- End of CPU measurement
3710	CALL cpu_log( log_point_s(85), 'NetCDF input init', 'stop' )
3711
3712	END SUBROUTINE netcdf_data_input_init_lsm
3713
3714	!------------------------------------------------------------------------------!
3715	! Description:
3716	! ------------
3717	!> Reads data at lateral and top boundaries derived from larger-scale model
3718	!> (COSMO) by Inifor.
3719	!------------------------------------------------------------------------------!
3720	SUBROUTINE netcdf_data_input_offline_nesting
3721
3722	USE control_parameters, &
3723	ONLY: air_chemistry, bc_dirichlet_l, bc_dirichlet_n, &
3724	bc_dirichlet_r, bc_dirichlet_s, humidity, neutral, &
3725	nesting_offline, time_since_reference_point
3726
3727	USE indices, &
3728	ONLY: nxl, nxlu, nxr, nyn, nys, nysv, nzb, nzt
3729
3730	IMPLICIT NONE
3731
3732	INTEGER(iwp) :: id_dynamic !< NetCDF id of dynamic input file
3733	INTEGER(iwp) :: n !< running index for chemistry variables
3734	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
3735	INTEGER(iwp) :: t !< running index time dimension
3736	!
3737	!-- Skip input if no forcing from larger-scale models is applied.
3738	IF ( .NOT. nesting_offline ) RETURN
3739
3740	!
3741	!-- CPU measurement
3742	CALL cpu_log( log_point_s(86), 'NetCDF input forcing', 'start' )
3743
3744	#if defined ( __netcdf )
3745	!
3746	!-- Open file in read-only mode
3747	CALL open_read_file( TRIM( input_file_dynamic ) // &
3748	TRIM( coupling_char ), id_dynamic )
3749	!
3750	!-- Initialize INIFOR forcing.
3751	IF ( .NOT. nest_offl%init ) THEN
3752	!
3753	!-- At first, inquire all variable names.
3754	CALL inquire_num_variables( id_dynamic, num_vars )
3755	!
3756	!-- Allocate memory to store variable names.
3757	ALLOCATE( nest_offl%var_names(1:num_vars) )
3758	CALL inquire_variable_names( id_dynamic, nest_offl%var_names )
3759	!
3760	!-- Read time dimension, allocate memory and finally read time array
3761	CALL netcdf_data_input_get_dimension_length( id_dynamic, &
3762	nest_offl%nt, 'time' )
3763
3764	IF ( check_existence( nest_offl%var_names, 'time' ) ) THEN
3765	ALLOCATE( nest_offl%time(0:nest_offl%nt-1) )
3766	CALL get_variable( id_dynamic, 'time', nest_offl%time )
3767	ENDIF
3768	!
3769	!-- Read vertical dimension of scalar und w grid
3770	CALL netcdf_data_input_get_dimension_length( id_dynamic, &
3771	nest_offl%nzu, 'z' )
3772	CALL netcdf_data_input_get_dimension_length( id_dynamic, &
3773	nest_offl%nzw, 'zw' )
3774
3775	IF ( check_existence( nest_offl%var_names, 'z' ) ) THEN
3776	ALLOCATE( nest_offl%zu_atmos(1:nest_offl%nzu) )
3777	CALL get_variable( id_dynamic, 'z', nest_offl%zu_atmos )
3778	ENDIF
3779	IF ( check_existence( nest_offl%var_names, 'zw' ) ) THEN
3780	ALLOCATE( nest_offl%zw_atmos(1:nest_offl%nzw) )
3781	CALL get_variable( id_dynamic, 'zw', nest_offl%zw_atmos )
3782	ENDIF
3783
3784	!
3785	!-- Read surface pressure
3786	IF ( check_existence( nest_offl%var_names, &
3787	'surface_forcing_surface_pressure' ) ) THEN
3788	ALLOCATE( nest_offl%surface_pressure(0:nest_offl%nt-1) )
3789	CALL get_variable( id_dynamic, &
3790	'surface_forcing_surface_pressure', &
3791	nest_offl%surface_pressure )
3792	ENDIF
3793	!
3794	!-- Set control flag to indicate that initialization is already done
3795	nest_offl%init = .TRUE.
3796
3797	ENDIF
3798
3799	!
3800	!-- Obtain time index for current input starting at 0.
3801	!-- @todo: At the moment INIFOR and simulated time correspond
3802	!-- to each other. If required, adjust to daytime.
3803	nest_offl%tind = MINLOC( ABS( nest_offl%time - &
3804	time_since_reference_point ), DIM = 1 ) &
3805	- 1
3806	nest_offl%tind_p = nest_offl%tind + 1
3807	!
3808	!-- Read geostrophic wind components
3809	DO t = nest_offl%tind, nest_offl%tind_p
3810	CALL get_variable_pr( id_dynamic, 'ls_forcing_ug', t+1, &
3811	nest_offl%ug(t-nest_offl%tind,nzb+1:nzt) )
3812	CALL get_variable_pr( id_dynamic, 'ls_forcing_vg', t+1, &
3813	nest_offl%vg(t-nest_offl%tind,nzb+1:nzt) )
3814	ENDDO
3815	!
