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Last change on this file since 3543 was 3543, checked in by suehring, 4 years ago
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1	!> @file netcdf_data_input_mod.f90
2	!------------------------------------------------------------------------------!
3	! This file is part of the PALM model system.
4	!
5	! PALM is free software: you can redistribute it and/or modify it under the
6	! terms of the GNU General Public License as published by the Free Software
7	! Foundation, either version 3 of the License, or (at your option) any later
8	! version.
9	!
10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
13	!
14	! You should have received a copy of the GNU General Public License along with
15	! PALM. If not, see <http://www.gnu.org/licenses/>.
16	!
17	! Copyright 1997-2018 Leibniz Universitaet Hannover
18	!------------------------------------------------------------------------------!
19	!
20	! Current revisions:
21	! -----------------
22	!
23	!
24	! Former revisions:
25	! -----------------
26	! $Id: netcdf_data_input_mod.f90 3543 2018-11-20 17:06:15Z suehring $
27	! Revise ghost point exchange and resizing of input variables
28	!
29	! 3542 2018-11-20 17:04:13Z suehring
30	! - read optional attributes from file
31	! - set default origin_time
32	!
33	! 3518 2018-11-12 18:10:23Z suehring
34	! Additional checks
35	!
36	! 3516 2018-11-12 15:49:39Z gronemeier
37	! bugfix: - difference in z coordinate between file and PALM must be <1e-6
38	! - output of error 553 for all PEs
39	!
40	! 3498 2018-11-07 10:53:03Z gronemeier
41	! Bugfix: print error message by processor which encounters the error
42	!
43	! 3485 2018-11-03 17:09:40Z gronemeier
44	! - get central meridian from origin_lon if crs does not exist
45	! - set default origin_lon to 0
46	!
47	! 3483 2018-11-02 14:19:26Z raasch
48	! bugfix: misplaced directives for netCDF fixed
49	!
50	! 3474 2018-10-30 21:07:39Z kanani
51	! Add UV exposure model input (Schrempf)
52	!
53	! 3472 2018-10-30 20:43:50Z suehring
54	! Salsa implemented
55	!
56	! 3464 2018-10-30 18:08:55Z kanani
57	! Define coordinate reference system (crs) and read from input dataset
58	! Revise default values for reference coordinates
59	!
60	! 3459 2018-10-30 15:04:11Z gronemeier
61	! from chemistry branch r3443, banzhafs, Russo:
62	! Uncommented lines on dimension of surface_fractions
63	! Removed par_emis_time_factor variable, moved to chem_emissions_mod
64	! Initialized nspec and other emission variables at time of declaration
65	! Modified EXPERT mode to PRE-PROCESSED mode
66	! Introduced Chemistry static netcdf file
67	! Added the routine for reading-in netcdf data for chemistry
68	! Added routines to get_variable interface specific for chemistry files
69	!
70	! 3429 2018-10-25 13:04:23Z knoop
71	! add default values of origin_x/y/z
72	!
73	! 3404 2018-10-23 13:29:11Z suehring
74	! Consider time-dependent geostrophic wind components in offline nesting
75	!
76	! 3376 2018-10-19 10:15:32Z suehring
77	! Additional check for consistent building initialization implemented
78	!
79	! 3347 2018-10-15 14:21:08Z suehring
80	! Subroutine renamed
81	!
82	! 3257 2018-09-17 17:11:46Z suehring
83	! (from branch resler)
84	! Formatting
85	!
86	! 3298 2018-10-02 12:21:11Z kanani
87	! Modified EXPERT mode to PRE-PROCESSED mode (Russo)
88	! Introduced Chemistry static netcdf file (Russo)
89	! Added the routine for reading-in netcdf data for chemistry (Russo)
90	! Added routines to get_variable interface specific for chemistry files (Russo)
91	!
92	! 3257 2018-09-17 17:11:46Z suehring
93	! Adjust checks for building_type and building_id, which is necessary after
94	! topography filtering (building_type and id can be modified by the filtering).
95	!
96	! 3254 2018-09-17 10:53:57Z suehring
97	! Additional check for surface_fractions and and checks for building_id and
98	! building_type extended.
99	!
100	! 3241 2018-09-12 15:02:00Z raasch
101	! unused variables removed
102	!
103	! 3215 2018-08-29 09:58:59Z suehring
104	! - Separate input of soil properties from input of atmospheric data. This
105	! enables input of soil properties also in child domains without any
106	! dependence on atmospheric input
107	! - Check for missing initial 1D/3D data in dynamic input file
108	! - Revise checks for matching grid spacing in model and input file
109	! - Bugfix, add netcdf4_parallel directive for collective read operation
110	! - Revise error message numbers
111	!
112	! 3209 2018-08-27 16:58:37Z suehring
113	! Read zsoil dimension length only if soil variables are provided
114	!
115	! 3183 2018-07-27 14:25:55Z suehring
116	! Adjust input of dynamic driver according to revised Inifor version.
117	! Replace simulated_time by time_since_reference_point.
118	! Rename variables in mesoscale-offline nesting mode.
119	!
120	! 3182 2018-07-27 13:36:03Z suehring
121	! Slightly revise check for surface_fraction in order to check only the relevant
122	! fractions
123	!
124	! 3103 2018-07-04 17:30:52Z suehring
125	! New check for negative terrain heights
126	!
127	! 3089 2018-06-27 13:20:38Z suehring
128	! Revise call for message routine in case of local data inconsistencies.
129	!
130	! 3054 2018-06-01 16:08:59Z gronemeier
131	! Bugfix: force an MPI abort if errors occur while reading building heights
132	! from ASCII file
133	!
134	! 3053 2018-06-01 12:59:07Z suehring
135	! Revise checks for variable surface_fraction
136	!
137	! 3051 2018-05-30 17:43:55Z suehring
138	! - Speed-up NetCDF input
139	! - Revise input routines and remove NetCDF input via IO-blocks since this is
140	! not working in parallel mode in case blocking collective read operations
141	! are done
142	! - Temporarily revoke renaming of input variables in dynamic driver (tend_ug,
143	! tend_vg, zsoil) in order to keep dynamic input file working with current
144	! model version
145	! - More detailed error messages created
146	!
147	! 3045 2018-05-28 07:55:41Z Giersch
148	! Error messages revised
149	!
150	! 3041 2018-05-25 10:39:54Z gronemeier
151	! Add data type for global file attributes
152	! Add read of global attributes of static driver
153	!
154	! 3037 2018-05-24 10:39:29Z gronemeier
155	! renamed 'depth' to 'zsoil'
156	!
157	! 3036 2018-05-24 10:18:26Z gronemeier
158	! Revision of input vars according to UC2 data standard
159	! - renamed 'orography_2D' to 'zt'
160	! - renamed 'buildings_2D' to 'buildings_2d'
161	! - renamed 'buildings_3D' to 'buildings_3d'
162	! - renamed 'leaf_are_density' to 'lad'
163	! - renamed 'basal_are_density' to 'bad'
164	! - renamed 'root_are_density_lad' to 'root_area_dens_r'
165	! - renamed 'root_are_density_lsm' to 'root_area_dens_s'
166	! - renamed 'ls_forcing_ug' to 'tend_ug'
167	! - renamed 'ls_forcing_vg' to 'tend_vg'
168	!
169	! 3019 2018-05-13 07:05:43Z maronga
170	! Improved reading speed of large NetCDF files
171	!
172	! 2963 2018-04-12 14:47:44Z suehring
173	! - Revise checks for static input variables.
174	! - Introduce index for vegetation/wall, pavement/green-wall and water/window
175	! surfaces, for clearer access of surface fraction, albedo, emissivity, etc. .
176	!
177	! 2958 2018-04-11 15:38:13Z suehring
178	! Synchronize longitude and latitude between nested model domains, values are
179	! taken from the root model.
180	!
181	! 2955 2018-04-09 15:14:01Z suehring
182	! Extend checks for consistent setting of buildings, its ID and type.
183	! Add log-points to measure CPU time of NetCDF data input.
184	!
185	! 2953 2018-04-09 11:26:02Z suehring
186	! Bugfix in checks for initialization data
187	!
188	! 2947 2018-04-04 18:01:41Z suehring
189	! Checks for dynamic input revised
190	!
191	! 2946 2018-04-04 17:01:23Z suehring
192	! Bugfix for revision 2945, perform checks only if dynamic input file is
193	! available.
194	!
195	! 2945 2018-04-04 16:27:14Z suehring
196	! - Mimic for topography input slightly revised, in order to enable consistency
197	! checks
198	! - Add checks for dimensions in dynamic input file and move already existing
199	! checks
200	!
201	! 2938 2018-03-27 15:52:42Z suehring
202	! Initial read of geostrophic wind components from dynamic driver.
203	!
204	! 2773 2018-01-30 14:12:54Z suehring
205	! Revise checks for surface_fraction.
206	!
207	! 2925 2018-03-23 14:54:11Z suehring
208	! Check for further inconsistent settings of surface_fractions.
209	! Some messages slightly rephrased and error numbers renamed.
210	!
211	! 2898 2018-03-15 13:03:01Z suehring
212	! Check if each building has a type. Further, check if dimensions in static
213	! input file match the model dimensions.
214	!
215	! 2897 2018-03-15 11:47:16Z suehring
216	! Relax restrictions for topography input, terrain and building heights can be
217	! input separately and are not mandatory any more.
218	!
219	! 2874 2018-03-13 10:55:42Z knoop
220	! Bugfix: wrong placement of netcdf cpp-macros fixed
221	!
222	! 2794 2018-02-07 14:09:43Z knoop
223	! Check if 3D building input is consistent to numeric grid.
224	!
225	! 2773 2018-01-30 14:12:54Z suehring
226	! - Enable initialization with 3D topography.
227	! - Move check for correct initialization in nesting mode to check_parameters.
228	!
229	! 2772 2018-01-29 13:10:35Z suehring
230	! Initialization of simulation independent on land-surface model.
231	!
232	! 2746 2018-01-15 12:06:04Z suehring
233	! Read plant-canopy variables independently on land-surface model usage
234	!
235	! 2718 2018-01-02 08:49:38Z maronga
236	! Corrected "Former revisions" section
237	!
238	! 2711 2017-12-20 17:04:49Z suehring
239	! Rename subroutine close_file to avoid double-naming.
240	!
241	! 2700 2017-12-15 14:12:35Z suehring
242	!
243	! 2696 2017-12-14 17:12:51Z kanani
244	! Initial revision (suehring)
245	!
246	!
247	!
248	!
249	! Authors:
250	! --------
251	! @author Matthias Suehring
252	!
253	! Description:
254	! ------------
255	!> Modulue contains routines to input data according to Palm input data
256	!> standart using dynamic and static input files.
257	!> @todo - Chemistry: revise reading of netcdf file and ajdust formatting according to standard!!!
258	!> @todo - Order input alphabetically
259	!> @todo - Revise error messages and error numbers
260	!> @todo - Input of missing quantities (chemical species, emission rates)
261	!> @todo - Defninition and input of still missing variable attributes
262	!> @todo - Input of initial geostrophic wind profiles with cyclic conditions.
263	!------------------------------------------------------------------------------!
264	MODULE netcdf_data_input_mod
265
266	USE control_parameters, &
267	ONLY: coupling_char, io_blocks, io_group
268
269	USE cpulog, &
270	ONLY: cpu_log, log_point_s
271
272	USE indices, &
273	ONLY: nbgp
274
275	USE kinds
276
277	#if defined ( __netcdf )
278	USE NETCDF
279	#endif
280
281	USE pegrid
282
283	USE surface_mod, &
284	ONLY: ind_pav_green, ind_veg_wall, ind_wat_win
285	!
286	!-- Define type for dimensions.
287	TYPE dims_xy
288	INTEGER(iwp) :: nx !< dimension length in x
289	INTEGER(iwp) :: ny !< dimension length in y
290	INTEGER(iwp) :: nz !< dimension length in z
291	REAL(wp), DIMENSION(:), ALLOCATABLE :: x !< dimension array in x
292	REAL(wp), DIMENSION(:), ALLOCATABLE :: y !< dimension array in y
293	REAL(wp), DIMENSION(:), ALLOCATABLE :: z !< dimension array in z
294	END TYPE dims_xy
295	!
296	!-- Define data type for nesting in larger-scale models like COSMO.
297	!-- Data type comprises u, v, w, pt, and q at lateral and top boundaries.
