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Last change on this file since 3553 was 3553, checked in by suehring, 6 years ago
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1	!> @file netcdf_data_input_mod.f90
2	!------------------------------------------------------------------------------!
3	! This file is part of the PALM model system.
4	!
5	! PALM is free software: you can redistribute it and/or modify it under the
6	! terms of the GNU General Public License as published by the Free Software
7	! Foundation, either version 3 of the License, or (at your option) any later
8	! version.
9	!
10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
13	!
14	! You should have received a copy of the GNU General Public License along with
15	! PALM. If not, see <http://www.gnu.org/licenses/>.
16	!
17	! Copyright 1997-2018 Leibniz Universitaet Hannover
18	!------------------------------------------------------------------------------!
19	!
20	! Current revisions:
21	! -----------------
22	!
23	!
24	! Former revisions:
25	! -----------------
26	! $Id: netcdf_data_input_mod.f90 3553 2018-11-22 10:30:48Z suehring $
27	! variables documented and unused variables removed
28	!
29	! 3552 2018-11-22 10:28:35Z suehring
30	! Revise ghost point exchange and resizing of input variables
31	!
32	! 3542 2018-11-20 17:04:13Z suehring
33	! - read optional attributes from file
34	! - set default origin_time
35	!
36	! 3518 2018-11-12 18:10:23Z suehring
37	! Additional checks
38	!
39	! 3516 2018-11-12 15:49:39Z gronemeier
40	! bugfix: - difference in z coordinate between file and PALM must be <1e-6
41	! - output of error 553 for all PEs
42	!
43	! 3498 2018-11-07 10:53:03Z gronemeier
44	! Bugfix: print error message by processor which encounters the error
45	!
46	! 3485 2018-11-03 17:09:40Z gronemeier
47	! - get central meridian from origin_lon if crs does not exist
48	! - set default origin_lon to 0
49	!
50	! 3483 2018-11-02 14:19:26Z raasch
51	! bugfix: misplaced directives for netCDF fixed
52	!
53	! 3474 2018-10-30 21:07:39Z kanani
54	! Add UV exposure model input (Schrempf)
55	!
56	! 3472 2018-10-30 20:43:50Z suehring
57	! Salsa implemented
58	!
59	! 3464 2018-10-30 18:08:55Z kanani
60	! Define coordinate reference system (crs) and read from input dataset
61	! Revise default values for reference coordinates
62	!
63	! 3459 2018-10-30 15:04:11Z gronemeier
64	! from chemistry branch r3443, banzhafs, Russo:
65	! Uncommented lines on dimension of surface_fractions
66	! Removed par_emis_time_factor variable, moved to chem_emissions_mod
67	! Initialized nspec and other emission variables at time of declaration
68	! Modified EXPERT mode to PRE-PROCESSED mode
69	! Introduced Chemistry static netcdf file
70	! Added the routine for reading-in netcdf data for chemistry
71	! Added routines to get_variable interface specific for chemistry files
72	!
73	! 3429 2018-10-25 13:04:23Z knoop
74	! add default values of origin_x/y/z
75	!
76	! 3404 2018-10-23 13:29:11Z suehring
77	! Consider time-dependent geostrophic wind components in offline nesting
78	!
79	! 3376 2018-10-19 10:15:32Z suehring
80	! Additional check for consistent building initialization implemented
81	!
82	! 3347 2018-10-15 14:21:08Z suehring
83	! Subroutine renamed
84	!
85	! 3257 2018-09-17 17:11:46Z suehring
86	! (from branch resler)
87	! Formatting
88	!
89	! 3298 2018-10-02 12:21:11Z kanani
90	! Modified EXPERT mode to PRE-PROCESSED mode (Russo)
91	! Introduced Chemistry static netcdf file (Russo)
92	! Added the routine for reading-in netcdf data for chemistry (Russo)
93	! Added routines to get_variable interface specific for chemistry files (Russo)
94	!
95	! 3257 2018-09-17 17:11:46Z suehring
96	! Adjust checks for building_type and building_id, which is necessary after
97	! topography filtering (building_type and id can be modified by the filtering).
98	!
99	! 3254 2018-09-17 10:53:57Z suehring
100	! Additional check for surface_fractions and and checks for building_id and
101	! building_type extended.
102	!
103	! 3241 2018-09-12 15:02:00Z raasch
104	! unused variables removed
105	!
106	! 3215 2018-08-29 09:58:59Z suehring
107	! - Separate input of soil properties from input of atmospheric data. This
108	! enables input of soil properties also in child domains without any
109	! dependence on atmospheric input
110	! - Check for missing initial 1D/3D data in dynamic input file
111	! - Revise checks for matching grid spacing in model and input file
112	! - Bugfix, add netcdf4_parallel directive for collective read operation
113	! - Revise error message numbers
114	!
115	! 3209 2018-08-27 16:58:37Z suehring
116	! Read zsoil dimension length only if soil variables are provided
117	!
118	! 3183 2018-07-27 14:25:55Z suehring
119	! Adjust input of dynamic driver according to revised Inifor version.
120	! Replace simulated_time by time_since_reference_point.
121	! Rename variables in mesoscale-offline nesting mode.
122	!
123	! 3182 2018-07-27 13:36:03Z suehring
124	! Slightly revise check for surface_fraction in order to check only the relevant
125	! fractions
126	!
127	! 3103 2018-07-04 17:30:52Z suehring
128	! New check for negative terrain heights
129	!
130	! 3089 2018-06-27 13:20:38Z suehring
131	! Revise call for message routine in case of local data inconsistencies.
132	!
133	! 3054 2018-06-01 16:08:59Z gronemeier
134	! Bugfix: force an MPI abort if errors occur while reading building heights
135	! from ASCII file
136	!
137	! 3053 2018-06-01 12:59:07Z suehring
138	! Revise checks for variable surface_fraction
139	!
140	! 3051 2018-05-30 17:43:55Z suehring
141	! - Speed-up NetCDF input
142	! - Revise input routines and remove NetCDF input via IO-blocks since this is
143	! not working in parallel mode in case blocking collective read operations
144	! are done
145	! - Temporarily revoke renaming of input variables in dynamic driver (tend_ug,
146	! tend_vg, zsoil) in order to keep dynamic input file working with current
147	! model version
148	! - More detailed error messages created
149	!
150	! 3045 2018-05-28 07:55:41Z Giersch
151	! Error messages revised
152	!
153	! 3041 2018-05-25 10:39:54Z gronemeier
154	! Add data type for global file attributes
155	! Add read of global attributes of static driver
156	!
157	! 3037 2018-05-24 10:39:29Z gronemeier
158	! renamed 'depth' to 'zsoil'
159	!
160	! 3036 2018-05-24 10:18:26Z gronemeier
161	! Revision of input vars according to UC2 data standard
162	! - renamed 'orography_2D' to 'zt'
163	! - renamed 'buildings_2D' to 'buildings_2d'
164	! - renamed 'buildings_3D' to 'buildings_3d'
165	! - renamed 'leaf_are_density' to 'lad'
166	! - renamed 'basal_are_density' to 'bad'
167	! - renamed 'root_are_density_lad' to 'root_area_dens_r'
168	! - renamed 'root_are_density_lsm' to 'root_area_dens_s'
169	! - renamed 'ls_forcing_ug' to 'tend_ug'
170	! - renamed 'ls_forcing_vg' to 'tend_vg'
171	!
172	! 3019 2018-05-13 07:05:43Z maronga
173	! Improved reading speed of large NetCDF files
174	!
175	! 2963 2018-04-12 14:47:44Z suehring
176	! - Revise checks for static input variables.
177	! - Introduce index for vegetation/wall, pavement/green-wall and water/window
178	! surfaces, for clearer access of surface fraction, albedo, emissivity, etc. .
179	!
180	! 2958 2018-04-11 15:38:13Z suehring
181	! Synchronize longitude and latitude between nested model domains, values are
182	! taken from the root model.
183	!
184	! 2955 2018-04-09 15:14:01Z suehring
185	! Extend checks for consistent setting of buildings, its ID and type.
186	! Add log-points to measure CPU time of NetCDF data input.
187	!
188	! 2953 2018-04-09 11:26:02Z suehring
189	! Bugfix in checks for initialization data
190	!
191	! 2947 2018-04-04 18:01:41Z suehring
192	! Checks for dynamic input revised
193	!
194	! 2946 2018-04-04 17:01:23Z suehring
195	! Bugfix for revision 2945, perform checks only if dynamic input file is
196	! available.
197	!
198	! 2945 2018-04-04 16:27:14Z suehring
199	! - Mimic for topography input slightly revised, in order to enable consistency
200	! checks
201	! - Add checks for dimensions in dynamic input file and move already existing
202	! checks
203	!
204	! 2938 2018-03-27 15:52:42Z suehring
205	! Initial read of geostrophic wind components from dynamic driver.
206	!
207	! 2773 2018-01-30 14:12:54Z suehring
208	! Revise checks for surface_fraction.
209	!
210	! 2925 2018-03-23 14:54:11Z suehring
211	! Check for further inconsistent settings of surface_fractions.
212	! Some messages slightly rephrased and error numbers renamed.
213	!
214	! 2898 2018-03-15 13:03:01Z suehring
215	! Check if each building has a type. Further, check if dimensions in static
216	! input file match the model dimensions.
217	!
218	! 2897 2018-03-15 11:47:16Z suehring
219	! Relax restrictions for topography input, terrain and building heights can be
220	! input separately and are not mandatory any more.
221	!
222	! 2874 2018-03-13 10:55:42Z knoop
223	! Bugfix: wrong placement of netcdf cpp-macros fixed
224	!
225	! 2794 2018-02-07 14:09:43Z knoop
226	! Check if 3D building input is consistent to numeric grid.
227	!
228	! 2773 2018-01-30 14:12:54Z suehring
229	! - Enable initialization with 3D topography.
230	! - Move check for correct initialization in nesting mode to check_parameters.
231	!
232	! 2772 2018-01-29 13:10:35Z suehring
233	! Initialization of simulation independent on land-surface model.
234	!
235	! 2746 2018-01-15 12:06:04Z suehring
236	! Read plant-canopy variables independently on land-surface model usage
237	!
238	! 2718 2018-01-02 08:49:38Z maronga
239	! Corrected "Former revisions" section
240	!
241	! 2711 2017-12-20 17:04:49Z suehring
242	! Rename subroutine close_file to avoid double-naming.
243	!
244	! 2700 2017-12-15 14:12:35Z suehring
245	!
246	! 2696 2017-12-14 17:12:51Z kanani
247	! Initial revision (suehring)
248	!
249	!
250	!
251	!
252	! Authors:
253	! --------
254	! @author Matthias Suehring
255	!
256	! Description:
257	! ------------
258	!> Modulue contains routines to input data according to Palm input data
259	!> standart using dynamic and static input files.
260	!> @todo - Chemistry: revise reading of netcdf file and ajdust formatting according to standard!!!
261	!> @todo - Order input alphabetically
262	!> @todo - Revise error messages and error numbers
263	!> @todo - Input of missing quantities (chemical species, emission rates)
264	!> @todo - Defninition and input of still missing variable attributes
265	!> @todo - Input of initial geostrophic wind profiles with cyclic conditions.
266	!------------------------------------------------------------------------------!
267	MODULE netcdf_data_input_mod
268
269	USE control_parameters, &
270	ONLY: coupling_char, io_blocks, io_group
271
272	USE cpulog, &
273	ONLY: cpu_log, log_point_s
274
275	USE indices, &
276	ONLY: nbgp
277
278	USE kinds
279
280	#if defined ( __netcdf )
281	USE NETCDF
282	#endif
283
284	USE pegrid
285
286	USE surface_mod, &
287	ONLY: ind_pav_green, ind_veg_wall, ind_wat_win
288	!
289	!-- Define type for dimensions.
290	TYPE dims_xy
291	INTEGER(iwp) :: nx !< dimension length in x
292	INTEGER(iwp) :: ny !< dimension length in y
293	INTEGER(iwp) :: nz !< dimension length in z
294	REAL(wp), DIMENSION(:), ALLOCATABLE :: x !< dimension array in x
295	REAL(wp), DIMENSION(:), ALLOCATABLE :: y !< dimension array in y
296	REAL(wp), DIMENSION(:), ALLOCATABLE :: z !< dimension array in z
297	END TYPE dims_xy
298	!
299	!-- Define data type for nesting in larger-scale models like COSMO.
300	!-- Data type comprises u, v, w, pt, and q at lateral and top boundaries.
301	TYPE nest_offl_type
302
303	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names
304
305	INTEGER(iwp) :: nt !< number of time levels in dynamic input file
306	INTEGER(iwp) :: nzu !< number of vertical levels on scalar grid in dynamic input file
307	INTEGER(iwp) :: nzw !< number of vertical levels on w grid in dynamic input file
308	INTEGER(iwp) :: tind !< time index for reference time in mesoscale-offline nesting
309	INTEGER(iwp) :: tind_p !< time index for following time in mesoscale-offline nesting
310
311	LOGICAL :: init = .FALSE. !< flag indicating that offline nesting is already initialized
312
313	REAL(wp), DIMENSION(:), ALLOCATABLE :: surface_pressure !< time dependent surface pressure
314	REAL(wp), DIMENSION(:), ALLOCATABLE :: time !< time levels in dynamic input file
315	REAL(wp), DIMENSION(:), ALLOCATABLE :: zu_atmos !< vertical levels at scalar grid in dynamic input file
316	REAL(wp), DIMENSION(:), ALLOCATABLE :: zw_atmos !< vertical levels at w grid in dynamic input file
317
318	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: ug !< domain-averaged geostrophic component
319	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: vg !< domain-averaged geostrophic component
320
321	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: u_left !< u-component at left boundary
322	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: v_left !< v-component at left boundary
323	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: w_left !< w-component at left boundary
324	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: q_left !< mixing ratio at left boundary
325	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: pt_left !< potentital temperautre at left boundary
326
327	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: u_north !< u-component at north boundary
328	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: v_north !< v-component at north boundary
329	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: w_north !< w-component at north boundary
330	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: q_north !< mixing ratio at north boundary
331	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: pt_north !< potentital temperautre at north boundary
332
333	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: u_right !< u-component at right boundary
334	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: v_right !< v-component at right boundary
335	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: w_right !< w-component at right boundary
336	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: q_right !< mixing ratio at right boundary
337	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: pt_right !< potentital temperautre at right boundary
338
339	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: u_south !< u-component at south boundary
340	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: v_south !< v-component at south boundary
341	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: w_south !< w-component at south boundary
342	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: q_south !< mixing ratio at south boundary
343	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: pt_south !< potentital temperautre at south boundary
344
345	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: u_top !< u-component at top boundary
346	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: v_top !< v-component at top boundary
347	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: w_top !< w-component at top boundary
348	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: q_top !< mixing ratio at top boundary
349	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: pt_top !< potentital temperautre at top boundary
350
351	END TYPE nest_offl_type
352
353	TYPE init_type
354
355	CHARACTER(LEN=23) :: origin_time = '2000-01-01 00:00:00 +00' !< reference time of input data
356
357	INTEGER(iwp) :: lod_msoil !< level of detail - soil moisture
358	INTEGER(iwp) :: lod_pt !< level of detail - pt
359	INTEGER(iwp) :: lod_q !< level of detail - q
360	INTEGER(iwp) :: lod_tsoil !< level of detail - soil temperature
361	INTEGER(iwp) :: lod_u !< level of detail - u-component
362	INTEGER(iwp) :: lod_v !< level of detail - v-component
363	INTEGER(iwp) :: lod_w !< level of detail - w-component
364	INTEGER(iwp) :: nx !< number of scalar grid points along x in dynamic input file
365	INTEGER(iwp) :: nxu !< number of u grid points along x in dynamic input file
366	INTEGER(iwp) :: ny !< number of scalar grid points along y in dynamic input file
367	INTEGER(iwp) :: nyv !< number of v grid points along y in dynamic input file
368	INTEGER(iwp) :: nzs !< number of vertical soil levels in dynamic input file
369	INTEGER(iwp) :: nzu !< number of vertical levels on scalar grid in dynamic input file
370	INTEGER(iwp) :: nzw !< number of vertical levels on w grid in dynamic input file
371
372	LOGICAL :: from_file_msoil = .FALSE. !< flag indicating whether soil moisture is already initialized from file
373	LOGICAL :: from_file_pt = .FALSE. !< flag indicating whether pt is already initialized from file
374	LOGICAL :: from_file_q = .FALSE. !< flag indicating whether q is already initialized from file
375	LOGICAL :: from_file_tsoil = .FALSE. !< flag indicating whether soil temperature is already initialized from file
376	LOGICAL :: from_file_u = .FALSE. !< flag indicating whether u is already initialized from file
377	LOGICAL :: from_file_ug = .FALSE. !< flag indicating whether ug is already initialized from file
378	LOGICAL :: from_file_v = .FALSE. !< flag indicating whether v is already initialized from file
379	LOGICAL :: from_file_vg = .FALSE. !< flag indicating whether ug is already initialized from file
380	LOGICAL :: from_file_w = .FALSE. !< flag indicating whether w is already initialized from file
381
382	REAL(wp) :: fill_msoil !< fill value for soil moisture
383	REAL(wp) :: fill_pt !< fill value for pt
384	REAL(wp) :: fill_q !< fill value for q
385	REAL(wp) :: fill_tsoil !< fill value for soil temperature
386	REAL(wp) :: fill_u !< fill value for u
387	REAL(wp) :: fill_v !< fill value for v
388	REAL(wp) :: fill_w !< fill value for w
389	REAL(wp) :: latitude = 0.0_wp !< latitude of the lower left corner
390	REAL(wp) :: longitude = 0.0_wp !< longitude of the lower left corner
391	REAL(wp) :: origin_x = 500000.0_wp !< UTM easting of the lower left corner
392	REAL(wp) :: origin_y = 0.0_wp !< UTM northing of the lower left corner
393	REAL(wp) :: origin_z = 0.0_wp !< reference height of input data
394	REAL(wp) :: rotation_angle = 0.0_wp !< rotation angle of input data
395
396	REAL(wp), DIMENSION(:), ALLOCATABLE :: msoil_1d !< initial vertical profile of soil moisture
397	REAL(wp), DIMENSION(:), ALLOCATABLE :: pt_init !< initial vertical profile of pt
398	REAL(wp), DIMENSION(:), ALLOCATABLE :: q_init !< initial vertical profile of q
399	REAL(wp), DIMENSION(:), ALLOCATABLE :: tsoil_1d !< initial vertical profile of soil temperature
400	REAL(wp), DIMENSION(:), ALLOCATABLE :: u_init !< initial vertical profile of u
401	REAL(wp), DIMENSION(:), ALLOCATABLE :: ug_init !< initial vertical profile of ug
402	REAL(wp), DIMENSION(:), ALLOCATABLE :: v_init !< initial vertical profile of v
403	REAL(wp), DIMENSION(:), ALLOCATABLE :: vg_init !< initial vertical profile of ug
404	REAL(wp), DIMENSION(:), ALLOCATABLE :: w_init !< initial vertical profile of w
405	REAL(wp), DIMENSION(:), ALLOCATABLE :: z_soil !< vertical levels in soil in dynamic input file, used for interpolation
406	REAL(wp), DIMENSION(:), ALLOCATABLE :: zu_atmos !< vertical levels at scalar grid in dynamic input file, used for interpolation
407	REAL(wp), DIMENSION(:), ALLOCATABLE :: zw_atmos !< vertical levels at w grid in dynamic input file, used for interpolation
408
409
410	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: msoil_3d !< initial 3d soil moisture provide by Inifor and interpolated onto soil grid
411	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: tsoil_3d !< initial 3d soil temperature provide by Inifor and interpolated onto soil grid
412
413	END TYPE init_type
414
415	!-- Data type for the general information of chemistry emissions, do not dependent on the particular chemical species
416	TYPE chem_emis_att_type
417
418	!-DIMENSIONS
419	INTEGER(iwp) :: nspec=0 !< number of chem species for which emission values are provided
420	INTEGER(iwp) :: ncat=0 !< number of emission categories
421	INTEGER(iwp) :: nvoc=0 !< number of VOCs components
422	INTEGER(iwp) :: npm=0 !< number of PMs components
423	INTEGER(iwp) :: nnox=2 !< number of NOx components: NO and NO2
424	INTEGER(iwp) :: nsox=2 !< number of SOx components: SO and SO4
425	INTEGER(iwp) :: nhoursyear !< number of hours of a specific year in the HOURLY mode
426	! of the default mode
427	INTEGER(iwp) :: nmonthdayhour !< number of month days and hours in the MDH mode
428	! of the default mode
429	INTEGER(iwp) :: dt_emission !< Number of emissions timesteps for one year
430	! in the pre-processed emissions case
431	!-- 1d emission input variables
432	CHARACTER (LEN=25),ALLOCATABLE, DIMENSION(:) :: pm_name !< Names of PMs components
433	CHARACTER (LEN=25),ALLOCATABLE, DIMENSION(:) :: cat_name !< Emission categories names
434	CHARACTER (LEN=25),ALLOCATABLE, DIMENSION(:) :: species_name !< Names of emission chemical species
435	CHARACTER (LEN=25),ALLOCATABLE, DIMENSION(:) :: voc_name !< Names of VOCs components
436	CHARACTER (LEN=25) :: units !< Units
437
438	INTEGER(iwp) :: i_hour !< indices for assigning the emission values at different timesteps
439	INTEGER(iwp),ALLOCATABLE, DIMENSION(:) :: cat_index !< Index of emission categories
440	INTEGER(iwp),ALLOCATABLE, DIMENSION(:) :: species_index !< Index of emission chem species
441
442	REAL(wp),ALLOCATABLE, DIMENSION(:) :: xm !< Molecular masses of emission chem species
443
444	!-- 2d emission input variables
445	REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: hourly_emis_time_factor !< Time factors for HOURLY emissions (DEFAULT mode)
446	REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: mdh_emis_time_factor !< Time factors for MDH emissions (DEFAULT mode)
447	REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: nox_comp !< Composition of NO and NO2
448	REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: sox_comp !< Composition of SO2 and SO4
449	REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: voc_comp !< Composition of different VOC components (number not fixed)
450
451	!-- 3d emission input variables
452	REAL(wp),ALLOCATABLE, DIMENSION(:,:,:) :: pm_comp !< Composition of different PMs components (number not fixed)
453
454	END TYPE chem_emis_att_type
455
456
457	!-- Data type for the values of chemistry emissions ERUSSO
458	TYPE chem_emis_val_type
459
460	!REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: stack_height !< stack height
461
462	!-- 3d emission input variables
463	REAL(wp),ALLOCATABLE, DIMENSION(:,:,:) :: default_emission_data !< Input Values emissions DEFAULT mode
464
465	!-- 4d emission input variables
466	REAL(wp),ALLOCATABLE, DIMENSION(:,:,:,:) :: preproc_emission_data !< Input Values emissions PRE-PROCESSED mode
467
468	END TYPE chem_emis_val_type
469
470	!
471	!-- Define data structures for different input data types.
472	!-- 8-bit Integer 2D
473	TYPE int_2d_8bit
474	INTEGER(KIND=1) :: fill = -127 !< fill value
475	INTEGER(KIND=1), DIMENSION(:,:), ALLOCATABLE :: var !< respective variable
476
477	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
478	END TYPE int_2d_8bit
479	!
480	!-- 8-bit Integer 3D
481	TYPE int_3d_8bit
482	INTEGER(KIND=1) :: fill = -127 !< fill value
483	INTEGER(KIND=1), DIMENSION(:,:,:), ALLOCATABLE :: var_3d !< respective variable
484
485	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
486	END TYPE int_3d_8bit
487	!
488	!-- 32-bit Integer 2D
489	TYPE int_2d_32bit
490	INTEGER(iwp) :: fill = -9999 !< fill value
491	INTEGER(iwp), DIMENSION(:,:), ALLOCATABLE :: var !< respective variable
492
493	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
494	END TYPE int_2d_32bit
495
496	!
497	!-- Define data type to read 2D real variables
498	TYPE real_2d
499	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
500
501	REAL(wp) :: fill = -9999.9_wp !< fill value
502	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: var !< respective variable
503	END TYPE real_2d
504
505	!
506	!-- Define data type to read 3D real variables
507	TYPE real_3d
508	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
509
510	INTEGER(iwp) :: nz !< number of grid points along vertical dimension
511
512	REAL(wp) :: fill = -9999.9_wp !< fill value
513	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: var !< respective variable
514	END TYPE real_3d
515	!
516	!-- Define data structure where the dimension and type of the input depends
517	!-- on the given level of detail.
518	!-- For buildings, the input is either 2D float, or 3d byte.
519	TYPE build_in
520	INTEGER(iwp) :: lod = 1 !< level of detail
521	INTEGER(KIND=1) :: fill2 = -127 !< fill value for lod = 2
522	INTEGER(iwp) :: nz !< number of vertical layers in file
523	INTEGER(KIND=1), DIMENSION(:,:,:), ALLOCATABLE :: var_3d !< 3d variable (lod = 2)
524
525	REAL(wp), DIMENSION(:), ALLOCATABLE :: z !< vertical coordinate for 3D building, used for consistency check
526
527	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
528
529	REAL(wp) :: fill1 = -9999.9_wp !< fill values for lod = 1
530	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: var_2d !< 2d variable (lod = 1)
531	END TYPE build_in
532
533	!
534	!-- For soil_type, the input is either 2D or 3D one-byte integer.
535	TYPE soil_in
536	INTEGER(iwp) :: lod = 1 !< level of detail
537	INTEGER(KIND=1) :: fill = -127 !< fill value for lod = 2
538	INTEGER(KIND=1), DIMENSION(:,:), ALLOCATABLE :: var_2d !< 2d variable (lod = 1)
539	INTEGER(KIND=1), DIMENSION(:,:,:), ALLOCATABLE :: var_3d !< 3d variable (lod = 2)
540
541	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
542	END TYPE soil_in
543
544	!
545	!-- Define data type for fractions between surface types
546	TYPE fracs
547	INTEGER(iwp) :: nf !< total number of fractions
548	INTEGER(iwp), DIMENSION(:), ALLOCATABLE :: nfracs !< dimension array for fraction
549
550	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
551
552	REAL(wp) :: fill = -9999.9_wp !< fill value
553	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: frac !< respective fraction between different surface types
554	END TYPE fracs
555	!