3816	!-- Read data at lateral and top boundaries. Please note, at left and
3817	!-- right domain boundary, yz-layers are read for u, v, w, pt and q.
3818	!-- For the v-component, the data starts at nysv, while for the other
3819	!-- quantities the data starts at nys. This is equivalent at the north
3820	!-- and south domain boundary for the u-component.
3821	!-- Further, lateral data is not accessed by parallel IO, indicated by the
3822	!-- last passed flag in the subroutine get_variable(). This is because
3823	!-- not every PE participates in this collective blocking read operation.
3824	IF ( bc_dirichlet_l ) THEN
3825	CALL get_variable( id_dynamic, 'ls_forcing_left_u', &
3826	nest_offl%u_left(0:1,nzb+1:nzt,nys:nyn), &
3827	nys+1, nzb+1, nest_offl%tind+1, &
3828	nyn-nys+1, nest_offl%nzu, 2, .FALSE. )
3829
3830	CALL get_variable( id_dynamic, 'ls_forcing_left_v', &
3831	nest_offl%v_left(0:1,nzb+1:nzt,nysv:nyn), &
3832	nysv, nzb+1, nest_offl%tind+1, &
3833	nyn-nysv+1, nest_offl%nzu, 2, .FALSE. )
3834
3835	CALL get_variable( id_dynamic, 'ls_forcing_left_w', &
3836	nest_offl%w_left(0:1,nzb+1:nzt-1,nys:nyn), &
3837	nys+1, nzb+1, nest_offl%tind+1, &
3838	nyn-nys+1, nest_offl%nzw, 2, .FALSE. )
3839
3840	IF ( .NOT. neutral ) THEN
3841	CALL get_variable( id_dynamic, 'ls_forcing_left_pt', &
3842	nest_offl%pt_left(0:1,nzb+1:nzt,nys:nyn), &
3843	nys+1, nzb+1, nest_offl%tind+1, &
3844	nyn-nys+1, nest_offl%nzu, 2, .FALSE. )
3845	ENDIF
3846
3847	IF ( humidity ) THEN
3848	CALL get_variable( id_dynamic, 'ls_forcing_left_qv', &
3849	nest_offl%q_left(0:1,nzb+1:nzt,nys:nyn), &
3850	nys+1, nzb+1, nest_offl%tind+1, &
3851	nyn-nys+1, nest_offl%nzu, 2, .FALSE. )
3852	ENDIF
3853
3854	IF ( air_chemistry ) THEN
3855	DO n = 1, UBOUND(nest_offl%var_names_chem_l, 1)
3856	IF ( check_existence( nest_offl%var_names, &
3857	nest_offl%var_names_chem_l(n) ) ) &
3858	THEN
3859	CALL get_variable( id_dynamic, &
3860	TRIM( nest_offl%var_names_chem_l(n) ), &
3861	nest_offl%chem_left(0:1,nzb+1:nzt,nys:nyn,n), &
3862	nys+1, nzb+1, nest_offl%tind+1, &
3863	nyn-nys+1, nest_offl%nzu, 2, .FALSE. )
3864	nest_offl%chem_from_file_l(n) = .TRUE.
3865	ENDIF
3866	ENDDO
3867	ENDIF
3868
3869	ENDIF
3870
3871	IF ( bc_dirichlet_r ) THEN
3872	CALL get_variable( id_dynamic, 'ls_forcing_right_u', &
3873	nest_offl%u_right(0:1,nzb+1:nzt,nys:nyn), &
3874	nys+1, nzb+1, nest_offl%tind+1, &
3875	nyn-nys+1, nest_offl%nzu, 2, .FALSE. )
3876
3877	CALL get_variable( id_dynamic, 'ls_forcing_right_v', &
3878	nest_offl%v_right(0:1,nzb+1:nzt,nysv:nyn), &
3879	nysv, nzb+1, nest_offl%tind+1, &
3880	nyn-nysv+1, nest_offl%nzu, 2, .FALSE. )
3881
3882	CALL get_variable( id_dynamic, 'ls_forcing_right_w', &
3883	nest_offl%w_right(0:1,nzb+1:nzt-1,nys:nyn), &
3884	nys+1, nzb+1, nest_offl%tind+1, &
3885	nyn-nys+1, nest_offl%nzw, 2, .FALSE. )
3886
3887	IF ( .NOT. neutral ) THEN
3888	CALL get_variable( id_dynamic, 'ls_forcing_right_pt', &
3889	nest_offl%pt_right(0:1,nzb+1:nzt,nys:nyn), &
3890	nys+1, nzb+1, nest_offl%tind+1, &
3891	nyn-nys+1, nest_offl%nzu, 2, .FALSE. )
3892	ENDIF
3893	IF ( humidity ) THEN
3894	CALL get_variable( id_dynamic, 'ls_forcing_right_qv', &
3895	nest_offl%q_right(0:1,nzb+1:nzt,nys:nyn), &
3896	nys+1, nzb+1, nest_offl%tind+1, &
3897	nyn-nys+1, nest_offl%nzu, 2, .FALSE. )
3898	ENDIF
3899
3900	IF ( air_chemistry ) THEN
3901	DO n = 1, UBOUND(nest_offl%var_names_chem_r, 1)
3902	IF ( check_existence( nest_offl%var_names, &
3903	nest_offl%var_names_chem_r(n) ) ) &
3904	THEN
3905	CALL get_variable( id_dynamic, &
3906	TRIM( nest_offl%var_names_chem_r(n) ), &
3907	nest_offl%chem_right(0:1,nzb+1:nzt,nys:nyn,n), &
3908	nys+1, nzb+1, nest_offl%tind+1, &
3909	nyn-nys+1, nest_offl%nzu, 2, .FALSE. )
3910	nest_offl%chem_from_file_r(n) = .TRUE.