298	TYPE nest_offl_type
299
300	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names
301
302	INTEGER(iwp) :: nt !< number of time levels in dynamic input file
303	INTEGER(iwp) :: nzu !< number of vertical levels on scalar grid in dynamic input file
304	INTEGER(iwp) :: nzw !< number of vertical levels on w grid in dynamic input file
305	INTEGER(iwp) :: tind !< time index for reference time in mesoscale-offline nesting
306	INTEGER(iwp) :: tind_p !< time index for following time in mesoscale-offline nesting
307
308	LOGICAL :: init = .FALSE.
309	LOGICAL :: from_file = .FALSE.
310
311	REAL(wp), DIMENSION(:), ALLOCATABLE :: surface_pressure !< time dependent surface pressure
312	REAL(wp), DIMENSION(:), ALLOCATABLE :: time !< time levels in dynamic input file
313	REAL(wp), DIMENSION(:), ALLOCATABLE :: zu_atmos !< vertical levels at scalar grid in dynamic input file
314	REAL(wp), DIMENSION(:), ALLOCATABLE :: zw_atmos !< vertical levels at w grid in dynamic input file
315
316	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: ug !< domain-averaged geostrophic component
317	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: vg !< domain-averaged geostrophic component
318
319	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: u_left !< u-component at left boundary
320	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: v_left !< v-component at left boundary
321	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: w_left !< w-component at left boundary
322	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: q_left !< mixing ratio at left boundary
323	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: pt_left !< potentital temperautre at left boundary
324
325	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: u_north !< u-component at north boundary
326	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: v_north !< v-component at north boundary
327	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: w_north !< w-component at north boundary
328	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: q_north !< mixing ratio at north boundary
329	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: pt_north !< potentital temperautre at north boundary
330
331	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: u_right !< u-component at right boundary
332	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: v_right !< v-component at right boundary
333	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: w_right !< w-component at right boundary
334	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: q_right !< mixing ratio at right boundary
335	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: pt_right !< potentital temperautre at right boundary
336
337	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: u_south !< u-component at south boundary
338	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: v_south !< v-component at south boundary
339	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: w_south !< w-component at south boundary
340	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: q_south !< mixing ratio at south boundary
341	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: pt_south !< potentital temperautre at south boundary
342
343	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: u_top !< u-component at top boundary
344	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: v_top !< v-component at top boundary
345	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: w_top !< w-component at top boundary
346	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: q_top !< mixing ratio at top boundary
347	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: pt_top !< potentital temperautre at top boundary
348
349	END TYPE nest_offl_type
350
351	TYPE init_type
352
353	CHARACTER(LEN=23) :: origin_time = '2000-01-01 00:00:00 +00' !< reference time of input data
354
355	INTEGER(iwp) :: lod_msoil !< level of detail - soil moisture
356	INTEGER(iwp) :: lod_pt !< level of detail - pt
357	INTEGER(iwp) :: lod_q !< level of detail - q
358	INTEGER(iwp) :: lod_tsoil !< level of detail - soil temperature
359	INTEGER(iwp) :: lod_u !< level of detail - u-component
360	INTEGER(iwp) :: lod_v !< level of detail - v-component
361	INTEGER(iwp) :: lod_w !< level of detail - w-component
362	INTEGER(iwp) :: nx !< number of scalar grid points along x in dynamic input file
363	INTEGER(iwp) :: nxu !< number of u grid points along x in dynamic input file
364	INTEGER(iwp) :: ny !< number of scalar grid points along y in dynamic input file
365	INTEGER(iwp) :: nyv !< number of v grid points along y in dynamic input file
366	INTEGER(iwp) :: nzs !< number of vertical soil levels in dynamic input file
367	INTEGER(iwp) :: nzu !< number of vertical levels on scalar grid in dynamic input file
368	INTEGER(iwp) :: nzw !< number of vertical levels on w grid in dynamic input file
369
370	LOGICAL :: from_file_msoil = .FALSE. !< flag indicating whether soil moisture is already initialized from file
371	LOGICAL :: from_file_pt = .FALSE. !< flag indicating whether pt is already initialized from file
372	LOGICAL :: from_file_q = .FALSE. !< flag indicating whether q is already initialized from file
373	LOGICAL :: from_file_tsoil = .FALSE. !< flag indicating whether soil temperature is already initialized from file
374	LOGICAL :: from_file_u = .FALSE. !< flag indicating whether u is already initialized from file
375	LOGICAL :: from_file_ug = .FALSE. !< flag indicating whether ug is already initialized from file
376	LOGICAL :: from_file_v = .FALSE. !< flag indicating whether v is already initialized from file
377	LOGICAL :: from_file_vg = .FALSE. !< flag indicating whether ug is already initialized from file
378	LOGICAL :: from_file_w = .FALSE. !< flag indicating whether w is already initialized from file
379
380	REAL(wp) :: fill_msoil !< fill value for soil moisture
381	REAL(wp) :: fill_pt !< fill value for pt
382	REAL(wp) :: fill_q !< fill value for q
383	REAL(wp) :: fill_tsoil !< fill value for soil temperature
384	REAL(wp) :: fill_u !< fill value for u
385	REAL(wp) :: fill_v !< fill value for v
386	REAL(wp) :: fill_w !< fill value for w
387	REAL(wp) :: latitude = 0.0_wp !< latitude of the lower left corner
388	REAL(wp) :: longitude = 0.0_wp !< longitude of the lower left corner
389	REAL(wp) :: origin_x = 500000.0_wp !< UTM easting of the lower left corner
390	REAL(wp) :: origin_y = 0.0_wp !< UTM northing of the lower left corner
391	REAL(wp) :: origin_z = 0.0_wp !< reference height of input data
392	REAL(wp) :: rotation_angle = 0.0_wp !< rotation angle of input data
393
394	REAL(wp), DIMENSION(:), ALLOCATABLE :: msoil_1d !< initial vertical profile of soil moisture
395	REAL(wp), DIMENSION(:), ALLOCATABLE :: pt_init !< initial vertical profile of pt
396	REAL(wp), DIMENSION(:), ALLOCATABLE :: q_init !< initial vertical profile of q
397	REAL(wp), DIMENSION(:), ALLOCATABLE :: tsoil_1d !< initial vertical profile of soil temperature
398	REAL(wp), DIMENSION(:), ALLOCATABLE :: u_init !< initial vertical profile of u
399	REAL(wp), DIMENSION(:), ALLOCATABLE :: ug_init !< initial vertical profile of ug
400	REAL(wp), DIMENSION(:), ALLOCATABLE :: v_init !< initial vertical profile of v
401	REAL(wp), DIMENSION(:), ALLOCATABLE :: vg_init !< initial vertical profile of ug
402	REAL(wp), DIMENSION(:), ALLOCATABLE :: w_init !< initial vertical profile of w
403	REAL(wp), DIMENSION(:), ALLOCATABLE :: z_soil !< vertical levels in soil in dynamic input file, used for interpolation
404	REAL(wp), DIMENSION(:), ALLOCATABLE :: zu_atmos !< vertical levels at scalar grid in dynamic input file, used for interpolation
405	REAL(wp), DIMENSION(:), ALLOCATABLE :: zw_atmos !< vertical levels at w grid in dynamic input file, used for interpolation
406
407
408	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: msoil_3d !< initial 3d soil moisture provide by Inifor and interpolated onto soil grid
409	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: tsoil_3d !< initial 3d soil temperature provide by Inifor and interpolated onto soil grid
410
411	END TYPE init_type
412
413	!-- Data type for the general information of chemistry emissions, do not dependent on the particular chemical species
414	TYPE chem_emis_att_type
415
416	!-DIMENSIONS
417	INTEGER(iwp) :: nspec=0 !< number of chem species for which emission values are provided
418	INTEGER(iwp) :: ncat=0 !< number of emission categories
419	INTEGER(iwp) :: nvoc=0 !< number of VOCs components
420	INTEGER(iwp) :: npm=0 !< number of PMs components
421	INTEGER(iwp) :: nnox=2 !< number of NOx components: NO and NO2
422	INTEGER(iwp) :: nsox=2 !< number of SOx components: SO and SO4
423	INTEGER(iwp) :: nhoursyear !< number of hours of a specific year in the HOURLY mode
424	! of the default mode
425	INTEGER(iwp) :: nmonthdayhour !< number of month days and hours in the MDH mode
426	! of the default mode
427	INTEGER(iwp) :: dt_emission !< Number of emissions timesteps for one year
428	! in the pre-processed emissions case
429	!-- 1d emission input variables
430	CHARACTER (LEN=25),ALLOCATABLE, DIMENSION(:) :: pm_name !< Names of PMs components
431	CHARACTER (LEN=25),ALLOCATABLE, DIMENSION(:) :: cat_name !< Emission categories names
432	CHARACTER (LEN=25),ALLOCATABLE, DIMENSION(:) :: species_name !< Names of emission chemical species
433	CHARACTER (LEN=25),ALLOCATABLE, DIMENSION(:) :: voc_name !< Names of VOCs components
434	CHARACTER (LEN=25) :: units !< Units
435
436	INTEGER(iwp) :: i_hour !< indices for assigning the emission values at different timesteps
437	INTEGER(iwp),ALLOCATABLE, DIMENSION(:) :: cat_index !< Index of emission categories
438	INTEGER(iwp),ALLOCATABLE, DIMENSION(:) :: species_index !< Index of emission chem species
439
440	REAL(wp),ALLOCATABLE, DIMENSION(:) :: xm !< Molecular masses of emission chem species
441
442	!-- 2d emission input variables
443	REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: hourly_emis_time_factor !< Time factors for HOURLY emissions (DEFAULT mode)
444	REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: mdh_emis_time_factor !< Time factors for MDH emissions (DEFAULT mode)
445	REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: nox_comp !< Composition of NO and NO2
446	REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: sox_comp !< Composition of SO2 and SO4
447	REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: voc_comp !< Composition of different VOC components (number not fixed)
448
449	!-- 3d emission input variables
450	REAL(wp),ALLOCATABLE, DIMENSION(:,:,:) :: pm_comp !< Composition of different PMs components (number not fixed)
451
452	END TYPE chem_emis_att_type
453
454
455	!-- Data type for the values of chemistry emissions ERUSSO
456	TYPE chem_emis_val_type
457
458	!REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: stack_height !< stack height
459
460	!-- 3d emission input variables
461	REAL(wp),ALLOCATABLE, DIMENSION(:,:,:) :: default_emission_data !< Input Values emissions DEFAULT mode
462
463	!-- 4d emission input variables
464	REAL(wp),ALLOCATABLE, DIMENSION(:,:,:,:) :: preproc_emission_data !< Input Values emissions PRE-PROCESSED mode
465
466	END TYPE chem_emis_val_type
467
468	!
469	!-- Define data structures for different input data types.
470	!-- 8-bit Integer 2D
471	TYPE int_2d_8bit
472	INTEGER(KIND=1) :: fill = -127 !< fill value
473	INTEGER(KIND=1), DIMENSION(:,:), ALLOCATABLE :: var !< respective variable
474
475	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
476	END TYPE int_2d_8bit
477	!
478	!-- 8-bit Integer 3D
479	TYPE int_3d_8bit
480	INTEGER(KIND=1) :: fill = -127 !< fill value
481	INTEGER(KIND=1), DIMENSION(:,:,:), ALLOCATABLE :: var_3d !< respective variable
482
483	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
484	END TYPE int_3d_8bit
485	!
486	!-- 32-bit Integer 2D
487	TYPE int_2d_32bit
488	INTEGER(iwp) :: fill = -9999 !< fill value
489	INTEGER(iwp), DIMENSION(:,:), ALLOCATABLE :: var !< respective variable
490
491	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
492	END TYPE int_2d_32bit
493
494	!
495	!-- Define data type to read 2D real variables
496	TYPE real_2d
497	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
498
499	REAL(wp) :: fill = -9999.9_wp !< fill value
500	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: var !< respective variable
501	END TYPE real_2d
502
503	!
504	!-- Define data type to read 3D real variables
505	TYPE real_3d
506	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
507
508	INTEGER(iwp) :: nz !< number of grid points along vertical dimension
509
510	REAL(wp) :: fill = -9999.9_wp !< fill value
511	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: var !< respective variable
512	END TYPE real_3d
513	!
514	!-- Define data structure where the dimension and type of the input depends
515	!-- on the given level of detail.
516	!-- For buildings, the input is either 2D float, or 3d byte.
517	TYPE build_in
518	INTEGER(iwp) :: lod = 1 !< level of detail
519	INTEGER(KIND=1) :: fill2 = -127 !< fill value for lod = 2
520	INTEGER(iwp) :: nz !< number of vertical layers in file
521	INTEGER(KIND=1), DIMENSION(:,:,:), ALLOCATABLE :: var_3d !< 3d variable (lod = 2)
522
523	REAL(wp), DIMENSION(:), ALLOCATABLE :: z !< vertical coordinate for 3D building, used for consistency check
524
525	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
526
527	REAL(wp) :: fill1 = -9999.9_wp !< fill values for lod = 1
528	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: var_2d !< 2d variable (lod = 1)
529	END TYPE build_in
530
531	!
532	!-- For soil_type, the input is either 2D or 3D one-byte integer.
533	TYPE soil_in
534	INTEGER(iwp) :: lod = 1 !< level of detail
535	INTEGER(KIND=1) :: fill = -127 !< fill value for lod = 2
536	INTEGER(KIND=1), DIMENSION(:,:), ALLOCATABLE :: var_2d !< 2d variable (lod = 1)
537	INTEGER(KIND=1), DIMENSION(:,:,:), ALLOCATABLE :: var_3d !< 3d variable (lod = 2)
538
539	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
540	END TYPE soil_in
541
542	!
543	!-- Define data type for fractions between surface types
544	TYPE fracs
545	INTEGER(iwp) :: nf !< total number of fractions
546	INTEGER(iwp), DIMENSION(:), ALLOCATABLE :: nfracs !< dimension array for fraction
547
548	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
549
550	REAL(wp) :: fill = -9999.9_wp !< fill value
551	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: frac !< respective fraction between different surface types
552	END TYPE fracs
553	!
554	!-- Data type for parameter lists, Depending on the given level of detail,
555	!-- the input is 3D or 4D
556	TYPE pars
557	INTEGER(iwp) :: lod = 1 !< level of detail
558	INTEGER(iwp) :: np !< total number of parameters
559	INTEGER(iwp) :: nz !< vertical dimension - number of soil layers
560	INTEGER(iwp), DIMENSION(:), ALLOCATABLE :: layers !< dimension array for soil layers
561	INTEGER(iwp), DIMENSION(:), ALLOCATABLE :: pars !< dimension array for parameters
562
563	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
564
565	REAL(wp) :: fill = -9999.9_wp !< fill value
566	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: pars_xy !< respective parameters, level of detail = 1
567	REAL(wp), DIMENSION(:,:,:,:), ALLOCATABLE :: pars_xyz !< respective parameters, level of detail = 2
568	END TYPE pars
569	!
570	!-- Define type for global file attributes
571	!-- Please refer to the PALM data standard for a detailed description of each
572	!-- attribute.