556	!-- Data type for parameter lists, Depending on the given level of detail,
557	!-- the input is 3D or 4D
558	TYPE pars
559	INTEGER(iwp) :: lod = 1 !< level of detail
560	INTEGER(iwp) :: np !< total number of parameters
561	INTEGER(iwp) :: nz !< vertical dimension - number of soil layers
562	INTEGER(iwp), DIMENSION(:), ALLOCATABLE :: layers !< dimension array for soil layers
563	INTEGER(iwp), DIMENSION(:), ALLOCATABLE :: pars !< dimension array for parameters
564
565	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
566
567	REAL(wp) :: fill = -9999.9_wp !< fill value
568	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: pars_xy !< respective parameters, level of detail = 1
569	REAL(wp), DIMENSION(:,:,:,:), ALLOCATABLE :: pars_xyz !< respective parameters, level of detail = 2
570	END TYPE pars
571	!
572	!-- Define type for global file attributes
573	!-- Please refer to the PALM data standard for a detailed description of each
574	!-- attribute.
575	TYPE global_atts_type
576	CHARACTER(LEN=12 ) :: acronym !< acronym of institution
577	CHARACTER(LEN=7) :: acronym_char = 'acronym' !< name of attribute
578	CHARACTER(LEN=200) :: author !< first name, last name, email adress
579	CHARACTER(LEN=6) :: author_char = 'author' !< name of attribute
580	CHARACTER(LEN=12 ) :: campaign = 'PALM-4U' !< name of campaign
581	CHARACTER(LEN=8) :: campaign_char = 'campaign' !< name of attribute
582	CHARACTER(LEN=200) :: comment !< comment to data
583	CHARACTER(LEN=7) :: comment_char = 'comment' !< name of attribute
584	CHARACTER(LEN=200) :: contact_person !< first name, last name, email adress
585	CHARACTER(LEN=14) :: contact_person_char = 'contact_person' !< name of attribute
586	CHARACTER(LEN=200) :: conventions = 'CF-1.7' !< netCDF convention
587	CHARACTER(LEN=11) :: conventions_char = 'Conventions' !< name of attribute
588	CHARACTER(LEN=23 ) :: creation_time !< creation time of data set
589	CHARACTER(LEN=13) :: creation_time_char = 'creation_time' !< name of attribute
590	CHARACTER(LEN=16 ) :: data_content !< content of data set
591	CHARACTER(LEN=12) :: data_content_char = 'data_content' !< name of attribute
592	CHARACTER(LEN=200) :: dependencies !< dependencies of data set
593	CHARACTER(LEN=12) :: dependencies_char = 'dependencies' !< name of attribute
594	CHARACTER(LEN=200) :: history !< information about data processing
595	CHARACTER(LEN=7) :: history_char = 'history' !< name of attribute
596	CHARACTER(LEN=200) :: institution !< name of responsible institution
597	CHARACTER(LEN=11) :: institution_char = 'institution' !< name of attribute
598	CHARACTER(LEN=200) :: keywords !< keywords of data set
599	CHARACTER(LEN=8) :: keywords_char = 'keywords' !< name of attribute
600	CHARACTER(LEN=200) :: licence !< licence of data set
601	CHARACTER(LEN=7) :: licence_char = 'licence' !< name of attribute
602	CHARACTER(LEN=200) :: location !< place which refers to data set
603	CHARACTER(LEN=8) :: location_char = 'location' !< name of attribute
604	CHARACTER(LEN=10) :: origin_lat_char = 'origin_lat' !< name of attribute
605	CHARACTER(LEN=10) :: origin_lon_char = 'origin_lon' !< name of attribute
606	CHARACTER(LEN=23 ) :: origin_time = '2000-01-01 00:00:00 +00' !< reference time
607	CHARACTER(LEN=11) :: origin_time_char = 'origin_time' !< name of attribute
608	CHARACTER(LEN=8) :: origin_x_char = 'origin_x' !< name of attribute
609	CHARACTER(LEN=8) :: origin_y_char = 'origin_y' !< name of attribute
610	CHARACTER(LEN=8) :: origin_z_char = 'origin_z' !< name of attribute
611	CHARACTER(LEN=12) :: palm_version_char = 'palm_version' !< name of attribute
612	CHARACTER(LEN=200) :: references !< literature referring to data set
613	CHARACTER(LEN=10) :: references_char = 'references' !< name of attribute
614	CHARACTER(LEN=14) :: rotation_angle_char = 'rotation_angle' !< name of attribute
615	CHARACTER(LEN=12 ) :: site !< name of model domain
616	CHARACTER(LEN=4) :: site_char = 'site' !< name of attribute
617	CHARACTER(LEN=200) :: source !< source of data set
618	CHARACTER(LEN=6) :: source_char = 'source' !< name of attribute
619	CHARACTER(LEN=200) :: title !< title of data set
620	CHARACTER(LEN=5) :: title_char = 'title' !< name of attribute
621	CHARACTER(LEN=7) :: version_char = 'version' !< name of attribute
622
623	INTEGER(iwp) :: version !< version of data set
624
625	REAL(wp) :: origin_lat !< latitude of lower left corner
626	REAL(wp) :: origin_lon !< longitude of lower left corner
627	REAL(wp) :: origin_x !< easting (UTM coordinate) of lower left corner
628	REAL(wp) :: origin_y !< northing (UTM coordinate) of lower left corner
629	REAL(wp) :: origin_z !< reference height
630	REAL(wp) :: palm_version !< PALM version of data set
631	REAL(wp) :: rotation_angle !< rotation angle of coordinate system of data set
632	END TYPE global_atts_type
633	!
634	!-- Define type for coordinate reference system (crs)
635	TYPE crs_type
636	CHARACTER(LEN=200) :: epsg_code = 'EPSG:25831' !< EPSG code
637	CHARACTER(LEN=200) :: grid_mapping_name = 'transverse_mercator' !< name of grid mapping
638	CHARACTER(LEN=200) :: long_name = 'coordinate reference system' !< name of variable crs
639	CHARACTER(LEN=200) :: units = 'm' !< unit of crs
640
641	REAL(wp) :: false_easting = 500000.0_wp !< false easting
642	REAL(wp) :: false_northing = 0.0_wp !< false northing
643	REAL(wp) :: inverse_flattening = 298.257223563_wp !< 1/f (default for WGS84)
644	REAL(wp) :: latitude_of_projection_origin = 0.0_wp !< latitude of projection origin
645	REAL(wp) :: longitude_of_central_meridian = 3.0_wp !< longitude of central meridian of UTM zone (default: zone 31)
646	REAL(wp) :: longitude_of_prime_meridian = 0.0_wp !< longitude of prime meridian
647	REAL(wp) :: scale_factor_at_central_meridian = 0.9996_wp !< scale factor of UTM coordinates
648	REAL(wp) :: semi_major_axis = 6378137.0_wp !< length of semi major axis (default for WGS84)
649	END TYPE crs_type
650
651	!
652	!-- Define variables
653	TYPE(crs_type) :: coord_ref_sys !< coordinate reference system
654
655	TYPE(dims_xy) :: dim_static !< data structure for x, y-dimension in static input file
656
657	TYPE(nest_offl_type) :: nest_offl !< data structure for data input at lateral and top boundaries (provided by Inifor)
658
659	TYPE(init_type) :: init_3d !< data structure for the initialization of the 3D flow and soil fields
660	TYPE(init_type) :: init_model !< data structure for the initialization of the model
661
662	!
663	!-- Define 2D variables of type NC_BYTE
664	TYPE(int_2d_8bit) :: albedo_type_f !< input variable for albedo type
665	TYPE(int_2d_8bit) :: building_type_f !< input variable for building type
666	TYPE(int_2d_8bit) :: pavement_type_f !< input variable for pavenment type
667	TYPE(int_2d_8bit) :: street_crossing_f !< input variable for water type
668	TYPE(int_2d_8bit) :: street_type_f !< input variable for water type
669	TYPE(int_2d_8bit) :: vegetation_type_f !< input variable for vegetation type
670	TYPE(int_2d_8bit) :: water_type_f !< input variable for water type
671	!
672	!-- Define 3D variables of type NC_BYTE
673	TYPE(int_3d_8bit) :: building_obstruction_f !< input variable for building obstruction
674	TYPE(int_3d_8bit) :: building_obstruction_full !< input variable for building obstruction
675	!
676	!-- Define 2D variables of type NC_INT
677	TYPE(int_2d_32bit) :: building_id_f !< input variable for building ID
678	!
679	!-- Define 2D variables of type NC_FLOAT
680	TYPE(real_2d) :: terrain_height_f !< input variable for terrain height
681	TYPE(real_2d) :: uvem_irradiance_f !< input variable for uvem irradiance lookup table
682	TYPE(real_2d) :: uvem_integration_f !< input variable for uvem integration
683	!
684	!-- Define 3D variables of type NC_FLOAT
685	TYPE(real_3d) :: basal_area_density_f !< input variable for basal area density - resolved vegetation
686	TYPE(real_3d) :: leaf_area_density_f !< input variable for leaf area density - resolved vegetation
687	TYPE(real_3d) :: root_area_density_lad_f !< input variable for root area density - resolved vegetation
688	TYPE(real_3d) :: root_area_density_lsm_f !< input variable for root area density - parametrized vegetation
689	TYPE(real_3d) :: uvem_radiance_f !< input variable for uvem radiance lookup table
690	TYPE(real_3d) :: uvem_projarea_f !< input variable for uvem projection area lookup table
691	!
692	!-- Define input variable for buildings
693	TYPE(build_in) :: buildings_f !< input variable for buildings
694	!
695	!-- Define input variables for soil_type
696	TYPE(soil_in) :: soil_type_f !< input variable for soil type
697
698	TYPE(fracs) :: surface_fraction_f !< input variable for surface fraction
699
700	TYPE(pars) :: albedo_pars_f !< input variable for albedo parameters
701	TYPE(pars) :: building_pars_f !< input variable for building parameters
702	TYPE(pars) :: pavement_pars_f !< input variable for pavement parameters
703	TYPE(pars) :: pavement_subsurface_pars_f !< input variable for pavement parameters
704	TYPE(pars) :: soil_pars_f !< input variable for soil parameters
705	TYPE(pars) :: vegetation_pars_f !< input variable for vegetation parameters
706	TYPE(pars) :: water_pars_f !< input variable for water parameters
707
708	TYPE(chem_emis_att_type) :: chem_emis_att !< Input Information of Chemistry Emission Data from netcdf
709	TYPE(chem_emis_val_type), ALLOCATABLE, DIMENSION(:) :: chem_emis !< Input Chemistry Emission Data from netcdf
710
711	CHARACTER(LEN=3) :: char_lod = 'lod' !< name of level-of-detail attribute in NetCDF file
712
713	CHARACTER(LEN=10) :: char_fill = '_FillValue' !< name of fill value attribute in NetCDF file
714
715	CHARACTER(LEN=100) :: input_file_static = 'PIDS_STATIC' !< Name of file which comprises static input data
716	CHARACTER(LEN=100) :: input_file_dynamic = 'PIDS_DYNAMIC' !< Name of file which comprises dynamic input data
717	CHARACTER(LEN=100) :: input_file_chem = 'PIDS_CHEM' !< Name of file which comprises chemistry input data
718	CHARACTER(LEN=100) :: input_file_uvem = 'PIDS_UVEM' !< Name of file which comprises static uv_exposure model input data
719	CHARACTER(LEN=100) :: input_file_vm = 'PIDS_VM' !< Name of file which comprises virtual measurement data
720
721	CHARACTER (LEN=25), ALLOCATABLE, DIMENSION(:) :: string_values !< output of string variables read from netcdf input files
722
723	INTEGER(iwp) :: id_emis !< NetCDF id of input file for chemistry emissions: TBD: It has to be removed
724
725	INTEGER(iwp) :: nc_stat !< return value of nf90 function call
726
727	LOGICAL :: input_pids_static = .FALSE. !< Flag indicating whether Palm-input-data-standard file containing static information exists
728	LOGICAL :: input_pids_dynamic = .FALSE. !< Flag indicating whether Palm-input-data-standard file containing dynamic information exists
729	LOGICAL :: input_pids_chem = .FALSE. !< Flag indicating whether Palm-input-data-standard file containing chemistry information exists
730	LOGICAL :: input_pids_uvem = .FALSE. !< Flag indicating whether uv-expoure-model input file containing static information exists
731	LOGICAL :: input_pids_vm = .FALSE. !< Flag indicating whether input file for virtual measurements exist
732
733	LOGICAL :: collective_read = .FALSE. !< Enable NetCDF collective read
734
735	TYPE(global_atts_type) :: input_file_atts !< global attributes of input file
736
737	SAVE
738
739	PRIVATE
740
741	INTERFACE netcdf_data_input_interpolate
742	MODULE PROCEDURE netcdf_data_input_interpolate_1d
743	MODULE PROCEDURE netcdf_data_input_interpolate_1d_soil
744	MODULE PROCEDURE netcdf_data_input_interpolate_2d
745	MODULE PROCEDURE netcdf_data_input_interpolate_3d
746	END INTERFACE netcdf_data_input_interpolate
747
748	INTERFACE netcdf_data_input_check_dynamic
749	MODULE PROCEDURE netcdf_data_input_check_dynamic
750	END INTERFACE netcdf_data_input_check_dynamic
751
752	INTERFACE netcdf_data_input_check_static
753	MODULE PROCEDURE netcdf_data_input_check_static
754	END INTERFACE netcdf_data_input_check_static
755
756	INTERFACE netcdf_data_input_chemistry_data
757	MODULE PROCEDURE netcdf_data_input_chemistry_data
758	END INTERFACE netcdf_data_input_chemistry_data
759
760	INTERFACE netcdf_data_input_get_dimension_length
761	MODULE PROCEDURE netcdf_data_input_get_dimension_length
762	END INTERFACE netcdf_data_input_get_dimension_length
763
764	INTERFACE netcdf_data_input_inquire_file
765	MODULE PROCEDURE netcdf_data_input_inquire_file
766	END INTERFACE netcdf_data_input_inquire_file
767
768	INTERFACE netcdf_data_input_init
769	MODULE PROCEDURE netcdf_data_input_init
770	END INTERFACE netcdf_data_input_init
771
772	INTERFACE netcdf_data_input_att
773	MODULE PROCEDURE netcdf_data_input_att_int
774	MODULE PROCEDURE netcdf_data_input_att_real
775	MODULE PROCEDURE netcdf_data_input_att_string
776	END INTERFACE netcdf_data_input_att
777
778	INTERFACE netcdf_data_input_init_3d
779	MODULE PROCEDURE netcdf_data_input_init_3d
780	END INTERFACE netcdf_data_input_init_3d
781
782	INTERFACE netcdf_data_input_init_lsm
783	MODULE PROCEDURE netcdf_data_input_init_lsm
784	END INTERFACE netcdf_data_input_init_lsm
785
786	INTERFACE netcdf_data_input_offline_nesting
787	MODULE PROCEDURE netcdf_data_input_offline_nesting
788	END INTERFACE netcdf_data_input_offline_nesting
789
790	INTERFACE netcdf_data_input_surface_data
791	MODULE PROCEDURE netcdf_data_input_surface_data
792	END INTERFACE netcdf_data_input_surface_data
793
794	INTERFACE netcdf_data_input_var
795	MODULE PROCEDURE netcdf_data_input_var_char
796	MODULE PROCEDURE netcdf_data_input_var_real_1d
797	MODULE PROCEDURE netcdf_data_input_var_real_2d
798	END INTERFACE netcdf_data_input_var
799
800	INTERFACE netcdf_data_input_uvem
801	MODULE PROCEDURE netcdf_data_input_uvem
802	END INTERFACE netcdf_data_input_uvem
803
804	INTERFACE get_variable
805	MODULE PROCEDURE get_variable_1d_char
806	MODULE PROCEDURE get_variable_1d_int
807	MODULE PROCEDURE get_variable_1d_real
808	MODULE PROCEDURE get_variable_2d_int8
809	MODULE PROCEDURE get_variable_2d_int32
810	MODULE PROCEDURE get_variable_2d_real
811	MODULE PROCEDURE get_variable_3d_int8
812	MODULE PROCEDURE get_variable_3d_real
813	MODULE PROCEDURE get_variable_3d_real_dynamic
814	MODULE PROCEDURE get_variable_4d_to_3d_real
815	MODULE PROCEDURE get_variable_4d_real
816	MODULE PROCEDURE get_variable_5d_to_4d_real
817	MODULE PROCEDURE get_variable_string
818	END INTERFACE get_variable
819
820	INTERFACE get_variable_pr
821	MODULE PROCEDURE get_variable_pr
822	END INTERFACE get_variable_pr
823
824	INTERFACE get_attribute
825	MODULE PROCEDURE get_attribute_real
826	MODULE PROCEDURE get_attribute_int8
827	MODULE PROCEDURE get_attribute_int32
828	MODULE PROCEDURE get_attribute_string
829	END INTERFACE get_attribute
830
831	!
832	!-- Public variables
833	PUBLIC albedo_pars_f, albedo_type_f, basal_area_density_f, buildings_f, &
834	building_id_f, building_pars_f, building_type_f, &
835	chem_emis, chem_emis_att, chem_emis_att_type, chem_emis_val_type, &
836	coord_ref_sys, &
837	init_3d, init_model, input_file_atts, input_file_static, &
838	input_pids_static, &
839	input_pids_dynamic, input_pids_vm, input_file_vm, &
840	leaf_area_density_f, nest_offl, &
841	pavement_pars_f, pavement_subsurface_pars_f, pavement_type_f, &
842	root_area_density_lad_f, root_area_density_lsm_f, soil_pars_f, &
843	soil_type_f, street_crossing_f, street_type_f, surface_fraction_f, &
844	terrain_height_f, vegetation_pars_f, vegetation_type_f, &
845	water_pars_f, water_type_f
846	!
847	!-- Public uv exposure variables
848	PUBLIC building_obstruction_f, input_file_uvem, input_pids_uvem, &
849	netcdf_data_input_uvem, &
850	uvem_integration_f, uvem_irradiance_f, &
851	uvem_projarea_f, uvem_radiance_f
852
853	!
854	!-- Public subroutines
855	PUBLIC netcdf_data_input_check_dynamic, netcdf_data_input_check_static, &
856	netcdf_data_input_chemistry_data, &
857	netcdf_data_input_get_dimension_length, &
858	netcdf_data_input_inquire_file, &
859	netcdf_data_input_init, netcdf_data_input_init_lsm, &
860	netcdf_data_input_init_3d, netcdf_data_input_att, &
861	netcdf_data_input_interpolate, netcdf_data_input_offline_nesting, &
862	netcdf_data_input_surface_data, netcdf_data_input_topo, &
863	netcdf_data_input_var, get_attribute, get_variable, open_read_file
864
865
866	CONTAINS
867
868	!------------------------------------------------------------------------------!
869	! Description:
870	! ------------
871	!> Inquires whether NetCDF input files according to Palm-input-data standard
872	!> exist. Moreover, basic checks are performed.
873	!------------------------------------------------------------------------------!
874	SUBROUTINE netcdf_data_input_inquire_file
875
876	USE control_parameters, &
877	ONLY: topo_no_distinct
878
879	IMPLICIT NONE
880
881	#if defined ( __netcdf )
882	INQUIRE( FILE = TRIM( input_file_static ) // TRIM( coupling_char ), &
883	EXIST = input_pids_static )
884	INQUIRE( FILE = TRIM( input_file_dynamic ) // TRIM( coupling_char ), &
885	EXIST = input_pids_dynamic )
886	INQUIRE( FILE = TRIM( input_file_chem ) // TRIM( coupling_char ), &
887	EXIST = input_pids_chem )
888	INQUIRE( FILE = TRIM( input_file_uvem ) // TRIM( coupling_char ), &
889	EXIST = input_pids_uvem )
890	INQUIRE( FILE = TRIM( input_file_vm ) // TRIM( coupling_char ), &
891	EXIST = input_pids_vm )
892	#endif
893
894	!
895	!-- As long as topography can be input via ASCII format, no distinction
896	!-- between building and terrain can be made. This case, classify all
897	!-- surfaces as default type. Same in case land-surface and urban-surface
898	!-- model are not applied.
899	IF ( .NOT. input_pids_static ) THEN
900	topo_no_distinct = .TRUE.
901	ENDIF
902
903	END SUBROUTINE netcdf_data_input_inquire_file
904
905	!------------------------------------------------------------------------------!
906	! Description:
907	! ------------
908	!> Reads global attributes and coordinate reference system required for
909	!> initialization of the model.
910	!------------------------------------------------------------------------------!
911	SUBROUTINE netcdf_data_input_init
912
913	IMPLICIT NONE
914
915	INTEGER(iwp) :: id_mod !< NetCDF id of input file
916	INTEGER(iwp) :: var_id_crs !< NetCDF id of variable crs
917
918	IF ( .NOT. input_pids_static ) RETURN
919
920	#if defined ( __netcdf )
921	!
922	!-- Open file in read-only mode
923	CALL open_read_file( TRIM( input_file_static ) // &
924	TRIM( coupling_char ), id_mod )
925	!
926	!-- Read global attributes
927	CALL get_attribute( id_mod, input_file_atts%origin_lat_char, &
928	input_file_atts%origin_lat, .TRUE. )
929
930	CALL get_attribute( id_mod, input_file_atts%origin_lon_char, &
931	input_file_atts%origin_lon, .TRUE. )
932
933	CALL get_attribute( id_mod, input_file_atts%origin_time_char, &
934	input_file_atts%origin_time, .TRUE. )
935
936	CALL get_attribute( id_mod, input_file_atts%origin_x_char, &
937	input_file_atts%origin_x, .TRUE. )
938
939	CALL get_attribute( id_mod, input_file_atts%origin_y_char, &
940	input_file_atts%origin_y, .TRUE. )
941
942	CALL get_attribute( id_mod, input_file_atts%origin_z_char, &
943	input_file_atts%origin_z, .TRUE. )
944
945	CALL get_attribute( id_mod, input_file_atts%rotation_angle_char, &
946	input_file_atts%rotation_angle, .TRUE. )
947
948	CALL get_attribute( id_mod, input_file_atts%author_char, input_file_atts%author, .TRUE., no_abort=.FALSE. )
949	CALL get_attribute( id_mod, input_file_atts%contact_person_char, input_file_atts%contact_person, .TRUE., no_abort=.FALSE. )
950	CALL get_attribute( id_mod, input_file_atts%institution_char, input_file_atts%institution, .TRUE., no_abort=.FALSE. )
951	CALL get_attribute( id_mod, input_file_atts%acronym_char, input_file_atts%acronym, .TRUE., no_abort=.FALSE. )
952
953	CALL get_attribute( id_mod, input_file_atts%campaign_char, input_file_atts%campaign, .TRUE., no_abort=.FALSE. )
954	CALL get_attribute( id_mod, input_file_atts%location_char, input_file_atts%location, .TRUE., no_abort=.FALSE. )
955	CALL get_attribute( id_mod, input_file_atts%site_char, input_file_atts%site, .TRUE., no_abort=.FALSE. )
956
957	CALL get_attribute( id_mod, input_file_atts%source_char, input_file_atts%source, .TRUE., no_abort=.FALSE. )
958	CALL get_attribute( id_mod, input_file_atts%references_char, input_file_atts%references, .TRUE., no_abort=.FALSE. )
959	CALL get_attribute( id_mod, input_file_atts%keywords_char, input_file_atts%keywords, .TRUE., no_abort=.FALSE. )
960	CALL get_attribute( id_mod, input_file_atts%licence_char, input_file_atts%licence, .TRUE., no_abort=.FALSE. )
961	CALL get_attribute( id_mod, input_file_atts%comment_char, input_file_atts%comment, .TRUE., no_abort=.FALSE. )
962	!
963	!-- Read coordinate reference system if available
964	nc_stat = NF90_INQ_VARID( id_mod, 'crs', var_id_crs )
965	IF ( nc_stat == NF90_NOERR ) THEN
966	CALL get_attribute( id_mod, 'epsg_code', &
967	coord_ref_sys%epsg_code, &
968	.FALSE., 'crs' )
969	CALL get_attribute( id_mod, 'false_easting', &
970	coord_ref_sys%false_easting, &
971	.FALSE., 'crs' )
972	CALL get_attribute( id_mod, 'false_northing', &
973	coord_ref_sys%false_northing, &
974	.FALSE., 'crs' )
975	CALL get_attribute( id_mod, 'grid_mapping_name', &
976	coord_ref_sys%grid_mapping_name, &
977	.FALSE., 'crs' )
978	CALL get_attribute( id_mod, 'inverse_flattening', &
979	coord_ref_sys%inverse_flattening, &
980	.FALSE., 'crs' )
981	CALL get_attribute( id_mod, 'latitude_of_projection_origin', &
982	coord_ref_sys%latitude_of_projection_origin, &
983	.FALSE., 'crs' )
984	CALL get_attribute( id_mod, 'long_name', &
985	coord_ref_sys%long_name, &
986	.FALSE., 'crs' )
987	CALL get_attribute( id_mod, 'longitude_of_central_meridian', &
988	coord_ref_sys%longitude_of_central_meridian, &
989	.FALSE., 'crs' )
990	CALL get_attribute( id_mod, 'longitude_of_prime_meridian', &
991	coord_ref_sys%longitude_of_prime_meridian, &
992	.FALSE., 'crs' )
993	CALL get_attribute( id_mod, 'scale_factor_at_central_meridian', &
994	coord_ref_sys%scale_factor_at_central_meridian, &
995	.FALSE., 'crs' )
996	CALL get_attribute( id_mod, 'semi_major_axis', &
997	coord_ref_sys%semi_major_axis, &
998	.FALSE., 'crs' )
999	CALL get_attribute( id_mod, 'units', &
1000	coord_ref_sys%units, &
1001	.FALSE., 'crs' )
1002	ELSE
1003	!
1004	!-- Calculate central meridian from origin_lon
1005	coord_ref_sys%longitude_of_central_meridian = &
1006	CEILING( input_file_atts%origin_lon / 6.0_wp ) * 6.0_wp - 3.0_wp
1007	ENDIF
1008	!
1009	!-- Finally, close input file
1010	CALL close_input_file( id_mod )
1011	#endif
1012	!