3911	ENDIF
3912	ENDDO
3913	ENDIF
3914	ENDIF
3915
3916	IF ( bc_dirichlet_n ) THEN
3917
3918	CALL get_variable( id_dynamic, 'ls_forcing_north_u', &
3919	nest_offl%u_north(0:1,nzb+1:nzt,nxlu:nxr), &
3920	nxlu, nzb+1, nest_offl%tind+1, &
3921	nxr-nxlu+1, nest_offl%nzu, 2, .FALSE. )
3922
3923	CALL get_variable( id_dynamic, 'ls_forcing_north_v', &
3924	nest_offl%v_north(0:1,nzb+1:nzt,nxl:nxr), &
3925	nxl+1, nzb+1, nest_offl%tind+1, &
3926	nxr-nxl+1, nest_offl%nzu, 2, .FALSE. )
3927
3928	CALL get_variable( id_dynamic, 'ls_forcing_north_w', &
3929	nest_offl%w_north(0:1,nzb+1:nzt-1,nxl:nxr), &
3930	nxl+1, nzb+1, nest_offl%tind+1, &
3931	nxr-nxl+1, nest_offl%nzw, 2, .FALSE. )
3932
3933	IF ( .NOT. neutral ) THEN
3934	CALL get_variable( id_dynamic, 'ls_forcing_north_pt', &
3935	nest_offl%pt_north(0:1,nzb+1:nzt,nxl:nxr), &
3936	nxl+1, nzb+1, nest_offl%tind+1, &
3937	nxr-nxl+1, nest_offl%nzu, 2, .FALSE. )
3938	ENDIF
3939	IF ( humidity ) THEN
3940	CALL get_variable( id_dynamic, 'ls_forcing_north_qv', &
3941	nest_offl%q_north(0:1,nzb+1:nzt,nxl:nxr), &
3942	nxl+1, nzb+1, nest_offl%tind+1, &
3943	nxr-nxl+1, nest_offl%nzu, 2, .FALSE. )
3944	ENDIF
3945
3946	IF ( air_chemistry ) THEN
3947	DO n = 1, UBOUND(nest_offl%var_names_chem_n, 1)
3948	IF ( check_existence( nest_offl%var_names, &
3949	nest_offl%var_names_chem_n(n) ) ) &
3950	THEN
3951	CALL get_variable( id_dynamic, &
3952	TRIM( nest_offl%var_names_chem_n(n) ), &
3953	nest_offl%chem_north(0:1,nzb+1:nzt,nxl:nxr,n), &
3954	nxl+1, nzb+1, nest_offl%tind+1, &
3955	nxr-nxl+1, nest_offl%nzu, 2, .FALSE. )
3956	nest_offl%chem_from_file_n(n) = .TRUE.