573	TYPE global_atts_type
574	CHARACTER(LEN=12 ) :: acronym !< acronym of institution
575	CHARACTER(LEN=7) :: acronym_char = 'acronym' !< name of attribute
576	CHARACTER(LEN=200) :: author !< first name, last name, email adress
577	CHARACTER(LEN=6) :: author_char = 'author' !< name of attribute
578	CHARACTER(LEN=12 ) :: campaign = 'PALM-4U' !< name of campaign
579	CHARACTER(LEN=8) :: campaign_char = 'campaign' !< name of attribute
580	CHARACTER(LEN=200) :: comment !< comment to data
581	CHARACTER(LEN=7) :: comment_char = 'comment' !< name of attribute
582	CHARACTER(LEN=200) :: contact_person !< first name, last name, email adress
583	CHARACTER(LEN=14) :: contact_person_char = 'contact_person' !< name of attribute
584	CHARACTER(LEN=200) :: conventions = 'CF-1.7' !< netCDF convention
585	CHARACTER(LEN=11) :: conventions_char = 'Conventions' !< name of attribute
586	CHARACTER(LEN=23 ) :: creation_time !< creation time of data set
587	CHARACTER(LEN=13) :: creation_time_char = 'creation_time' !< name of attribute
588	CHARACTER(LEN=16 ) :: data_content !< content of data set
589	CHARACTER(LEN=12) :: data_content_char = 'data_content' !< name of attribute
590	CHARACTER(LEN=200) :: dependencies !< dependencies of data set
591	CHARACTER(LEN=12) :: dependencies_char = 'dependencies' !< name of attribute
592	CHARACTER(LEN=200) :: history !< information about data processing
593	CHARACTER(LEN=7) :: history_char = 'history' !< name of attribute
594	CHARACTER(LEN=200) :: institution !< name of responsible institution
595	CHARACTER(LEN=11) :: institution_char = 'institution' !< name of attribute
596	CHARACTER(LEN=200) :: keywords !< keywords of data set
597	CHARACTER(LEN=8) :: keywords_char = 'keywords' !< name of attribute
598	CHARACTER(LEN=200) :: licence !< licence of data set
599	CHARACTER(LEN=7) :: licence_char = 'licence' !< name of attribute
600	CHARACTER(LEN=200) :: location !< place which refers to data set
601	CHARACTER(LEN=8) :: location_char = 'location' !< name of attribute
602	CHARACTER(LEN=10) :: origin_lat_char = 'origin_lat' !< name of attribute
603	CHARACTER(LEN=10) :: origin_lon_char = 'origin_lon' !< name of attribute
604	CHARACTER(LEN=23 ) :: origin_time = '2000-01-01 00:00:00 +00' !< reference time
605	CHARACTER(LEN=11) :: origin_time_char = 'origin_time' !< name of attribute
606	CHARACTER(LEN=8) :: origin_x_char = 'origin_x' !< name of attribute
607	CHARACTER(LEN=8) :: origin_y_char = 'origin_y' !< name of attribute
608	CHARACTER(LEN=8) :: origin_z_char = 'origin_z' !< name of attribute
609	CHARACTER(LEN=12) :: palm_version_char = 'palm_version' !< name of attribute
610	CHARACTER(LEN=200) :: references !< literature referring to data set
611	CHARACTER(LEN=10) :: references_char = 'references' !< name of attribute
612	CHARACTER(LEN=14) :: rotation_angle_char = 'rotation_angle' !< name of attribute
613	CHARACTER(LEN=12 ) :: site !< name of model domain
614	CHARACTER(LEN=4) :: site_char = 'site' !< name of attribute
615	CHARACTER(LEN=200) :: source !< source of data set
616	CHARACTER(LEN=6) :: source_char = 'source' !< name of attribute
617	CHARACTER(LEN=200) :: title !< title of data set
618	CHARACTER(LEN=5) :: title_char = 'title' !< name of attribute
619	CHARACTER(LEN=7) :: version_char = 'version' !< name of attribute
620
621	INTEGER(iwp) :: version !< version of data set
622
623	REAL(wp) :: origin_lat !< latitude of lower left corner
624	REAL(wp) :: origin_lon !< longitude of lower left corner
625	REAL(wp) :: origin_x !< easting (UTM coordinate) of lower left corner
626	REAL(wp) :: origin_y !< northing (UTM coordinate) of lower left corner
627	REAL(wp) :: origin_z !< reference height
628	REAL(wp) :: palm_version !< PALM version of data set
629	REAL(wp) :: rotation_angle !< rotation angle of coordinate system of data set
630	END TYPE global_atts_type
631	!
632	!-- Define type for coordinate reference system (crs)
633	TYPE crs_type
634	CHARACTER(LEN=200) :: epsg_code = 'EPSG:25831' !< EPSG code
635	CHARACTER(LEN=200) :: grid_mapping_name = 'transverse_mercator' !< name of grid mapping
636	CHARACTER(LEN=200) :: long_name = 'coordinate reference system' !< name of variable crs
637	CHARACTER(LEN=200) :: units = 'm' !< unit of crs
638
639	REAL(wp) :: false_easting = 500000.0_wp !< false easting
640	REAL(wp) :: false_northing = 0.0_wp !< false northing
641	REAL(wp) :: inverse_flattening = 298.257223563_wp !< 1/f (default for WGS84)
642	REAL(wp) :: latitude_of_projection_origin = 0.0_wp !< latitude of projection origin
643	REAL(wp) :: longitude_of_central_meridian = 3.0_wp !< longitude of central meridian of UTM zone (default: zone 31)
644	REAL(wp) :: longitude_of_prime_meridian = 0.0_wp !< longitude of prime meridian
645	REAL(wp) :: scale_factor_at_central_meridian = 0.9996_wp !< scale factor of UTM coordinates
646	REAL(wp) :: semi_major_axis = 6378137.0_wp !< length of semi major axis (default for WGS84)
647	END TYPE crs_type
648
649	!
650	!-- Define variables
651	TYPE(crs_type) :: coord_ref_sys !< coordinate reference system
652
653	TYPE(dims_xy) :: dim_static !< data structure for x, y-dimension in static input file
654
655	TYPE(nest_offl_type) :: nest_offl !< data structure for data input at lateral and top boundaries (provided by Inifor)
656
657	TYPE(init_type) :: init_3d !< data structure for the initialization of the 3D flow and soil fields
658	TYPE(init_type) :: init_model !< data structure for the initialization of the model
659
660	!
661	!-- Define 2D variables of type NC_BYTE
662	TYPE(int_2d_8bit) :: albedo_type_f !< input variable for albedo type
663	TYPE(int_2d_8bit) :: building_type_f !< input variable for building type
664	TYPE(int_2d_8bit) :: pavement_type_f !< input variable for pavenment type
665	TYPE(int_2d_8bit) :: street_crossing_f !< input variable for water type
666	TYPE(int_2d_8bit) :: street_type_f !< input variable for water type
667	TYPE(int_2d_8bit) :: vegetation_type_f !< input variable for vegetation type
668	TYPE(int_2d_8bit) :: water_type_f !< input variable for water type
669	!
670	!-- Define 3D variables of type NC_BYTE
671	TYPE(int_3d_8bit) :: building_obstruction_f !< input variable for building obstruction
672	TYPE(int_3d_8bit) :: building_obstruction_full !< input variable for building obstruction
673	!
674	!-- Define 2D variables of type NC_INT
675	TYPE(int_2d_32bit) :: building_id_f !< input variable for building ID
676	!
677	!-- Define 2D variables of type NC_FLOAT
678	TYPE(real_2d) :: terrain_height_f !< input variable for terrain height
679	TYPE(real_2d) :: uvem_irradiance_f !< input variable for uvem irradiance lookup table
680	TYPE(real_2d) :: uvem_integration_f !< input variable for uvem integration
681	!
682	!-- Define 3D variables of type NC_FLOAT
683	TYPE(real_3d) :: basal_area_density_f !< input variable for basal area density - resolved vegetation
684	TYPE(real_3d) :: leaf_area_density_f !< input variable for leaf area density - resolved vegetation
685	TYPE(real_3d) :: root_area_density_lad_f !< input variable for root area density - resolved vegetation
686	TYPE(real_3d) :: root_area_density_lsm_f !< input variable for root area density - parametrized vegetation
687	TYPE(real_3d) :: uvem_radiance_f !< input variable for uvem radiance lookup table
688	TYPE(real_3d) :: uvem_projarea_f !< input variable for uvem projection area lookup table
689	!
690	!-- Define input variable for buildings
691	TYPE(build_in) :: buildings_f !< input variable for buildings
692	!
693	!-- Define input variables for soil_type
694	TYPE(soil_in) :: soil_type_f !< input variable for soil type
695
696	TYPE(fracs) :: surface_fraction_f !< input variable for surface fraction
697
698	TYPE(pars) :: albedo_pars_f !< input variable for albedo parameters
699	TYPE(pars) :: building_pars_f !< input variable for building parameters
700	TYPE(pars) :: pavement_pars_f !< input variable for pavement parameters
701	TYPE(pars) :: pavement_subsurface_pars_f !< input variable for pavement parameters
702	TYPE(pars) :: soil_pars_f !< input variable for soil parameters
703	TYPE(pars) :: vegetation_pars_f !< input variable for vegetation parameters
704	TYPE(pars) :: water_pars_f !< input variable for water parameters
705
706	TYPE(chem_emis_att_type) :: chem_emis_att !< Input Information of Chemistry Emission Data from netcdf
707	TYPE(chem_emis_val_type), ALLOCATABLE, DIMENSION(:) :: chem_emis !< Input Chemistry Emission Data from netcdf
708
709	CHARACTER(LEN=3) :: char_lod = 'lod' !< name of level-of-detail attribute in NetCDF file
710
711	CHARACTER(LEN=10) :: char_fill = '_FillValue' !< name of fill value attribute in NetCDF file
712
713	CHARACTER(LEN=100) :: input_file_static = 'PIDS_STATIC' !< Name of file which comprises static input data
714	CHARACTER(LEN=100) :: input_file_dynamic = 'PIDS_DYNAMIC' !< Name of file which comprises dynamic input data
715	CHARACTER(LEN=100) :: input_file_chem = 'PIDS_CHEM' !< Name of file which comprises chemistry input data
716	CHARACTER(LEN=100) :: input_file_uvem = 'PIDS_UVEM' !< Name of file which comprises static uv_exposure model input data
717	CHARACTER(LEN=100) :: input_file_vm = 'PIDS_VM' !< Name of file which comprises virtual measurement data
718
719	CHARACTER (LEN=25), ALLOCATABLE, DIMENSION(:) :: string_values !< output of string variables read from netcdf input files
720
721	INTEGER(iwp) :: id_emis !< NetCDF id of input file for chemistry emissions: TBD: It has to be removed
722
723	INTEGER(iwp) :: nc_stat !< return value of nf90 function call
724
725	LOGICAL :: input_pids_static = .FALSE. !< Flag indicating whether Palm-input-data-standard file containing static information exists
726	LOGICAL :: input_pids_dynamic = .FALSE. !< Flag indicating whether Palm-input-data-standard file containing dynamic information exists
727	LOGICAL :: input_pids_chem = .FALSE. !< Flag indicating whether Palm-input-data-standard file containing chemistry information exists
728	LOGICAL :: input_pids_uvem = .FALSE. !< Flag indicating whether uv-expoure-model input file containing static information exists
729	LOGICAL :: input_pids_vm = .FALSE. !< Flag indicating whether input file for virtual measurements exist
730
731	LOGICAL :: collective_read = .FALSE. !< Enable NetCDF collective read
732
733	TYPE(global_atts_type) :: input_file_atts !< global attributes of input file
734
735	SAVE
736
737	PRIVATE
738
739	INTERFACE netcdf_data_input_interpolate
740	MODULE PROCEDURE netcdf_data_input_interpolate_1d
741	MODULE PROCEDURE netcdf_data_input_interpolate_1d_soil
742	MODULE PROCEDURE netcdf_data_input_interpolate_2d
743	MODULE PROCEDURE netcdf_data_input_interpolate_3d
744	END INTERFACE netcdf_data_input_interpolate
745
746	INTERFACE netcdf_data_input_check_dynamic
747	MODULE PROCEDURE netcdf_data_input_check_dynamic
748	END INTERFACE netcdf_data_input_check_dynamic
749
750	INTERFACE netcdf_data_input_check_static
751	MODULE PROCEDURE netcdf_data_input_check_static
752	END INTERFACE netcdf_data_input_check_static
753
754	INTERFACE netcdf_data_input_chemistry_data
755	MODULE PROCEDURE netcdf_data_input_chemistry_data
756	END INTERFACE netcdf_data_input_chemistry_data
757
758	INTERFACE netcdf_data_input_get_dimension_length
759	MODULE PROCEDURE netcdf_data_input_get_dimension_length
760	END INTERFACE netcdf_data_input_get_dimension_length
761
762	INTERFACE netcdf_data_input_inquire_file
763	MODULE PROCEDURE netcdf_data_input_inquire_file
764	END INTERFACE netcdf_data_input_inquire_file
765
766	INTERFACE netcdf_data_input_init
767	MODULE PROCEDURE netcdf_data_input_init
768	END INTERFACE netcdf_data_input_init
769
770	INTERFACE netcdf_data_input_att
771	MODULE PROCEDURE netcdf_data_input_att_int
772	MODULE PROCEDURE netcdf_data_input_att_real
773	MODULE PROCEDURE netcdf_data_input_att_string
774	END INTERFACE netcdf_data_input_att
775
776	INTERFACE netcdf_data_input_init_3d
777	MODULE PROCEDURE netcdf_data_input_init_3d
778	END INTERFACE netcdf_data_input_init_3d
779
780	INTERFACE netcdf_data_input_init_lsm
781	MODULE PROCEDURE netcdf_data_input_init_lsm
782	END INTERFACE netcdf_data_input_init_lsm
783
784	INTERFACE netcdf_data_input_offline_nesting
785	MODULE PROCEDURE netcdf_data_input_offline_nesting
786	END INTERFACE netcdf_data_input_offline_nesting
787
788	INTERFACE netcdf_data_input_surface_data
789	MODULE PROCEDURE netcdf_data_input_surface_data
790	END INTERFACE netcdf_data_input_surface_data
791
792	INTERFACE netcdf_data_input_var
793	MODULE PROCEDURE netcdf_data_input_var_char
794	MODULE PROCEDURE netcdf_data_input_var_real_1d
795	MODULE PROCEDURE netcdf_data_input_var_real_2d
796	END INTERFACE netcdf_data_input_var
797
798	INTERFACE netcdf_data_input_uvem
799	MODULE PROCEDURE netcdf_data_input_uvem
800	END INTERFACE netcdf_data_input_uvem
801
802	INTERFACE get_variable
803	MODULE PROCEDURE get_variable_1d_char
804	MODULE PROCEDURE get_variable_1d_int
805	MODULE PROCEDURE get_variable_1d_real
806	MODULE PROCEDURE get_variable_2d_int8
807	MODULE PROCEDURE get_variable_2d_int32
808	MODULE PROCEDURE get_variable_2d_real
809	MODULE PROCEDURE get_variable_3d_int8
810	MODULE PROCEDURE get_variable_3d_real
811	MODULE PROCEDURE get_variable_3d_real_dynamic
812	MODULE PROCEDURE get_variable_4d_to_3d_real
813	MODULE PROCEDURE get_variable_4d_real
814	MODULE PROCEDURE get_variable_5d_to_4d_real
815	MODULE PROCEDURE get_variable_string
816	END INTERFACE get_variable
817
818	INTERFACE get_variable_pr
819	MODULE PROCEDURE get_variable_pr
820	END INTERFACE get_variable_pr
821
822	INTERFACE get_attribute
823	MODULE PROCEDURE get_attribute_real
824	MODULE PROCEDURE get_attribute_int8
825	MODULE PROCEDURE get_attribute_int32
826	MODULE PROCEDURE get_attribute_string
827	END INTERFACE get_attribute
828
829	!
830	!-- Public variables
831	PUBLIC albedo_pars_f, albedo_type_f, basal_area_density_f, buildings_f, &
832	building_id_f, building_pars_f, building_type_f, &
833	chem_emis, chem_emis_att, chem_emis_att_type, chem_emis_val_type, &
834	coord_ref_sys, &
835	init_3d, init_model, input_file_atts, input_file_static, &
836	input_pids_static, &
837	input_pids_dynamic, input_pids_vm, input_file_vm, &
838	leaf_area_density_f, nest_offl, &
839	pavement_pars_f, pavement_subsurface_pars_f, pavement_type_f, &
840	root_area_density_lad_f, root_area_density_lsm_f, soil_pars_f, &
841	soil_type_f, street_crossing_f, street_type_f, surface_fraction_f, &
842	terrain_height_f, vegetation_pars_f, vegetation_type_f, &
843	water_pars_f, water_type_f
844	!