1013	!-- Copy latitude, longitude, origin_z, rotation angle on init type
1014	init_model%latitude = input_file_atts%origin_lat
1015	init_model%longitude = input_file_atts%origin_lon
1016	init_model%origin_time = input_file_atts%origin_time
1017	init_model%origin_x = input_file_atts%origin_x
1018	init_model%origin_y = input_file_atts%origin_y
1019	init_model%origin_z = input_file_atts%origin_z
1020	init_model%rotation_angle = input_file_atts%rotation_angle
1021
1022	!
1023	!-- In case of nested runs, each model domain might have different longitude
1024	!-- and latitude, which would result in different Coriolis parameters and
1025	!-- sun-zenith angles. To avoid this, longitude and latitude in each model
1026	!-- domain will be set to the values of the root model. Please note, this
1027	!-- synchronization is required already here.
1028	#if defined( __parallel )
1029	CALL MPI_BCAST( init_model%latitude, 1, MPI_REAL, 0, &
1030	MPI_COMM_WORLD, ierr )
1031	CALL MPI_BCAST( init_model%longitude, 1, MPI_REAL, 0, &
1032	MPI_COMM_WORLD, ierr )
1033	#endif
1034
1035	END SUBROUTINE netcdf_data_input_init
1036
1037	!------------------------------------------------------------------------------!
1038	! Description:
1039	! ------------
1040	!> Read an array of characters.
1041	!------------------------------------------------------------------------------!
1042	SUBROUTINE netcdf_data_input_var_char( val, search_string, id_mod )
1043
1044	IMPLICIT NONE
1045
1046	CHARACTER(LEN=*) :: search_string !< name of the variable
1047	CHARACTER(LEN=*), DIMENSION(:) :: val !< variable which should be read
1048
1049	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1050
1051	#if defined ( __netcdf )
1052	!
1053	!-- Read variable
1054	CALL get_variable( id_mod, search_string, val )
1055	#endif
1056
1057	END SUBROUTINE netcdf_data_input_var_char
1058
1059	!------------------------------------------------------------------------------!
1060	! Description:
1061	! ------------
1062	!> Read an 1D array of REAL values.
1063	!------------------------------------------------------------------------------!
1064	SUBROUTINE netcdf_data_input_var_real_1d( val, search_string, id_mod )
1065
1066	IMPLICIT NONE
1067
1068	CHARACTER(LEN=*) :: search_string !< name of the variable
1069
1070	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1071
1072	REAL(wp), DIMENSION(:) :: val !< variable which should be read
1073
1074	#if defined ( __netcdf )
1075	!
1076	!-- Read variable
1077	CALL get_variable( id_mod, search_string, val )
1078	#endif
1079
1080	END SUBROUTINE netcdf_data_input_var_real_1d
1081
1082	!------------------------------------------------------------------------------!
1083	! Description:
1084	! ------------
1085	!> Read an 1D array of REAL values.
1086	!------------------------------------------------------------------------------!
1087	SUBROUTINE netcdf_data_input_var_real_2d( val, search_string, &
1088	id_mod, d1s, d1e, d2s, d2e )
1089
1090	IMPLICIT NONE
1091
1092	CHARACTER(LEN=*) :: search_string !< name of the variable
1093
1094	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1095	INTEGER(iwp) :: d1e !< end index of first dimension to be read
1096	INTEGER(iwp) :: d2e !< end index of second dimension to be read
1097	INTEGER(iwp) :: d1s !< start index of first dimension to be read
1098	INTEGER(iwp) :: d2s !< start index of second dimension to be read
1099
1100	REAL(wp), DIMENSION(:,:) :: val !< variable which should be read
1101
1102	#if defined ( __netcdf )
1103	!
1104	!-- Read character variable
1105	CALL get_variable( id_mod, search_string, val, d1s, d1e, d2s, d2e )
1106	#endif
1107
1108	END SUBROUTINE netcdf_data_input_var_real_2d
1109
1110	!------------------------------------------------------------------------------!
1111	! Description:
1112	! ------------
1113	!> Read a global string attribute
1114	!------------------------------------------------------------------------------!
1115	SUBROUTINE netcdf_data_input_att_string( val, search_string, id_mod, &
1116	input_file, global, openclose, &
1117	variable_name )
1118
1119	IMPLICIT NONE
1120
1121	CHARACTER(LEN=*) :: search_string !< name of the attribue
1122	CHARACTER(LEN=*) :: val !< attribute
1123
1124	CHARACTER(LEN=*) :: input_file !< name of input file
1125	CHARACTER(LEN=*) :: openclose !< string indicating whether NetCDF needs to be opend or closed
1126	CHARACTER(LEN=*) :: variable_name !< string indicating whether NetCDF needs to be opend or closed
1127
1128	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1129
1130	LOGICAL :: global !< flag indicating a global or a variable's attribute
1131
1132	#if defined ( __netcdf )
1133	!
1134	!-- Open file in read-only mode if necessary
1135	IF ( openclose == 'open' ) THEN
1136	CALL open_read_file( TRIM( input_file ) // TRIM( coupling_char ), &
1137	id_mod )
1138	ENDIF
1139	!
1140	!-- Read global attribute
1141	IF ( global ) THEN
1142	CALL get_attribute( id_mod, search_string, val, global )
1143	!
1144	!-- Read variable attribute
1145	ELSE
1146	CALL get_attribute( id_mod, search_string, val, global, variable_name )
1147	ENDIF
1148	!
1149	!-- Close input file
1150	IF ( openclose == 'close' ) CALL close_input_file( id_mod )
1151	#endif
1152
1153	END SUBROUTINE netcdf_data_input_att_string
1154
1155	!------------------------------------------------------------------------------!
1156	! Description:
1157	! ------------
1158	!> Read a global integer attribute
1159	!------------------------------------------------------------------------------!
1160	SUBROUTINE netcdf_data_input_att_int( val, search_string, id_mod, &
1161	input_file, global, openclose, &
1162	variable_name )
1163
1164	IMPLICIT NONE
1165
1166	CHARACTER(LEN=*) :: search_string !< name of the attribue
1167
1168	CHARACTER(LEN=*) :: input_file !< name of input file
1169	CHARACTER(LEN=*) :: openclose !< string indicating whether NetCDF needs to be opend or closed
1170	CHARACTER(LEN=*) :: variable_name !< string indicating whether NetCDF needs to be opend or closed
1171
1172	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1173	INTEGER(iwp) :: val !< value of the attribute
1174
1175	LOGICAL :: global !< flag indicating a global or a variable's attribute
1176
1177	#if defined ( __netcdf )
1178	!
1179	!-- Open file in read-only mode
1180	IF ( openclose == 'open' ) THEN
1181	CALL open_read_file( TRIM( input_file ) // TRIM( coupling_char ), &
1182	id_mod )
1183	ENDIF
1184	!
1185	!-- Read global attribute
1186	IF ( global ) THEN
1187	CALL get_attribute( id_mod, search_string, val, global )
1188	!
1189	!-- Read variable attribute
1190	ELSE
1191	CALL get_attribute( id_mod, search_string, val, global, variable_name )
1192	ENDIF
1193	!
1194	!-- Finally, close input file
1195	IF ( openclose == 'close' ) CALL close_input_file( id_mod )
1196	#endif
1197
1198	END SUBROUTINE netcdf_data_input_att_int
1199
1200	!------------------------------------------------------------------------------!
1201	! Description:
1202	! ------------
1203	!> Read a global real attribute
1204	!------------------------------------------------------------------------------!
1205	SUBROUTINE netcdf_data_input_att_real( val, search_string, id_mod, &
1206	input_file, global, openclose, &
1207	variable_name )
1208
1209	IMPLICIT NONE
1210
1211	CHARACTER(LEN=*) :: search_string !< name of the attribue
1212
1213	CHARACTER(LEN=*) :: input_file !< name of input file
1214	CHARACTER(LEN=*) :: openclose !< string indicating whether NetCDF needs to be opend or closed
1215	CHARACTER(LEN=*) :: variable_name !< string indicating whether NetCDF needs to be opend or closed
1216
1217	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1218
1219	LOGICAL :: global !< flag indicating a global or a variable's attribute
1220
1221	REAL(wp) :: val !< value of the attribute
1222
1223	#if defined ( __netcdf )
1224	!
1225	!-- Open file in read-only mode
1226	IF ( openclose == 'open' ) THEN
1227	CALL open_read_file( TRIM( input_file ) // TRIM( coupling_char ), &
1228	id_mod )
1229	ENDIF
1230	!
1231	!-- Read global attribute
1232	IF ( global ) THEN
1233	CALL get_attribute( id_mod, search_string, val, global )
1234	!
1235	!-- Read variable attribute
1236	ELSE
1237	CALL get_attribute( id_mod, search_string, val, global, variable_name )
1238	ENDIF
1239	!
1240	!-- Finally, close input file
1241	IF ( openclose == 'close' ) CALL close_input_file( id_mod )
1242	#endif
1243
1244	END SUBROUTINE netcdf_data_input_att_real
1245
1246	!------------------------------------------------------------------------------!
1247	! Description:
1248	! ------------
1249	!> Reads Chemistry NETCDF Input data, such as emission values, emission species, etc. .
1250	!------------------------------------------------------------------------------!
1251	SUBROUTINE netcdf_data_input_chemistry_data(emt_att,emt)
1252
1253	USE chem_modules, &
1254	ONLY: do_emis, mode_emis, time_fac_type, &
1255	surface_csflux_name
1256
1257	USE control_parameters, &
1258	ONLY: message_string
1259
1260	USE indices, &
1261	ONLY: nz, nx, ny, nxl, nxr, nys, nyn, nzb, nzt
1262
1263	IMPLICIT NONE
1264
1265	TYPE(chem_emis_att_type), INTENT(INOUT) :: emt_att
1266	TYPE(chem_emis_val_type), ALLOCATABLE, DIMENSION(:), INTENT(INOUT) :: emt
1267
1268	CHARACTER (LEN=80) :: units='' !< units of chemistry inputs
1269
1270	INTEGER(iwp) :: ispec !< index for number of emission species in input
1271
1272	INTEGER(iwp), ALLOCATABLE, DIMENSION(:) :: dum_var !< value of variable read from netcdf input
1273	INTEGER(iwp) :: errno !< error number NF90_???? function
1274	INTEGER(iwp) :: id_var !< variable id
1275	! INTEGER(iwp) :: id_emis !< NetCDF id of input file
1276	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
1277	INTEGER(iwp) :: len_dims,len_dims_2 !< Length of dimensions
1278
1279	INTEGER(iwp) :: max_string_length=25 !< Variable for the maximum length of a string
1280
1281	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names !< Name of Variables
1282
1283	REAL(wp), ALLOCATABLE, DIMENSION(:,:,:) :: dum_var_3d !< variable for storing temporary data of 3-dimensional
1284	! variables read from netcdf for chemistry emissions
1285
1286	REAL(wp), ALLOCATABLE, DIMENSION(:,:,:,:) :: dum_var_4d !< variable for storing temporary data of 5-dimensional
1287	!< variables read from netcdf for chemistry emissions
1288	!--
1289	!> Start the processing of the data
1290	CALL location_message( 'starting allocation of chemistry emissions arrays', .FALSE. )
1291
1292	!> Parameterized mode of the emissions
1293	IF (TRIM(mode_emis)=="PARAMETERIZED" .OR. TRIM(mode_emis)=="parameterized") THEN
1294
1295	ispec=1
1296	emt_att%nspec=0
1297
1298	!number of species
1299	DO WHILE (TRIM( surface_csflux_name( ispec ) ) /= 'novalue' )
1300
1301	emt_att%nspec=emt_att%nspec+1
1302	ispec=ispec+1
1303
1304	ENDDO
1305
1306	!-- allocate emission values data type arrays
1307	ALLOCATE(emt(emt_att%nspec))
1308
1309	!-- Read EMISSION SPECIES NAMES
1310
1311	!Assign values
1312	ALLOCATE(emt_att%species_name(emt_att%nspec))
1313
1314	DO ispec=1,emt_att%nspec
1315	emt_att%species_name(ispec) = TRIM(surface_csflux_name(ispec))
1316	ENDDO
1317
1318
1319	!> DEFAULT AND PRE-PROCESSED MODE
1320	ELSE
1321
1322	#if defined ( __netcdf )
1323	IF ( .NOT. input_pids_chem ) RETURN
1324
1325	!-- Open file in read-only mode
1326	CALL open_read_file( TRIM( input_file_chem ) // &
1327	TRIM( coupling_char ), id_emis )
1328	!-- inquire number of variables
1329	CALL inquire_num_variables( id_emis, num_vars )
1330
1331	!-- Get General Dimension Lengths: only number of species and number of categories.
1332	! the other dimensions depend on the mode of the emissions or on the presence of specific components
1333	!nspecies
1334	CALL netcdf_data_input_get_dimension_length( id_emis, emt_att%nspec, 'nspecies' )
1335
1336
1337	!-- Allocate emission values data type arrays
1338	ALLOCATE(emt(1:emt_att%nspec))
1339
1340
1341	!-- Read EMISSION SPECIES NAMES
1342	!Allocate Arrays
1343	ALLOCATE(emt_att%species_name(emt_att%nspec))
1344
1345	!Call get Variable
1346	CALL get_variable( id_emis, 'emission_name', string_values, emt_att%nspec )
1347	emt_att%species_name=string_values
1348	! If allocated, Deallocate var_string, an array only used for reading-in strings
1349	IF (ALLOCATED(string_values)) DEALLOCATE(string_values)
1350
1351	!-- Read EMISSION SPECIES INDEX
1352	!Allocate Arrays
1353	ALLOCATE(emt_att%species_index(emt_att%nspec))
1354	!Call get Variable
1355	CALL get_variable( id_emis, 'emission_index', emt_att%species_index )
1356
1357
1358	!-- Now the routine has to distinguish between DEFAULT and PRE-PROCESSED chemistry emission modes
1359
1360	IF (TRIM(mode_emis)=="DEFAULT" .OR. TRIM(mode_emis)=="default") THEN
1361
1362	!number of categories
1363	CALL netcdf_data_input_get_dimension_length( id_emis, emt_att%ncat, 'ncat' )
1364
1365	!-- Read EMISSION CATEGORIES INDEX
1366	!Allocate Arrays
1367	ALLOCATE(emt_att%cat_index(emt_att%ncat))
1368	!Call get Variable
1369	CALL get_variable( id_emis, 'emission_cat_index', emt_att%cat_index )
1370
1371
1372	DO ispec=1,emt_att%nspec
1373	!-- EMISSION_VOC_NAME (1-DIMENSIONAL)
1374	IF (TRIM(emt_att%species_name(ispec))=="VOC" .OR. TRIM(emt_att%species_name(ispec))=="voc") THEN
1375	!Allocate Array
1376	CALL netcdf_data_input_get_dimension_length( id_emis, emt_att%nvoc, 'nvoc' )
1377	ALLOCATE(emt_att%voc_name(1:emt_att%nvoc))
1378	!Read-in Variable
1379	CALL get_variable( id_emis,"emission_voc_name",string_values, emt_att%nvoc)
1380	emt_att%voc_name=string_values
1381	IF (ALLOCATED(string_values)) DEALLOCATE(string_values)
1382
1383	!-- COMPOSITION VOC (2-DIMENSIONAL)
1384	!Allocate Array
1385	ALLOCATE(emt_att%voc_comp(1:emt_att%ncat,1:emt_att%nvoc))
1386	!Read-in Variable
1387	! CALL get_variable(id_emis,"composition_voc",emt%voc_comp,1,1,emt%ncat,emt%nvoc)
1388	CALL get_variable(id_emis,"composition_voc",emt_att%voc_comp,1,emt_att%ncat,1,emt_att%nvoc)
1389	ENDIF
1390
1391	!-- EMISSION_PM_NAME (1-DIMENSIONAL)
1392	IF (TRIM(emt_att%species_name(ispec))=="PM" .OR. TRIM(emt_att%species_name(ispec))=="pm") THEN
1393	CALL netcdf_data_input_get_dimension_length( id_emis, emt_att%npm, 'npm' )
1394	ALLOCATE(emt_att%pm_name(1:emt_att%npm))
1395	!Read-in Variable
1396	CALL get_variable( id_emis,"pm_name",string_values, emt_att%npm)
1397	emt_att%pm_name=string_values
1398	IF (ALLOCATED(string_values)) DEALLOCATE(string_values)
1399
1400	!-- COMPOSITION PM (3-DIMENSIONAL)
1401	!Allocate
1402	len_dims=3 !> number of PMs: PM1, PM2.5 and PM10
1403	ALLOCATE(emt_att%pm_comp(1:emt_att%ncat,1:emt_att%npm,1:len_dims))
1404	!Read-in Variable
1405	CALL get_variable(id_emis,"composition_pm",emt_att%pm_comp,1,emt_att%ncat,1,emt_att%npm,1,len_dims)
1406	ENDIF
1407
1408	!-- COMPOSITION_NOX (2-DIMENSIONAL)
1409	IF (TRIM(emt_att%species_name(ispec))=="NOx" .OR. TRIM(emt_att%species_name(ispec))=="nox") THEN
1410	!Allocate array
1411	ALLOCATE(emt_att%nox_comp(1:emt_att%ncat,1:emt_att%nnox))
1412	!Read-in Variable
1413	CALL get_variable(id_emis,"composition_nox",emt_att%nox_comp,1,emt_att%ncat,1,emt_att%nnox)
1414	ENDIF
1415
1416	!-- COMPOSITION-SOX (2-DIMENSIONAL)
1417	IF (TRIM(emt_att%species_name(ispec))=="SOx" .OR. TRIM(emt_att%species_name(ispec))=="sox") THEN
1418	ALLOCATE(emt_att%sox_comp(1:emt_att%ncat,1:emt_att%nsox))
1419	!Read-in Variable
1420	CALL get_variable(id_emis,"composition_sox",emt_att%sox_comp,1,emt_att%ncat,1,emt_att%nsox)
1421	ENDIF
1422	ENDDO !>ispec
1423
1424	!-- For reading the emission time factors, the distinction between HOUR and MDH data is necessary
1425
1426	!-- EMISSION_TIME_SCALING_FACTORS
1427	!-- HOUR
1428	IF (TRIM(time_fac_type)=="HOUR" .OR. TRIM(time_fac_type)=="hour") THEN
1429	!-- Allocate Array
1430	CALL netcdf_data_input_get_dimension_length( id_emis, emt_att%nhoursyear, 'nhoursyear' )
1431	ALLOCATE(emt_att%hourly_emis_time_factor(1:emt_att%ncat,1:emt_att%nhoursyear))
1432	!Read-in Variable
1433	CALL get_variable(id_emis,"emission_time_factors",emt_att%hourly_emis_time_factor,1, &
1434	emt_att%ncat,1,emt_att%nhoursyear)
1435
1436	!-- MDH
1437	ELSE IF (TRIM(time_fac_type) == "MDH" .OR. TRIM(time_fac_type) == "mdh") THEN
1438	!-- Allocate Array
1439	CALL netcdf_data_input_get_dimension_length( id_emis, emt_att%nmonthdayhour, 'nmonthdayhour' )
1440	ALLOCATE(emt_att%mdh_emis_time_factor(1:emt_att%ncat,1:emt_att%nmonthdayhour))
1441	!-- Read-in Variable
1442	CALL get_variable(id_emis,"emission_time_factors",emt_att%mdh_emis_time_factor,1, &
1443	emt_att%ncat,1,emt_att%nmonthdayhour)
1444
1445	ELSE
1446
1447	message_string = 'We are in the DEFAULT chemistry emissions mode: ' // &
1448	' !no time-factor type specified!' // &
1449	'Please, specify the value of time_fac_type:' // &
1450	' either "MDH" or "HOUR"'
1451	CALL message( 'netcdf_data_input_chemistry_data', 'CM0200', 2, 2, 0, 6, 0 )
1452
1453
1454	ENDIF
1455
1456	!-- Finally read-in the emission values and their units (DEFAULT mode)
1457
1458	DO ispec=1,emt_att%nspec
1459
1460	IF ( .NOT. ALLOCATED( emt(ispec)%default_emission_data ) ) &
1461	ALLOCATE(emt(ispec)%default_emission_data(1:emt_att%ncat,1:ny+1,1:nx+1))
1462
1463	ALLOCATE(dum_var_3d(1:emt_att%ncat,nys+1:nyn+1,nxl+1:nxr+1))
1464
1465	CALL get_variable(id_emis,"emission_values",dum_var_3d,ispec,1,emt_att%ncat,nys,nyn,nxl,nxr)
1466
1467	emt(ispec)%default_emission_data(:,nys+1:nyn+1,nxl+1:nxr+1) = &
1468	dum_var_3d(1:emt_att%ncat,nys+1:nyn+1,nxl+1:nxr+1)
1469
1470	DEALLOCATE (dum_var_3d)
1471
1472	ENDDO
1473
1474	!-- UNITS
1475	CALL get_attribute(id_emis,"units",emt_att%units,.FALSE.,"emission_values")
1476
1477
1478	!-- PRE-PROCESSED MODE --
1479
1480	ELSE IF (TRIM(mode_emis)=="PRE-PROCESSED" .OR. TRIM(mode_emis)=="pre-processed") THEN
1481	!-- In the PRE-PROCESSED mode, only the VOC names, the VOC_composition, the emission values and their units remain to be read at this point
1482
1483	DO ispec=1,emt_att%nspec
1484
1485	!-- EMISSION_VOC_NAME (1-DIMENSIONAL)
1486	IF (TRIM(emt_att%species_name(ispec))=="VOC" .OR. TRIM(emt_att%species_name(ispec))=="voc") THEN
1487	!Allocate Array
1488	CALL netcdf_data_input_get_dimension_length( id_emis, emt_att%nvoc, 'nvoc' )
1489	ALLOCATE(emt_att%voc_name(1:emt_att%nvoc))
1490	!Read-in Variable
1491	CALL get_variable( id_emis,"emission_voc_name",string_values, emt_att%nvoc)
1492	emt_att%voc_name=string_values
1493	IF (ALLOCATED(string_values)) DEALLOCATE(string_values)
1494
1495	!-- COMPOSITION VOC (2-DIMENSIONAL)
1496	!Allocate Array
1497	ALLOCATE(emt_att%voc_comp(1:emt_att%ncat,1:emt_att%nvoc))
1498	!Read-in Variable
1499	CALL get_variable(id_emis,"composition_voc",emt_att%voc_comp,1,emt_att%ncat,1,emt_att%nvoc)
1500	ENDIF
1501
1502	ENDDO !> ispec
1503
1504	!-- EMISSION_VALUES (4-DIMENSIONAL)
1505	!Calculate temporal dimension length
1506	CALL netcdf_data_input_get_dimension_length( id_emis, emt_att%dt_emission, 'time' )
1507
1508
1509	DO ispec=1,emt_att%nspec
1510
1511	!Allocation for the entire domain has to be done only for the first processor between all the subdomains
1512	IF ( .NOT. ALLOCATED( emt(ispec)%preproc_emission_data ) ) &
1513	ALLOCATE(emt(ispec)%preproc_emission_data(emt_att%dt_emission,1,1:ny+1,1:nx+1))
1514
1515	!> allocate variable where to pass emission values read from netcdf
1516	ALLOCATE(dum_var_4d(1:emt_att%dt_emission,1,nys+1:nyn+1,nxl+1:nxr+1))
1517
1518	!Read-in Variable
1519	CALL get_variable(id_emis,"emission_values",dum_var_4d,ispec,1,emt_att%dt_emission,1,1,nys,nyn,nxl,nxr)
1520
1521
1522	emt(ispec)%preproc_emission_data(:,1,nys+1:nyn+1,nxl+1:nxr+1) = &
1523	dum_var_4d(1:emt_att%dt_emission,1,nys+1:nyn+1,nxl+1:nxr+1)
1524
1525	DEALLOCATE ( dum_var_4d )
1526
1527	ENDDO
1528
1529	!-- UNITS
1530	CALL get_attribute(id_emis,"units",emt_att%units,.FALSE.,"emission_values")
1531
1532	ENDIF
1533
1534	CALL close_input_file( id_emis )
1535
1536	#endif
1537	ENDIF
1538
1539	END SUBROUTINE netcdf_data_input_chemistry_data
1540
1541	!------------------------------------------------------------------------------!
1542	! Description:
1543	! ------------
1544	!> Reads surface classification data, such as vegetation and soil type, etc. .
1545	!------------------------------------------------------------------------------!
1546	SUBROUTINE netcdf_data_input_surface_data
1547
1548	USE control_parameters, &
1549	ONLY: bc_lr_cyc, bc_ns_cyc, land_surface, plant_canopy, &
1550	urban_surface
1551
1552	USE indices, &
1553	ONLY: nbgp, nx, nxl, nxr,ny, nyn, nys
1554
1555
1556	IMPLICIT NONE
1557
1558	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names !< variable names in static input file
1559
1560	INTEGER(iwp) :: id_surf !< NetCDF id of input file
1561	INTEGER(iwp) :: k !< running index along z-direction
1562	INTEGER(iwp) :: k2 !< running index
1563	INTEGER(iwp) :: num_vars !< number of variables in input file
1564	INTEGER(iwp) :: nz_soil !< number of soil layers in file
1565
1566	!
1567	!-- If not static input file is available, skip this routine
1568	IF ( .NOT. input_pids_static ) RETURN
1569	!
1570	!-- Measure CPU time
1571	CALL cpu_log( log_point_s(82), 'NetCDF input', 'start' )
1572	!
1573	!-- Read plant canopy variables.
1574	IF ( plant_canopy ) THEN
1575	#if defined ( __netcdf )
1576	!
1577	!-- Open file in read-only mode
1578	CALL open_read_file( TRIM( input_file_static ) // &
1579	TRIM( coupling_char ) , id_surf )
1580	!
1581	!-- At first, inquire all variable names.
1582	!-- This will be used to check whether an optional input variable
1583	!-- exist or not.
1584	CALL inquire_num_variables( id_surf, num_vars )
1585
1586	ALLOCATE( var_names(1:num_vars) )
1587	CALL inquire_variable_names( id_surf, var_names )
1588
1589	!
1590	!-- Read leaf area density - resolved vegetation
1591	IF ( check_existence( var_names, 'lad' ) ) THEN
1592	leaf_area_density_f%from_file = .TRUE.
1593	CALL get_attribute( id_surf, char_fill, &
1594	leaf_area_density_f%fill, &
1595	.FALSE., 'lad' )
1596	!