3957	ENDIF
3958	ENDDO
3959	ENDIF
3960	ENDIF
3961
3962	IF ( bc_dirichlet_s ) THEN
3963	CALL get_variable( id_dynamic, 'ls_forcing_south_u', &
3964	nest_offl%u_south(0:1,nzb+1:nzt,nxlu:nxr), &
3965	nxlu, nzb+1, nest_offl%tind+1, &
3966	nxr-nxlu+1, nest_offl%nzu, 2, .FALSE. )
3967
3968	CALL get_variable( id_dynamic, 'ls_forcing_south_v', &
3969	nest_offl%v_south(0:1,nzb+1:nzt,nxl:nxr), &
3970	nxl+1, nzb+1, nest_offl%tind+1, &
3971	nxr-nxl+1, nest_offl%nzu, 2, .FALSE. )
3972
3973	CALL get_variable( id_dynamic, 'ls_forcing_south_w', &
3974	nest_offl%w_south(0:1,nzb+1:nzt-1,nxl:nxr), &
3975	nxl+1, nzb+1, nest_offl%tind+1, &
3976	nxr-nxl+1, nest_offl%nzw, 2, .FALSE. )
3977
3978	IF ( .NOT. neutral ) THEN
3979	CALL get_variable( id_dynamic, 'ls_forcing_south_pt', &
3980	nest_offl%pt_south(0:1,nzb+1:nzt,nxl:nxr), &
3981	nxl+1, nzb+1, nest_offl%tind+1, &
3982	nxr-nxl+1, nest_offl%nzu, 2, .FALSE. )
3983	ENDIF
3984	IF ( humidity ) THEN
3985	CALL get_variable( id_dynamic, 'ls_forcing_south_qv', &
3986	nest_offl%q_south(0:1,nzb+1:nzt,nxl:nxr), &
3987	nxl+1, nzb+1, nest_offl%tind+1, &
3988	nxr-nxl+1, nest_offl%nzu, 2, .FALSE. )
3989	ENDIF
3990
3991	IF ( air_chemistry ) THEN
3992	DO n = 1, UBOUND(nest_offl%var_names_chem_s, 1)
3993	IF ( check_existence( nest_offl%var_names, &
3994	nest_offl%var_names_chem_s(n) ) ) &
3995	THEN
3996	CALL get_variable( id_dynamic, &
3997	TRIM( nest_offl%var_names_chem_s(n) ), &
3998	nest_offl%chem_south(0:1,nzb+1:nzt,nxl:nxr,n), &
3999	nxl+1, nzb+1, nest_offl%tind+1, &
4000	nxr-nxl+1, nest_offl%nzu, 2, .FALSE. )
4001	nest_offl%chem_from_file_s(n) = .TRUE.
4002	ENDIF
4003	ENDDO
4004	ENDIF
4005	ENDIF
4006
4007	!
4008	!-- Top boundary
4009	CALL get_variable( id_dynamic, 'ls_forcing_top_u', &
4010	nest_offl%u_top(0:1,nys:nyn,nxlu:nxr), &
4011	nxlu, nys+1, nest_offl%tind+1, &
4012	nxr-nxlu+1, nyn-nys+1, 2, .TRUE. )
4013
4014	CALL get_variable( id_dynamic, 'ls_forcing_top_v', &
4015	nest_offl%v_top(0:1,nysv:nyn,nxl:nxr), &
4016	nxl+1, nysv, nest_offl%tind+1, &
4017	nxr-nxl+1, nyn-nysv+1, 2, .TRUE. )
4018
4019	CALL get_variable( id_dynamic, 'ls_forcing_top_w', &
4020	nest_offl%w_top(0:1,nys:nyn,nxl:nxr), &
4021	nxl+1, nys+1, nest_offl%tind+1, &
4022	nxr-nxl+1, nyn-nys+1, 2, .TRUE. )
4023
4024	IF ( .NOT. neutral ) THEN
4025	CALL get_variable( id_dynamic, 'ls_forcing_top_pt', &
4026	nest_offl%pt_top(0:1,nys:nyn,nxl:nxr), &
4027	nxl+1, nys+1, nest_offl%tind+1, &
4028	nxr-nxl+1, nyn-nys+1, 2, .TRUE. )
4029	ENDIF
4030	IF ( humidity ) THEN
4031	CALL get_variable( id_dynamic, 'ls_forcing_top_qv', &
4032	nest_offl%q_top(0:1,nys:nyn,nxl:nxr), &
4033	nxl+1, nys+1, nest_offl%tind+1, &
4034	nxr-nxl+1, nyn-nys+1, 2, .TRUE. )
4035	ENDIF
4036
4037	IF ( air_chemistry ) THEN
4038	DO n = 1, UBOUND(nest_offl%var_names_chem_t, 1)
4039	IF ( check_existence( nest_offl%var_names, &
4040	nest_offl%var_names_chem_t(n) ) ) THEN
4041	CALL get_variable( id_dynamic, &
4042	TRIM( nest_offl%var_names_chem_t(n) ), &
4043	nest_offl%chem_top(0:1,nys:nyn,nxl:nxr,n), &
4044	nxl+1, nys+1, nest_offl%tind+1, &
4045	nxr-nxl+1, nyn-nys+1, 2, .TRUE. )
4046	nest_offl%chem_from_file_t(n) = .TRUE.
4047	ENDIF
4048	ENDDO
4049	ENDIF
4050
4051	!
4052	!-- Close input file
4053	CALL close_input_file( id_dynamic )
4054	#endif
4055	!
4056	!-- End of CPU measurement
4057	CALL cpu_log( log_point_s(86), 'NetCDF input forcing', 'stop' )
4058
4059	END SUBROUTINE netcdf_data_input_offline_nesting
4060
4061
4062	!------------------------------------------------------------------------------!
4063	! Description:
4064	! ------------
4065	!> Checks input file for consistency and minimum requirements.
4066	!------------------------------------------------------------------------------!
4067	SUBROUTINE netcdf_data_input_check_dynamic
4068
4069	USE control_parameters, &
4070	ONLY: initializing_actions, message_string, nesting_offline
4071
4072	IMPLICIT NONE
4073
4074	!