845	!-- Public uv exposure variables
846	PUBLIC building_obstruction_f, input_file_uvem, input_pids_uvem, &
847	netcdf_data_input_uvem, &
848	uvem_integration_f, uvem_irradiance_f, &
849	uvem_projarea_f, uvem_radiance_f
850
851	!
852	!-- Public subroutines
853	PUBLIC netcdf_data_input_check_dynamic, netcdf_data_input_check_static, &
854	netcdf_data_input_chemistry_data, &
855	netcdf_data_input_get_dimension_length, &
856	netcdf_data_input_inquire_file, &
857	netcdf_data_input_init, netcdf_data_input_init_lsm, &
858	netcdf_data_input_init_3d, netcdf_data_input_att, &
859	netcdf_data_input_interpolate, netcdf_data_input_offline_nesting, &
860	netcdf_data_input_surface_data, netcdf_data_input_topo, &
861	netcdf_data_input_var, get_attribute, get_variable, open_read_file
862
863
864	CONTAINS
865
866	!------------------------------------------------------------------------------!
867	! Description:
868	! ------------
869	!> Inquires whether NetCDF input files according to Palm-input-data standard
870	!> exist. Moreover, basic checks are performed.
871	!------------------------------------------------------------------------------!
872	SUBROUTINE netcdf_data_input_inquire_file
873
874	USE control_parameters, &
875	ONLY: topo_no_distinct
876
877	IMPLICIT NONE
878
879	#if defined ( __netcdf )
880	INQUIRE( FILE = TRIM( input_file_static ) // TRIM( coupling_char ), &
881	EXIST = input_pids_static )
882	INQUIRE( FILE = TRIM( input_file_dynamic ) // TRIM( coupling_char ), &
883	EXIST = input_pids_dynamic )
884	INQUIRE( FILE = TRIM( input_file_chem ) // TRIM( coupling_char ), &
885	EXIST = input_pids_chem )
886	INQUIRE( FILE = TRIM( input_file_uvem ) // TRIM( coupling_char ), &
887	EXIST = input_pids_uvem )
888	INQUIRE( FILE = TRIM( input_file_vm ) // TRIM( coupling_char ), &
889	EXIST = input_pids_vm )
890	#endif
891
892	!
893	!-- As long as topography can be input via ASCII format, no distinction
894	!-- between building and terrain can be made. This case, classify all
895	!-- surfaces as default type. Same in case land-surface and urban-surface
896	!-- model are not applied.
897	IF ( .NOT. input_pids_static ) THEN
898	topo_no_distinct = .TRUE.
899	ENDIF
900
901	END SUBROUTINE netcdf_data_input_inquire_file
902
903	!------------------------------------------------------------------------------!
904	! Description:
905	! ------------
906	!> Reads global attributes and coordinate reference system required for
907	!> initialization of the model.
908	!------------------------------------------------------------------------------!
909	SUBROUTINE netcdf_data_input_init
910
911	IMPLICIT NONE
912
913	INTEGER(iwp) :: id_mod !< NetCDF id of input file
914	INTEGER(iwp) :: var_id_crs !< NetCDF id of variable crs
915
916	IF ( .NOT. input_pids_static ) RETURN
917
918	#if defined ( __netcdf )
919	!
920	!-- Open file in read-only mode
921	CALL open_read_file( TRIM( input_file_static ) // &
922	TRIM( coupling_char ), id_mod )
923	!
924	!-- Read global attributes
925	CALL get_attribute( id_mod, input_file_atts%origin_lat_char, &
926	input_file_atts%origin_lat, .TRUE. )
927
928	CALL get_attribute( id_mod, input_file_atts%origin_lon_char, &
929	input_file_atts%origin_lon, .TRUE. )
930
931	CALL get_attribute( id_mod, input_file_atts%origin_time_char, &
932	input_file_atts%origin_time, .TRUE. )
933
934	CALL get_attribute( id_mod, input_file_atts%origin_x_char, &
935	input_file_atts%origin_x, .TRUE. )
936
937	CALL get_attribute( id_mod, input_file_atts%origin_y_char, &
938	input_file_atts%origin_y, .TRUE. )
939
940	CALL get_attribute( id_mod, input_file_atts%origin_z_char, &
941	input_file_atts%origin_z, .TRUE. )
942
943	CALL get_attribute( id_mod, input_file_atts%rotation_angle_char, &
944	input_file_atts%rotation_angle, .TRUE. )
945
946	CALL get_attribute( id_mod, input_file_atts%author_char, input_file_atts%author, .TRUE., no_abort=.FALSE. )
947	CALL get_attribute( id_mod, input_file_atts%contact_person_char, input_file_atts%contact_person, .TRUE., no_abort=.FALSE. )
948	CALL get_attribute( id_mod, input_file_atts%institution_char, input_file_atts%institution, .TRUE., no_abort=.FALSE. )
949	CALL get_attribute( id_mod, input_file_atts%acronym_char, input_file_atts%acronym, .TRUE., no_abort=.FALSE. )
950
951	CALL get_attribute( id_mod, input_file_atts%campaign_char, input_file_atts%campaign, .TRUE., no_abort=.FALSE. )
952	CALL get_attribute( id_mod, input_file_atts%location_char, input_file_atts%location, .TRUE., no_abort=.FALSE. )
953	CALL get_attribute( id_mod, input_file_atts%site_char, input_file_atts%site, .TRUE., no_abort=.FALSE. )
954
955	CALL get_attribute( id_mod, input_file_atts%source_char, input_file_atts%source, .TRUE., no_abort=.FALSE. )
956	CALL get_attribute( id_mod, input_file_atts%references_char, input_file_atts%references, .TRUE., no_abort=.FALSE. )
957	CALL get_attribute( id_mod, input_file_atts%keywords_char, input_file_atts%keywords, .TRUE., no_abort=.FALSE. )
958	CALL get_attribute( id_mod, input_file_atts%licence_char, input_file_atts%licence, .TRUE., no_abort=.FALSE. )
959	CALL get_attribute( id_mod, input_file_atts%comment_char, input_file_atts%comment, .TRUE., no_abort=.FALSE. )
960	!
961	!-- Read coordinate reference system if available
962	nc_stat = NF90_INQ_VARID( id_mod, 'crs', var_id_crs )
963	IF ( nc_stat == NF90_NOERR ) THEN
964	CALL get_attribute( id_mod, 'epsg_code', &
965	coord_ref_sys%epsg_code, &
966	.FALSE., 'crs' )
967	CALL get_attribute( id_mod, 'false_easting', &
968	coord_ref_sys%false_easting, &
969	.FALSE., 'crs' )
970	CALL get_attribute( id_mod, 'false_northing', &
971	coord_ref_sys%false_northing, &
972	.FALSE., 'crs' )
973	CALL get_attribute( id_mod, 'grid_mapping_name', &
974	coord_ref_sys%grid_mapping_name, &
975	.FALSE., 'crs' )
976	CALL get_attribute( id_mod, 'inverse_flattening', &
977	coord_ref_sys%inverse_flattening, &
978	.FALSE., 'crs' )
979	CALL get_attribute( id_mod, 'latitude_of_projection_origin', &
980	coord_ref_sys%latitude_of_projection_origin, &
981	.FALSE., 'crs' )
982	CALL get_attribute( id_mod, 'long_name', &
983	coord_ref_sys%long_name, &
984	.FALSE., 'crs' )
985	CALL get_attribute( id_mod, 'longitude_of_central_meridian', &
986	coord_ref_sys%longitude_of_central_meridian, &
987	.FALSE., 'crs' )
988	CALL get_attribute( id_mod, 'longitude_of_prime_meridian', &
989	coord_ref_sys%longitude_of_prime_meridian, &
990	.FALSE., 'crs' )
991	CALL get_attribute( id_mod, 'scale_factor_at_central_meridian', &
992	coord_ref_sys%scale_factor_at_central_meridian, &
993	.FALSE., 'crs' )
994	CALL get_attribute( id_mod, 'semi_major_axis', &
995	coord_ref_sys%semi_major_axis, &
996	.FALSE., 'crs' )
997	CALL get_attribute( id_mod, 'units', &
998	coord_ref_sys%units, &
999	.FALSE., 'crs' )
1000	ELSE
1001	!
1002	!-- Calculate central meridian from origin_lon
1003	coord_ref_sys%longitude_of_central_meridian = &
1004	CEILING( input_file_atts%origin_lon / 6.0_wp ) * 6.0_wp - 3.0_wp
1005	ENDIF
1006	!
1007	!-- Finally, close input file
1008	CALL close_input_file( id_mod )
1009	#endif
1010	!
1011	!-- Copy latitude, longitude, origin_z, rotation angle on init type
1012	init_model%latitude = input_file_atts%origin_lat
1013	init_model%longitude = input_file_atts%origin_lon
1014	init_model%origin_time = input_file_atts%origin_time
1015	init_model%origin_x = input_file_atts%origin_x
1016	init_model%origin_y = input_file_atts%origin_y
1017	init_model%origin_z = input_file_atts%origin_z
1018	init_model%rotation_angle = input_file_atts%rotation_angle
1019
1020	!
1021	!-- In case of nested runs, each model domain might have different longitude
1022	!-- and latitude, which would result in different Coriolis parameters and
1023	!-- sun-zenith angles. To avoid this, longitude and latitude in each model
1024	!-- domain will be set to the values of the root model. Please note, this
1025	!-- synchronization is required already here.
1026	#if defined( __parallel )
1027	CALL MPI_BCAST( init_model%latitude, 1, MPI_REAL, 0, &
1028	MPI_COMM_WORLD, ierr )
1029	CALL MPI_BCAST( init_model%longitude, 1, MPI_REAL, 0, &
1030	MPI_COMM_WORLD, ierr )
1031	#endif
1032
1033	END SUBROUTINE netcdf_data_input_init
1034
1035	!------------------------------------------------------------------------------!
1036	! Description:
1037	! ------------
1038	!> Read an array of characters.
1039	!------------------------------------------------------------------------------!
1040	SUBROUTINE netcdf_data_input_var_char( val, search_string, id_mod )
1041
1042	IMPLICIT NONE
1043
1044	CHARACTER(LEN=*) :: search_string !< name of the variable
1045	CHARACTER(LEN=*), DIMENSION(:) :: val !< variable which should be read
1046
1047	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1048
1049	#if defined ( __netcdf )
1050	!
1051	!-- Read variable
1052	CALL get_variable( id_mod, search_string, val )
1053	#endif
1054
1055	END SUBROUTINE netcdf_data_input_var_char
1056
1057	!------------------------------------------------------------------------------!
1058	! Description:
1059	! ------------
1060	!> Read an 1D array of REAL values.
1061	!------------------------------------------------------------------------------!
1062	SUBROUTINE netcdf_data_input_var_real_1d( val, search_string, id_mod )
1063
1064	IMPLICIT NONE
1065
1066	CHARACTER(LEN=*) :: search_string !< name of the variable
1067
1068	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1069
1070	REAL(wp), DIMENSION(:) :: val !< variable which should be read
1071
1072	#if defined ( __netcdf )
1073	!
1074	!-- Read variable
1075	CALL get_variable( id_mod, search_string, val )
1076	#endif
1077
1078	END SUBROUTINE netcdf_data_input_var_real_1d
1079
1080	!------------------------------------------------------------------------------!
1081	! Description:
1082	! ------------
1083	!> Read an 1D array of REAL values.
1084	!------------------------------------------------------------------------------!
1085	SUBROUTINE netcdf_data_input_var_real_2d( val, search_string, &
1086	id_mod, d1s, d1e, d2s, d2e )
1087
1088	IMPLICIT NONE
1089
1090	CHARACTER(LEN=*) :: search_string !< name of the variable
1091
1092	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1093	INTEGER(iwp) :: d1e !< end index of first dimension to be read
1094	INTEGER(iwp) :: d2e !< end index of second dimension to be read
1095	INTEGER(iwp) :: d1s !< start index of first dimension to be read
1096	INTEGER(iwp) :: d2s !< start index of second dimension to be read
1097
1098	REAL(wp), DIMENSION(:,:) :: val !< variable which should be read
1099
1100	#if defined ( __netcdf )
1101	!
1102	!-- Read character variable
1103	CALL get_variable( id_mod, search_string, val, d1s, d1e, d2s, d2e )
1104	#endif
1105
1106	END SUBROUTINE netcdf_data_input_var_real_2d
1107
1108	!------------------------------------------------------------------------------!
1109	! Description:
1110	! ------------
1111	!> Read a global string attribute
1112	!------------------------------------------------------------------------------!
1113	SUBROUTINE netcdf_data_input_att_string( val, search_string, id_mod, &
1114	input_file, global, openclose, &
1115	variable_name )
1116
1117	IMPLICIT NONE
1118
1119	CHARACTER(LEN=*) :: search_string !< name of the attribue
1120	CHARACTER(LEN=*) :: val !< attribute
1121
1122	CHARACTER(LEN=*) :: input_file !< name of input file
1123	CHARACTER(LEN=*) :: openclose !< string indicating whether NetCDF needs to be opend or closed
1124	CHARACTER(LEN=*) :: variable_name !< string indicating whether NetCDF needs to be opend or closed
1125
1126	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1127
1128	LOGICAL :: global !< flag indicating a global or a variable's attribute
1129
1130	#if defined ( __netcdf )
1131	!
1132	!-- Open file in read-only mode if necessary
1133	IF ( openclose == 'open' ) THEN
1134	CALL open_read_file( TRIM( input_file ) // TRIM( coupling_char ), &
1135	id_mod )
1136	ENDIF
1137	!
1138	!-- Read global attribute
1139	IF ( global ) THEN
1140	CALL get_attribute( id_mod, search_string, val, global )
1141	!
1142	!-- Read variable attribute
1143	ELSE
1144	CALL get_attribute( id_mod, search_string, val, global, variable_name )
1145	ENDIF
1146	!
1147	!-- Close input file
1148	IF ( openclose == 'close' ) CALL close_input_file( id_mod )
1149	#endif
1150
1151	END SUBROUTINE netcdf_data_input_att_string
1152
1153	!------------------------------------------------------------------------------!
1154	! Description:
1155	! ------------
1156	!> Read a global integer attribute
1157	!------------------------------------------------------------------------------!