1597	!-- Inquire number of vertical vegetation layer
1598	CALL netcdf_data_input_get_dimension_length( id_surf, &
1599	leaf_area_density_f%nz, &
1600	'zlad' )
1601	!
1602	!-- Allocate variable for leaf-area density
1603	ALLOCATE( leaf_area_density_f%var( 0:leaf_area_density_f%nz-1, &
1604	nys:nyn,nxl:nxr) )
1605
1606	CALL get_variable( id_surf, 'lad', leaf_area_density_f%var, &
1607	nxl, nxr, nys, nyn, &
1608	0, leaf_area_density_f%nz-1 )
1609
1610	ELSE
1611	leaf_area_density_f%from_file = .FALSE.
1612	ENDIF
1613
1614	!
1615	!-- Read basal area density - resolved vegetation
1616	IF ( check_existence( var_names, 'bad' ) ) THEN
1617	basal_area_density_f%from_file = .TRUE.
1618	CALL get_attribute( id_surf, char_fill, &
1619	basal_area_density_f%fill, &
1620	.FALSE., 'bad' )
1621	!
1622	!-- Inquire number of vertical vegetation layer
1623	CALL netcdf_data_input_get_dimension_length( id_surf, &
1624	basal_area_density_f%nz, &
1625	'zlad' )
1626	!
1627	!-- Allocate variable
1628	ALLOCATE( basal_area_density_f%var(0:basal_area_density_f%nz-1, &
1629	nys:nyn,nxl:nxr) )
1630
1631	CALL get_variable( id_surf, 'bad', basal_area_density_f%var, &
1632	nxl, nxr, nys, nyn, &
1633	0, basal_area_density_f%nz-1 )
1634	ELSE
1635	basal_area_density_f%from_file = .FALSE.
1636	ENDIF
1637
1638	!
1639	!-- Read root area density - resolved vegetation
1640	IF ( check_existence( var_names, 'root_area_dens_r' ) ) THEN
1641	root_area_density_lad_f%from_file = .TRUE.
1642	CALL get_attribute( id_surf, char_fill, &
1643	root_area_density_lad_f%fill, &
1644	.FALSE., 'root_area_dens_r' )
1645	!
1646	!-- Inquire number of vertical soil layers
1647	CALL netcdf_data_input_get_dimension_length( id_surf, &
1648	root_area_density_lad_f%nz, &
1649	'zsoil' )
1650	!
1651	!-- Allocate variable
1652	ALLOCATE( root_area_density_lad_f%var &
1653	(0:root_area_density_lad_f%nz-1, &
1654	nys:nyn,nxl:nxr) )
1655
1656	CALL get_variable( id_surf, 'root_area_dens_r', &
1657	root_area_density_lad_f%var, &
1658	nxl, nxr, nys, nyn, &
1659	0, root_area_density_lad_f%nz-1 )
1660	ELSE
1661	root_area_density_lad_f%from_file = .FALSE.
1662	ENDIF
1663	!
1664	!-- Finally, close input file
1665	CALL close_input_file( id_surf )
1666	#endif
1667	ENDIF
1668	!
1669	!-- Deallocate variable list. Will be re-allocated in case further
1670	!-- variables are read from file.
1671	IF ( ALLOCATED( var_names ) ) DEALLOCATE( var_names )
1672	!
1673	!-- Skip the following if no land-surface or urban-surface module are
1674	!-- applied. This case, no one of the following variables is used anyway.
1675	IF ( .NOT. land_surface .AND. .NOT. urban_surface ) RETURN
1676
1677	#if defined ( __netcdf )
1678	!
1679	!-- Open file in read-only mode
1680	CALL open_read_file( TRIM( input_file_static ) // &
1681	TRIM( coupling_char ) , id_surf )
1682	!
1683	!-- Inquire all variable names.
1684	!-- This will be used to check whether an optional input variable exist
1685	!-- or not.
1686	CALL inquire_num_variables( id_surf, num_vars )
1687
1688	ALLOCATE( var_names(1:num_vars) )
1689	CALL inquire_variable_names( id_surf, var_names )
1690	!
1691	!-- Read vegetation type and required attributes
1692	IF ( check_existence( var_names, 'vegetation_type' ) ) THEN
1693	vegetation_type_f%from_file = .TRUE.
1694	CALL get_attribute( id_surf, char_fill, &
1695	vegetation_type_f%fill, &
1696	.FALSE., 'vegetation_type' )
1697
1698	ALLOCATE ( vegetation_type_f%var(nys:nyn,nxl:nxr) )
1699
1700	CALL get_variable( id_surf, 'vegetation_type', &
1701	vegetation_type_f%var, nxl, nxr, nys, nyn )
1702	ELSE
1703	vegetation_type_f%from_file = .FALSE.
1704	ENDIF
1705
1706	!
1707	!-- Read soil type and required attributes
1708	IF ( check_existence( var_names, 'soil_type' ) ) THEN
1709	soil_type_f%from_file = .TRUE.
1710	!
1711	!-- Note, lod is currently not on file; skip for the moment
1712	! CALL get_attribute( id_surf, char_lod, &
1713	! soil_type_f%lod, &
1714	! .FALSE., 'soil_type' )
1715	CALL get_attribute( id_surf, char_fill, &
1716	soil_type_f%fill, &
1717	.FALSE., 'soil_type' )
1718
1719	IF ( soil_type_f%lod == 1 ) THEN
1720
1721	ALLOCATE ( soil_type_f%var_2d(nys:nyn,nxl:nxr) )
1722
1723	CALL get_variable( id_surf, 'soil_type', soil_type_f%var_2d, &
1724	nxl, nxr, nys, nyn )
1725
1726	ELSEIF ( soil_type_f%lod == 2 ) THEN
1727	!
1728	!-- Obtain number of soil layers from file.
1729	CALL netcdf_data_input_get_dimension_length( id_surf, nz_soil, &
1730	'zsoil' )
1731
1732	ALLOCATE ( soil_type_f%var_3d(0:nz_soil,nys:nyn,nxl:nxr) )
1733
1734	CALL get_variable( id_surf, 'soil_type', soil_type_f%var_3d, &
1735	nxl, nxr, nys, nyn, 0, nz_soil )
1736
1737	ENDIF
1738	ELSE
1739	soil_type_f%from_file = .FALSE.
1740	ENDIF
1741
1742	!
1743	!-- Read pavement type and required attributes
1744	IF ( check_existence( var_names, 'pavement_type' ) ) THEN
1745	pavement_type_f%from_file = .TRUE.
1746	CALL get_attribute( id_surf, char_fill, &
1747	pavement_type_f%fill, .FALSE., &
1748	'pavement_type' )
1749
1750	ALLOCATE ( pavement_type_f%var(nys:nyn,nxl:nxr) )
1751
1752	CALL get_variable( id_surf, 'pavement_type', pavement_type_f%var, &
1753	nxl, nxr, nys, nyn )
1754	ELSE
1755	pavement_type_f%from_file = .FALSE.
1756	ENDIF
1757
1758	!
1759	!-- Read water type and required attributes
1760	IF ( check_existence( var_names, 'water_type' ) ) THEN
1761	water_type_f%from_file = .TRUE.
1762	CALL get_attribute( id_surf, char_fill, water_type_f%fill, &
1763	.FALSE., 'water_type' )
1764
1765	ALLOCATE ( water_type_f%var(nys:nyn,nxl:nxr) )
1766
1767	CALL get_variable( id_surf, 'water_type', water_type_f%var, &
1768	nxl, nxr, nys, nyn )
1769
1770	ELSE
1771	water_type_f%from_file = .FALSE.
1772	ENDIF
1773	!
1774	!-- Read relative surface fractions of vegetation, pavement and water.
1775	IF ( check_existence( var_names, 'surface_fraction' ) ) THEN
1776	surface_fraction_f%from_file = .TRUE.
1777	CALL get_attribute( id_surf, char_fill, &
1778	surface_fraction_f%fill, &
1779	.FALSE., 'surface_fraction' )
1780	!
1781	!-- Inquire number of surface fractions
1782	CALL netcdf_data_input_get_dimension_length( id_surf, &
1783	surface_fraction_f%nf, &
1784	'nsurface_fraction' )
1785	!
1786	!-- Allocate dimension array and input array for surface fractions
1787	ALLOCATE( surface_fraction_f%nfracs(0:surface_fraction_f%nf-1) )
1788	ALLOCATE( surface_fraction_f%frac(0:surface_fraction_f%nf-1, &
1789	nys:nyn,nxl:nxr) )
1790	!
1791	!-- Get dimension of surface fractions
1792	CALL get_variable( id_surf, 'nsurface_fraction', &
1793	surface_fraction_f%nfracs )
1794	!
1795	!-- Read surface fractions
1796	CALL get_variable( id_surf, 'surface_fraction', &
1797	surface_fraction_f%frac, nxl, nxr, nys, nyn, &
1798	0, surface_fraction_f%nf-1 )
1799	ELSE
1800	surface_fraction_f%from_file = .FALSE.
1801	ENDIF
1802	!
1803	!-- Read building parameters and related information
1804	IF ( check_existence( var_names, 'building_pars' ) ) THEN
1805	building_pars_f%from_file = .TRUE.
1806	CALL get_attribute( id_surf, char_fill, &
1807	building_pars_f%fill, &
1808	.FALSE., 'building_pars' )
1809	!
1810	!-- Inquire number of building parameters
1811	CALL netcdf_data_input_get_dimension_length( id_surf, &
1812	building_pars_f%np, &
1813	'nbuilding_pars' )
1814	!
1815	!-- Allocate dimension array and input array for building parameters
1816	ALLOCATE( building_pars_f%pars(0:building_pars_f%np-1) )
1817	ALLOCATE( building_pars_f%pars_xy(0:building_pars_f%np-1, &
1818	nys:nyn,nxl:nxr) )
1819	!
1820	!-- Get dimension of building parameters
1821	CALL get_variable( id_surf, 'nbuilding_pars', &
1822	building_pars_f%pars )
1823	!
1824	!-- Read building_pars
1825	CALL get_variable( id_surf, 'building_pars', &
1826	building_pars_f%pars_xy, nxl, nxr, nys, nyn, &
1827	0, building_pars_f%np-1 )
1828	ELSE
1829	building_pars_f%from_file = .FALSE.
1830	ENDIF
1831
1832	!
1833	!-- Read albedo type and required attributes
1834	IF ( check_existence( var_names, 'albedo_type' ) ) THEN
1835	albedo_type_f%from_file = .TRUE.
1836	CALL get_attribute( id_surf, char_fill, albedo_type_f%fill, &
1837	.FALSE., 'albedo_type' )
1838
1839	ALLOCATE ( albedo_type_f%var(nys:nyn,nxl:nxr) )
1840
1841	CALL get_variable( id_surf, 'albedo_type', albedo_type_f%var, &
1842	nxl, nxr, nys, nyn )
1843	ELSE
1844	albedo_type_f%from_file = .FALSE.
1845	ENDIF
1846	!
1847	!-- Read albedo parameters and related information
1848	IF ( check_existence( var_names, 'albedo_pars' ) ) THEN
1849	albedo_pars_f%from_file = .TRUE.
1850	CALL get_attribute( id_surf, char_fill, albedo_pars_f%fill, &
1851	.FALSE., 'albedo_pars' )
1852	!
1853	!-- Inquire number of albedo parameters
1854	CALL netcdf_data_input_get_dimension_length( id_surf, &
1855	albedo_pars_f%np, &
1856	'nalbedo_pars' )
1857	!
1858	!-- Allocate dimension array and input array for albedo parameters
1859	ALLOCATE( albedo_pars_f%pars(0:albedo_pars_f%np-1) )
1860	ALLOCATE( albedo_pars_f%pars_xy(0:albedo_pars_f%np-1, &
1861	nys:nyn,nxl:nxr) )
1862	!
1863	!-- Get dimension of albedo parameters
1864	CALL get_variable( id_surf, 'nalbedo_pars', albedo_pars_f%pars )
1865
1866	CALL get_variable( id_surf, 'albedo_pars', albedo_pars_f%pars_xy, &
1867	nxl, nxr, nys, nyn, &
1868	0, albedo_pars_f%np-1 )
1869	ELSE
1870	albedo_pars_f%from_file = .FALSE.
1871	ENDIF
1872
1873	!
1874	!-- Read pavement parameters and related information
1875	IF ( check_existence( var_names, 'pavement_pars' ) ) THEN
1876	pavement_pars_f%from_file = .TRUE.
1877	CALL get_attribute( id_surf, char_fill, &
1878	pavement_pars_f%fill, &
1879	.FALSE., 'pavement_pars' )
1880	!
1881	!-- Inquire number of pavement parameters
1882	CALL netcdf_data_input_get_dimension_length( id_surf, &
1883	pavement_pars_f%np, &
1884	'npavement_pars' )
1885	!
1886	!-- Allocate dimension array and input array for pavement parameters
1887	ALLOCATE( pavement_pars_f%pars(0:pavement_pars_f%np-1) )
1888	ALLOCATE( pavement_pars_f%pars_xy(0:pavement_pars_f%np-1, &
1889	nys:nyn,nxl:nxr) )
1890	!
1891	!-- Get dimension of pavement parameters
1892	CALL get_variable( id_surf, 'npavement_pars', pavement_pars_f%pars )
1893
1894	CALL get_variable( id_surf, 'pavement_pars', pavement_pars_f%pars_xy,&
1895	nxl, nxr, nys, nyn, &
1896	0, pavement_pars_f%np-1 )
1897	ELSE
1898	pavement_pars_f%from_file = .FALSE.
1899	ENDIF
1900
1901	!
1902	!-- Read pavement subsurface parameters and related information
1903	IF ( check_existence( var_names, 'pavement_subsurface_pars' ) ) &
1904	THEN
1905	pavement_subsurface_pars_f%from_file = .TRUE.
1906	CALL get_attribute( id_surf, char_fill, &
1907	pavement_subsurface_pars_f%fill, &
1908	.FALSE., 'pavement_subsurface_pars' )
1909	!
1910	!-- Inquire number of parameters
1911	CALL netcdf_data_input_get_dimension_length( id_surf, &
1912	pavement_subsurface_pars_f%np, &
1913	'npavement_subsurface_pars' )
1914	!
1915	!-- Inquire number of soil layers
1916	CALL netcdf_data_input_get_dimension_length( id_surf, &
1917	pavement_subsurface_pars_f%nz, &
1918	'zsoil' )
1919	!
1920	!-- Allocate dimension array and input array for pavement parameters
1921	ALLOCATE( pavement_subsurface_pars_f%pars &
1922	(0:pavement_subsurface_pars_f%np-1) )
1923	ALLOCATE( pavement_subsurface_pars_f%pars_xyz &
1924	(0:pavement_subsurface_pars_f%np-1, &
1925	0:pavement_subsurface_pars_f%nz-1, &
1926	nys:nyn,nxl:nxr) )
1927	!
1928	!-- Get dimension of pavement parameters
1929	CALL get_variable( id_surf, 'npavement_subsurface_pars', &
1930	pavement_subsurface_pars_f%pars )
1931
1932	CALL get_variable( id_surf, 'pavement_subsurface_pars', &
1933	pavement_subsurface_pars_f%pars_xyz, &
1934	nxl, nxr, nys, nyn, &
1935	0, pavement_subsurface_pars_f%nz-1, &
1936	0, pavement_subsurface_pars_f%np-1 )
1937	ELSE
1938	pavement_subsurface_pars_f%from_file = .FALSE.
1939	ENDIF
1940
1941
1942	!
1943	!-- Read vegetation parameters and related information
1944	IF ( check_existence( var_names, 'vegetation_pars' ) ) THEN
1945	vegetation_pars_f%from_file = .TRUE.
1946	CALL get_attribute( id_surf, char_fill, &
1947	vegetation_pars_f%fill, &
1948	.FALSE., 'vegetation_pars' )
1949	!
1950	!-- Inquire number of vegetation parameters
1951	CALL netcdf_data_input_get_dimension_length( id_surf, &
1952	vegetation_pars_f%np, &
1953	'nvegetation_pars' )
1954	!
1955	!-- Allocate dimension array and input array for surface fractions
1956	ALLOCATE( vegetation_pars_f%pars(0:vegetation_pars_f%np-1) )
1957	ALLOCATE( vegetation_pars_f%pars_xy(0:vegetation_pars_f%np-1, &
1958	nys:nyn,nxl:nxr) )
1959	!
1960	!-- Get dimension of the parameters
1961	CALL get_variable( id_surf, 'nvegetation_pars', &
1962	vegetation_pars_f%pars )
1963
1964	CALL get_variable( id_surf, 'vegetation_pars', &
1965	vegetation_pars_f%pars_xy, nxl, nxr, nys, nyn, &
1966	0, vegetation_pars_f%np-1 )
1967	ELSE
1968	vegetation_pars_f%from_file = .FALSE.
1969	ENDIF
1970
1971	!
1972	!-- Read root parameters/distribution and related information
1973	IF ( check_existence( var_names, 'soil_pars' ) ) THEN
1974	soil_pars_f%from_file = .TRUE.
1975	CALL get_attribute( id_surf, char_fill, &
1976	soil_pars_f%fill, &
1977	.FALSE., 'soil_pars' )
1978
1979	CALL get_attribute( id_surf, char_lod, &
1980	soil_pars_f%lod, &
1981	.FALSE., 'soil_pars' )
1982
1983	!
1984	!-- Inquire number of soil parameters
1985	CALL netcdf_data_input_get_dimension_length( id_surf, &
1986	soil_pars_f%np, &
1987	'nsoil_pars' )
1988	!
1989	!-- Read parameters array
1990	ALLOCATE( soil_pars_f%pars(0:soil_pars_f%np-1) )
1991	CALL get_variable( id_surf, 'nsoil_pars', soil_pars_f%pars )
1992
1993	!
1994	!-- In case of level of detail 2, also inquire number of vertical
1995	!-- soil layers, allocate memory and read the respective dimension
1996	IF ( soil_pars_f%lod == 2 ) THEN
1997	CALL netcdf_data_input_get_dimension_length( id_surf, &
1998	soil_pars_f%nz, &
1999	'zsoil' )
2000
2001	ALLOCATE( soil_pars_f%layers(0:soil_pars_f%nz-1) )
2002	CALL get_variable( id_surf, 'zsoil', soil_pars_f%layers )
2003
2004	ENDIF
2005
2006	!
2007	!-- Read soil parameters, depending on level of detail
2008	IF ( soil_pars_f%lod == 1 ) THEN
2009	ALLOCATE( soil_pars_f%pars_xy(0:soil_pars_f%np-1, &
2010	nys:nyn,nxl:nxr) )
2011
2012	CALL get_variable( id_surf, 'soil_pars', soil_pars_f%pars_xy, &
2013	nxl, nxr, nys, nyn, 0, soil_pars_f%np-1 )
2014
2015	ELSEIF ( soil_pars_f%lod == 2 ) THEN
2016	ALLOCATE( soil_pars_f%pars_xyz(0:soil_pars_f%np-1, &
2017	0:soil_pars_f%nz-1, &
2018	nys:nyn,nxl:nxr) )
2019	CALL get_variable( id_surf, 'soil_pars', &
2020	soil_pars_f%pars_xyz, &
2021	nxl, nxr, nys, nyn, 0, soil_pars_f%nz-1, &
2022	0, soil_pars_f%np-1 )
2023
2024	ENDIF
2025	ELSE
2026	soil_pars_f%from_file = .FALSE.
2027	ENDIF
2028
2029	!
2030	!-- Read water parameters and related information
2031	IF ( check_existence( var_names, 'water_pars' ) ) THEN
2032	water_pars_f%from_file = .TRUE.
2033	CALL get_attribute( id_surf, char_fill, &
2034	water_pars_f%fill, &
2035	.FALSE., 'water_pars' )
2036	!
2037	!-- Inquire number of water parameters
2038	CALL netcdf_data_input_get_dimension_length( id_surf, &
2039	water_pars_f%np, &
2040	'nwater_pars' )
2041	!
2042	!-- Allocate dimension array and input array for water parameters
2043	ALLOCATE( water_pars_f%pars(0:water_pars_f%np-1) )
2044	ALLOCATE( water_pars_f%pars_xy(0:water_pars_f%np-1, &
2045	nys:nyn,nxl:nxr) )
2046	!
2047	!-- Get dimension of water parameters
2048	CALL get_variable( id_surf, 'nwater_pars', water_pars_f%pars )
2049
2050	CALL get_variable( id_surf, 'water_pars', water_pars_f%pars_xy, &
2051	nxl, nxr, nys, nyn, 0, water_pars_f%np-1 )
2052	ELSE
2053	water_pars_f%from_file = .FALSE.
2054	ENDIF
2055	!
2056	!-- Read root area density - parametrized vegetation
2057	IF ( check_existence( var_names, 'root_area_dens_s' ) ) THEN
2058	root_area_density_lsm_f%from_file = .TRUE.
2059	CALL get_attribute( id_surf, char_fill, &
2060	root_area_density_lsm_f%fill, &
2061	.FALSE., 'root_area_dens_s' )
2062	!
2063	!-- Obtain number of soil layers from file and allocate variable
2064	CALL netcdf_data_input_get_dimension_length( id_surf, &
2065	root_area_density_lsm_f%nz, &
2066	'zsoil' )
2067	ALLOCATE( root_area_density_lsm_f%var &
2068	(0:root_area_density_lsm_f%nz-1, &
2069	nys:nyn,nxl:nxr) )
2070
2071	!
2072	!-- Read root-area density
2073	CALL get_variable( id_surf, 'root_area_dens_s', &
2074	root_area_density_lsm_f%var, &
2075	nxl, nxr, nys, nyn, &
2076	0, root_area_density_lsm_f%nz-1 )
2077
2078	ELSE
2079	root_area_density_lsm_f%from_file = .FALSE.
2080	ENDIF
2081	!
2082	!-- Read street type and street crossing
2083	IF ( check_existence( var_names, 'street_type' ) ) THEN
2084	street_type_f%from_file = .TRUE.
2085	CALL get_attribute( id_surf, char_fill, &
2086	street_type_f%fill, .FALSE., &
2087	'street_type' )
2088
2089	ALLOCATE ( street_type_f%var(nys:nyn,nxl:nxr) )
2090
2091	CALL get_variable( id_surf, 'street_type', street_type_f%var, &
2092	nxl, nxr, nys, nyn )
2093	ELSE
2094	street_type_f%from_file = .FALSE.
2095	ENDIF
2096
2097	IF ( check_existence( var_names, 'street_crossing' ) ) THEN
2098	street_crossing_f%from_file = .TRUE.
2099	CALL get_attribute( id_surf, char_fill, &
2100	street_crossing_f%fill, .FALSE., &
2101	'street_crossing' )
2102
2103	ALLOCATE ( street_crossing_f%var(nys:nyn,nxl:nxr) )
2104
2105	CALL get_variable( id_surf, 'street_crossing', &
2106	street_crossing_f%var, nxl, nxr, nys, nyn )
2107
2108	ELSE
2109	street_crossing_f%from_file = .FALSE.
2110	ENDIF
2111	!
2112	!-- Still missing: root_resolved and building_surface_pars.
2113	!-- Will be implemented as soon as they are available.
2114
2115	!
2116	!-- Finally, close input file
2117	CALL close_input_file( id_surf )
2118	#endif
2119	!
2120	!-- End of CPU measurement
2121	CALL cpu_log( log_point_s(82), 'NetCDF input', 'stop' )
2122	!
2123	!-- Exchange ghost points for surface variables. Therefore, resize
2124	!-- variables.
2125	IF ( albedo_type_f%from_file ) THEN
2126	CALL resize_array_2d_int8( albedo_type_f%var, nys, nyn, nxl, nxr )
2127	CALL exchange_horiz_2d_byte( albedo_type_f%var, nys, nyn, nxl, nxr, &
2128	nbgp )
2129	ENDIF
2130	IF ( pavement_type_f%from_file ) THEN
2131	CALL resize_array_2d_int8( pavement_type_f%var, nys, nyn, nxl, nxr )
2132	CALL exchange_horiz_2d_byte( pavement_type_f%var, nys, nyn, nxl, nxr,&
2133	nbgp )
2134	ENDIF
2135	IF ( soil_type_f%from_file .AND. ALLOCATED( soil_type_f%var_2d ) ) THEN
2136	CALL resize_array_2d_int8( soil_type_f%var_2d, nys, nyn, nxl, nxr )
2137	CALL exchange_horiz_2d_byte( soil_type_f%var_2d, nys, nyn, nxl, nxr, &
2138	nbgp )
2139	ENDIF
2140	IF ( vegetation_type_f%from_file ) THEN
2141	CALL resize_array_2d_int8( vegetation_type_f%var, nys, nyn, nxl, nxr )
2142	CALL exchange_horiz_2d_byte( vegetation_type_f%var, nys, nyn, nxl, &
2143	nxr, nbgp )
2144	ENDIF
2145	IF ( water_type_f%from_file ) THEN
2146	CALL resize_array_2d_int8( water_type_f%var, nys, nyn, nxl, nxr )
2147	CALL exchange_horiz_2d_byte( water_type_f%var, nys, nyn, nxl, nxr, &
2148	nbgp )
2149	ENDIF
2150	!
2151	!-- Exchange ghost points for 3/4-D variables. For the sake of simplicity,
2152	!-- loop further dimensions to use 2D exchange routines. Unfortunately this
2153	!-- is necessary, else new MPI-data types need to be introduced just for
2154	!-- 2 variables.