4075	!-- In case of forcing, check whether dynamic input file is present
4076	IF ( .NOT. input_pids_dynamic .AND. nesting_offline ) THEN
4077	message_string = 'nesting_offline = .TRUE. requires dynamic ' // &
4078	'input file ' // &
4079	TRIM( input_file_dynamic ) // TRIM( coupling_char )
4080	CALL message( 'netcdf_data_input_mod', 'PA0546', 1, 2, 0, 6, 0 )
4081	ENDIF
4082	!
4083	!-- Dynamic input file must also be present if initialization via inifor is
4084	!-- prescribed.
4085	IF ( .NOT. input_pids_dynamic .AND. &
4086	TRIM( initializing_actions ) == 'inifor' ) THEN
4087	message_string = 'initializing_actions = inifor requires dynamic ' //&
4088	'input file ' // TRIM( input_file_dynamic ) // &
4089	TRIM( coupling_char )
4090	CALL message( 'netcdf_data_input_mod', 'PA0547', 1, 2, 0, 6, 0 )
4091	ENDIF
4092
4093	END SUBROUTINE netcdf_data_input_check_dynamic
4094
4095	!------------------------------------------------------------------------------!
4096	! Description:
4097	! ------------
4098	!> Checks input file for consistency and minimum requirements.
4099	!------------------------------------------------------------------------------!
4100	SUBROUTINE netcdf_data_input_check_static
4101
4102	USE arrays_3d, &
4103	ONLY: zu
4104
4105	USE control_parameters, &
4106	ONLY: land_surface, message_string, urban_surface
4107
4108	USE indices, &
4109	ONLY: nxl, nxr, nyn, nys, wall_flags_0
4110
4111	IMPLICIT NONE
4112
4113	INTEGER(iwp) :: i !< loop index along x-direction
4114	INTEGER(iwp) :: j !< loop index along y-direction
4115	INTEGER(iwp) :: n_surf !< number of different surface types at given location
4116
4117	LOGICAL :: check_passed !< flag indicating if a check passed
4118
4119	!
4120	!-- Return if no static input file is available
4121	IF ( .NOT. input_pids_static ) RETURN
4122	!
4123	!-- Check for correct dimension of surface_fractions, should run from 0-2.
4124	IF ( surface_fraction_f%from_file ) THEN
4125	IF ( surface_fraction_f%nf-1 > 2 ) THEN
4126	message_string = 'nsurface_fraction must not be larger than 3.'
4127	CALL message( 'netcdf_data_input_mod', 'PA0580', 1, 2, 0, 6, 0 )
4128	ENDIF
4129	ENDIF
4130	!
4131	!-- Check orography for fill-values. For the moment, give an error message.
4132	!-- More advanced methods, e.g. a nearest neighbor algorithm as used in GIS
4133	!-- systems might be implemented later.
4134	!-- Please note, if no terrain height is provided, it is set to 0.
4135	IF ( ANY( terrain_height_f%var == terrain_height_f%fill ) ) THEN
4136	message_string = 'NetCDF variable zt is not ' // &
4137	'allowed to have missing data'
4138	CALL message( 'netcdf_data_input_mod', 'PA0550', 2, 2, myid, 6, 0 )
4139	ENDIF
4140	!
4141	!-- Check for negative terrain heights
4142	IF ( ANY( terrain_height_f%var < 0.0_wp ) ) THEN
4143	message_string = 'NetCDF variable zt is not ' // &
4144	'allowed to have negative values'
4145	CALL message( 'netcdf_data_input_mod', 'PA0551', 2, 2, myid, 6, 0 )
4146	ENDIF
4147	!
4148	!-- If 3D buildings are read, check if building information is consistent
4149	!-- to numeric grid.
4150	IF ( buildings_f%from_file ) THEN
4151	IF ( buildings_f%lod == 2 ) THEN
4152	IF ( buildings_f%nz > SIZE( zu ) ) THEN
4153	message_string = 'Reading 3D building data - too much ' // &
4154	'data points along the vertical coordinate.'
4155	CALL message( 'netcdf_data_input_mod', 'PA0552', 2, 2, 0, 6, 0 )
4156	ENDIF
4157
4158	IF ( ANY( ABS( buildings_f%z(0:buildings_f%nz-1) - &
4159	zu(0:buildings_f%nz-1) ) > 1E-6_wp ) ) THEN
4160	message_string = 'Reading 3D building data - vertical ' // &
4161	'coordinate do not match numeric grid.'
4162	CALL message( 'netcdf_data_input_mod', 'PA0553', 2, 2, myid, 6, 0 )
4163	ENDIF
4164	ENDIF
4165	ENDIF
4166
4167	!
4168	!-- Skip further checks concerning buildings and natural surface properties
4169	!-- if no urban surface and land surface model are applied.
4170	IF ( .NOT. land_surface .AND. .NOT. urban_surface ) RETURN
4171	!
4172	!-- Check for minimum requirement of surface-classification data in case
4173	!-- static input file is used.