1158	SUBROUTINE netcdf_data_input_att_int( val, search_string, id_mod, &
1159	input_file, global, openclose, &
1160	variable_name )
1161
1162	IMPLICIT NONE
1163
1164	CHARACTER(LEN=*) :: search_string !< name of the attribue
1165
1166	CHARACTER(LEN=*) :: input_file !< name of input file
1167	CHARACTER(LEN=*) :: openclose !< string indicating whether NetCDF needs to be opend or closed
1168	CHARACTER(LEN=*) :: variable_name !< string indicating whether NetCDF needs to be opend or closed
1169
1170	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1171	INTEGER(iwp) :: val !< value of the attribute
1172
1173	LOGICAL :: global !< flag indicating a global or a variable's attribute
1174
1175	#if defined ( __netcdf )
1176	!
1177	!-- Open file in read-only mode
1178	IF ( openclose == 'open' ) THEN
1179	CALL open_read_file( TRIM( input_file ) // TRIM( coupling_char ), &
1180	id_mod )
1181	ENDIF
1182	!
1183	!-- Read global attribute
1184	IF ( global ) THEN
1185	CALL get_attribute( id_mod, search_string, val, global )
1186	!
1187	!-- Read variable attribute
1188	ELSE
1189	CALL get_attribute( id_mod, search_string, val, global, variable_name )
1190	ENDIF
1191	!
1192	!-- Finally, close input file
1193	IF ( openclose == 'close' ) CALL close_input_file( id_mod )
1194	#endif
1195
1196	END SUBROUTINE netcdf_data_input_att_int
1197
1198	!------------------------------------------------------------------------------!
1199	! Description:
1200	! ------------
1201	!> Read a global real attribute
1202	!------------------------------------------------------------------------------!
1203	SUBROUTINE netcdf_data_input_att_real( val, search_string, id_mod, &
1204	input_file, global, openclose, &
1205	variable_name )
1206
1207	IMPLICIT NONE
1208
1209	CHARACTER(LEN=*) :: search_string !< name of the attribue
1210
1211	CHARACTER(LEN=*) :: input_file !< name of input file
1212	CHARACTER(LEN=*) :: openclose !< string indicating whether NetCDF needs to be opend or closed
1213	CHARACTER(LEN=*) :: variable_name !< string indicating whether NetCDF needs to be opend or closed
1214
1215	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1216
1217	LOGICAL :: global !< flag indicating a global or a variable's attribute
1218
1219	REAL(wp) :: val !< value of the attribute
1220
1221	#if defined ( __netcdf )
1222	!
1223	!-- Open file in read-only mode
1224	IF ( openclose == 'open' ) THEN
1225	CALL open_read_file( TRIM( input_file ) // TRIM( coupling_char ), &
1226	id_mod )
1227	ENDIF
1228	!
1229	!-- Read global attribute
1230	IF ( global ) THEN
1231	CALL get_attribute( id_mod, search_string, val, global )
1232	!
1233	!-- Read variable attribute
1234	ELSE
1235	CALL get_attribute( id_mod, search_string, val, global, variable_name )
1236	ENDIF
1237	!
1238	!-- Finally, close input file
1239	IF ( openclose == 'close' ) CALL close_input_file( id_mod )
1240	#endif
1241
1242	END SUBROUTINE netcdf_data_input_att_real
1243
1244	!------------------------------------------------------------------------------!
1245	! Description:
1246	! ------------
1247	!> Reads Chemistry NETCDF Input data, such as emission values, emission species, etc. .
1248	!------------------------------------------------------------------------------!
1249	SUBROUTINE netcdf_data_input_chemistry_data(emt_att,emt)
1250
1251	USE chem_modules, &
1252	ONLY: do_emis, mode_emis, time_fac_type, &
1253	surface_csflux_name
1254
1255	USE control_parameters, &
1256	ONLY: message_string
1257
1258	USE indices, &
1259	ONLY: nz, nx, ny, nxl, nxr, nys, nyn, nzb, nzt
1260
1261	IMPLICIT NONE
1262
1263	TYPE(chem_emis_att_type), INTENT(INOUT) :: emt_att
1264	TYPE(chem_emis_val_type), ALLOCATABLE, DIMENSION(:), INTENT(INOUT) :: emt
1265
1266	CHARACTER (LEN=80) :: units='' !< units of chemistry inputs
1267
1268	INTEGER(iwp) :: ispec !< index for number of emission species in input
1269
1270	INTEGER(iwp), ALLOCATABLE, DIMENSION(:) :: dum_var !< value of variable read from netcdf input
1271	INTEGER(iwp) :: errno !< error number NF90_???? function
1272	INTEGER(iwp) :: id_var !< variable id
1273	! INTEGER(iwp) :: id_emis !< NetCDF id of input file
1274	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
1275	INTEGER(iwp) :: len_dims,len_dims_2 !< Length of dimensions
1276
1277	INTEGER(iwp) :: max_string_length=25 !< Variable for the maximum length of a string
1278
1279	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names !< Name of Variables
1280
1281	REAL(wp), ALLOCATABLE, DIMENSION(:,:,:) :: dum_var_3d !< variable for storing temporary data of 3-dimensional
1282	! variables read from netcdf for chemistry emissions
1283
1284	REAL(wp), ALLOCATABLE, DIMENSION(:,:,:,:) :: dum_var_4d !< variable for storing temporary data of 5-dimensional
1285	!< variables read from netcdf for chemistry emissions
1286	!--
1287	!> Start the processing of the data
1288	CALL location_message( 'starting allocation of chemistry emissions arrays', .FALSE. )
1289
1290	!> Parameterized mode of the emissions
1291	IF (TRIM(mode_emis)=="PARAMETERIZED" .OR. TRIM(mode_emis)=="parameterized") THEN
1292
1293	ispec=1
1294	emt_att%nspec=0
1295
1296	!number of species
1297	DO WHILE (TRIM( surface_csflux_name( ispec ) ) /= 'novalue' )
1298
1299	emt_att%nspec=emt_att%nspec+1
1300	ispec=ispec+1
1301
1302	ENDDO
1303
1304	!-- allocate emission values data type arrays
1305	ALLOCATE(emt(emt_att%nspec))
1306
1307	!-- Read EMISSION SPECIES NAMES
1308
1309	!Assign values
1310	ALLOCATE(emt_att%species_name(emt_att%nspec))
1311
1312	DO ispec=1,emt_att%nspec
1313	emt_att%species_name(ispec) = TRIM(surface_csflux_name(ispec))
1314	ENDDO
1315
1316
1317	!> DEFAULT AND PRE-PROCESSED MODE
1318	ELSE
1319
1320	#if defined ( __netcdf )
1321	IF ( .NOT. input_pids_chem ) RETURN
1322
1323	!-- Open file in read-only mode
1324	CALL open_read_file( TRIM( input_file_chem ) // &
1325	TRIM( coupling_char ), id_emis )
1326	!-- inquire number of variables
1327	CALL inquire_num_variables( id_emis, num_vars )
1328
1329	!-- Get General Dimension Lengths: only number of species and number of categories.
1330	! the other dimensions depend on the mode of the emissions or on the presence of specific components
1331	!nspecies
1332	CALL netcdf_data_input_get_dimension_length( id_emis, emt_att%nspec, 'nspecies' )
1333
1334
1335	!-- Allocate emission values data type arrays
1336	ALLOCATE(emt(1:emt_att%nspec))
1337
1338
1339	!-- Read EMISSION SPECIES NAMES
1340	!Allocate Arrays
1341	ALLOCATE(emt_att%species_name(emt_att%nspec))
1342
1343	!Call get Variable
1344	CALL get_variable( id_emis, 'emission_name', string_values, emt_att%nspec )
1345	emt_att%species_name=string_values
1346	! If allocated, Deallocate var_string, an array only used for reading-in strings
1347	IF (ALLOCATED(string_values)) DEALLOCATE(string_values)
1348
1349	!-- Read EMISSION SPECIES INDEX
1350	!Allocate Arrays
1351	ALLOCATE(emt_att%species_index(emt_att%nspec))
1352	!Call get Variable
1353	CALL get_variable( id_emis, 'emission_index', emt_att%species_index )
1354
1355
1356	!-- Now the routine has to distinguish between DEFAULT and PRE-PROCESSED chemistry emission modes
1357
1358	IF (TRIM(mode_emis)=="DEFAULT" .OR. TRIM(mode_emis)=="default") THEN
1359
1360	!number of categories
1361	CALL netcdf_data_input_get_dimension_length( id_emis, emt_att%ncat, 'ncat' )
1362
1363	!-- Read EMISSION CATEGORIES INDEX
1364	!Allocate Arrays
1365	ALLOCATE(emt_att%cat_index(emt_att%ncat))
1366	!Call get Variable
1367	CALL get_variable( id_emis, 'emission_cat_index', emt_att%cat_index )
1368
1369
1370	DO ispec=1,emt_att%nspec
1371	!-- EMISSION_VOC_NAME (1-DIMENSIONAL)
1372	IF (TRIM(emt_att%species_name(ispec))=="VOC" .OR. TRIM(emt_att%species_name(ispec))=="voc") THEN
1373	!Allocate Array
1374	CALL netcdf_data_input_get_dimension_length( id_emis, emt_att%nvoc, 'nvoc' )
1375	ALLOCATE(emt_att%voc_name(1:emt_att%nvoc))
1376	!Read-in Variable
1377	CALL get_variable( id_emis,"emission_voc_name",string_values, emt_att%nvoc)
1378	emt_att%voc_name=string_values
1379	IF (ALLOCATED(string_values)) DEALLOCATE(string_values)
1380
1381	!-- COMPOSITION VOC (2-DIMENSIONAL)
1382	!Allocate Array
1383	ALLOCATE(emt_att%voc_comp(1:emt_att%ncat,1:emt_att%nvoc))
1384	!Read-in Variable
1385	! CALL get_variable(id_emis,"composition_voc",emt%voc_comp,1,1,emt%ncat,emt%nvoc)
1386	CALL get_variable(id_emis,"composition_voc",emt_att%voc_comp,1,emt_att%ncat,1,emt_att%nvoc)
1387	ENDIF
1388
1389	!-- EMISSION_PM_NAME (1-DIMENSIONAL)
1390	IF (TRIM(emt_att%species_name(ispec))=="PM" .OR. TRIM(emt_att%species_name(ispec))=="pm") THEN
1391	CALL netcdf_data_input_get_dimension_length( id_emis, emt_att%npm, 'npm' )
1392	ALLOCATE(emt_att%pm_name(1:emt_att%npm))
1393	!Read-in Variable
1394	CALL get_variable( id_emis,"pm_name",string_values, emt_att%npm)
1395	emt_att%pm_name=string_values
1396	IF (ALLOCATED(string_values)) DEALLOCATE(string_values)
1397
1398	!-- COMPOSITION PM (3-DIMENSIONAL)
1399	!Allocate
1400	len_dims=3 !> number of PMs: PM1, PM2.5 and PM10
1401	ALLOCATE(emt_att%pm_comp(1:emt_att%ncat,1:emt_att%npm,1:len_dims))
1402	!Read-in Variable
1403	CALL get_variable(id_emis,"composition_pm",emt_att%pm_comp,1,emt_att%ncat,1,emt_att%npm,1,len_dims)
1404	ENDIF
1405
1406	!-- COMPOSITION_NOX (2-DIMENSIONAL)
1407	IF (TRIM(emt_att%species_name(ispec))=="NOx" .OR. TRIM(emt_att%species_name(ispec))=="nox") THEN
1408	!Allocate array
1409	ALLOCATE(emt_att%nox_comp(1:emt_att%ncat,1:emt_att%nnox))
1410	!Read-in Variable
1411	CALL get_variable(id_emis,"composition_nox",emt_att%nox_comp,1,emt_att%ncat,1,emt_att%nnox)
1412	ENDIF
1413
1414	!-- COMPOSITION-SOX (2-DIMENSIONAL)
1415	IF (TRIM(emt_att%species_name(ispec))=="SOx" .OR. TRIM(emt_att%species_name(ispec))=="sox") THEN
1416	ALLOCATE(emt_att%sox_comp(1:emt_att%ncat,1:emt_att%nsox))
1417	!Read-in Variable
1418	CALL get_variable(id_emis,"composition_sox",emt_att%sox_comp,1,emt_att%ncat,1,emt_att%nsox)
1419	ENDIF
1420	ENDDO !>ispec
1421
1422	!-- For reading the emission time factors, the distinction between HOUR and MDH data is necessary
1423
1424	!-- EMISSION_TIME_SCALING_FACTORS
1425	!-- HOUR
1426	IF (TRIM(time_fac_type)=="HOUR" .OR. TRIM(time_fac_type)=="hour") THEN
1427	!-- Allocate Array
1428	CALL netcdf_data_input_get_dimension_length( id_emis, emt_att%nhoursyear, 'nhoursyear' )
1429	ALLOCATE(emt_att%hourly_emis_time_factor(1:emt_att%ncat,1:emt_att%nhoursyear))
1430	!Read-in Variable
1431	CALL get_variable(id_emis,"emission_time_factors",emt_att%hourly_emis_time_factor,1, &
1432	emt_att%ncat,1,emt_att%nhoursyear)
1433
1434	!-- MDH
1435	ELSE IF (TRIM(time_fac_type) == "MDH" .OR. TRIM(time_fac_type) == "mdh") THEN
1436	!-- Allocate Array
1437	CALL netcdf_data_input_get_dimension_length( id_emis, emt_att%nmonthdayhour, 'nmonthdayhour' )
1438	ALLOCATE(emt_att%mdh_emis_time_factor(1:emt_att%ncat,1:emt_att%nmonthdayhour))
1439	!-- Read-in Variable
1440	CALL get_variable(id_emis,"emission_time_factors",emt_att%mdh_emis_time_factor,1, &
1441	emt_att%ncat,1,emt_att%nmonthdayhour)
1442
1443	ELSE
1444
1445	message_string = 'We are in the DEFAULT chemistry emissions mode: ' // &
1446	' !no time-factor type specified!' // &
1447	'Please, specify the value of time_fac_type:' // &
1448	' either "MDH" or "HOUR"'
1449	CALL message( 'netcdf_data_input_chemistry_data', 'CM0200', 2, 2, 0, 6, 0 )
1450
1451
1452	ENDIF
1453
1454	!-- Finally read-in the emission values and their units (DEFAULT mode)
1455
1456	DO ispec=1,emt_att%nspec
1457
1458	IF ( .NOT. ALLOCATED( emt(ispec)%default_emission_data ) ) &
1459	ALLOCATE(emt(ispec)%default_emission_data(1:emt_att%ncat,1:ny+1,1:nx+1))
1460
1461	ALLOCATE(dum_var_3d(1:emt_att%ncat,nys+1:nyn+1,nxl+1:nxr+1))
1462
1463	CALL get_variable(id_emis,"emission_values",dum_var_3d,ispec,1,emt_att%ncat,nys,nyn,nxl,nxr)
1464
1465	emt(ispec)%default_emission_data(:,nys+1:nyn+1,nxl+1:nxr+1) = &
1466	dum_var_3d(1:emt_att%ncat,nys+1:nyn+1,nxl+1:nxr+1)
1467
1468	DEALLOCATE (dum_var_3d)
1469
1470	ENDDO
1471
1472	!-- UNITS
1473	CALL get_attribute(id_emis,"units",emt_att%units,.FALSE.,"emission_values")
1474
1475
1476	!-- PRE-PROCESSED MODE --
1477
1478	ELSE IF (TRIM(mode_emis)=="PRE-PROCESSED" .OR. TRIM(mode_emis)=="pre-processed") THEN
1479	!-- In the PRE-PROCESSED mode, only the VOC names, the VOC_composition, the emission values and their units remain to be read at this point
1480
1481	DO ispec=1,emt_att%nspec
1482
1483	!-- EMISSION_VOC_NAME (1-DIMENSIONAL)
1484	IF (TRIM(emt_att%species_name(ispec))=="VOC" .OR. TRIM(emt_att%species_name(ispec))=="voc") THEN
1485	!Allocate Array
1486	CALL netcdf_data_input_get_dimension_length( id_emis, emt_att%nvoc, 'nvoc' )
1487	ALLOCATE(emt_att%voc_name(1:emt_att%nvoc))
1488	!Read-in Variable
1489	CALL get_variable( id_emis,"emission_voc_name",string_values, emt_att%nvoc)
1490	emt_att%voc_name=string_values
1491	IF (ALLOCATED(string_values)) DEALLOCATE(string_values)
1492
1493	!-- COMPOSITION VOC (2-DIMENSIONAL)
1494	!Allocate Array
1495	ALLOCATE(emt_att%voc_comp(1:emt_att%ncat,1:emt_att%nvoc))
1496	!Read-in Variable
1497	CALL get_variable(id_emis,"composition_voc",emt_att%voc_comp,1,emt_att%ncat,1,emt_att%nvoc)
1498	ENDIF
1499
1500	ENDDO !> ispec
1501
1502	!-- EMISSION_VALUES (4-DIMENSIONAL)
1503	!Calculate temporal dimension length
1504	CALL netcdf_data_input_get_dimension_length( id_emis, emt_att%dt_emission, 'time' )
1505
1506
1507	DO ispec=1,emt_att%nspec
1508
1509	!Allocation for the entire domain has to be done only for the first processor between all the subdomains
1510	IF ( .NOT. ALLOCATED( emt(ispec)%preproc_emission_data ) ) &
1511	ALLOCATE(emt(ispec)%preproc_emission_data(emt_att%dt_emission,1,1:ny+1,1:nx+1))
1512
1513	!> allocate variable where to pass emission values read from netcdf
1514	ALLOCATE(dum_var_4d(1:emt_att%dt_emission,1,nys+1:nyn+1,nxl+1:nxr+1))
1515
1516	!Read-in Variable
1517	CALL get_variable(id_emis,"emission_values",dum_var_4d,ispec,1,emt_att%dt_emission,1,1,nys,nyn,nxl,nxr)
1518
1519
1520	emt(ispec)%preproc_emission_data(:,1,nys+1:nyn+1,nxl+1:nxr+1) = &
1521	dum_var_4d(1:emt_att%dt_emission,1,nys+1:nyn+1,nxl+1:nxr+1)
1522
1523	DEALLOCATE ( dum_var_4d )
1524
1525	ENDDO
1526
1527	!-- UNITS
1528	CALL get_attribute(id_emis,"units",emt_att%units,.FALSE.,"emission_values")
1529
1530	ENDIF
1531
1532	CALL close_input_file( id_emis )
1533
1534	#endif
1535	ENDIF
1536
1537	END SUBROUTINE netcdf_data_input_chemistry_data
1538
1539	!------------------------------------------------------------------------------!