2155	IF ( soil_type_f%from_file .AND. ALLOCATED( soil_type_f%var_3d ) ) &
2156	THEN
2157	CALL resize_array_3d_int8( soil_type_f%var_3d, 0, nz_soil, &
2158	nys, nyn, nxl, nxr )
2159	DO k = 0, nz_soil
2160	CALL exchange_horiz_2d_int( &
2161	soil_type_f%var_3d(k,:,:), nys, nyn, nxl, nxr, nbgp )
2162	ENDDO
2163	ENDIF
2164
2165	IF ( surface_fraction_f%from_file ) THEN
2166	CALL resize_array_3d_real( surface_fraction_f%frac, &
2167	0, surface_fraction_f%nf-1, &
2168	nys, nyn, nxl, nxr )
2169	DO k = 0, surface_fraction_f%nf-1
2170	CALL exchange_horiz_2d( surface_fraction_f%frac(k,:,:), nbgp )
2171	ENDDO
2172	ENDIF
2173
2174	IF ( building_pars_f%from_file ) THEN
2175	CALL resize_array_3d_real( building_pars_f%pars_xy, &
2176	0, building_pars_f%np-1, &
2177	nys, nyn, nxl, nxr )
2178	DO k = 0, building_pars_f%np-1
2179	CALL exchange_horiz_2d( building_pars_f%pars_xy(k,:,:), nbgp )
2180	ENDDO
2181	ENDIF
2182
2183	IF ( albedo_pars_f%from_file ) THEN
2184	CALL resize_array_3d_real( albedo_pars_f%pars_xy, &
2185	0, albedo_pars_f%np-1, &
2186	nys, nyn, nxl, nxr )
2187	DO k = 0, albedo_pars_f%np-1
2188	CALL exchange_horiz_2d( albedo_pars_f%pars_xy(k,:,:), nbgp )
2189	ENDDO
2190	ENDIF
2191
2192	IF ( pavement_pars_f%from_file ) THEN
2193	CALL resize_array_3d_real( pavement_pars_f%pars_xy, &
2194	0, pavement_pars_f%np-1, &
2195	nys, nyn, nxl, nxr )
2196	DO k = 0, pavement_pars_f%np-1
2197	CALL exchange_horiz_2d( pavement_pars_f%pars_xy(k,:,:), nbgp )
2198	ENDDO
2199	ENDIF
2200
2201	IF ( vegetation_pars_f%from_file ) THEN
2202	CALL resize_array_3d_real( vegetation_pars_f%pars_xy, &
2203	0, vegetation_pars_f%np-1, &
2204	nys, nyn, nxl, nxr )
2205	DO k = 0, vegetation_pars_f%np-1
2206	CALL exchange_horiz_2d( vegetation_pars_f%pars_xy(k,:,:), nbgp )
2207	ENDDO
2208	ENDIF
2209
2210	IF ( water_pars_f%from_file ) THEN
2211	CALL resize_array_3d_real( water_pars_f%pars_xy, &
2212	0, water_pars_f%np-1, &
2213	nys, nyn, nxl, nxr )
2214	DO k = 0, water_pars_f%np-1
2215	CALL exchange_horiz_2d( water_pars_f%pars_xy(k,:,:), nbgp )
2216	ENDDO
2217	ENDIF
2218
2219	IF ( root_area_density_lsm_f%from_file ) THEN
2220	CALL resize_array_3d_real( root_area_density_lsm_f%var, &
2221	0, root_area_density_lsm_f%nz-1, &
2222	nys, nyn, nxl, nxr )
2223	DO k = 0, root_area_density_lsm_f%nz-1
2224	CALL exchange_horiz_2d( root_area_density_lsm_f%var(k,:,:), nbgp )
2225	ENDDO
2226	ENDIF
2227
2228	IF ( soil_pars_f%from_file ) THEN
2229	IF ( soil_pars_f%lod == 1 ) THEN
2230
2231	CALL resize_array_3d_real( soil_pars_f%pars_xy, &
2232	0, soil_pars_f%np-1, &
2233	nys, nyn, nxl, nxr )
2234	DO k = 0, soil_pars_f%np-1
2235	CALL exchange_horiz_2d( soil_pars_f%pars_xy(k,:,:), nbgp )
2236	ENDDO
2237
2238	ELSEIF ( soil_pars_f%lod == 2 ) THEN
2239	CALL resize_array_4d_real( soil_pars_f%pars_xyz, &
2240	0, soil_pars_f%np-1, &
2241	0, soil_pars_f%nz-1, &
2242	nys, nyn, nxl, nxr )
2243
2244	DO k2 = 0, soil_pars_f%nz-1
2245	DO k = 0, soil_pars_f%np-1
2246	CALL exchange_horiz_2d( soil_pars_f%pars_xyz(k,k2,:,:), &
2247	nbgp )
2248	ENDDO
2249	ENDDO
2250	ENDIF
2251	ENDIF
2252
2253	IF ( pavement_subsurface_pars_f%from_file ) THEN
2254	CALL resize_array_4d_real( pavement_subsurface_pars_f%pars_xyz, &
2255	0, pavement_subsurface_pars_f%np-1, &
2256	0, pavement_subsurface_pars_f%nz-1, &
2257	nys, nyn, nxl, nxr )
2258
2259	DO k2 = 0, pavement_subsurface_pars_f%nz-1
2260	DO k = 0, pavement_subsurface_pars_f%np-1
2261	CALL exchange_horiz_2d( &
2262	pavement_subsurface_pars_f%pars_xyz(k,k2,:,:), nbgp )
2263	ENDDO
2264	ENDDO
2265	ENDIF
2266
2267	END SUBROUTINE netcdf_data_input_surface_data
2268
2269	!------------------------------------------------------------------------------!
2270	! Description:
2271	! ------------
2272	!> Reads uvem lookup table information.
2273	!------------------------------------------------------------------------------!
2274	SUBROUTINE netcdf_data_input_uvem
2275
2276	USE indices, &
2277	ONLY: nxl, nxr, nyn, nys
2278
2279	IMPLICIT NONE
2280
2281	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names !< variable names in static input file
2282
2283
2284	INTEGER(iwp) :: id_uvem !< NetCDF id of uvem lookup table input file
2285	INTEGER(iwp) :: nli = 35 !< dimension length of lookup table in x
2286	INTEGER(iwp) :: nlj = 9 !< dimension length of lookup table in y
2287	INTEGER(iwp) :: nlk = 90 !< dimension length of lookup table in z
2288	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
2289	!
2290	!-- Input via uv exposure model lookup table input
2291	IF ( input_pids_uvem ) THEN
2292
2293	#if defined ( __netcdf )
2294	!
2295	!-- Open file in read-only mode
2296	CALL open_read_file( TRIM( input_file_uvem ) // &
2297	TRIM( coupling_char ), id_uvem )
2298	!
2299	!-- At first, inquire all variable names.
2300	!-- This will be used to check whether an input variable exist or not.
2301	CALL inquire_num_variables( id_uvem, num_vars )
2302	!
2303	!-- Allocate memory to store variable names and inquire them.
2304	ALLOCATE( var_names(1:num_vars) )
2305	CALL inquire_variable_names( id_uvem, var_names )
2306	!
2307	!-- uvem integration
2308	IF ( check_existence( var_names, 'int_factors' ) ) THEN
2309	uvem_integration_f%from_file = .TRUE.
2310	!
2311	!-- Input 2D uvem integration.
2312	ALLOCATE ( uvem_integration_f%var(0:nlj,0:nli) )
2313
2314	CALL get_variable( id_uvem, 'int_factors', uvem_integration_f%var, 0, nli, 0, nlj )
2315	ELSE
2316	uvem_integration_f%from_file = .FALSE.
2317	ENDIF
2318	!
2319	!-- uvem irradiance
2320	IF ( check_existence( var_names, 'irradiance' ) ) THEN
2321	uvem_irradiance_f%from_file = .TRUE.
2322	!
2323	!-- Input 2D uvem irradiance.
2324	ALLOCATE ( uvem_irradiance_f%var(0:nlk, 0:2) )
2325
2326	CALL get_variable( id_uvem, 'irradiance', uvem_irradiance_f%var, 0, 2, 0, nlk )
2327	ELSE
2328	uvem_irradiance_f%from_file = .FALSE.
2329	ENDIF
2330	!
2331	!-- uvem porjection areas
2332	IF ( check_existence( var_names, 'projarea' ) ) THEN
2333	uvem_projarea_f%from_file = .TRUE.
2334	!
2335	!-- Input 3D uvem projection area (human geometgry)
2336	ALLOCATE ( uvem_projarea_f%var(0:2,0:nlj,0:nli) )
2337
2338	CALL get_variable( id_uvem, 'projarea', uvem_projarea_f%var, 0, nli, 0, nlj, 0, 2 )
2339	ELSE
2340	uvem_projarea_f%from_file = .FALSE.
2341	ENDIF
2342	!
2343	!-- uvem radiance
2344	IF ( check_existence( var_names, 'radiance' ) ) THEN
2345	uvem_radiance_f%from_file = .TRUE.
2346	!
2347	!-- Input 3D uvem radiance
2348	ALLOCATE ( uvem_radiance_f%var(0:nlk,0:nlj,0:nli) )
2349
2350	CALL get_variable( id_uvem, 'radiance', uvem_radiance_f%var, 0, nli, 0, nlj, 0, nlk )
2351	ELSE
2352	uvem_radiance_f%from_file = .FALSE.
2353	ENDIF
2354	!
2355	!-- Read building obstruction
2356	IF ( check_existence( var_names, 'obstruction' ) ) THEN
2357	building_obstruction_full%from_file = .TRUE.
2358	!-- Input 3D uvem building obstruction
2359	ALLOCATE ( building_obstruction_full%var_3d(0:44,0:2,0:2) )
2360	CALL get_variable( id_uvem, 'obstruction', building_obstruction_full%var_3d,0, 2, 0, 2, 0, 44 )
2361	ELSE
2362	building_obstruction_full%from_file = .FALSE.
2363	ENDIF
2364	!
2365	IF ( check_existence( var_names, 'obstruction' ) ) THEN
2366	building_obstruction_f%from_file = .TRUE.
2367	!
2368	!-- Input 3D uvem building obstruction
2369	ALLOCATE ( building_obstruction_f%var_3d(0:44,nys:nyn,nxl:nxr) )
2370	!
2371	CALL get_variable( id_uvem, 'obstruction', building_obstruction_f%var_3d, &
2372	nxl, nxr, nys, nyn, 0, 44 )
2373	ELSE
2374	building_obstruction_f%from_file = .FALSE.
2375	ENDIF
2376	!
2377	!-- Close uvem lookup table input file
2378	CALL close_input_file( id_uvem )
2379	#else
2380	CONTINUE
2381	#endif
2382	ENDIF
2383	END SUBROUTINE netcdf_data_input_uvem
2384
2385	!------------------------------------------------------------------------------!
2386	! Description:
2387	! ------------
2388	!> Reads orography and building information.
2389	!------------------------------------------------------------------------------!
2390	SUBROUTINE netcdf_data_input_topo
2391
2392	USE control_parameters, &
2393	ONLY: bc_lr_cyc, bc_ns_cyc, message_string, topography
2394
2395	USE indices, &
2396	ONLY: nbgp, nx, nxl, nxr, ny, nyn, nys, nzb
2397
2398
2399	IMPLICIT NONE
2400
2401	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names !< variable names in static input file
2402
2403
2404	INTEGER(iwp) :: i !< running index along x-direction
2405	INTEGER(iwp) :: ii !< running index for IO blocks
2406	INTEGER(iwp) :: id_topo !< NetCDF id of topograhy input file
2407	INTEGER(iwp) :: j !< running index along y-direction
2408	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
2409	INTEGER(iwp) :: skip_n_rows !< counting variable to skip rows while reading topography file
2410
2411	REAL(wp) :: dum !< dummy variable to skip columns while reading topography file
2412	!
2413	!-- CPU measurement
2414	CALL cpu_log( log_point_s(83), 'NetCDF/ASCII input topo', 'start' )
2415
2416	!
2417	!-- Input via palm-input data standard
2418	IF ( input_pids_static ) THEN
2419	#if defined ( __netcdf )
2420	!
2421	!-- Open file in read-only mode
2422	CALL open_read_file( TRIM( input_file_static ) // &
2423	TRIM( coupling_char ), id_topo )
2424	!
2425	!-- At first, inquire all variable names.
2426	!-- This will be used to check whether an input variable exist
2427	!-- or not.
2428	CALL inquire_num_variables( id_topo, num_vars )
2429	!
2430	!-- Allocate memory to store variable names and inquire them.
2431	ALLOCATE( var_names(1:num_vars) )
2432	CALL inquire_variable_names( id_topo, var_names )
2433	!
2434	!-- Read x, y - dimensions. Only required for consistency checks.
2435	CALL netcdf_data_input_get_dimension_length( id_topo, dim_static%nx, 'x' )
2436	CALL netcdf_data_input_get_dimension_length( id_topo, dim_static%ny, 'y' )
2437	ALLOCATE( dim_static%x(0:dim_static%nx-1) )
2438	ALLOCATE( dim_static%y(0:dim_static%ny-1) )
2439	CALL get_variable( id_topo, 'x', dim_static%x )
2440	CALL get_variable( id_topo, 'y', dim_static%y )
2441	!
2442	!-- Terrain height. First, get variable-related _FillValue attribute
2443	IF ( check_existence( var_names, 'zt' ) ) THEN
2444	terrain_height_f%from_file = .TRUE.
2445	CALL get_attribute( id_topo, char_fill, terrain_height_f%fill, &
2446	.FALSE., 'zt' )
2447	!
2448	!-- Input 2D terrain height.
2449	ALLOCATE ( terrain_height_f%var(nys:nyn,nxl:nxr) )
2450
2451	CALL get_variable( id_topo, 'zt', terrain_height_f%var, &
2452	nxl, nxr, nys, nyn )
2453
2454	ELSE
2455	terrain_height_f%from_file = .FALSE.
2456	ENDIF
2457
2458	!
2459	!-- Read building height. First, read its _FillValue attribute,
2460	!-- as well as lod attribute
2461	buildings_f%from_file = .FALSE.
2462	IF ( check_existence( var_names, 'buildings_2d' ) ) THEN
2463	buildings_f%from_file = .TRUE.
2464	CALL get_attribute( id_topo, char_lod, buildings_f%lod, &
2465	.FALSE., 'buildings_2d' )
2466
2467	CALL get_attribute( id_topo, char_fill, buildings_f%fill1, &
2468	.FALSE., 'buildings_2d' )
2469
2470	!
2471	!-- Read 2D buildings
2472	IF ( buildings_f%lod == 1 ) THEN
2473	ALLOCATE ( buildings_f%var_2d(nys:nyn,nxl:nxr) )
2474
2475	CALL get_variable( id_topo, 'buildings_2d', &
2476	buildings_f%var_2d, &
2477	nxl, nxr, nys, nyn )
2478	ELSE
2479	message_string = 'NetCDF attribute lod ' // &
2480	'(level of detail) is not set ' // &
2481	'properly for buildings_2d.'
2482	CALL message( 'netcdf_data_input_mod', 'PA0540', &
2483	1, 2, 0, 6, 0 )
2484	ENDIF
2485	ENDIF
2486	!
2487	!-- If available, also read 3D building information. If both are
2488	!-- available, use 3D information.
2489	IF ( check_existence( var_names, 'buildings_3d' ) ) THEN
2490	buildings_f%from_file = .TRUE.
2491	CALL get_attribute( id_topo, char_lod, buildings_f%lod, &
2492	.FALSE., 'buildings_3d' )
2493
2494	CALL get_attribute( id_topo, char_fill, buildings_f%fill2, &
2495	.FALSE., 'buildings_3d' )
2496
2497	CALL netcdf_data_input_get_dimension_length( id_topo, &
2498	buildings_f%nz, 'z' )
2499	!
2500	!-- Read 3D buildings
2501	IF ( buildings_f%lod == 2 ) THEN
2502	ALLOCATE( buildings_f%z(nzb:buildings_f%nz-1) )
2503	CALL get_variable( id_topo, 'z', buildings_f%z )
2504
2505	ALLOCATE( buildings_f%var_3d(nzb:buildings_f%nz-1, &
2506	nys:nyn,nxl:nxr) )
2507	buildings_f%var_3d = 0
2508
2509	CALL get_variable( id_topo, 'buildings_3d', &
2510	buildings_f%var_3d, &
2511	nxl, nxr, nys, nyn, 0, buildings_f%nz-1 )
2512	ELSE
2513	message_string = 'NetCDF attribute lod ' // &
2514	'(level of detail) is not set ' // &
2515	'properly for buildings_3d.'
2516	CALL message( 'netcdf_data_input_mod', 'PA0541', &
2517	1, 2, 0, 6, 0 )
2518	ENDIF
2519	ENDIF
2520	!
2521	!-- Read building IDs and its FillValue attribute. Further required
2522	!-- for mapping buildings on top of orography.
2523	IF ( check_existence( var_names, 'building_id' ) ) THEN
2524	building_id_f%from_file = .TRUE.
2525	CALL get_attribute( id_topo, char_fill, &
2526	building_id_f%fill, .FALSE., &
2527	'building_id' )
2528
2529	ALLOCATE ( building_id_f%var(nys:nyn,nxl:nxr) )
2530
2531	CALL get_variable( id_topo, 'building_id', building_id_f%var, &
2532	nxl, nxr, nys, nyn )
2533	ELSE
2534	building_id_f%from_file = .FALSE.
2535	ENDIF
2536	!
2537	!-- Read building_type and required attributes.
2538	IF ( check_existence( var_names, 'building_type' ) ) THEN
2539	building_type_f%from_file = .TRUE.
2540	CALL get_attribute( id_topo, char_fill, &
2541	building_type_f%fill, .FALSE., &
2542	'building_type' )
2543
2544	ALLOCATE ( building_type_f%var(nys:nyn,nxl:nxr) )
2545
2546	CALL get_variable( id_topo, 'building_type', building_type_f%var, &
2547	nxl, nxr, nys, nyn )
2548
2549	ELSE
2550	building_type_f%from_file = .FALSE.
2551	ENDIF
2552	!
2553	!-- Close topography input file
2554	CALL close_input_file( id_topo )
2555	#else
2556	CONTINUE
2557	#endif
2558	!
2559	!-- ASCII input
2560	ELSEIF ( TRIM( topography ) == 'read_from_file' ) THEN
2561
2562	DO ii = 0, io_blocks-1
2563	IF ( ii == io_group ) THEN
2564
2565	OPEN( 90, FILE='TOPOGRAPHY_DATA'//TRIM( coupling_char ), &
2566	STATUS='OLD', FORM='FORMATTED', ERR=10 )
2567	!
2568	!-- Read topography PE-wise. Rows are read from nyn to nys, columns
2569	!-- are read from nxl to nxr. At first, ny-nyn rows need to be skipped.
2570	skip_n_rows = 0
2571	DO WHILE ( skip_n_rows < ny - nyn )
2572	READ( 90, * )
2573	skip_n_rows = skip_n_rows + 1
2574	ENDDO
2575	!
2576	!-- Read data from nyn to nys and nxl to nxr. Therefore, skip
2577	!-- column until nxl-1 is reached
2578	ALLOCATE ( buildings_f%var_2d(nys:nyn,nxl:nxr) )
2579	DO j = nyn, nys, -1
2580	READ( 90, *, ERR=11, END=11 ) &
2581	( dum, i = 0, nxl-1 ), &
2582	( buildings_f%var_2d(j,i), i = nxl, nxr )
2583	ENDDO
2584
2585	GOTO 12
2586
2587	10 message_string = 'file TOPOGRAPHY_DATA'// &
2588	TRIM( coupling_char )// ' does not exist'
2589	CALL message( 'netcdf_data_input_mod', 'PA0208', 1, 2, 0, 6, 0 )
2590
2591	11 message_string = 'errors in file TOPOGRAPHY_DATA'// &
2592	TRIM( coupling_char )
2593	CALL message( 'netcdf_data_input_mod', 'PA0209', 2, 2, 0, 6, 0 )
2594
2595	12 CLOSE( 90 )
2596	buildings_f%from_file = .TRUE.
2597
2598	ENDIF
2599	#if defined( __parallel )
2600	CALL MPI_BARRIER( comm2d, ierr )
2601	#endif
2602	ENDDO
2603
2604	ENDIF
2605	!
2606	!-- End of CPU measurement
2607	CALL cpu_log( log_point_s(83), 'NetCDF/ASCII input topo', 'stop' )
2608	!
2609	!-- Check for minimum requirement to setup building topography. If buildings
2610	!-- are provided, also an ID and a type are required.
2611	!-- Note, doing this check in check_parameters
2612	!-- will be too late (data will be used for grid inititialization before).
2613	IF ( input_pids_static ) THEN
2614	IF ( buildings_f%from_file .AND. &
2615	.NOT. building_id_f%from_file ) THEN
2616	message_string = 'If building heigths are prescribed in ' // &
2617	'static input file, also an ID is required.'
2618	CALL message( 'netcdf_data_input_mod', 'PA0542', 1, 2, 0, 6, 0 )
2619	ENDIF
2620	ENDIF
2621	!
2622	!-- In case no terrain height is provided by static input file, allocate
2623	!-- array nevertheless and set terrain height to 0, which simplifies
2624	!-- topography initialization.
2625	IF ( .NOT. terrain_height_f%from_file ) THEN
2626	ALLOCATE ( terrain_height_f%var(nys:nyn,nxl:nxr) )
2627	terrain_height_f%var = 0.0_wp
2628	ENDIF
2629	!
2630	!-- Finally, exchange 1 ghost point for building ID and type.
2631	!-- In case of non-cyclic boundary conditions set Neumann conditions at the
2632	!-- lateral boundaries.
2633	IF ( building_id_f%from_file ) THEN
2634	CALL resize_array_2d_int32( building_id_f%var, nys, nyn, nxl, nxr )
2635	CALL exchange_horiz_2d_int( building_id_f%var, nys, nyn, nxl, nxr, &
2636	nbgp )
2637	ENDIF
2638
2639	IF ( building_type_f%from_file ) THEN
2640	CALL resize_array_2d_int8( building_type_f%var, nys, nyn, nxl, nxr )
2641	CALL exchange_horiz_2d_byte( building_type_f%var, nys, nyn, nxl, nxr, &
2642	nbgp )
2643	ENDIF
2644
2645	END SUBROUTINE netcdf_data_input_topo
2646
2647	!------------------------------------------------------------------------------!
2648	! Description:
2649	! ------------
2650	!> Reads initialization data of u, v, w, pt, q, geostrophic wind components,
2651	!> as well as soil moisture and soil temperature, derived from larger-scale
2652	!> model (COSMO) by Inifor.
2653	!------------------------------------------------------------------------------!
2654	SUBROUTINE netcdf_data_input_init_3d
2655
2656	USE arrays_3d, &
2657	ONLY: q, pt, u, v, w, zu, zw
2658
2659	USE control_parameters, &
2660	ONLY: bc_lr_cyc, bc_ns_cyc, humidity, message_string, neutral
2661
2662	USE indices, &
2663	ONLY: nx, nxl, nxlu, nxr, ny, nyn, nys, nysv, nzb, nz, nzt
2664
2665	IMPLICIT NONE
2666
2667	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names
2668
2669	LOGICAL :: dynamic_3d = .TRUE. !< flag indicating that 3D data is read from dynamic file
2670
2671	INTEGER(iwp) :: id_dynamic !< NetCDF id of dynamic input file
2672	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
2673
2674	LOGICAL :: check_passed !< flag indicating if a check passed
2675
2676	!
2677	!-- Skip routine if no input file with dynamic input data is available.
2678	IF ( .NOT. input_pids_dynamic ) RETURN
2679	!
2680	!-- Please note, Inifor is designed to provide initial data for u and v for
2681	!-- the prognostic grid points in case of lateral Dirichlet conditions.
2682	!-- This means that Inifor provides data from nxlu:nxr (for u) and
2683	!-- from nysv:nyn (for v) at the left and south domain boundary, respectively.
2684	!-- However, as work-around for the moment, PALM will run with cyclic
2685	!-- conditions and will be initialized with data provided by Inifor
2686	!-- boundaries in case of Dirichlet.
2687	!-- Hence, simply set set nxlu/nysv to 1 (will be reset to its original value
2688	!-- at the end of this routine.
2689	IF ( bc_lr_cyc .AND. nxl == 0 ) nxlu = 1
2690	IF ( bc_ns_cyc .AND. nys == 0 ) nysv = 1
2691
2692	!
2693	!-- CPU measurement
2694	CALL cpu_log( log_point_s(85), 'NetCDF input init', 'start' )
2695
2696	#if defined ( __netcdf )
2697	!
2698	!-- Open file in read-only mode
2699	CALL open_read_file( TRIM( input_file_dynamic ) // &
2700	TRIM( coupling_char ), id_dynamic )
2701
2702	!
2703	!-- At first, inquire all variable names.
2704	CALL inquire_num_variables( id_dynamic, num_vars )
2705	!
2706	!-- Allocate memory to store variable names.
2707	ALLOCATE( var_names(1:num_vars) )
2708	CALL inquire_variable_names( id_dynamic, var_names )
2709	!
2710	!-- Read vertical dimension of scalar und w grid.
2711	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nzu, 'z' )
2712	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nzw, 'zw' )
2713	!
2714	!-- Read also the horizontal dimensions. These are used just used fo
2715	!-- checking the compatibility with the PALM grid before reading.
2716	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nx, 'x' )
2717	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nxu, 'xu' )
2718	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%ny, 'y' )
2719	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nyv, 'yv' )
2720
2721	!
2722	!-- Check for correct horizontal and vertical dimension. Please note,
2723	!-- checks are performed directly here and not called from
2724	!-- check_parameters as some varialbes are still not allocated there.
2725	!-- Moreover, please note, u- and v-grid has 1 grid point less on
2726	!-- Inifor grid.
2727	IF ( init_3d%nx-1 /= nx .OR. init_3d%nxu-1 /= nx - 1 .OR. &
2728	init_3d%ny-1 /= ny .OR. init_3d%nyv-1 /= ny - 1 ) THEN
2729	message_string = 'Number of inifor horizontal grid points '// &
2730	'does not match the number of numeric grid '// &
2731	'points.'
2732	CALL message( 'netcdf_data_input_mod', 'PA0543', 1, 2, 0, 6, 0 )
2733	ENDIF
2734
2735	IF ( init_3d%nzu /= nz ) THEN
2736	message_string = 'Number of inifor vertical grid points ' // &
2737	'does not match the number of numeric grid '// &
2738	'points.'
2739	CALL message( 'netcdf_data_input_mod', 'PA0543', 1, 2, 0, 6, 0 )
2740	ENDIF
2741	!
2742	!-- Read vertical dimensions. Later, these are required for eventual
2743	!-- inter- and extrapolations of the initialization data.
2744	IF ( check_existence( var_names, 'z' ) ) THEN
2745	ALLOCATE( init_3d%zu_atmos(1:init_3d%nzu) )
2746	CALL get_variable( id_dynamic, 'z', init_3d%zu_atmos )
2747	ENDIF
2748	IF ( check_existence( var_names, 'zw' ) ) THEN
2749	ALLOCATE( init_3d%zw_atmos(1:init_3d%nzw) )
2750	CALL get_variable( id_dynamic, 'zw', init_3d%zw_atmos )
2751	ENDIF
2752	!