4174	IF ( ( .NOT. vegetation_type_f%from_file .OR. &
4175	.NOT. pavement_type_f%from_file .OR. &
4176	.NOT. water_type_f%from_file .OR. &
4177	.NOT. soil_type_f%from_file ) .OR. &
4178	( urban_surface .AND. .NOT. building_type_f%from_file ) ) THEN
4179	message_string = 'Minimum requirement for surface classification ' //&
4180	'is not fulfilled. At least ' // &
4181	'vegetation_type, pavement_type, ' // &
4182	'soil_type and water_type are '// &
4183	'required. If urban-surface model is applied, ' // &
4184	'also building_type is required'
4185	CALL message( 'netcdf_data_input_mod', 'PA0554', 1, 2, 0, 6, 0 )
4186	ENDIF
4187	!
4188	!-- Check for general availability of input variables.
4189	!-- If vegetation_type is 0 at any location, vegetation_pars as well as
4190	!-- root_area_dens_s are required.
4191	IF ( vegetation_type_f%from_file ) THEN
4192	IF ( ANY( vegetation_type_f%var == 0 ) ) THEN
4193	IF ( .NOT. vegetation_pars_f%from_file ) THEN
4194	message_string = 'If vegetation_type = 0 at any location, ' // &
4195	'vegetation_pars is required'
4196	CALL message( 'netcdf_data_input_mod', 'PA0555', 2, 2, -1, 6, 0 )
4197	ENDIF
4198	IF ( .NOT. root_area_density_lsm_f%from_file ) THEN
4199	message_string = 'If vegetation_type = 0 at any location, ' // &
4200	'root_area_dens_s is required'
4201	CALL message( 'netcdf_data_input_mod', 'PA0556', 2, 2, myid, 6, 0 )
4202	ENDIF
4203	ENDIF
4204	ENDIF
4205	!
4206	!-- If soil_type is zero at any location, soil_pars is required.
4207	IF ( soil_type_f%from_file ) THEN
4208	check_passed = .TRUE.
4209	IF ( ALLOCATED( soil_type_f%var_2d ) ) THEN
4210	IF ( ANY( soil_type_f%var_2d == 0 ) ) THEN
4211	IF ( .NOT. soil_pars_f%from_file ) check_passed = .FALSE.
4212	ENDIF
4213	ELSE
4214	IF ( ANY( soil_type_f%var_3d == 0 ) ) THEN
4215	IF ( .NOT. soil_pars_f%from_file ) check_passed = .FALSE.
4216	ENDIF
4217	ENDIF
4218	IF ( .NOT. check_passed ) THEN
4219	message_string = 'If soil_type = 0 at any location, ' // &
4220	'soil_pars is required'
4221	CALL message( 'netcdf_data_input_mod', 'PA0557', 2, 2, myid, 6, 0 )
4222	ENDIF
4223	ENDIF
4224	!
4225	!-- Buildings require a type in case of urban-surface model.
4226	IF ( buildings_f%from_file .AND. .NOT. building_type_f%from_file ) THEN
4227	message_string = 'If buildings are provided, also building_type ' // &
4228	'is required'
4229	CALL message( 'netcdf_data_input_mod', 'PA0581', 2, 2, myid, 6, 0 )
4230	ENDIF
4231	!
4232	!-- Buildings require an ID.
4233	IF ( buildings_f%from_file .AND. .NOT. building_id_f%from_file ) THEN
4234	message_string = 'If buildings are provided, also building_id ' // &
4235	'is required'
4236	CALL message( 'netcdf_data_input_mod', 'PA0582', 2, 2, myid, 6, 0 )
4237	ENDIF
4238	!
4239	!-- If building_type is zero at any location, building_pars is required.
4240	IF ( building_type_f%from_file ) THEN
4241	IF ( ANY( building_type_f%var == 0 ) ) THEN
4242	IF ( .NOT. building_pars_f%from_file ) THEN
4243	message_string = 'If building_type = 0 at any location, ' // &
4244	'building_pars is required'
4245	CALL message( 'netcdf_data_input_mod', 'PA0558', 2, 2, myid, 6, 0 )
4246	ENDIF
4247	ENDIF
4248	ENDIF
4249	!
4250	!-- If building_type is provided, also building_id is needed (due to the
4251	!-- filtering algorithm).
4252	IF ( building_type_f%from_file .AND. .NOT. building_id_f%from_file ) &
4253	THEN
4254	message_string = 'If building_type is provided, also building_id '// &
4255	'is required'
4256	CALL message( 'netcdf_data_input_mod', 'PA0519', 2, 2, myid, 6, 0 )
4257	ENDIF
4258	!
4259	!-- If albedo_type is zero at any location, albedo_pars is required.