1540	! Description:
1541	! ------------
1542	!> Reads surface classification data, such as vegetation and soil type, etc. .
1543	!------------------------------------------------------------------------------!
1544	SUBROUTINE netcdf_data_input_surface_data
1545
1546	USE control_parameters, &
1547	ONLY: bc_lr_cyc, bc_ns_cyc, land_surface, plant_canopy, &
1548	urban_surface
1549
1550	USE indices, &
1551	ONLY: nbgp, nx, nxl, nxr,ny, nyn, nys
1552
1553
1554	IMPLICIT NONE
1555
1556	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names !< variable names in static input file
1557
1558	INTEGER(iwp) :: id_surf !< NetCDF id of input file
1559	INTEGER(iwp) :: k !< running index along z-direction
1560	INTEGER(iwp) :: k2 !< running index
1561	INTEGER(iwp) :: num_vars !< number of variables in input file
1562	INTEGER(iwp) :: nz_soil !< number of soil layers in file
1563
1564	!
1565	!-- If not static input file is available, skip this routine
1566	IF ( .NOT. input_pids_static ) RETURN
1567	!
1568	!-- Measure CPU time
1569	CALL cpu_log( log_point_s(82), 'NetCDF input', 'start' )
1570	!
1571	!-- Read plant canopy variables.
1572	IF ( plant_canopy ) THEN
1573	#if defined ( __netcdf )
1574	!
1575	!-- Open file in read-only mode
1576	CALL open_read_file( TRIM( input_file_static ) // &
1577	TRIM( coupling_char ) , id_surf )
1578	!
1579	!-- At first, inquire all variable names.
1580	!-- This will be used to check whether an optional input variable
1581	!-- exist or not.
1582	CALL inquire_num_variables( id_surf, num_vars )
1583
1584	ALLOCATE( var_names(1:num_vars) )
1585	CALL inquire_variable_names( id_surf, var_names )
1586
1587	!
1588	!-- Read leaf area density - resolved vegetation
1589	IF ( check_existence( var_names, 'lad' ) ) THEN
1590	leaf_area_density_f%from_file = .TRUE.
1591	CALL get_attribute( id_surf, char_fill, &
1592	leaf_area_density_f%fill, &
1593	.FALSE., 'lad' )
1594	!
1595	!-- Inquire number of vertical vegetation layer
1596	CALL netcdf_data_input_get_dimension_length( id_surf, &
1597	leaf_area_density_f%nz, &
1598	'zlad' )
1599	!
1600	!-- Allocate variable for leaf-area density
1601	ALLOCATE( leaf_area_density_f%var( 0:leaf_area_density_f%nz-1, &
1602	nys:nyn,nxl:nxr) )
1603
1604	CALL get_variable( id_surf, 'lad', leaf_area_density_f%var, &
1605	nxl, nxr, nys, nyn, &
1606	0, leaf_area_density_f%nz-1 )
1607
1608	ELSE
1609	leaf_area_density_f%from_file = .FALSE.
1610	ENDIF
1611
1612	!
1613	!-- Read basal area density - resolved vegetation
1614	IF ( check_existence( var_names, 'bad' ) ) THEN
1615	basal_area_density_f%from_file = .TRUE.
1616	CALL get_attribute( id_surf, char_fill, &
1617	basal_area_density_f%fill, &
1618	.FALSE., 'bad' )
1619	!
1620	!-- Inquire number of vertical vegetation layer
1621	CALL netcdf_data_input_get_dimension_length( id_surf, &
1622	basal_area_density_f%nz, &
1623	'zlad' )
1624	!
1625	!-- Allocate variable
1626	ALLOCATE( basal_area_density_f%var(0:basal_area_density_f%nz-1, &
1627	nys:nyn,nxl:nxr) )
1628
1629	CALL get_variable( id_surf, 'bad', basal_area_density_f%var, &
1630	nxl, nxr, nys, nyn, &
1631	0, basal_area_density_f%nz-1 )
1632	ELSE
1633	basal_area_density_f%from_file = .FALSE.
1634	ENDIF
1635
1636	!
1637	!-- Read root area density - resolved vegetation
1638	IF ( check_existence( var_names, 'root_area_dens_r' ) ) THEN
1639	root_area_density_lad_f%from_file = .TRUE.
1640	CALL get_attribute( id_surf, char_fill, &
1641	root_area_density_lad_f%fill, &
1642	.FALSE., 'root_area_dens_r' )
1643	!
1644	!-- Inquire number of vertical soil layers
1645	CALL netcdf_data_input_get_dimension_length( id_surf, &
1646	root_area_density_lad_f%nz, &
1647	'zsoil' )
1648	!
1649	!-- Allocate variable
1650	ALLOCATE( root_area_density_lad_f%var &
1651	(0:root_area_density_lad_f%nz-1, &
1652	nys:nyn,nxl:nxr) )
1653
1654	CALL get_variable( id_surf, 'root_area_dens_r', &
1655	root_area_density_lad_f%var, &
1656	nxl, nxr, nys, nyn, &
1657	0, root_area_density_lad_f%nz-1 )
1658	ELSE
1659	root_area_density_lad_f%from_file = .FALSE.
1660	ENDIF
1661	!
1662	!-- Finally, close input file
1663	CALL close_input_file( id_surf )
1664	#endif
1665	ENDIF
1666	!
1667	!-- Deallocate variable list. Will be re-allocated in case further
1668	!-- variables are read from file.
1669	IF ( ALLOCATED( var_names ) ) DEALLOCATE( var_names )
1670	!
1671	!-- Skip the following if no land-surface or urban-surface module are
1672	!-- applied. This case, no one of the following variables is used anyway.
1673	IF ( .NOT. land_surface .AND. .NOT. urban_surface ) RETURN
1674
1675	#if defined ( __netcdf )
1676	!
1677	!-- Open file in read-only mode
1678	CALL open_read_file( TRIM( input_file_static ) // &
1679	TRIM( coupling_char ) , id_surf )
1680	!
1681	!-- Inquire all variable names.
1682	!-- This will be used to check whether an optional input variable exist
1683	!-- or not.
1684	CALL inquire_num_variables( id_surf, num_vars )
1685
1686	ALLOCATE( var_names(1:num_vars) )
1687	CALL inquire_variable_names( id_surf, var_names )
1688	!
1689	!-- Read vegetation type and required attributes
1690	IF ( check_existence( var_names, 'vegetation_type' ) ) THEN
1691	vegetation_type_f%from_file = .TRUE.
1692	CALL get_attribute( id_surf, char_fill, &
1693	vegetation_type_f%fill, &
1694	.FALSE., 'vegetation_type' )
1695
1696	ALLOCATE ( vegetation_type_f%var(nys:nyn,nxl:nxr) )
1697
1698	CALL get_variable( id_surf, 'vegetation_type', &
1699	vegetation_type_f%var, nxl, nxr, nys, nyn )
1700	ELSE
1701	vegetation_type_f%from_file = .FALSE.
1702	ENDIF
1703
1704	!
1705	!-- Read soil type and required attributes
1706	IF ( check_existence( var_names, 'soil_type' ) ) THEN
1707	soil_type_f%from_file = .TRUE.
1708	!
1709	!-- Note, lod is currently not on file; skip for the moment
1710	! CALL get_attribute( id_surf, char_lod, &
1711	! soil_type_f%lod, &
1712	! .FALSE., 'soil_type' )
1713	CALL get_attribute( id_surf, char_fill, &
1714	soil_type_f%fill, &
1715	.FALSE., 'soil_type' )
1716
1717	IF ( soil_type_f%lod == 1 ) THEN
1718
1719	ALLOCATE ( soil_type_f%var_2d(nys:nyn,nxl:nxr) )
1720
1721	CALL get_variable( id_surf, 'soil_type', soil_type_f%var_2d, &
1722	nxl, nxr, nys, nyn )
1723
1724	ELSEIF ( soil_type_f%lod == 2 ) THEN
1725	!
1726	!-- Obtain number of soil layers from file.
1727	CALL netcdf_data_input_get_dimension_length( id_surf, nz_soil, &
1728	'zsoil' )
1729
1730	ALLOCATE ( soil_type_f%var_3d(0:nz_soil,nys:nyn,nxl:nxr) )
1731
1732	CALL get_variable( id_surf, 'soil_type', soil_type_f%var_3d, &
1733	nxl, nxr, nys, nyn, 0, nz_soil )
1734
1735	ENDIF
1736	ELSE
1737	soil_type_f%from_file = .FALSE.
1738	ENDIF
1739
1740	!
1741	!-- Read pavement type and required attributes
1742	IF ( check_existence( var_names, 'pavement_type' ) ) THEN
1743	pavement_type_f%from_file = .TRUE.
1744	CALL get_attribute( id_surf, char_fill, &
1745	pavement_type_f%fill, .FALSE., &
1746	'pavement_type' )
1747
1748	ALLOCATE ( pavement_type_f%var(nys:nyn,nxl:nxr) )
1749
1750	CALL get_variable( id_surf, 'pavement_type', pavement_type_f%var, &
1751	nxl, nxr, nys, nyn )
1752	ELSE
1753	pavement_type_f%from_file = .FALSE.
1754	ENDIF
1755
1756	!
1757	!-- Read water type and required attributes
1758	IF ( check_existence( var_names, 'water_type' ) ) THEN
1759	water_type_f%from_file = .TRUE.
1760	CALL get_attribute( id_surf, char_fill, water_type_f%fill, &
1761	.FALSE., 'water_type' )
1762
1763	ALLOCATE ( water_type_f%var(nys:nyn,nxl:nxr) )
1764
1765	CALL get_variable( id_surf, 'water_type', water_type_f%var, &
1766	nxl, nxr, nys, nyn )
1767
1768	ELSE
1769	water_type_f%from_file = .FALSE.
1770	ENDIF
1771	!
1772	!-- Read relative surface fractions of vegetation, pavement and water.
1773	IF ( check_existence( var_names, 'surface_fraction' ) ) THEN
1774	surface_fraction_f%from_file = .TRUE.
1775	CALL get_attribute( id_surf, char_fill, &
1776	surface_fraction_f%fill, &
1777	.FALSE., 'surface_fraction' )
1778	!
1779	!-- Inquire number of surface fractions
1780	CALL netcdf_data_input_get_dimension_length( id_surf, &
1781	surface_fraction_f%nf, &
1782	'nsurface_fraction' )
1783	!
1784	!-- Allocate dimension array and input array for surface fractions
1785	ALLOCATE( surface_fraction_f%nfracs(0:surface_fraction_f%nf-1) )
1786	ALLOCATE( surface_fraction_f%frac(0:surface_fraction_f%nf-1, &
1787	nys:nyn,nxl:nxr) )
1788	!
1789	!-- Get dimension of surface fractions
1790	CALL get_variable( id_surf, 'nsurface_fraction', &
1791	surface_fraction_f%nfracs )
1792	!