2753	!-- Check for consistency between vertical coordinates in dynamic
2754	!-- driver and numeric grid.
2755	!-- Please note, depending on compiler options both may be
2756	!-- equal up to a certain threshold, and differences between
2757	!-- the numeric grid and vertical coordinate in the driver can built-
2758	!-- up to 10E-1-10E-0 m. For this reason, the check is performed not
2759	!-- for exactly matching values.
2760	IF ( ANY( ABS( zu(1:nzt) - init_3d%zu_atmos(1:init_3d%nzu) ) &
2761	> 10E-1 ) .OR. &
2762	ANY( ABS( zw(1:nzt-1) - init_3d%zw_atmos(1:init_3d%nzw) ) &
2763	> 10E-1 ) ) THEN
2764	message_string = 'Vertical grid in dynamic driver does not '// &
2765	'match the numeric grid.'
2766	CALL message( 'netcdf_data_input_mod', 'PA0543', 1, 2, 0, 6, 0 )
2767	ENDIF
2768	!
2769	!-- Read initial geostrophic wind components at
2770	!-- t = 0 (index 1 in file).
2771	IF ( check_existence( var_names, 'ls_forcing_ug' ) ) THEN
2772	ALLOCATE( init_3d%ug_init(nzb:nzt+1) )
2773	init_3d%ug_init = 0.0_wp
2774
2775	CALL get_variable_pr( id_dynamic, 'ls_forcing_ug', 1, &
2776	init_3d%ug_init(1:nzt) )
2777	!
2778	!-- Set top-boundary condition (Neumann)
2779	init_3d%ug_init(nzt+1) = init_3d%ug_init(nzt)
2780
2781	init_3d%from_file_ug = .TRUE.
2782	ELSE
2783	init_3d%from_file_ug = .FALSE.
2784	ENDIF
2785	IF ( check_existence( var_names, 'ls_forcing_vg' ) ) THEN
2786	ALLOCATE( init_3d%vg_init(nzb:nzt+1) )
2787	init_3d%vg_init = 0.0_wp
2788
2789	CALL get_variable_pr( id_dynamic, 'ls_forcing_vg', 1, &
2790	init_3d%vg_init(1:nzt) )
2791	!
2792	!-- Set top-boundary condition (Neumann)
2793	init_3d%vg_init(nzt+1) = init_3d%vg_init(nzt)
2794
2795	init_3d%from_file_vg = .TRUE.
2796	ELSE
2797	init_3d%from_file_vg = .FALSE.
2798	ENDIF
2799	!
2800	!-- Read inital 3D data of u, v, w, pt and q,
2801	!-- derived from COSMO model. Read PE-wise yz-slices.
2802	!-- Please note, the u-, v- and w-component are defined on different
2803	!-- grids with one element less in the x-, y-,
2804	!-- and z-direction, respectively. Hence, reading is subdivided
2805	!-- into separate loops.
2806	!-- Read u-component
2807	IF ( check_existence( var_names, 'init_atmosphere_u' ) ) THEN
2808	!
2809	!-- Read attributes for the fill value and level-of-detail
2810	CALL get_attribute( id_dynamic, char_fill, init_3d%fill_u, &
2811	.FALSE., 'init_atmosphere_u' )
2812	CALL get_attribute( id_dynamic, char_lod, init_3d%lod_u, &
2813	.FALSE., 'init_atmosphere_u' )
2814	!
2815	!-- level-of-detail 1 - read initialization profile
2816	IF ( init_3d%lod_u == 1 ) THEN
2817	ALLOCATE( init_3d%u_init(nzb:nzt+1) )
2818	init_3d%u_init = 0.0_wp
2819
2820	CALL get_variable( id_dynamic, 'init_atmosphere_u', &
2821	init_3d%u_init(nzb+1:nzt) )
2822	!
2823	!-- Set top-boundary condition (Neumann)
2824	init_3d%u_init(nzt+1) = init_3d%u_init(nzt)
2825	!
2826	!-- level-of-detail 2 - read 3D initialization data
2827	ELSEIF ( init_3d%lod_u == 2 ) THEN
2828	CALL get_variable( id_dynamic, 'init_atmosphere_u', &
2829	u(nzb+1:nzt,nys:nyn,nxlu:nxr), &
2830	nxlu, nys+1, nzb+1, &
2831	nxr-nxlu+1, nyn-nys+1, init_3d%nzu, &
2832	dynamic_3d )
2833	!
2834	!-- Set value at leftmost model grid point nxl = 0. This is because
2835	!-- Inifor provides data only from 1:nx-1 since it assumes non-cyclic
2836	!-- conditions.
2837	IF ( nxl == 0 ) &
2838	u(nzb+1:nzt,nys:nyn,nxl) = u(nzb+1:nzt,nys:nyn,nxlu)
2839	!
2840	!-- Set bottom and top-boundary
2841	u(nzb,:,:) = u(nzb+1,:,:)
2842	u(nzt+1,:,:) = u(nzt,:,:)
2843
2844	ENDIF
2845	init_3d%from_file_u = .TRUE.
2846	ELSE
2847	message_string = 'Missing initial data for u-component'
2848	CALL message( 'netcdf_data_input_mod', 'PA0544', 1, 2, 0, 6, 0 )
2849	ENDIF
2850	!
2851	!-- Read v-component
2852	IF ( check_existence( var_names, 'init_atmosphere_v' ) ) THEN
2853	!
2854	!-- Read attributes for the fill value and level-of-detail
2855	CALL get_attribute( id_dynamic, char_fill, init_3d%fill_v, &
2856	.FALSE., 'init_atmosphere_v' )
2857	CALL get_attribute( id_dynamic, char_lod, init_3d%lod_v, &
2858	.FALSE., 'init_atmosphere_v' )
2859	!
2860	!-- level-of-detail 1 - read initialization profile
2861	IF ( init_3d%lod_v == 1 ) THEN
2862	ALLOCATE( init_3d%v_init(nzb:nzt+1) )
2863	init_3d%v_init = 0.0_wp
2864
2865	CALL get_variable( id_dynamic, 'init_atmosphere_v', &
2866	init_3d%v_init(nzb+1:nzt) )
2867	!
2868	!-- Set top-boundary condition (Neumann)
2869	init_3d%v_init(nzt+1) = init_3d%v_init(nzt)
2870	!
2871	!-- level-of-detail 2 - read 3D initialization data
2872	ELSEIF ( init_3d%lod_v == 2 ) THEN
2873
2874	CALL get_variable( id_dynamic, 'init_atmosphere_v', &
2875	v(nzb+1:nzt,nysv:nyn,nxl:nxr), &
2876	nxl+1, nysv, nzb+1, &
2877	nxr-nxl+1, nyn-nysv+1, init_3d%nzu, &
2878	dynamic_3d )
2879	!
2880	!-- Set value at southmost model grid point nys = 0. This is because
2881	!-- Inifor provides data only from 1:ny-1 since it assumes non-cyclic
2882	!-- conditions.
2883	IF ( nys == 0 ) &
2884	v(nzb+1:nzt,nys,nxl:nxr) = v(nzb+1:nzt,nysv,nxl:nxr)
2885	!
2886	!-- Set bottom and top-boundary
2887	v(nzb,:,:) = v(nzb+1,:,:)
2888	v(nzt+1,:,:) = v(nzt,:,:)
2889
2890	ENDIF
2891	init_3d%from_file_v = .TRUE.
2892	ELSE
2893	message_string = 'Missing initial data for v-component'
2894	CALL message( 'netcdf_data_input_mod', 'PA0544', 1, 2, 0, 6, 0 )
2895	ENDIF
2896	!
2897	!-- Read w-component
2898	IF ( check_existence( var_names, 'init_atmosphere_w' ) ) THEN
2899	!
2900	!-- Read attributes for the fill value and level-of-detail
2901	CALL get_attribute( id_dynamic, char_fill, init_3d%fill_w, &
2902	.FALSE., 'init_atmosphere_w' )
2903	CALL get_attribute( id_dynamic, char_lod, init_3d%lod_w, &
2904	.FALSE., 'init_atmosphere_w' )
2905	!
2906	!-- level-of-detail 1 - read initialization profile
2907	IF ( init_3d%lod_w == 1 ) THEN
2908	ALLOCATE( init_3d%w_init(nzb:nzt+1) )
2909	init_3d%w_init = 0.0_wp
2910
2911	CALL get_variable( id_dynamic, 'init_atmosphere_w', &
2912	init_3d%w_init(nzb+1:nzt-1) )
2913	!
2914	!-- Set top-boundary condition (Neumann)
2915	init_3d%w_init(nzt:nzt+1) = init_3d%w_init(nzt-1)
2916	!
2917	!-- level-of-detail 2 - read 3D initialization data
2918	ELSEIF ( init_3d%lod_w == 2 ) THEN
2919
2920	CALL get_variable( id_dynamic, 'init_atmosphere_w', &
2921	w(nzb+1:nzt-1,nys:nyn,nxl:nxr), &
2922	nxl+1, nys+1, nzb+1, &
2923	nxr-nxl+1, nyn-nys+1, init_3d%nzw, &
2924	dynamic_3d )
2925	!
2926	!-- Set bottom and top-boundary
2927	w(nzb,:,:) = 0.0_wp
2928	w(nzt,:,:) = w(nzt-1,:,:)
2929	w(nzt+1,:,:) = w(nzt-1,:,:)
2930
2931	ENDIF
2932	init_3d%from_file_w = .TRUE.
2933	ELSE
2934	message_string = 'Missing initial data for w-component'
2935	CALL message( 'netcdf_data_input_mod', 'PA0544', 1, 2, 0, 6, 0 )
2936	ENDIF
2937	!
2938	!-- Read potential temperature
2939	IF ( .NOT. neutral ) THEN
2940	IF ( check_existence( var_names, 'init_atmosphere_pt' ) ) THEN
2941	!
2942	!-- Read attributes for the fill value and level-of-detail
2943	CALL get_attribute( id_dynamic, char_fill, init_3d%fill_pt, &
2944	.FALSE., 'init_atmosphere_pt' )
2945	CALL get_attribute( id_dynamic, char_lod, init_3d%lod_pt, &
2946	.FALSE., 'init_atmosphere_pt' )
2947	!
2948	!-- level-of-detail 1 - read initialization profile
2949	IF ( init_3d%lod_pt == 1 ) THEN
2950	ALLOCATE( init_3d%pt_init(nzb:nzt+1) )
2951
2952	CALL get_variable( id_dynamic, 'init_atmosphere_pt', &
2953	init_3d%pt_init(nzb+1:nzt) )
2954	!
2955	!-- Set Neumann top and surface boundary condition for initial
2956	!-- profil
2957	init_3d%pt_init(nzb) = init_3d%pt_init(nzb+1)
2958	init_3d%pt_init(nzt+1) = init_3d%pt_init(nzt)
2959	!
2960	!-- level-of-detail 2 - read 3D initialization data
2961	ELSEIF ( init_3d%lod_pt == 2 ) THEN
2962
2963	CALL get_variable( id_dynamic, 'init_atmosphere_pt', &
2964	pt(nzb+1:nzt,nys:nyn,nxl:nxr), &
2965	nxl+1, nys+1, nzb+1, &
2966	nxr-nxl+1, nyn-nys+1, init_3d%nzu, &
2967	dynamic_3d )
2968
2969	!
2970	!-- Set bottom and top-boundary
2971	pt(nzb,:,:) = pt(nzb+1,:,:)
2972	pt(nzt+1,:,:) = pt(nzt,:,:)
2973
2974	ENDIF
2975	init_3d%from_file_pt = .TRUE.
2976	ELSE
2977	message_string = 'Missing initial data for ' // &
2978	'potential temperature'
2979	CALL message( 'netcdf_data_input_mod', 'PA0544', 1, 2, 0, 6, 0 )
2980	ENDIF
2981	ENDIF
2982	!
2983	!-- Read mixing ratio
2984	IF ( humidity ) THEN
2985	IF ( check_existence( var_names, 'init_atmosphere_qv' ) ) THEN
2986	!
2987	!-- Read attributes for the fill value and level-of-detail
2988	CALL get_attribute( id_dynamic, char_fill, init_3d%fill_q, &
2989	.FALSE., 'init_atmosphere_qv' )
2990	CALL get_attribute( id_dynamic, char_lod, init_3d%lod_q, &
2991	.FALSE., 'init_atmosphere_qv' )
2992	!
2993	!-- level-of-detail 1 - read initialization profile
2994	IF ( init_3d%lod_q == 1 ) THEN
2995	ALLOCATE( init_3d%q_init(nzb:nzt+1) )
2996
2997	CALL get_variable( id_dynamic, 'init_atmosphere_qv', &
2998	init_3d%q_init(nzb+1:nzt) )
2999	!
3000	!-- Set bottom and top boundary condition (Neumann)
3001	init_3d%q_init(nzb) = init_3d%q_init(nzb+1)
3002	init_3d%q_init(nzt+1) = init_3d%q_init(nzt)
3003	!
3004	!-- level-of-detail 2 - read 3D initialization data
3005	ELSEIF ( init_3d%lod_q == 2 ) THEN
3006
3007	CALL get_variable( id_dynamic, 'init_atmosphere_qv', &
3008	q(nzb+1:nzt,nys:nyn,nxl:nxr), &
3009	nxl+1, nys+1, nzb+1, &
3010	nxr-nxl+1, nyn-nys+1, init_3d%nzu, &
3011	dynamic_3d )
3012
3013	!
3014	!-- Set bottom and top-boundary
3015	q(nzb,:,:) = q(nzb+1,:,:)
3016	q(nzt+1,:,:) = q(nzt,:,:)
3017
3018	ENDIF
3019	init_3d%from_file_q = .TRUE.
3020	ELSE
3021	message_string = 'Missing initial data for ' // &
3022	'mixing ratio'
3023	CALL message( 'netcdf_data_input_mod', 'PA0544', 1, 2, 0, 6, 0 )
3024	ENDIF
3025	ENDIF
3026	!
3027	!-- Close input file
3028	CALL close_input_file( id_dynamic )
3029	#endif
3030	!
3031	!-- End of CPU measurement
3032	CALL cpu_log( log_point_s(85), 'NetCDF input init', 'stop' )
3033	!
3034	!-- Finally, check if the input data has any fill values. Please note,
3035	!-- checks depend on the LOD of the input data.
3036	IF ( init_3d%from_file_u ) THEN
3037	check_passed = .TRUE.
3038	IF ( init_3d%lod_u == 1 ) THEN
3039	IF ( ANY( init_3d%u_init(nzb+1:nzt+1) == init_3d%fill_u ) ) &
3040	check_passed = .FALSE.
3041	ELSEIF ( init_3d%lod_u == 2 ) THEN
3042	IF ( ANY( u(nzb+1:nzt+1,nys:nyn,nxlu:nxr) == init_3d%fill_u ) ) &
3043	check_passed = .FALSE.
3044	ENDIF
3045	IF ( .NOT. check_passed ) THEN
3046	message_string = 'NetCDF input for init_atmosphere_u must ' // &
3047	'not contain any _FillValues'
3048	CALL message( 'netcdf_data_input_mod', 'PA0545', 2, 2, 0, 6, 0 )
3049	ENDIF
3050	ENDIF
3051
3052	IF ( init_3d%from_file_v ) THEN
3053	check_passed = .TRUE.
3054	IF ( init_3d%lod_v == 1 ) THEN
3055	IF ( ANY( init_3d%v_init(nzb+1:nzt+1) == init_3d%fill_v ) ) &
3056	check_passed = .FALSE.
3057	ELSEIF ( init_3d%lod_v == 2 ) THEN
3058	IF ( ANY( v(nzb+1:nzt+1,nysv:nyn,nxl:nxr) == init_3d%fill_v ) ) &
3059	check_passed = .FALSE.
3060	ENDIF
3061	IF ( .NOT. check_passed ) THEN
3062	message_string = 'NetCDF input for init_atmosphere_v must ' // &
3063	'not contain any _FillValues'
3064	CALL message( 'netcdf_data_input_mod', 'PA0545', 2, 2, 0, 6, 0 )
3065	ENDIF
3066	ENDIF
3067
3068	IF ( init_3d%from_file_w ) THEN
3069	check_passed = .TRUE.
3070	IF ( init_3d%lod_w == 1 ) THEN
3071	IF ( ANY( init_3d%w_init(nzb+1:nzt) == init_3d%fill_w ) ) &
3072	check_passed = .FALSE.
3073	ELSEIF ( init_3d%lod_w == 2 ) THEN
3074	IF ( ANY( w(nzb+1:nzt,nys:nyn,nxl:nxr) == init_3d%fill_w ) ) &
3075	check_passed = .FALSE.
3076	ENDIF
3077	IF ( .NOT. check_passed ) THEN
3078	message_string = 'NetCDF input for init_atmosphere_w must ' // &
3079	'not contain any _FillValues'
3080	CALL message( 'netcdf_data_input_mod', 'PA0545', 2, 2, 0, 6, 0 )
3081	ENDIF
3082	ENDIF
3083
3084	IF ( init_3d%from_file_pt ) THEN
3085	check_passed = .TRUE.
3086	IF ( init_3d%lod_pt == 1 ) THEN
3087	IF ( ANY( init_3d%pt_init(nzb+1:nzt+1) == init_3d%fill_pt ) ) &
3088	check_passed = .FALSE.
3089	ELSEIF ( init_3d%lod_pt == 2 ) THEN
3090	IF ( ANY( pt(nzb+1:nzt+1,nys:nyn,nxl:nxr) == init_3d%fill_pt ) ) &
3091	check_passed = .FALSE.
3092	ENDIF
3093	IF ( .NOT. check_passed ) THEN
3094	message_string = 'NetCDF input for init_atmosphere_pt must ' // &
3095	'not contain any _FillValues'
3096	CALL message( 'netcdf_data_input_mod', 'PA0545', 2, 2, 0, 6, 0 )
3097	ENDIF
3098	ENDIF
3099
3100	IF ( init_3d%from_file_q ) THEN
3101	check_passed = .TRUE.
3102	IF ( init_3d%lod_q == 1 ) THEN
3103	IF ( ANY( init_3d%q_init(nzb+1:nzt+1) == init_3d%fill_q ) ) &
3104	check_passed = .FALSE.
3105	ELSEIF ( init_3d%lod_q == 2 ) THEN
3106	IF ( ANY( q(nzb+1:nzt+1,nys:nyn,nxl:nxr) == init_3d%fill_q ) ) &
3107	check_passed = .FALSE.
3108	ENDIF
3109	IF ( .NOT. check_passed ) THEN
3110	message_string = 'NetCDF input for init_atmosphere_q must ' // &
3111	'not contain any _FillValues'
3112	CALL message( 'netcdf_data_input_mod', 'PA0545', 2, 2, 0, 6, 0 )
3113	ENDIF
3114	ENDIF
3115	!
3116	!-- Workaround for cyclic conditions. Please see above for further explanation.
3117	IF ( bc_lr_cyc .AND. nxl == 0 ) nxlu = nxl
3118	IF ( bc_ns_cyc .AND. nys == 0 ) nysv = nys
3119
3120	END SUBROUTINE netcdf_data_input_init_3d
3121
3122	!------------------------------------------------------------------------------!
3123	! Description:
3124	! ------------
3125	!> Reads initialization data of u, v, w, pt, q, geostrophic wind components,
3126	!> as well as soil moisture and soil temperature, derived from larger-scale
3127	!> model (COSMO) by Inifor.
3128	!------------------------------------------------------------------------------!
3129	SUBROUTINE netcdf_data_input_init_lsm
3130
3131	USE control_parameters, &
3132	ONLY: message_string
3133
3134	USE indices, &
3135	ONLY: nx, nxl, nxr, ny, nyn, nys
3136
3137	IMPLICIT NONE
3138
3139	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names !< string containing all variables on file
3140
3141	INTEGER(iwp) :: id_dynamic !< NetCDF id of dynamic input file
3142	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
3143
3144	!
3145	!-- Skip routine if no input file with dynamic input data is available.
3146	IF ( .NOT. input_pids_dynamic ) RETURN
3147	!
3148	!-- CPU measurement
3149	CALL cpu_log( log_point_s(85), 'NetCDF input init', 'start' )
3150
3151	#if defined ( __netcdf )
3152	!
3153	!-- Open file in read-only mode
3154	CALL open_read_file( TRIM( input_file_dynamic ) // &
3155	TRIM( coupling_char ), id_dynamic )
3156
3157	!
3158	!-- At first, inquire all variable names.
3159	CALL inquire_num_variables( id_dynamic, num_vars )
3160	!
3161	!-- Allocate memory to store variable names.
3162	ALLOCATE( var_names(1:num_vars) )
3163	CALL inquire_variable_names( id_dynamic, var_names )
3164	!
3165	!-- Read vertical dimension for soil depth.
3166	IF ( check_existence( var_names, 'zsoil' ) ) &
3167	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nzs,&
3168	'zsoil' )
3169	!
3170	!-- Read also the horizontal dimensions required for soil initialization.
3171	!-- Please note, in case of non-nested runs or in case of root domain,
3172	!-- these data is already available, but will be read again for the sake
3173	!-- of clearness.
3174	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nx, &
3175	'x' )
3176	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%ny, &
3177	'y' )
3178	!
3179	!-- Check for correct horizontal and vertical dimension. Please note,
3180	!-- in case of non-nested runs or in case of root domain, these checks
3181	!-- are already performed
3182	IF ( init_3d%nx-1 /= nx .OR. init_3d%ny-1 /= ny ) THEN
3183	message_string = 'Number of inifor horizontal grid points '// &
3184	'does not match the number of numeric grid points.'
3185	CALL message( 'netcdf_data_input_mod', 'PA0543', 1, 2, 0, 6, 0 )
3186	ENDIF
3187	!
3188	!-- Read vertical dimensions. Later, these are required for eventual
3189	!-- inter- and extrapolations of the initialization data.
3190	IF ( check_existence( var_names, 'zsoil' ) ) THEN
3191	ALLOCATE( init_3d%z_soil(1:init_3d%nzs) )
3192	CALL get_variable( id_dynamic, 'zsoil', init_3d%z_soil )
3193	ENDIF
3194	!
3195	!-- Read initial data for soil moisture
3196	IF ( check_existence( var_names, 'init_soil_m' ) ) THEN
3197	!
3198	!-- Read attributes for the fill value and level-of-detail
3199	CALL get_attribute( id_dynamic, char_fill, &
3200	init_3d%fill_msoil, &
3201	.FALSE., 'init_soil_m' )
3202	CALL get_attribute( id_dynamic, char_lod, &
3203	init_3d%lod_msoil, &
3204	.FALSE., 'init_soil_m' )
3205	!
3206	!-- level-of-detail 1 - read initialization profile
3207	IF ( init_3d%lod_msoil == 1 ) THEN
3208	ALLOCATE( init_3d%msoil_1d(0:init_3d%nzs-1) )
3209
3210	CALL get_variable( id_dynamic, 'init_soil_m', &
3211	init_3d%msoil_1d(0:init_3d%nzs-1) )
3212	!
3213	!-- level-of-detail 2 - read 3D initialization data
3214	ELSEIF ( init_3d%lod_msoil == 2 ) THEN
3215	ALLOCATE ( init_3d%msoil_3d(0:init_3d%nzs-1,nys:nyn,nxl:nxr) )
3216
3217	CALL get_variable( id_dynamic, 'init_soil_m', &
3218	init_3d%msoil_3d(0:init_3d%nzs-1,nys:nyn,nxl:nxr),&
3219	nxl, nxr, nys, nyn, 0, init_3d%nzs-1 )
3220
3221	ENDIF
3222	init_3d%from_file_msoil = .TRUE.
3223	ENDIF
3224	!
3225	!-- Read soil temperature
3226	IF ( check_existence( var_names, 'init_soil_t' ) ) THEN
3227	!
3228	!-- Read attributes for the fill value and level-of-detail
3229	CALL get_attribute( id_dynamic, char_fill, &
3230	init_3d%fill_tsoil, &
3231	.FALSE., 'init_soil_t' )
3232	CALL get_attribute( id_dynamic, char_lod, &
3233	init_3d%lod_tsoil, &
3234	.FALSE., 'init_soil_t' )
3235	!
3236	!-- level-of-detail 1 - read initialization profile
3237	IF ( init_3d%lod_tsoil == 1 ) THEN
3238	ALLOCATE( init_3d%tsoil_1d(0:init_3d%nzs-1) )
3239
3240	CALL get_variable( id_dynamic, 'init_soil_t', &
3241	init_3d%tsoil_1d(0:init_3d%nzs-1) )
3242
3243	!
3244	!-- level-of-detail 2 - read 3D initialization data
3245	ELSEIF ( init_3d%lod_tsoil == 2 ) THEN
3246	ALLOCATE ( init_3d%tsoil_3d(0:init_3d%nzs-1,nys:nyn,nxl:nxr) )
3247
3248	CALL get_variable( id_dynamic, 'init_soil_t', &
3249	init_3d%tsoil_3d(0:init_3d%nzs-1,nys:nyn,nxl:nxr),&
3250	nxl, nxr, nys, nyn, 0, init_3d%nzs-1 )
3251	ENDIF
3252	init_3d%from_file_tsoil = .TRUE.
3253	ENDIF
3254	!
3255	!-- Close input file
3256	CALL close_input_file( id_dynamic )
3257	#endif
3258	!
3259	!-- End of CPU measurement
3260	CALL cpu_log( log_point_s(85), 'NetCDF input init', 'stop' )
3261
3262	END SUBROUTINE netcdf_data_input_init_lsm
3263
3264	!------------------------------------------------------------------------------!
3265	! Description:
3266	! ------------
3267	!> Reads data at lateral and top boundaries derived from larger-scale model
3268	!> (COSMO) by Inifor.
3269	!------------------------------------------------------------------------------!
3270	SUBROUTINE netcdf_data_input_offline_nesting
3271
3272	USE control_parameters, &
3273	ONLY: bc_dirichlet_l, bc_dirichlet_n, bc_dirichlet_r, &
3274	bc_dirichlet_s, humidity, neutral, nesting_offline, &
3275	time_since_reference_point
3276
3277	USE indices, &
3278	ONLY: nxl, nxlu, nxr, nyn, nys, nysv, nzb, nzt
3279
3280	IMPLICIT NONE
3281
3282	INTEGER(iwp) :: id_dynamic !< NetCDF id of dynamic input file
3283	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
3284	INTEGER(iwp) :: t !< running index time dimension
3285	!