4260	IF ( albedo_type_f%from_file ) THEN
4261	IF ( ANY( albedo_type_f%var == 0 ) ) THEN
4262	IF ( .NOT. albedo_pars_f%from_file ) THEN
4263	message_string = 'If albedo_type = 0 at any location, ' // &
4264	'albedo_pars is required'
4265	CALL message( 'netcdf_data_input_mod', 'PA0559', 2, 2, myid, 6, 0 )
4266	ENDIF
4267	ENDIF
4268	ENDIF
4269	!
4270	!-- If pavement_type is zero at any location, pavement_pars is required.
4271	IF ( pavement_type_f%from_file ) THEN
4272	IF ( ANY( pavement_type_f%var == 0 ) ) THEN
4273	IF ( .NOT. pavement_pars_f%from_file ) THEN
4274	message_string = 'If pavement_type = 0 at any location, ' // &
4275	'pavement_pars is required'
4276	CALL message( 'netcdf_data_input_mod', 'PA0560', 2, 2, myid, 6, 0 )
4277	ENDIF
4278	ENDIF
4279	ENDIF
4280	!
4281	!-- If pavement_type is zero at any location, also pavement_subsurface_pars
4282	!-- is required.
4283	IF ( pavement_type_f%from_file ) THEN
4284	IF ( ANY( pavement_type_f%var == 0 ) ) THEN
4285	IF ( .NOT. pavement_subsurface_pars_f%from_file ) THEN
4286	message_string = 'If pavement_type = 0 at any location, ' // &
4287	'pavement_subsurface_pars is required'
4288	CALL message( 'netcdf_data_input_mod', 'PA0561', 2, 2, myid, 6, 0 )
4289	ENDIF
4290	ENDIF
4291	ENDIF
4292	!
4293	!-- If water_type is zero at any location, water_pars is required.
4294	IF ( water_type_f%from_file ) THEN
4295	IF ( ANY( water_type_f%var == 0 ) ) THEN
4296	IF ( .NOT. water_pars_f%from_file ) THEN
4297	message_string = 'If water_type = 0 at any location, ' // &
4298	'water_pars is required'
4299	CALL message( 'netcdf_data_input_mod', 'PA0562', 2, 2,myid, 6, 0 )
4300	ENDIF
4301	ENDIF
4302	ENDIF
4303	!
4304	!-- Check for local consistency of the input data.
4305	DO i = nxl, nxr
4306	DO j = nys, nyn
4307	!
4308	!-- For each (y,x)-location at least one of the parameters
4309	!-- vegetation_type, pavement_type, building_type, or water_type
4310	!-- must be set to a nonÂmissing value.
4311	IF ( land_surface .AND. .NOT. urban_surface ) THEN
4312	IF ( vegetation_type_f%var(j,i) == vegetation_type_f%fill .AND.&
4313	pavement_type_f%var(j,i) == pavement_type_f%fill .AND.&
4314	water_type_f%var(j,i) == water_type_f%fill ) THEN
4315	WRITE( message_string, * ) &
4316	'At least one of the parameters '// &
4317	'vegetation_type, pavement_type, ' // &
4318	'or water_type must be set '// &
4319	'to a non-missing value. Grid point: ', j, i
4320	CALL message( 'netcdf_data_input_mod', 'PA0563', 2, 2, myid, 6, 0 )
4321	ENDIF
4322	ELSEIF ( land_surface .AND. urban_surface ) THEN
4323	IF ( vegetation_type_f%var(j,i) == vegetation_type_f%fill .AND.&
4324	pavement_type_f%var(j,i) == pavement_type_f%fill .AND.&
4325	building_type_f%var(j,i) == building_type_f%fill .AND.&
4326	water_type_f%var(j,i) == water_type_f%fill ) THEN
4327	WRITE( message_string, * ) &
4328	'At least one of the parameters '// &
4329	'vegetation_type, pavement_type, ' // &
4330	'building_type, or water_type must be set '// &
4331	'to a non-missing value. Grid point: ', j, i
4332	CALL message( 'netcdf_data_input_mod', 'PA0563', 2, 2, myid, 6, 0 )
4333	ENDIF
4334	ENDIF
4335
4336	!
4337	!-- Note that a soil_type is required for each location (y,x) where
4338	!-- either vegetation_type or pavement_type is a nonÂmissing value.
4339	IF ( ( vegetation_type_f%var(j,i) /= vegetation_type_f%fill .OR. &
4340	pavement_type_f%var(j,i) /= pavement_type_f%fill ) ) THEN
4341	check_passed = .TRUE.
4342	IF ( ALLOCATED( soil_type_f%var_2d ) ) THEN
4343	IF ( soil_type_f%var_2d(j,i) == soil_type_f%fill ) &
4344	check_passed = .FALSE.
4345	ELSE
4346	IF ( ANY( soil_type_f%var_3d(:,j,i) == soil_type_f%fill) ) &
4347	check_passed = .FALSE.
4348	ENDIF
4349
4350	IF ( .NOT. check_passed ) THEN
4351	message_string = 'soil_type is required for each '// &
4352	'location (y,x) where vegetation_type or ' // &
4353	'pavement_type is a non-missing value.'