1793	!-- Read surface fractions
1794	CALL get_variable( id_surf, 'surface_fraction', &
1795	surface_fraction_f%frac, nxl, nxr, nys, nyn, &
1796	0, surface_fraction_f%nf-1 )
1797	ELSE
1798	surface_fraction_f%from_file = .FALSE.
1799	ENDIF
1800	!
1801	!-- Read building parameters and related information
1802	IF ( check_existence( var_names, 'building_pars' ) ) THEN
1803	building_pars_f%from_file = .TRUE.
1804	CALL get_attribute( id_surf, char_fill, &
1805	building_pars_f%fill, &
1806	.FALSE., 'building_pars' )
1807	!
1808	!-- Inquire number of building parameters
1809	CALL netcdf_data_input_get_dimension_length( id_surf, &
1810	building_pars_f%np, &
1811	'nbuilding_pars' )
1812	!
1813	!-- Allocate dimension array and input array for building parameters
1814	ALLOCATE( building_pars_f%pars(0:building_pars_f%np-1) )
1815	ALLOCATE( building_pars_f%pars_xy(0:building_pars_f%np-1, &
1816	nys:nyn,nxl:nxr) )
1817	!
1818	!-- Get dimension of building parameters
1819	CALL get_variable( id_surf, 'nbuilding_pars', &
1820	building_pars_f%pars )
1821	!
1822	!-- Read building_pars
1823	CALL get_variable( id_surf, 'building_pars', &
1824	building_pars_f%pars_xy, nxl, nxr, nys, nyn, &
1825	0, building_pars_f%np-1 )
1826	ELSE
1827	building_pars_f%from_file = .FALSE.
1828	ENDIF
1829
1830	!
1831	!-- Read albedo type and required attributes
1832	IF ( check_existence( var_names, 'albedo_type' ) ) THEN
1833	albedo_type_f%from_file = .TRUE.
1834	CALL get_attribute( id_surf, char_fill, albedo_type_f%fill, &
1835	.FALSE., 'albedo_type' )
1836
1837	ALLOCATE ( albedo_type_f%var(nys:nyn,nxl:nxr) )
1838
1839	CALL get_variable( id_surf, 'albedo_type', albedo_type_f%var, &
1840	nxl, nxr, nys, nyn )
1841	ELSE
1842	albedo_type_f%from_file = .FALSE.
1843	ENDIF
1844	!
1845	!-- Read albedo parameters and related information
1846	IF ( check_existence( var_names, 'albedo_pars' ) ) THEN
1847	albedo_pars_f%from_file = .TRUE.
1848	CALL get_attribute( id_surf, char_fill, albedo_pars_f%fill, &
1849	.FALSE., 'albedo_pars' )
1850	!
1851	!-- Inquire number of albedo parameters
1852	CALL netcdf_data_input_get_dimension_length( id_surf, &
1853	albedo_pars_f%np, &
1854	'nalbedo_pars' )
1855	!
1856	!-- Allocate dimension array and input array for albedo parameters
1857	ALLOCATE( albedo_pars_f%pars(0:albedo_pars_f%np-1) )
1858	ALLOCATE( albedo_pars_f%pars_xy(0:albedo_pars_f%np-1, &
1859	nys:nyn,nxl:nxr) )
1860	!
1861	!-- Get dimension of albedo parameters
1862	CALL get_variable( id_surf, 'nalbedo_pars', albedo_pars_f%pars )
1863
1864	CALL get_variable( id_surf, 'albedo_pars', albedo_pars_f%pars_xy, &
1865	nxl, nxr, nys, nyn, &
1866	0, albedo_pars_f%np-1 )
1867	ELSE
1868	albedo_pars_f%from_file = .FALSE.
1869	ENDIF
1870
1871	!
1872	!-- Read pavement parameters and related information
1873	IF ( check_existence( var_names, 'pavement_pars' ) ) THEN
1874	pavement_pars_f%from_file = .TRUE.
1875	CALL get_attribute( id_surf, char_fill, &
1876	pavement_pars_f%fill, &
1877	.FALSE., 'pavement_pars' )
1878	!
1879	!-- Inquire number of pavement parameters
1880	CALL netcdf_data_input_get_dimension_length( id_surf, &
1881	pavement_pars_f%np, &
1882	'npavement_pars' )
1883	!
1884	!-- Allocate dimension array and input array for pavement parameters
1885	ALLOCATE( pavement_pars_f%pars(0:pavement_pars_f%np-1) )
1886	ALLOCATE( pavement_pars_f%pars_xy(0:pavement_pars_f%np-1, &
1887	nys:nyn,nxl:nxr) )
1888	!
1889	!-- Get dimension of pavement parameters
1890	CALL get_variable( id_surf, 'npavement_pars', pavement_pars_f%pars )
1891
1892	CALL get_variable( id_surf, 'pavement_pars', pavement_pars_f%pars_xy,&
1893	nxl, nxr, nys, nyn, &
1894	0, pavement_pars_f%np-1 )
1895	ELSE
1896	pavement_pars_f%from_file = .FALSE.
1897	ENDIF
1898
1899	!
1900	!-- Read pavement subsurface parameters and related information
1901	IF ( check_existence( var_names, 'pavement_subsurface_pars' ) ) &
1902	THEN
1903	pavement_subsurface_pars_f%from_file = .TRUE.
1904	CALL get_attribute( id_surf, char_fill, &
1905	pavement_subsurface_pars_f%fill, &
1906	.FALSE., 'pavement_subsurface_pars' )
1907	!
1908	!-- Inquire number of parameters
1909	CALL netcdf_data_input_get_dimension_length( id_surf, &
1910	pavement_subsurface_pars_f%np, &
1911	'npavement_subsurface_pars' )
1912	!
1913	!-- Inquire number of soil layers
1914	CALL netcdf_data_input_get_dimension_length( id_surf, &
1915	pavement_subsurface_pars_f%nz, &
1916	'zsoil' )
1917	!
1918	!-- Allocate dimension array and input array for pavement parameters
1919	ALLOCATE( pavement_subsurface_pars_f%pars &
1920	(0:pavement_subsurface_pars_f%np-1) )
1921	ALLOCATE( pavement_subsurface_pars_f%pars_xyz &
1922	(0:pavement_subsurface_pars_f%np-1, &
1923	0:pavement_subsurface_pars_f%nz-1, &
1924	nys:nyn,nxl:nxr) )
1925	!
1926	!-- Get dimension of pavement parameters
1927	CALL get_variable( id_surf, 'npavement_subsurface_pars', &
1928	pavement_subsurface_pars_f%pars )
1929
1930	CALL get_variable( id_surf, 'pavement_subsurface_pars', &
1931	pavement_subsurface_pars_f%pars_xyz, &
1932	nxl, nxr, nys, nyn, &
1933	0, pavement_subsurface_pars_f%nz-1, &
1934	0, pavement_subsurface_pars_f%np-1 )
1935	ELSE
1936	pavement_subsurface_pars_f%from_file = .FALSE.
1937	ENDIF
1938
1939
1940	!
1941	!-- Read vegetation parameters and related information
1942	IF ( check_existence( var_names, 'vegetation_pars' ) ) THEN
1943	vegetation_pars_f%from_file = .TRUE.
1944	CALL get_attribute( id_surf, char_fill, &
1945	vegetation_pars_f%fill, &
1946	.FALSE., 'vegetation_pars' )
1947	!
1948	!-- Inquire number of vegetation parameters
1949	CALL netcdf_data_input_get_dimension_length( id_surf, &
1950	vegetation_pars_f%np, &
1951	'nvegetation_pars' )
1952	!
1953	!-- Allocate dimension array and input array for surface fractions
1954	ALLOCATE( vegetation_pars_f%pars(0:vegetation_pars_f%np-1) )
1955	ALLOCATE( vegetation_pars_f%pars_xy(0:vegetation_pars_f%np-1, &
1956	nys:nyn,nxl:nxr) )
1957	!
1958	!-- Get dimension of the parameters
1959	CALL get_variable( id_surf, 'nvegetation_pars', &
1960	vegetation_pars_f%pars )
1961
1962	CALL get_variable( id_surf, 'vegetation_pars', &
1963	vegetation_pars_f%pars_xy, nxl, nxr, nys, nyn, &
1964	0, vegetation_pars_f%np-1 )
1965	ELSE
1966	vegetation_pars_f%from_file = .FALSE.
1967	ENDIF
1968
1969	!
1970	!-- Read root parameters/distribution and related information
1971	IF ( check_existence( var_names, 'soil_pars' ) ) THEN
1972	soil_pars_f%from_file = .TRUE.
1973	CALL get_attribute( id_surf, char_fill, &
1974	soil_pars_f%fill, &
1975	.FALSE., 'soil_pars' )
1976
1977	CALL get_attribute( id_surf, char_lod, &
1978	soil_pars_f%lod, &
1979	.FALSE., 'soil_pars' )
1980
1981	!
1982	!-- Inquire number of soil parameters
1983	CALL netcdf_data_input_get_dimension_length( id_surf, &
1984	soil_pars_f%np, &
1985	'nsoil_pars' )
1986	!
1987	!-- Read parameters array
1988	ALLOCATE( soil_pars_f%pars(0:soil_pars_f%np-1) )
1989	CALL get_variable( id_surf, 'nsoil_pars', soil_pars_f%pars )
1990
1991	!
1992	!-- In case of level of detail 2, also inquire number of vertical
1993	!-- soil layers, allocate memory and read the respective dimension
1994	IF ( soil_pars_f%lod == 2 ) THEN
1995	CALL netcdf_data_input_get_dimension_length( id_surf, &
1996	soil_pars_f%nz, &
1997	'zsoil' )
1998
1999	ALLOCATE( soil_pars_f%layers(0:soil_pars_f%nz-1) )
2000	CALL get_variable( id_surf, 'zsoil', soil_pars_f%layers )
2001
2002	ENDIF
2003
2004	!
2005	!-- Read soil parameters, depending on level of detail
2006	IF ( soil_pars_f%lod == 1 ) THEN
2007	ALLOCATE( soil_pars_f%pars_xy(0:soil_pars_f%np-1, &
2008	nys:nyn,nxl:nxr) )
2009
2010	CALL get_variable( id_surf, 'soil_pars', soil_pars_f%pars_xy, &
2011	nxl, nxr, nys, nyn, 0, soil_pars_f%np-1 )
2012
2013	ELSEIF ( soil_pars_f%lod == 2 ) THEN
2014	ALLOCATE( soil_pars_f%pars_xyz(0:soil_pars_f%np-1, &
2015	0:soil_pars_f%nz-1, &
2016	nys:nyn,nxl:nxr) )
2017	CALL get_variable( id_surf, 'soil_pars', &
2018	soil_pars_f%pars_xyz, &
2019	nxl, nxr, nys, nyn, 0, soil_pars_f%nz-1, &
2020	0, soil_pars_f%np-1 )
2021
2022	ENDIF
2023	ELSE
2024	soil_pars_f%from_file = .FALSE.
2025	ENDIF
2026
2027	!
2028	!-- Read water parameters and related information
2029	IF ( check_existence( var_names, 'water_pars' ) ) THEN
2030	water_pars_f%from_file = .TRUE.
2031	CALL get_attribute( id_surf, char_fill, &
2032	water_pars_f%fill, &
2033	.FALSE., 'water_pars' )
2034	!
2035	!-- Inquire number of water parameters
2036	CALL netcdf_data_input_get_dimension_length( id_surf, &
2037	water_pars_f%np, &
2038	'nwater_pars' )
2039	!
2040	!-- Allocate dimension array and input array for water parameters
2041	ALLOCATE( water_pars_f%pars(0:water_pars_f%np-1) )
2042	ALLOCATE( water_pars_f%pars_xy(0:water_pars_f%np-1, &
2043	nys:nyn,nxl:nxr) )
2044	!
2045	!-- Get dimension of water parameters
2046	CALL get_variable( id_surf, 'nwater_pars', water_pars_f%pars )
2047
2048	CALL get_variable( id_surf, 'water_pars', water_pars_f%pars_xy, &
2049	nxl, nxr, nys, nyn, 0, water_pars_f%np-1 )
2050	ELSE
2051	water_pars_f%from_file = .FALSE.
2052	ENDIF
2053	!
2054	!-- Read root area density - parametrized vegetation
2055	IF ( check_existence( var_names, 'root_area_dens_s' ) ) THEN
2056	root_area_density_lsm_f%from_file = .TRUE.
2057	CALL get_attribute( id_surf, char_fill, &
2058	root_area_density_lsm_f%fill, &
2059	.FALSE., 'root_area_dens_s' )
2060	!
2061	!-- Obtain number of soil layers from file and allocate variable
2062	CALL netcdf_data_input_get_dimension_length( id_surf, &
2063	root_area_density_lsm_f%nz, &
2064	'zsoil' )
2065	ALLOCATE( root_area_density_lsm_f%var &
2066	(0:root_area_density_lsm_f%nz-1, &
2067	nys:nyn,nxl:nxr) )
2068
2069	!
2070	!-- Read root-area density
2071	CALL get_variable( id_surf, 'root_area_dens_s', &
2072	root_area_density_lsm_f%var, &
2073	nxl, nxr, nys, nyn, &
2074	0, root_area_density_lsm_f%nz-1 )
2075
2076	ELSE
2077	root_area_density_lsm_f%from_file = .FALSE.
2078	ENDIF
2079	!
2080	!-- Read street type and street crossing
2081	IF ( check_existence( var_names, 'street_type' ) ) THEN
2082	street_type_f%from_file = .TRUE.
2083	CALL get_attribute( id_surf, char_fill, &
2084	street_type_f%fill, .FALSE., &
2085	'street_type' )
2086
2087	ALLOCATE ( street_type_f%var(nys:nyn,nxl:nxr) )
2088
2089	CALL get_variable( id_surf, 'street_type', street_type_f%var, &
2090	nxl, nxr, nys, nyn )
2091	ELSE
2092	street_type_f%from_file = .FALSE.
2093	ENDIF
2094
2095	IF ( check_existence( var_names, 'street_crossing' ) ) THEN
2096	street_crossing_f%from_file = .TRUE.
2097	CALL get_attribute( id_surf, char_fill, &
2098	street_crossing_f%fill, .FALSE., &
2099	'street_crossing' )
2100
2101	ALLOCATE ( street_crossing_f%var(nys:nyn,nxl:nxr) )
2102
2103	CALL get_variable( id_surf, 'street_crossing', &
2104	street_crossing_f%var, nxl, nxr, nys, nyn )
2105
2106	ELSE
2107	street_crossing_f%from_file = .FALSE.
2108	ENDIF
2109	!