3286	!-- Skip input if no forcing from larger-scale models is applied.
3287	IF ( .NOT. nesting_offline ) RETURN
3288
3289	!
3290	!-- CPU measurement
3291	CALL cpu_log( log_point_s(86), 'NetCDF input forcing', 'start' )
3292
3293	#if defined ( __netcdf )
3294	!
3295	!-- Open file in read-only mode
3296	CALL open_read_file( TRIM( input_file_dynamic ) // &
3297	TRIM( coupling_char ), id_dynamic )
3298	!
3299	!-- Initialize INIFOR forcing.
3300	IF ( .NOT. nest_offl%init ) THEN
3301	!
3302	!-- At first, inquire all variable names.
3303	CALL inquire_num_variables( id_dynamic, num_vars )
3304	!
3305	!-- Allocate memory to store variable names.
3306	ALLOCATE( nest_offl%var_names(1:num_vars) )
3307	CALL inquire_variable_names( id_dynamic, nest_offl%var_names )
3308	!
3309	!-- Read time dimension, allocate memory and finally read time array
3310	CALL netcdf_data_input_get_dimension_length( id_dynamic, &
3311	nest_offl%nt, 'time' )
3312
3313	IF ( check_existence( nest_offl%var_names, 'time' ) ) THEN
3314	ALLOCATE( nest_offl%time(0:nest_offl%nt-1) )
3315	CALL get_variable( id_dynamic, 'time', nest_offl%time )
3316	ENDIF
3317	!
3318	!-- Read vertical dimension of scalar und w grid
3319	CALL netcdf_data_input_get_dimension_length( id_dynamic, &
3320	nest_offl%nzu, 'z' )
3321	CALL netcdf_data_input_get_dimension_length( id_dynamic, &
3322	nest_offl%nzw, 'zw' )
3323
3324	IF ( check_existence( nest_offl%var_names, 'z' ) ) THEN
3325	ALLOCATE( nest_offl%zu_atmos(1:nest_offl%nzu) )
3326	CALL get_variable( id_dynamic, 'z', nest_offl%zu_atmos )
3327	ENDIF
3328	IF ( check_existence( nest_offl%var_names, 'zw' ) ) THEN
3329	ALLOCATE( nest_offl%zw_atmos(1:nest_offl%nzw) )
3330	CALL get_variable( id_dynamic, 'zw', nest_offl%zw_atmos )
3331	ENDIF
3332
3333	!
3334	!-- Read surface pressure
3335	IF ( check_existence( nest_offl%var_names, &
3336	'surface_forcing_surface_pressure' ) ) THEN
3337	ALLOCATE( nest_offl%surface_pressure(0:nest_offl%nt-1) )
3338	CALL get_variable( id_dynamic, &
3339	'surface_forcing_surface_pressure', &
3340	nest_offl%surface_pressure )
3341	ENDIF
3342	!
3343	!-- Set control flag to indicate that initialization is already done
3344	nest_offl%init = .TRUE.
3345
3346	ENDIF
3347
3348	!
3349	!-- Obtain time index for current input starting at 0.
3350	!-- @todo: At the moment INIFOR and simulated time correspond
3351	!-- to each other. If required, adjust to daytime.
3352	nest_offl%tind = MINLOC( ABS( nest_offl%time - &
3353	time_since_reference_point ), DIM = 1 ) &
3354	- 1
3355	nest_offl%tind_p = nest_offl%tind + 1
3356	!
3357	!-- Read geostrophic wind components
3358	DO t = nest_offl%tind, nest_offl%tind_p
3359	CALL get_variable_pr( id_dynamic, 'ls_forcing_ug', t+1, &
3360	nest_offl%ug(t-nest_offl%tind,nzb+1:nzt) )
3361	CALL get_variable_pr( id_dynamic, 'ls_forcing_vg', t+1, &
3362	nest_offl%vg(t-nest_offl%tind,nzb+1:nzt) )
3363	ENDDO
3364	!
3365	!-- Read data at lateral and top boundaries. Please note, at left and
3366	!-- right domain boundary, yz-layers are read for u, v, w, pt and q.
3367	!-- For the v-component, the data starts at nysv, while for the other
3368	!-- quantities the data starts at nys. This is equivalent at the north
3369	!-- and south domain boundary for the u-component.
3370	!-- Further, lateral data is not accessed by parallel IO, indicated by the
3371	!-- last passed flag in the subroutine get_variable(). This is because
3372	!-- not every PE participates in this collective blocking read operation.
3373	IF ( bc_dirichlet_l ) THEN
3374	CALL get_variable( id_dynamic, 'ls_forcing_left_u', &
3375	nest_offl%u_left(0:1,nzb+1:nzt,nys:nyn), &
3376	nys+1, nzb+1, nest_offl%tind+1, &
3377	nyn-nys+1, nest_offl%nzu, 2, .FALSE. )
3378
3379	CALL get_variable( id_dynamic, 'ls_forcing_left_v', &
3380	nest_offl%v_left(0:1,nzb+1:nzt,nysv:nyn), &
3381	nysv, nzb+1, nest_offl%tind+1, &
3382	nyn-nysv+1, nest_offl%nzu, 2, .FALSE. )
3383
3384	CALL get_variable( id_dynamic, 'ls_forcing_left_w', &
3385	nest_offl%w_left(0:1,nzb+1:nzt-1,nys:nyn), &
3386	nys+1, nzb+1, nest_offl%tind+1, &
3387	nyn-nys+1, nest_offl%nzw, 2, .FALSE. )
3388
3389	IF ( .NOT. neutral ) THEN
3390	CALL get_variable( id_dynamic, 'ls_forcing_left_pt', &
3391	nest_offl%pt_left(0:1,nzb+1:nzt,nys:nyn), &
3392	nys+1, nzb+1, nest_offl%tind+1, &
3393	nyn-nys+1, nest_offl%nzu, 2, .FALSE. )
3394	ENDIF
3395
3396	IF ( humidity ) THEN
3397	CALL get_variable( id_dynamic, 'ls_forcing_left_qv', &
3398	nest_offl%q_left(0:1,nzb+1:nzt,nys:nyn), &
3399	nys+1, nzb+1, nest_offl%tind+1, &
3400	nyn-nys+1, nest_offl%nzu, 2, .FALSE. )
3401	ENDIF
3402
3403	ENDIF
3404
3405	IF ( bc_dirichlet_r ) THEN
3406	CALL get_variable( id_dynamic, 'ls_forcing_right_u', &
3407	nest_offl%u_right(0:1,nzb+1:nzt,nys:nyn), &
3408	nys+1, nzb+1, nest_offl%tind+1, &
3409	nyn-nys+1, nest_offl%nzu, 2, .FALSE. )
3410
3411	CALL get_variable( id_dynamic, 'ls_forcing_right_v', &
3412	nest_offl%v_right(0:1,nzb+1:nzt,nysv:nyn), &
3413	nysv, nzb+1, nest_offl%tind+1, &
3414	nyn-nysv+1, nest_offl%nzu, 2, .FALSE. )
3415
3416	CALL get_variable( id_dynamic, 'ls_forcing_right_w', &
3417	nest_offl%w_right(0:1,nzb+1:nzt-1,nys:nyn), &
3418	nys+1, nzb+1, nest_offl%tind+1, &
3419	nyn-nys+1, nest_offl%nzw, 2, .FALSE. )
3420
3421	IF ( .NOT. neutral ) THEN
3422	CALL get_variable( id_dynamic, 'ls_forcing_right_pt', &
3423	nest_offl%pt_right(0:1,nzb+1:nzt,nys:nyn), &
3424	nys+1, nzb+1, nest_offl%tind+1, &
3425	nyn-nys+1, nest_offl%nzu, 2, .FALSE. )
3426	ENDIF
3427	IF ( humidity ) THEN
3428	CALL get_variable( id_dynamic, 'ls_forcing_right_qv', &
3429	nest_offl%q_right(0:1,nzb+1:nzt,nys:nyn), &
3430	nys+1, nzb+1, nest_offl%tind+1, &
3431	nyn-nys+1, nest_offl%nzu, 2, .FALSE. )
3432	ENDIF
3433	ENDIF
3434
3435	IF ( bc_dirichlet_n ) THEN
3436
3437	CALL get_variable( id_dynamic, 'ls_forcing_north_u', &
3438	nest_offl%u_north(0:1,nzb+1:nzt,nxlu:nxr), &
3439	nxlu, nzb+1, nest_offl%tind+1, &
3440	nxr-nxlu+1, nest_offl%nzu, 2, .FALSE. )
3441
3442	CALL get_variable( id_dynamic, 'ls_forcing_north_v', &
3443	nest_offl%v_north(0:1,nzb+1:nzt,nxl:nxr), &
3444	nxl+1, nzb+1, nest_offl%tind+1, &
3445	nxr-nxl+1, nest_offl%nzu, 2, .FALSE. )
3446
3447	CALL get_variable( id_dynamic, 'ls_forcing_north_w', &
3448	nest_offl%w_north(0:1,nzb+1:nzt-1,nxl:nxr), &
3449	nxl+1, nzb+1, nest_offl%tind+1, &
3450	nxr-nxl+1, nest_offl%nzw, 2, .FALSE. )
3451
3452	IF ( .NOT. neutral ) THEN
3453	CALL get_variable( id_dynamic, 'ls_forcing_north_pt', &
3454	nest_offl%pt_north(0:1,nzb+1:nzt,nxl:nxr), &
3455	nxl+1, nzb+1, nest_offl%tind+1, &
3456	nxr-nxl+1, nest_offl%nzu, 2, .FALSE. )
3457	ENDIF
3458	IF ( humidity ) THEN
3459	CALL get_variable( id_dynamic, 'ls_forcing_north_qv', &
3460	nest_offl%q_north(0:1,nzb+1:nzt,nxl:nxr), &
3461	nxl+1, nzb+1, nest_offl%tind+1, &
3462	nxr-nxl+1, nest_offl%nzu, 2, .FALSE. )
3463	ENDIF
3464	ENDIF
3465
3466	IF ( bc_dirichlet_s ) THEN
3467	CALL get_variable( id_dynamic, 'ls_forcing_south_u', &
3468	nest_offl%u_south(0:1,nzb+1:nzt,nxlu:nxr), &
3469	nxlu, nzb+1, nest_offl%tind+1, &
3470	nxr-nxlu+1, nest_offl%nzu, 2, .FALSE. )
3471
3472	CALL get_variable( id_dynamic, 'ls_forcing_south_v', &
3473	nest_offl%v_south(0:1,nzb+1:nzt,nxl:nxr), &
3474	nxl+1, nzb+1, nest_offl%tind+1, &
3475	nxr-nxl+1, nest_offl%nzu, 2, .FALSE. )
3476
3477	CALL get_variable( id_dynamic, 'ls_forcing_south_w', &
3478	nest_offl%w_south(0:1,nzb+1:nzt-1,nxl:nxr), &
3479	nxl+1, nzb+1, nest_offl%tind+1, &
3480	nxr-nxl+1, nest_offl%nzw, 2, .FALSE. )
3481
3482	IF ( .NOT. neutral ) THEN
3483	CALL get_variable( id_dynamic, 'ls_forcing_south_pt', &
3484	nest_offl%pt_south(0:1,nzb+1:nzt,nxl:nxr), &
3485	nxl+1, nzb+1, nest_offl%tind+1, &
3486	nxr-nxl+1, nest_offl%nzu, 2, .FALSE. )
3487	ENDIF
3488	IF ( humidity ) THEN
3489	CALL get_variable( id_dynamic, 'ls_forcing_south_qv', &
3490	nest_offl%q_south(0:1,nzb+1:nzt,nxl:nxr), &
3491	nxl+1, nzb+1, nest_offl%tind+1, &
3492	nxr-nxl+1, nest_offl%nzu, 2, .FALSE. )
3493	ENDIF
3494	ENDIF
3495
3496	!
3497	!-- Top boundary
3498	CALL get_variable( id_dynamic, 'ls_forcing_top_u', &
3499	nest_offl%u_top(0:1,nys:nyn,nxlu:nxr), &
3500	nxlu, nys+1, nest_offl%tind+1, &
3501	nxr-nxlu+1, nyn-nys+1, 2, .TRUE. )
3502
3503	CALL get_variable( id_dynamic, 'ls_forcing_top_v', &
3504	nest_offl%v_top(0:1,nysv:nyn,nxl:nxr), &
3505	nxl+1, nysv, nest_offl%tind+1, &
3506	nxr-nxl+1, nyn-nysv+1, 2, .TRUE. )
3507
3508	CALL get_variable( id_dynamic, 'ls_forcing_top_w', &
3509	nest_offl%w_top(0:1,nys:nyn,nxl:nxr), &
3510	nxl+1, nys+1, nest_offl%tind+1, &
3511	nxr-nxl+1, nyn-nys+1, 2, .TRUE. )
3512
3513	IF ( .NOT. neutral ) THEN
3514	CALL get_variable( id_dynamic, 'ls_forcing_top_pt', &
3515	nest_offl%pt_top(0:1,nys:nyn,nxl:nxr), &
3516	nxl+1, nys+1, nest_offl%tind+1, &
3517	nxr-nxl+1, nyn-nys+1, 2, .TRUE. )
3518	ENDIF
3519	IF ( humidity ) THEN
3520	CALL get_variable( id_dynamic, 'ls_forcing_top_qv', &
3521	nest_offl%q_top(0:1,nys:nyn,nxl:nxr), &
3522	nxl+1, nys+1, nest_offl%tind+1, &
3523	nxr-nxl+1, nyn-nys+1, 2, .TRUE. )
3524	ENDIF
3525
3526	!
3527	!-- Close input file
3528	CALL close_input_file( id_dynamic )
3529	#endif
3530	!
3531	!-- End of CPU measurement
3532	CALL cpu_log( log_point_s(86), 'NetCDF input forcing', 'stop' )
3533
3534	END SUBROUTINE netcdf_data_input_offline_nesting
3535
3536
3537	!------------------------------------------------------------------------------!
3538	! Description:
3539	! ------------
3540	!> Checks input file for consistency and minimum requirements.
3541	!------------------------------------------------------------------------------!
3542	SUBROUTINE netcdf_data_input_check_dynamic
3543
3544	USE control_parameters, &
3545	ONLY: initializing_actions, message_string, nesting_offline
3546
3547	IMPLICIT NONE
3548
3549	!
3550	!-- In case of forcing, check whether dynamic input file is present
3551	IF ( .NOT. input_pids_dynamic .AND. nesting_offline ) THEN
3552	message_string = 'nesting_offline = .TRUE. requires dynamic ' // &
3553	'input file ' // &
3554	TRIM( input_file_dynamic ) // TRIM( coupling_char )
3555	CALL message( 'netcdf_data_input_mod', 'PA0546', 1, 2, 0, 6, 0 )
3556	ENDIF
3557	!
3558	!-- Dynamic input file must also be present if initialization via inifor is
3559	!-- prescribed.
3560	IF ( .NOT. input_pids_dynamic .AND. &
3561	TRIM( initializing_actions ) == 'inifor' ) THEN
3562	message_string = 'initializing_actions = inifor requires dynamic ' //&
3563	'input file ' // TRIM( input_file_dynamic ) // &
3564	TRIM( coupling_char )
3565	CALL message( 'netcdf_data_input_mod', 'PA0547', 1, 2, 0, 6, 0 )
3566	ENDIF
3567
3568	END SUBROUTINE netcdf_data_input_check_dynamic
3569
3570	!------------------------------------------------------------------------------!
3571	! Description:
3572	! ------------
3573	!> Checks input file for consistency and minimum requirements.
3574	!------------------------------------------------------------------------------!
3575	SUBROUTINE netcdf_data_input_check_static
3576
3577	USE arrays_3d, &
3578	ONLY: zu
3579
3580	USE control_parameters, &
3581	ONLY: land_surface, message_string, urban_surface
3582
3583	USE grid_variables, &
3584	ONLY: dx, dy
3585
3586	USE indices, &
3587	ONLY: nx, nxl, nxr, ny, nyn, nys
3588
3589	IMPLICIT NONE
3590
3591	INTEGER(iwp) :: i !< loop index along x-direction
3592	INTEGER(iwp) :: j !< loop index along y-direction
3593	INTEGER(iwp) :: n_surf !< number of different surface types at given location
3594
3595	LOGICAL :: check_passed !< flag indicating if a check passed
3596
3597	!
3598	!-- Return if no static input file is available
3599	IF ( .NOT. input_pids_static ) RETURN
3600	!
3601	!-- Check whether dimension size in input file matches the model dimensions
3602	IF ( dim_static%nx-1 /= nx .OR. dim_static%ny-1 /= ny ) THEN
3603	message_string = 'Static input file: horizontal dimension in ' // &
3604	'x- and/or y-direction ' // &
3605	'do not match the respective model dimension'
3606	CALL message( 'netcdf_data_input_mod', 'PA0548', 1, 2, 0, 6, 0 )
3607	ENDIF
3608	!
3609	!-- Check if grid spacing of provided input data matches the respective
3610	!-- grid spacing in the model.
3611	IF ( ABS( dim_static%x(1) - dim_static%x(0) - dx ) > 10E-6_wp .OR. &
3612	ABS( dim_static%y(1) - dim_static%y(0) - dy ) > 10E-6_wp ) THEN
3613	message_string = 'Static input file: horizontal grid spacing ' // &
3614	'in x- and/or y-direction ' // &
3615	'do not match the respective model grid spacing.'
3616	CALL message( 'netcdf_data_input_mod', 'PA0549', 1, 2, 0, 6, 0 )
3617	ENDIF
3618	!
3619	!-- Check for correct dimension of surface_fractions, should run from 0-2.
3620	IF ( surface_fraction_f%from_file ) THEN
3621	IF ( surface_fraction_f%nf-1 > 2 ) THEN
3622	message_string = 'nsurface_fraction must not be larger than 3.'
3623	CALL message( 'netcdf_data_input_mod', 'PA0580', 1, 2, 0, 6, 0 )
3624	ENDIF
3625	ENDIF
3626	!
3627	!-- Check orography for fill-values. For the moment, give an error message.
3628	!-- More advanced methods, e.g. a nearest neighbor algorithm as used in GIS
3629	!-- systems might be implemented later.
3630	!-- Please note, if no terrain height is provided, it is set to 0.
3631	IF ( ANY( terrain_height_f%var == terrain_height_f%fill ) ) THEN
3632	message_string = 'NetCDF variable zt is not ' // &
3633	'allowed to have missing data'
3634	CALL message( 'netcdf_data_input_mod', 'PA0550', 2, 2, myid, 6, 0 )
3635	ENDIF
3636	!
3637	!-- Check for negative terrain heights
3638	IF ( ANY( terrain_height_f%var < 0.0_wp ) ) THEN
3639	message_string = 'NetCDF variable zt is not ' // &
3640	'allowed to have negative values'
3641	CALL message( 'netcdf_data_input_mod', 'PA0551', 2, 2, myid, 6, 0 )
3642	ENDIF
3643	!
3644	!-- If 3D buildings are read, check if building information is consistent
3645	!-- to numeric grid.
3646	IF ( buildings_f%from_file ) THEN
3647	IF ( buildings_f%lod == 2 ) THEN
3648	IF ( buildings_f%nz > SIZE( zu ) ) THEN
3649	message_string = 'Reading 3D building data - too much ' // &
3650	'data points along the vertical coordinate.'
3651	CALL message( 'netcdf_data_input_mod', 'PA0552', 2, 2, 0, 6, 0 )
3652	ENDIF
3653
3654	IF ( ANY( ABS( buildings_f%z(0:buildings_f%nz-1) - &
3655	zu(0:buildings_f%nz-1) ) > 1E-6_wp ) ) THEN
3656	message_string = 'Reading 3D building data - vertical ' // &
3657	'coordinate do not match numeric grid.'
3658	CALL message( 'netcdf_data_input_mod', 'PA0553', 2, 2, myid, 6, 0 )
3659	ENDIF
3660	ENDIF
3661	ENDIF
3662
3663	!
3664	!-- Skip further checks concerning buildings and natural surface properties
3665	!-- if no urban surface and land surface model are applied.
3666	IF ( .NOT. land_surface .AND. .NOT. urban_surface ) RETURN
3667	!
3668	!-- Check for minimum requirement of surface-classification data in case
3669	!-- static input file is used.
3670	IF ( ( .NOT. vegetation_type_f%from_file .OR. &
3671	.NOT. pavement_type_f%from_file .OR. &
3672	.NOT. water_type_f%from_file .OR. &
3673	.NOT. soil_type_f%from_file ) .OR. &
3674	( urban_surface .AND. .NOT. building_type_f%from_file ) ) THEN
3675	message_string = 'Minimum requirement for surface classification ' //&
3676	'is not fulfilled. At least ' // &
3677	'vegetation_type, pavement_type, ' // &
3678	'soil_type and water_type are '// &
3679	'required. If urban-surface model is applied, ' // &
3680	'also building_type ist required'
3681	CALL message( 'netcdf_data_input_mod', 'PA0554', 1, 2, 0, 6, 0 )
3682	ENDIF
3683	!
3684	!-- Check for general availability of input variables.
3685	!-- If vegetation_type is 0 at any location, vegetation_pars as well as
3686	!-- root_area_dens_s are required.
3687	IF ( vegetation_type_f%from_file ) THEN
3688	IF ( ANY( vegetation_type_f%var == 0 ) ) THEN
3689	IF ( .NOT. vegetation_pars_f%from_file ) THEN
3690	message_string = 'If vegetation_type = 0 at any location, ' // &
3691	'vegetation_pars is required'
3692	CALL message( 'netcdf_data_input_mod', 'PA0555', 2, 2, -1, 6, 0 )
3693	ENDIF
3694	IF ( .NOT. root_area_density_lsm_f%from_file ) THEN
3695	message_string = 'If vegetation_type = 0 at any location, ' // &
3696	'root_area_dens_s is required'
3697	CALL message( 'netcdf_data_input_mod', 'PA0556', 2, 2, myid, 6, 0 )
3698	ENDIF
3699	ENDIF
3700	ENDIF
3701	!
3702	!-- If soil_type is zero at any location, soil_pars is required.
3703	IF ( soil_type_f%from_file ) THEN
3704	check_passed = .TRUE.
3705	IF ( ALLOCATED( soil_type_f%var_2d ) ) THEN
3706	IF ( ANY( soil_type_f%var_2d == 0 ) ) THEN
3707	IF ( .NOT. soil_pars_f%from_file ) check_passed = .FALSE.
3708	ENDIF
3709	ELSE
3710	IF ( ANY( soil_type_f%var_3d == 0 ) ) THEN
3711	IF ( .NOT. soil_pars_f%from_file ) check_passed = .FALSE.
3712	ENDIF
3713	ENDIF
3714	IF ( .NOT. check_passed ) THEN
3715	message_string = 'If soil_type = 0 at any location, ' // &
3716	'soil_pars is required'
3717	CALL message( 'netcdf_data_input_mod', 'PA0557', 2, 2, myid, 6, 0 )
3718	ENDIF
3719	ENDIF
3720	!
3721	!-- Buildings require a type in case of urban-surface model.
3722	IF ( buildings_f%from_file .AND. .NOT. building_type_f%from_file ) THEN
3723	message_string = 'If buildings are provided, also building_type ' // &
3724	'is required'
3725	CALL message( 'netcdf_data_input_mod', 'PA0581', 2, 2, myid, 6, 0 )
3726	ENDIF
3727	!
3728	!-- Buildings require an ID.
3729	IF ( buildings_f%from_file .AND. .NOT. building_id_f%from_file ) THEN
3730	message_string = 'If buildings are provided, also building_id ' // &
3731	'is required'
3732	CALL message( 'netcdf_data_input_mod', 'PA0582', 2, 2, myid, 6, 0 )
3733	ENDIF
3734	!
3735	!-- If building_type is zero at any location, building_pars is required.
3736	IF ( building_type_f%from_file ) THEN
3737	IF ( ANY( building_type_f%var == 0 ) ) THEN
3738	IF ( .NOT. building_pars_f%from_file ) THEN
3739	message_string = 'If building_type = 0 at any location, ' // &
3740	'building_pars is required'
3741	CALL message( 'netcdf_data_input_mod', 'PA0558', 2, 2, myid, 6, 0 )
3742	ENDIF
3743	ENDIF
3744	ENDIF
3745	!
3746	!-- If building_type is provided, also building_id is needed (due to the
3747	!-- filtering algorithm).
3748	IF ( building_type_f%from_file .AND. .NOT. building_id_f%from_file ) &
3749	THEN
3750	message_string = 'If building_type is provided, also building_id '// &
3751	'is required'
3752	CALL message( 'netcdf_data_input_mod', 'PA0519', 2, 2, myid, 6, 0 )
3753	ENDIF
3754	!
3755	!-- If albedo_type is zero at any location, albedo_pars is required.
3756	IF ( albedo_type_f%from_file ) THEN
3757	IF ( ANY( albedo_type_f%var == 0 ) ) THEN
3758	IF ( .NOT. albedo_pars_f%from_file ) THEN
3759	message_string = 'If albedo_type = 0 at any location, ' // &
3760	'albedo_pars is required'
3761	CALL message( 'netcdf_data_input_mod', 'PA0559', 2, 2, myid, 6, 0 )
3762	ENDIF
3763	ENDIF
3764	ENDIF
3765	!
3766	!-- If pavement_type is zero at any location, pavement_pars is required.
3767	IF ( pavement_type_f%from_file ) THEN
3768	IF ( ANY( pavement_type_f%var == 0 ) ) THEN
3769	IF ( .NOT. pavement_pars_f%from_file ) THEN
3770	message_string = 'If pavement_type = 0 at any location, ' // &
3771	'pavement_pars is required'
3772	CALL message( 'netcdf_data_input_mod', 'PA0560', 2, 2, myid, 6, 0 )
3773	ENDIF
3774	ENDIF
3775	ENDIF
3776	!
3777	!-- If pavement_type is zero at any location, also pavement_subsurface_pars
3778	!-- is required.