4354	CALL message( 'netcdf_data_input_mod', 'PA0564', &
4355	2, 2, myid, 6, 0 )
4356	ENDIF
4357	ENDIF
4358	!
4359	!-- Check for consistency of surface fraction. If more than one type
4360	!-- is set, surface fraction need to be given and the sum must not
4361	!-- be larger than 1.
4362	n_surf = 0
4363	IF ( vegetation_type_f%var(j,i) /= vegetation_type_f%fill ) &
4364	n_surf = n_surf + 1
4365	IF ( water_type_f%var(j,i) /= water_type_f%fill ) &
4366	n_surf = n_surf + 1
4367	IF ( pavement_type_f%var(j,i) /= pavement_type_f%fill ) &
4368	n_surf = n_surf + 1
4369
4370	IF ( n_surf > 1 ) THEN
4371	IF ( .NOT. surface_fraction_f%from_file ) THEN
4372	message_string = 'If more than one surface type is ' // &
4373	'given at a location, surface_fraction ' // &
4374	'must be provided.'
4375	CALL message( 'netcdf_data_input_mod', 'PA0565', &
4376	2, 2, myid, 6, 0 )
4377	ELSEIF ( ANY ( surface_fraction_f%frac(:,j,i) == &
4378	surface_fraction_f%fill ) ) THEN
4379	message_string = 'If more than one surface type is ' // &
4380	'given at a location, surface_fraction ' // &
4381	'must be provided.'
4382	CALL message( 'netcdf_data_input_mod', 'PA0565', &
4383	2, 2, myid, 6, 0 )
4384	ENDIF
4385	ENDIF
4386	!
4387	!-- Check for further mismatches. e.g. relative fractions exceed 1 or
4388	!-- vegetation_type is set but surface vegetation fraction is zero,
4389	!-- etc..
4390	IF ( surface_fraction_f%from_file ) THEN
4391	!
4392	!-- Sum of relative fractions must not exceed 1.
4393	IF ( SUM ( surface_fraction_f%frac(0:2,j,i) ) > 1.0_wp ) THEN
4394	message_string = 'surface_fraction must not exceed 1'
4395	CALL message( 'netcdf_data_input_mod', 'PA0566', &
4396	2, 2, myid, 6, 0 )
4397	ENDIF
4398	!
4399	!-- Relative fraction for a type must not be zero at locations where
4400	!-- this type is set.
4401	IF ( &
4402	( vegetation_type_f%var(j,i) /= vegetation_type_f%fill .AND.&
4403	( surface_fraction_f%frac(ind_veg_wall,j,i) == 0.0_wp .OR. &
4404	surface_fraction_f%frac(ind_veg_wall,j,i) == &
4405	surface_fraction_f%fill ) &
4406	) .OR. &
4407	( pavement_type_f%var(j,i) /= pavement_type_f%fill .AND. &
4408	( surface_fraction_f%frac(ind_pav_green,j,i) == 0.0_wp .OR. &
4409	surface_fraction_f%frac(ind_pav_green,j,i) == &
4410	surface_fraction_f%fill ) &
4411	) .OR. &
4412	( water_type_f%var(j,i) /= water_type_f%fill .AND. &
4413	( surface_fraction_f%frac(ind_wat_win,j,i) == 0.0_wp .OR. &
4414	surface_fraction_f%frac(ind_wat_win,j,i) == &
4415	surface_fraction_f%fill ) &
4416	) ) THEN
4417	WRITE( message_string, * ) 'Mismatch in setting of ' // &
4418	'surface_fraction. Vegetation-, pavement-, or '// &
4419	'water surface is given at (i,j) = ( ', i, j, &
4420	' ), but surface fraction is 0 for the given type.'
4421	CALL message( 'netcdf_data_input_mod', 'PA0567', &
4422	2, 2, myid, 6, 0 )
4423	ENDIF
4424	!
4425	!-- Relative fraction for a type must not contain non-zero values
4426	!-- if this type is not set.
4427	IF ( &
4428	( vegetation_type_f%var(j,i) == vegetation_type_f%fill .AND.&
4429	( surface_fraction_f%frac(ind_veg_wall,j,i) /= 0.0_wp .AND. &
4430	surface_fraction_f%frac(ind_veg_wall,j,i) /= &
4431	surface_fraction_f%fill ) &
4432	) .OR. &
4433	( pavement_type_f%var(j,i) == pavement_type_f%fill .AND. &
4434	( surface_fraction_f%frac(ind_pav_green,j,i) /= 0.0_wp .AND. &
4435	surface_fraction_f%frac(ind_pav_green,j,i) /= &
4436	surface_fraction_f%fill ) &
4437	) .OR. &
4438	( water_type_f%var(j,i) == water_type_f%fill .AND. &
4439	( surface_fraction_f%frac(ind_wat_win,j,i) /= 0.0_wp .AND. &
4440	surface_fraction_f%frac(ind_wat_win,j,i) /= &
4441	surface_fraction_f%fill ) &
4442