3779	IF ( pavement_type_f%from_file ) THEN
3780	IF ( ANY( pavement_type_f%var == 0 ) ) THEN
3781	IF ( .NOT. pavement_subsurface_pars_f%from_file ) THEN
3782	message_string = 'If pavement_type = 0 at any location, ' // &
3783	'pavement_subsurface_pars is required'
3784	CALL message( 'netcdf_data_input_mod', 'PA0561', 2, 2, myid, 6, 0 )
3785	ENDIF
3786	ENDIF
3787	ENDIF
3788	!
3789	!-- If water_type is zero at any location, water_pars is required.
3790	IF ( water_type_f%from_file ) THEN
3791	IF ( ANY( water_type_f%var == 0 ) ) THEN
3792	IF ( .NOT. water_pars_f%from_file ) THEN
3793	message_string = 'If water_type = 0 at any location, ' // &
3794	'water_pars is required'
3795	CALL message( 'netcdf_data_input_mod', 'PA0562', 2, 2,myid, 6, 0 )
3796	ENDIF
3797	ENDIF
3798	ENDIF
3799	!
3800	!-- Check for local consistency of the input data.
3801	DO i = nxl, nxr
3802	DO j = nys, nyn
3803	!
3804	!-- For each (y,x)-location at least one of the parameters
3805	!-- vegetation_type, pavement_type, building_type, or water_type
3806	!-- must be set to a nonÂmissing value.
3807	IF ( vegetation_type_f%var(j,i) == vegetation_type_f%fill .AND. &
3808	pavement_type_f%var(j,i) == pavement_type_f%fill .AND. &
3809	building_type_f%var(j,i) == building_type_f%fill .AND. &
3810	water_type_f%var(j,i) == water_type_f%fill ) THEN
3811	WRITE( message_string, * ) 'At least one of the parameters '// &
3812	'vegetation_type, pavement_type, ' // &
3813	'building_type, or water_type must be set '// &
3814	'to a non-missing value. Grid point: ', j, i
3815	CALL message( 'netcdf_data_input_mod', 'PA0563', 2, 2, myid, 6, 0 )
3816	ENDIF
3817	!
3818	!-- Note that a soil_type is required for each location (y,x) where
3819	!-- either vegetation_type or pavement_type is a nonÂmissing value.
3820	IF ( ( vegetation_type_f%var(j,i) /= vegetation_type_f%fill .OR. &
3821	pavement_type_f%var(j,i) /= pavement_type_f%fill ) ) THEN
3822	check_passed = .TRUE.
3823	IF ( ALLOCATED( soil_type_f%var_2d ) ) THEN
3824	IF ( soil_type_f%var_2d(j,i) == soil_type_f%fill ) &
3825	check_passed = .FALSE.
3826	ELSE
3827	IF ( ANY( soil_type_f%var_3d(:,j,i) == soil_type_f%fill) ) &
3828	check_passed = .FALSE.
3829	ENDIF
3830
3831	IF ( .NOT. check_passed ) THEN
3832	message_string = 'soil_type is required for each '// &
3833	'location (y,x) where vegetation_type or ' // &
3834	'pavement_type is a non-missing value.'
3835	CALL message( 'netcdf_data_input_mod', 'PA0564', &
3836	2, 2, myid, 6, 0 )
3837	ENDIF
3838	ENDIF
3839	!
3840	!-- Check for consistency of surface fraction. If more than one type
3841	!-- is set, surface fraction need to be given and the sum must not
3842	!-- be larger than 1.
3843	n_surf = 0
3844	IF ( vegetation_type_f%var(j,i) /= vegetation_type_f%fill ) &
3845	n_surf = n_surf + 1
3846	IF ( water_type_f%var(j,i) /= water_type_f%fill ) &
3847	n_surf = n_surf + 1
3848	IF ( pavement_type_f%var(j,i) /= pavement_type_f%fill ) &
3849	n_surf = n_surf + 1
3850
3851	IF ( n_surf > 1 ) THEN
3852	IF ( .NOT. surface_fraction_f%from_file ) THEN
3853	message_string = 'If more than one surface type is ' // &
3854	'given at a location, surface_fraction ' // &
3855	'must be provided.'
3856	CALL message( 'netcdf_data_input_mod', 'PA0565', &
3857	2, 2, myid, 6, 0 )
3858	ELSEIF ( ANY ( surface_fraction_f%frac(:,j,i) == &
3859	surface_fraction_f%fill ) ) THEN
3860	message_string = 'If more than one surface type is ' // &
3861	'given at a location, surface_fraction ' // &
3862	'must be provided.'
3863	CALL message( 'netcdf_data_input_mod', 'PA0565', &
3864	2, 2, myid, 6, 0 )
3865	ENDIF
3866	ENDIF
3867	!
3868	!-- Check for further mismatches. e.g. relative fractions exceed 1 or
3869	!-- vegetation_type is set but surface vegetation fraction is zero,
3870	!-- etc..
3871	IF ( surface_fraction_f%from_file ) THEN
3872	!
3873	!-- Sum of relative fractions must not exceed 1.
3874	IF ( SUM ( surface_fraction_f%frac(0:2,j,i) ) > 1.0_wp ) THEN
3875	message_string = 'surface_fraction must not exceed 1'
3876	CALL message( 'netcdf_data_input_mod', 'PA0566', &
3877	2, 2, myid, 6, 0 )
3878	ENDIF
3879	!
3880	!-- Relative fraction for a type must not be zero at locations where
3881	!-- this type is set.
3882	IF ( &
3883	( vegetation_type_f%var(j,i) /= vegetation_type_f%fill .AND.&
3884	( surface_fraction_f%frac(ind_veg_wall,j,i) == 0.0_wp .OR. &
3885	surface_fraction_f%frac(ind_veg_wall,j,i) == &
3886	surface_fraction_f%fill ) &
3887	) .OR. &
3888	( pavement_type_f%var(j,i) /= pavement_type_f%fill .AND. &
3889	( surface_fraction_f%frac(ind_pav_green,j,i) == 0.0_wp .OR. &
3890	surface_fraction_f%frac(ind_pav_green,j,i) == &
3891	surface_fraction_f%fill ) &
3892	) .OR. &
3893	( water_type_f%var(j,i) /= water_type_f%fill .AND. &
3894	( surface_fraction_f%frac(ind_wat_win,j,i) == 0.0_wp .OR. &
3895	surface_fraction_f%frac(ind_wat_win,j,i) == &
3896	surface_fraction_f%fill ) &
3897	) ) THEN
3898	WRITE( message_string, * ) 'Mismatch in setting of ' // &
3899	'surface_fraction. Vegetation-, pavement-, or '// &
3900	'water surface is given at (i,j) = ( ', i, j, &
3901	' ), but surface fraction is 0 for the given type.'
3902	CALL message( 'netcdf_data_input_mod', 'PA0567', &
3903	2, 2, myid, 6, 0 )
3904	ENDIF
3905	!
3906	!-- Relative fraction for a type must not contain non-zero values
3907	!-- if this type is not set.
3908	IF ( &
3909	( vegetation_type_f%var(j,i) == vegetation_type_f%fill .AND.&
3910	( surface_fraction_f%frac(ind_veg_wall,j,i) /= 0.0_wp .AND. &
3911	surface_fraction_f%frac(ind_veg_wall,j,i) /= &
3912	surface_fraction_f%fill ) &
3913	) .OR. &
3914	( pavement_type_f%var(j,i) == pavement_type_f%fill .AND. &
3915	( surface_fraction_f%frac(ind_pav_green,j,i) /= 0.0_wp .AND. &
3916	surface_fraction_f%frac(ind_pav_green,j,i) /= &
3917	surface_fraction_f%fill ) &
3918	) .OR. &
3919	( water_type_f%var(j,i) == water_type_f%fill .AND. &
3920	( surface_fraction_f%frac(ind_wat_win,j,i) /= 0.0_wp .AND. &
3921	surface_fraction_f%frac(ind_wat_win,j,i) /= &
3922	surface_fraction_f%fill ) &
3923	) ) THEN
3924	WRITE( message_string, * ) 'Mismatch in setting of ' // &
3925	'surface_fraction. Vegetation-, pavement-, or '// &
3926	'water surface is not given at (i,j) = ( ', i, j, &
3927	' ), but surface fraction is not 0 for the ' // &
3928	'given type.'
3929	CALL message( 'netcdf_data_input_mod', 'PA0568', &
3930	2, 2, myid, 6, 0 )
3931	ENDIF
3932	ENDIF
3933	!
3934	!-- Check vegetation_pars. If vegetation_type is 0, all parameters
3935	!-- need to be set, otherwise, single parameters set by
3936	!-- vegetation_type can be overwritten.
3937	IF ( vegetation_type_f%from_file ) THEN
3938	IF ( vegetation_type_f%var(j,i) == 0 ) THEN
3939	IF ( ANY( vegetation_pars_f%pars_xy(:,j,i) == &
3940	vegetation_pars_f%fill ) ) THEN
3941	message_string = 'If vegetation_type(y,x) = 0, all ' // &
3942	'parameters of vegetation_pars at '// &
3943	'this location must be set.'
3944	CALL message( 'netcdf_data_input_mod', 'PA0569', &
3945	2, 2, myid, 6, 0 )
3946	ENDIF
3947	ENDIF
3948	ENDIF
3949	!
3950	!-- Check root distribution. If vegetation_type is 0, all levels must
3951	!-- be set.
3952	IF ( vegetation_type_f%from_file ) THEN
3953	IF ( vegetation_type_f%var(j,i) == 0 ) THEN
3954	IF ( ANY( root_area_density_lsm_f%var(:,j,i) == &
3955	root_area_density_lsm_f%fill ) ) THEN
3956	message_string = 'If vegetation_type(y,x) = 0, all ' // &
3957	'levels of root_area_dens_s ' // &
3958	'must be set at this location.'
3959	CALL message( 'netcdf_data_input_mod', 'PA0570', &
3960	2, 2, myid, 6, 0 )
3961	ENDIF
3962	ENDIF
3963	ENDIF
3964	!
3965	!-- Check soil parameters. If soil_type is 0, all parameters
3966	!-- must be set.
3967	IF ( soil_type_f%from_file ) THEN
3968	check_passed = .TRUE.
3969	IF ( ALLOCATED( soil_type_f%var_2d ) ) THEN
3970	IF ( soil_type_f%var_2d(j,i) == 0 ) THEN
3971	IF ( ANY( soil_pars_f%pars_xy(:,j,i) == &
3972	soil_pars_f%fill ) ) check_passed = .FALSE.
3973	ENDIF
3974	ELSE
3975	IF ( ANY( soil_type_f%var_3d(:,j,i) == 0 ) ) THEN
3976	IF ( ANY( soil_pars_f%pars_xy(:,j,i) == &
3977	soil_pars_f%fill ) ) check_passed = .FALSE.
3978	ENDIF
3979	ENDIF
3980	IF ( .NOT. check_passed ) THEN
3981	message_string = 'If soil_type(y,x) = 0, all levels of ' //&
3982	'soil_pars at this location must be set.'
3983	CALL message( 'netcdf_data_input_mod', 'PA0571', &
3984	2, 2, myid, 6, 0 )
3985	ENDIF
3986	ENDIF
3987
3988	!
3989	!-- Check building parameters. If building_type is 0, all parameters
3990	!-- must be set.
3991	IF ( building_type_f%from_file ) THEN
3992	IF ( building_type_f%var(j,i) == 0 ) THEN
3993	IF ( ANY( building_pars_f%pars_xy(:,j,i) == &
3994	building_pars_f%fill ) ) THEN
3995	message_string = 'If building_type(y,x) = 0, all ' // &
3996	'parameters of building_pars at this '//&
3997	'location must be set.'
3998	CALL message( 'netcdf_data_input_mod', 'PA0572', &
3999	2, 2, myid, 6, 0 )
4000	ENDIF
4001	ENDIF
4002	ENDIF
4003	!
4004	!-- Check if building_type is set at each building and vice versa.
4005	IF ( building_type_f%from_file .AND. buildings_f%from_file ) THEN
4006	IF ( buildings_f%lod == 1 ) THEN
4007	IF ( buildings_f%var_2d(j,i) /= buildings_f%fill1 .AND. &
4008	building_type_f%var(j,i) == building_type_f%fill ) THEN
4009	WRITE( message_string, * ) 'Each location where a ' // &
4010	'building is set requires a type ' // &
4011	'( and vice versa ) in case the ' // &
4012	'urban-surface model is applied. ' // &
4013	'i, j = ', i, j
4014	CALL message( 'netcdf_data_input_mod', 'PA0573', &
4015	2, 2, myid, 6, 0 )
4016	ENDIF
4017	ENDIF
4018	IF ( buildings_f%lod == 2 ) THEN
4019	IF ( ANY( buildings_f%var_3d(:,j,i) == 1 ) .AND. &
4020	building_type_f%var(j,i) == building_type_f%fill ) THEN
4021	WRITE( message_string, * ) 'Each location where a ' // &
4022	'building is set requires a type ' // &
4023	'( and vice versa ) in case the ' // &
4024	'urban-surface model is applied. ' // &
4025	'i, j = ', i, j
4026	CALL message( 'netcdf_data_input_mod', 'PA0573', &
4027	2, 2, myid, 6, 0 )
4028	ENDIF
4029	ENDIF
4030	ENDIF
4031	!
4032	!-- Check if at each location where a building is present also an ID
4033	!-- is set and vice versa.
4034	IF ( buildings_f%from_file ) THEN
4035	IF ( buildings_f%lod == 1 ) THEN
4036	IF ( buildings_f%var_2d(j,i) /= buildings_f%fill1 .AND. &
4037	building_id_f%var(j,i) == building_id_f%fill ) THEN
4038	WRITE( message_string, * ) 'Each location where a ' // &
4039	'building is set requires an ID ' // &
4040	'( and vice versa ). i, j = ', i, j
4041	CALL message( 'netcdf_data_input_mod', 'PA0574', &
4042	2, 2, myid, 6, 0 )
4043	ENDIF
4044	ELSEIF ( buildings_f%lod == 2 ) THEN
4045	IF ( ANY( buildings_f%var_3d(:,j,i) == 1 ) .AND. &
4046	building_id_f%var(j,i) == building_id_f%fill ) THEN
4047	WRITE( message_string, * ) 'Each location where a ' // &
4048	'building is set requires an ID ' // &
4049	'( and vice versa ). i, j = ', i, j
4050	CALL message( 'netcdf_data_input_mod', 'PA0574', &
4051	2, 2, myid, 6, 0 )
4052	ENDIF
4053	ENDIF
4054	ENDIF
4055	!
4056	!-- Check if building ID is set where a bulding is defined.
4057	IF ( buildings_f%from_file ) THEN
4058	IF ( buildings_f%lod == 1 ) THEN
4059	IF ( buildings_f%var_2d(j,i) /= buildings_f%fill1 .AND. &
4060	building_id_f%var(j,i) == building_id_f%fill ) THEN
4061	WRITE( message_string, * ) 'Each building grid point '// &
4062	'requires an ID.', i, j
4063	CALL message( 'netcdf_data_input_mod', 'PA0575', &
4064	2, 2, myid, 6, 0 )
4065	ENDIF
4066	ELSEIF ( buildings_f%lod == 2 ) THEN
4067	IF ( ANY( buildings_f%var_3d(:,j,i) == 1 ) .AND. &
4068	building_id_f%var(j,i) == building_id_f%fill ) THEN
4069	WRITE( message_string, * ) 'Each building grid point '// &
4070	'requires an ID.', i, j
4071	CALL message( 'netcdf_data_input_mod', 'PA0575', &
4072	2, 2, myid, 6, 0 )
4073	ENDIF
4074	ENDIF
4075	ENDIF
4076	!
4077	!-- Check albedo parameters. If albedo_type is 0, all parameters
4078	!-- must be set.
4079	IF ( albedo_type_f%from_file ) THEN
4080	IF ( albedo_type_f%var(j,i) == 0 ) THEN
4081	IF ( ANY( albedo_pars_f%pars_xy(:,j,i) == &
4082	albedo_pars_f%fill ) ) THEN
4083	message_string = 'If albedo_type(y,x) = 0, all ' // &
4084	'parameters of albedo_pars at this ' // &
4085	'location must be set.'
4086	CALL message( 'netcdf_data_input_mod', 'PA0576', &
4087	2, 2, myid, 6, 0 )
4088	ENDIF
4089	ENDIF
4090	ENDIF
4091
4092	!
4093	!-- Check pavement parameters. If pavement_type is 0, all parameters
4094	!-- of pavement_pars must be set at this location.
4095	IF ( pavement_type_f%from_file ) THEN
4096	IF ( pavement_type_f%var(j,i) == 0 ) THEN
4097	IF ( ANY( pavement_pars_f%pars_xy(:,j,i) == &
4098	pavement_pars_f%fill ) ) THEN
4099	message_string = 'If pavement_type(y,x) = 0, all ' // &
4100	'parameters of pavement_pars at this '//&
4101	'location must be set.'
4102	CALL message( 'netcdf_data_input_mod', 'PA0577', &
4103	2, 2, myid, 6, 0 )
4104	ENDIF
4105	ENDIF
4106	ENDIF
4107	!
4108	!-- Check pavement-subsurface parameters. If pavement_type is 0,
4109	!-- all parameters of pavement_subsurface_pars must be set at this
4110	!-- location.
4111	IF ( pavement_type_f%from_file ) THEN
4112	IF ( pavement_type_f%var(j,i) == 0 ) THEN
4113	IF ( ANY( pavement_subsurface_pars_f%pars_xyz(:,:,j,i) == &
4114	pavement_subsurface_pars_f%fill ) ) THEN
4115	message_string = 'If pavement_type(y,x) = 0, all ' // &
4116	'parameters of ' // &
4117	'pavement_subsurface_pars at this '// &
4118	'location must be set.'
4119	CALL message( 'netcdf_data_input_mod', 'PA0578', &
4120	2, 2, myid, 6, 0 )
4121	ENDIF
4122	ENDIF
4123	ENDIF
4124
4125	!
4126	!-- Check water parameters. If water_type is 0, all parameters
4127	!-- must be set at this location.
4128	IF ( water_type_f%from_file ) THEN
4129	IF ( water_type_f%var(j,i) == 0 ) THEN
4130	IF ( ANY( water_pars_f%pars_xy(:,j,i) == &
4131	water_pars_f%fill ) ) THEN
4132	message_string = 'If water_type(y,x) = 0, all ' // &
4133	'parameters of water_pars at this ' // &
4134	'location must be set.'
4135	CALL message( 'netcdf_data_input_mod', 'PA0579', &
4136	2, 2, myid, 6, 0 )
4137	ENDIF
4138	ENDIF
4139	ENDIF
4140
4141	ENDDO
4142	ENDDO
4143
4144	END SUBROUTINE netcdf_data_input_check_static
4145
4146	!------------------------------------------------------------------------------!
4147	! Description:
4148	! ------------
4149	!> Resize 8-bit 2D Integer array: (nys:nyn,nxl:nxr) -> (nysg:nyng,nxlg:nxrg)
4150	!------------------------------------------------------------------------------!
4151	SUBROUTINE resize_array_2d_int8( var, js, je, is, ie )
4152
4153	IMPLICIT NONE
4154
4155	INTEGER(iwp) :: je !< upper index bound along y direction
4156	INTEGER(iwp) :: js !< lower index bound along y direction
4157	INTEGER(iwp) :: ie !< upper index bound along x direction
4158	INTEGER(iwp) :: is !< lower index bound along x direction
4159
4160	INTEGER(KIND=1), DIMENSION(:,:), ALLOCATABLE :: var !< treated variable
4161	INTEGER(KIND=1), DIMENSION(:,:), ALLOCATABLE :: var_tmp !< temporary copy
4162	!
4163	!-- Allocate temporary variable
4164	ALLOCATE( var_tmp(js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4165	!
4166	!-- Temporary copy of the variable
4167	var_tmp(js:je,is:ie) = var(js:je,is:ie)
4168	!
4169	!-- Resize the array
4170	DEALLOCATE( var )
4171	ALLOCATE( var(js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4172	!
4173	!-- Transfer temporary copy back to original array
4174	var(js:je,is:ie) = var_tmp(js:je,is:ie)
4175
4176	END SUBROUTINE resize_array_2d_int8
4177
4178	!------------------------------------------------------------------------------!
4179	! Description:
4180	! ------------
4181	!> Resize 32-bit 2D Integer array: (nys:nyn,nxl:nxr) -> (nysg:nyng,nxlg:nxrg)
4182	!------------------------------------------------------------------------------!
4183	SUBROUTINE resize_array_2d_int32( var, js, je, is, ie )
4184
4185	IMPLICIT NONE
4186
4187	INTEGER(iwp) :: je !< upper index bound along y direction
4188	INTEGER(iwp) :: js !< lower index bound along y direction
4189	INTEGER(iwp) :: ie !< upper index bound along x direction
4190	INTEGER(iwp) :: is !< lower index bound along x direction
4191
4192	INTEGER(iwp), DIMENSION(:,:), ALLOCATABLE :: var !< treated variable
4193	INTEGER(iwp), DIMENSION(:,:), ALLOCATABLE :: var_tmp !< temporary copy
4194	!
4195	!-- Allocate temporary variable
4196	ALLOCATE( var_tmp(js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4197	!
4198	!-- Temporary copy of the variable
4199	var_tmp(js:je,is:ie) = var(js:je,is:ie)
4200	!
4201	!-- Resize the array
4202	DEALLOCATE( var )
4203	ALLOCATE( var(js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4204	!
4205	!-- Transfer temporary copy back to original array
4206	var(js:je,is:ie) = var_tmp(js:je,is:ie)
4207
4208	END SUBROUTINE resize_array_2d_int32
4209
4210	!------------------------------------------------------------------------------!
4211	! Description:
4212	! ------------
4213	!> Resize 8-bit 3D Integer array: (:,nys:nyn,nxl:nxr) -> (:,nysg:nyng,nxlg:nxrg)
4214	!------------------------------------------------------------------------------!
4215	SUBROUTINE resize_array_3d_int8( var, ks, ke, js, je, is, ie )
4216
4217	IMPLICIT NONE
4218
4219	INTEGER(iwp) :: je !< upper index bound along y direction
4220	INTEGER(iwp) :: js !< lower index bound along y direction
4221	INTEGER(iwp) :: ie !< upper index bound along x direction
4222	INTEGER(iwp) :: is !< lower index bound along x direction
4223	INTEGER(iwp) :: ke !< upper bound of treated array in z-direction
4224	INTEGER(iwp) :: ks !< lower bound of treated array in z-direction
4225
4226	INTEGER(KIND=1), DIMENSION(:,:,:), ALLOCATABLE :: var !< treated variable
4227	INTEGER(KIND=1), DIMENSION(:,:,:), ALLOCATABLE :: var_tmp !< temporary copy
4228	!
4229	!-- Allocate temporary variable
4230	ALLOCATE( var_tmp(ks:ke,js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4231	!
4232	!-- Temporary copy of the variable
4233	var_tmp(ks:ke,js:je,is:ie) = var(ks:ke,js:je,is:ie)
4234	!
4235	!-- Resize the array
4236	DEALLOCATE( var )
4237	ALLOCATE( var(ks:ke,js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4238	!
4239	!-- Transfer temporary copy back to original array
4240	var(ks:ke,js:je,is:ie) = var_tmp(ks:ke,js:je,is:ie)
4241
4242	END SUBROUTINE resize_array_3d_int8
4243
4244	!------------------------------------------------------------------------------!
4245	! Description:
4246	! ------------
4247	!> Resize 3D Real array: (:,nys:nyn,nxl:nxr) -> (:,nysg:nyng,nxlg:nxrg)
4248	!------------------------------------------------------------------------------!
4249	SUBROUTINE resize_array_3d_real( var, ks, ke, js, je, is, ie )
4250
4251	IMPLICIT NONE
4252
4253	INTEGER(iwp) :: je !< upper index bound along y direction
4254	INTEGER(iwp) :: js !< lower index bound along y direction
4255	INTEGER(iwp) :: ie !< upper index bound along x direction
4256	INTEGER(iwp) :: is !< lower index bound along x direction
4257	INTEGER(iwp) :: ke !< upper bound of treated array in z-direction
4258	INTEGER(iwp) :: ks !< lower bound of treated array in z-direction
4259
4260	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: var !< treated variable
4261	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: var_tmp !< temporary copy
4262	!
4263	!-- Allocate temporary variable
4264	ALLOCATE( var_tmp(ks:ke,js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4265	!
4266	!-- Temporary copy of the variable
4267	var_tmp(ks:ke,js:je,is:ie) = var(ks:ke,js:je,is:ie)
4268	!
4269	!-- Resize the array
4270	DEALLOCATE( var )
4271	ALLOCATE( var(ks:ke,js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4272	!
4273	!-- Transfer temporary copy back to original array
4274	var(ks:ke,js:je,is:ie) = var_tmp(ks:ke,js:je,is:ie)
4275
4276	END SUBROUTINE resize_array_3d_real
4277
4278	!------------------------------------------------------------------------------!
4279	! Description:
4280	! ------------
4281	!> Resize 4D Real array: (:,:,nys:nyn,nxl:nxr) -> (:,nysg:nyng,nxlg:nxrg)
4282	!------------------------------------------------------------------------------!
4283	SUBROUTINE resize_array_4d_real( var, k1s, k1e, k2s, k2e, js, je, is, ie )
4284
4285	IMPLICIT NONE
4286
4287	INTEGER(iwp) :: je !< upper index bound along y direction
4288	INTEGER(iwp) :: js !< lower index bound along y direction
4289	INTEGER(iwp) :: ie !< upper index bound along x direction
4290	INTEGER(iwp) :: is !< lower index bound along x direction
4291	INTEGER(iwp) :: k1e !< upper bound of treated array in z-direction
4292	INTEGER(iwp) :: k1s !< lower bound of treated array in z-direction
4293	INTEGER(iwp) :: k2e !< upper bound of treated array along parameter space
4294	INTEGER(iwp) :: k2s !< lower bound of treated array along parameter space
4295
4296	REAL(wp), DIMENSION(:,:,:,:), ALLOCATABLE :: var !< treated variable
4297	REAL(wp), DIMENSION(:,:,:,:), ALLOCATABLE :: var_tmp !< temporary copy
4298	!
4299	!-- Allocate temporary variable
4300	ALLOCATE( var_tmp(k1s:k1e,k2s:k2e,js-