2110	!-- Still missing: root_resolved and building_surface_pars.
2111	!-- Will be implemented as soon as they are available.
2112
2113	!
2114	!-- Finally, close input file
2115	CALL close_input_file( id_surf )
2116	#endif
2117	!
2118	!-- End of CPU measurement
2119	CALL cpu_log( log_point_s(82), 'NetCDF input', 'stop' )
2120	!
2121	!-- Exchange ghost points for surface variables. Therefore, resize
2122	!-- variables.
2123	IF ( albedo_type_f%from_file ) THEN
2124	CALL resize_array_2d_int8( albedo_type_f%var, nys, nyn, nxl, nxr )
2125	CALL exchange_horiz_2d_byte( albedo_type_f%var, nys, nyn, nxl, nxr, &
2126	nbgp )
2127	ENDIF
2128	IF ( pavement_type_f%from_file ) THEN
2129	CALL resize_array_2d_int8( pavement_type_f%var, nys, nyn, nxl, nxr )
2130	CALL exchange_horiz_2d_byte( pavement_type_f%var, nys, nyn, nxl, nxr,&
2131	nbgp )
2132	ENDIF
2133	IF ( soil_type_f%from_file .AND. ALLOCATED( soil_type_f%var_2d ) ) THEN
2134	CALL resize_array_2d_int8( soil_type_f%var_2d, nys, nyn, nxl, nxr )
2135	CALL exchange_horiz_2d_byte( soil_type_f%var_2d, nys, nyn, nxl, nxr, &
2136	nbgp )
2137	ENDIF
2138	IF ( vegetation_type_f%from_file ) THEN
2139	CALL resize_array_2d_int8( vegetation_type_f%var, nys, nyn, nxl, nxr )
2140	CALL exchange_horiz_2d_byte( vegetation_type_f%var, nys, nyn, nxl, &
2141	nxr, nbgp )
2142	ENDIF
2143	IF ( water_type_f%from_file ) THEN
2144	CALL resize_array_2d_int8( water_type_f%var, nys, nyn, nxl, nxr )
2145	CALL exchange_horiz_2d_byte( water_type_f%var, nys, nyn, nxl, nxr, &
2146	nbgp )
2147	ENDIF
2148	!
2149	!-- Exchange ghost points for 3/4-D variables. For the sake of simplicity,
2150	!-- loop further dimensions to use 2D exchange routines. Unfortunately this
2151	!-- is necessary, else new MPI-data types need to be introduced just for
2152	!-- 2 variables.
2153	IF ( soil_type_f%from_file .AND. ALLOCATED( soil_type_f%var_3d ) ) &
2154	THEN
2155	CALL resize_array_3d_int8( soil_type_f%var_3d, 0, nz_soil, &
2156	nys, nyn, nxl, nxr )
2157	DO k = 0, nz_soil
2158	CALL exchange_horiz_2d_int( &
2159	soil_type_f%var_3d(k,:,:), nys, nyn, nxl, nxr, nbgp )
2160	ENDDO
2161	ENDIF
2162
2163	IF ( surface_fraction_f%from_file ) THEN
2164	CALL resize_array_3d_real( surface_fraction_f%frac, &
2165	0, surface_fraction_f%nf-1, &
2166	nys, nyn, nxl, nxr )
2167	DO k = 0, surface_fraction_f%nf-1
2168	CALL exchange_horiz_2d( surface_fraction_f%frac(k,:,:), nbgp )
2169	ENDDO
2170	ENDIF
2171
2172	IF ( building_pars_f%from_file ) THEN
2173	CALL resize_array_3d_real( building_pars_f%pars_xy, &
2174	0, building_pars_f%np-1, &
2175	nys, nyn, nxl, nxr )
2176	DO k = 0, building_pars_f%np-1
2177	CALL exchange_horiz_2d( building_pars_f%pars_xy(k,:,:), nbgp )
2178	ENDDO
2179	ENDIF
2180
2181	IF ( albedo_pars_f%from_file ) THEN
2182	CALL resize_array_3d_real( albedo_pars_f%pars_xy, &
2183	0, albedo_pars_f%np-1, &
2184	nys, nyn, nxl, nxr )
2185	DO k = 0, albedo_pars_f%np-1
2186	CALL exchange_horiz_2d( albedo_pars_f%pars_xy(k,:,:), nbgp )
2187	ENDDO
2188	ENDIF
2189
2190	IF ( pavement_pars_f%from_file ) THEN
2191	CALL resize_array_3d_real( pavement_pars_f%pars_xy, &
2192	0, pavement_pars_f%np-1, &
2193	nys, nyn, nxl, nxr )
2194	DO k = 0, pavement_pars_f%np-1
2195	CALL exchange_horiz_2d( pavement_pars_f%pars_xy(k,:,:), nbgp )
2196	ENDDO
2197	ENDIF
2198
2199	IF ( vegetation_pars_f%from_file ) THEN
2200	CALL resize_array_3d_real( vegetation_pars_f%pars_xy, &
2201	0, vegetation_pars_f%np-1, &
2202	nys, nyn, nxl, nxr )
2203	DO k = 0, vegetation_pars_f%np-1
2204	CALL exchange_horiz_2d( vegetation_pars_f%pars_xy(k,:,:), nbgp )
2205	ENDDO
2206	ENDIF
2207
2208	IF ( water_pars_f%from_file ) THEN
2209	CALL resize_array_3d_real( water_pars_f%pars_xy, &
2210	0, water_pars_f%np-1, &
2211	nys, nyn, nxl, nxr )
2212	DO k = 0, water_pars_f%np-1
2213	CALL exchange_horiz_2d( water_pars_f%pars_xy(k,:,:), nbgp )
2214	ENDDO
2215	ENDIF
2216
2217	IF ( root_area_density_lsm_f%from_file ) THEN
2218	CALL resize_array_3d_real( root_area_density_lsm_f%var, &
2219	0, root_area_density_lsm_f%nz-1, &
2220	nys, nyn, nxl, nxr )
2221	DO k = 0, root_area_density_lsm_f%nz-1
2222	CALL exchange_horiz_2d( root_area_density_lsm_f%var(k,:,:), nbgp )
2223	ENDDO
2224	ENDIF
2225
2226	IF ( soil_pars_f%from_file ) THEN
2227	IF ( soil_pars_f%lod == 1 ) THEN
2228
2229	CALL resize_array_3d_real( soil_pars_f%pars_xy, &
2230	0, soil_pars_f%np-1, &
2231	nys, nyn, nxl, nxr )
2232	DO k = 0, soil_pars_f%np-1
2233	CALL exchange_horiz_2d( soil_pars_f%pars_xy(k,:,:), nbgp )
2234	ENDDO
2235
2236	ELSEIF ( soil_pars_f%lod == 2 ) THEN
2237	CALL resize_array_4d_real( soil_pars_f%pars_xyz, &
2238	0, soil_pars_f%np-1, &
2239	0, soil_pars_f%nz-1, &
2240	nys, nyn, nxl, nxr )
2241
2242	DO k2 = 0, soil_pars_f%nz-1
2243	DO k = 0, soil_pars_f%np-1
2244	CALL exchange_horiz_2d( soil_pars_f%pars_xyz(k,k2,:,:), &
2245	nbgp )
2246	ENDDO
2247	ENDDO
2248	ENDIF
2249	ENDIF
2250
2251	IF ( pavement_subsurface_pars_f%from_file ) THEN
2252	CALL resize_array_4d_real( pavement_subsurface_pars_f%pars_xyz, &
2253	0, pavement_subsurface_pars_f%np-1, &
2254	0, pavement_subsurface_pars_f%nz-1, &
2255	nys, nyn, nxl, nxr )
2256
2257	DO k2 = 0, pavement_subsurface_pars_f%nz-1
2258	DO k = 0, pavement_subsurface_pars_f%np-1
2259	CALL exchange_horiz_2d( &
2260	pavement_subsurface_pars_f%pars_xyz(k,k2,:,:), nbgp )
2261	ENDDO
2262	ENDDO
2263	ENDIF
2264
2265	END SUBROUTINE netcdf_data_input_surface_data
2266
2267	!------------------------------------------------------------------------------!
2268	! Description:
2269	! ------------
2270	!> Reads uvem lookup table information.
2271	!------------------------------------------------------------------------------!
2272	SUBROUTINE netcdf_data_input_uvem
2273
2274	USE indices, &
2275	ONLY: nxl, nxr, nyn, nys
2276
2277	IMPLICIT NONE
2278
2279	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names !< variable names in static input file
2280
2281
2282	INTEGER(iwp) :: id_uvem !< NetCDF id of uvem lookup table input file
2283	INTEGER(iwp) :: nli = 35 !< dimension length of lookup table in x
2284	INTEGER(iwp) :: nlj = 9 !< dimension length of lookup table in y
2285	INTEGER(iwp) :: nlk = 90 !< dimension length of lookup table in z
2286	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
2287	!
2288	!-- Input via uv exposure model lookup table input
2289	IF ( input_pids_uvem ) THEN
2290
2291	#if defined ( __netcdf )
2292	!
2293	!-- Open file in read-only mode
2294	CALL open_read_file( TRIM( input_file_uvem ) // &
2295	TRIM( coupling_char ), id_uvem )
2296	!
2297	!-- At first, inquire all variable names.
2298	!-- This will be used to check whether an input variable exist or not.
2299	CALL inquire_num_variables( id_uvem, num_vars )
2300	!
2301	!-- Allocate memory to store variable names and inquire them.
2302	ALLOCATE( var_names(1:num_vars) )
2303	CALL inquire_variable_names( id_uvem, var_names )
2304	!
2305	!-- uvem integration
2306	IF ( check_existence( var_names, 'int_factors' ) ) THEN
2307	uvem_integration_f%from_file = .TRUE.
2308	!
2309	!-- Input 2D uvem integration.
2310	ALLOCATE ( uvem_integration_f%var(0:nlj,0:nli) )
2311
2312	CALL get_variable( id_uvem, 'int_factors', uvem_integration_f%var, 0, nli, 0, nlj )
2313	ELSE
2314	uvem_integration_f%from_file = .FALSE.
2315	ENDIF
2316	!
2317	!-- uvem irradiance
2318	IF ( check_existence( var_names, 'irradiance' ) ) THEN
2319	uvem_irradiance_f%from_file = .TRUE.
2320	!
2321	!-- Input 2D uvem irradiance.
2322	ALLOCATE ( uvem_irradiance_f%var(0:nlk, 0:2) )
2323
2324	CALL get_variable( id_uvem, 'irradiance', uvem_irradiance_f%var, 0, 2, 0, nlk )
2325	ELSE
2326	uvem_irradiance_f%from_file = .FALSE.
2327	ENDIF
2328	!
2329	!-- uvem porjection areas
2330	IF ( check_existence( var_names, 'projarea' ) ) THEN
2331	uvem_projarea_f%from_file = .TRUE.
2332	!
2333	!-- Input 3D uvem projection area (human geometgry)
2334	ALLOCATE ( uvem_projarea_f%var(0:2,0:nlj,0:nli) )
2335
2336	CALL get_variable( id_uvem, 'projarea', uvem_projarea_f%var, 0, nli, 0, nlj, 0, 2 )
2337	ELSE
2338	uvem_projarea_f%from_file = .FALSE.
2339	ENDIF
2340	!
2341	!-- uvem radiance
2342	IF ( check_existence( var_names, 'radiance' ) ) THEN
2343	uvem_radiance_f%from_file = .TRUE.
2344	!
2345	!-- Input 3D uvem radiance
2346	ALLOCATE ( uvem_radiance_f%var(0:nlk,0:nlj,0:nli) )
2347
2348	CALL get_variable( id_uvem, 'radiance', uvem_radiance_f%var, 0, nli, 0, nlj, 0, nlk )
2349	ELSE
2350	uvem_radiance_f%from_file = .FALSE.
2351	ENDIF
2352	!
2353	!-- Read building obstruction
2354	IF ( check_existence( var_names, 'obstruction' ) ) THEN
2355	building_obstruction_full%from_file = .TRUE.
2356	!-- Input 3D uvem building obstruction
2357	ALLOCATE ( building_obstruction_full%var_3d(0:44,0:2,0:2) )
2358	CALL get_variable( id_uvem, 'obstruction', building_obstruction_full%var_3d,0, 2, 0, 2, 0, 44 )
2359	ELSE
2360	building_obstruction_full%from_file = .FALSE.
2361	ENDIF
2362	!
2363	IF ( check_existence( var_names, 'obstruction' ) ) THEN
2364	building_obstruction_f%from_file = .TRUE.
2365	!
2366	!-- Input 3D uvem building obstruction
2367	ALLOCATE ( building_obstruction_f%var_3d(0:44,nys:nyn,nxl:nxr) )
2368	!
2369	CALL get_variable( id_uvem, 'obstruction', building_obstruction_f%var_3d, &
2370	nxl, nxr, nys, nyn, 0, 44 )
2371	ELSE
2372	building_obstruction_f%from_file = .FALSE.
2373	ENDIF
2374	!
2375	!-- Close uvem lookup table input file
2376	CALL close_input_file( id_uvem )
2377	#else
2378	CONTINUE
2379	#endif
2380	ENDIF
2381	END SUBROUTINE netcdf_data_input_uvem
2382
2383	!------------------------------------------------------------------------------!
2384	! Description:
2385	! ------------
2386	!> Reads orography and building information.
2387	!------------------------------------------------------------------------------!
2388	SUBROUTINE netcdf_data_input_topo
2389
2390	USE control_parameters, &
2391	ONLY: bc_lr_cyc, bc_ns_cyc, message_string, topography
2392
2393	USE indices, &
2394	ONLY: nbgp, nx, nxl, nxr, ny, nyn, nys, nzb
2395
2396
2397	IMPLICIT NONE
2398
2399	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names !< variable names in static input file
2400
2401
2402	INTEGER(iwp) :: i !< running index along x-direction
2403	INTEGER(iwp) :: ii !< running index for IO blocks
2404	INTEGER(iwp) :: id_topo !< NetCDF id of topograhy input file
2405	INTEGER(iwp) :: j !< running index along y-direction
2406	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
2407	INTEGER(iwp) :: skip_n_rows !< counting variable to skip rows while reading topography file
2408
2409	REAL(wp) :: dum !< dummy variable to skip columns while reading topography file
2410	!
2411	!-- CPU measurement
2412	CALL cpu_log( log_point_s(83), 'NetCDF/ASCII input topo', 'start' )
2413
2414	!
2415	!-- Input via palm-input data standard
2416	IF ( input_pids_static ) THEN
2417	#if defined ( __netcdf )
2418	!
2419	!-- Open file in read-only mode
2420	CALL open_read_file( TRIM( input_file_static ) // &
2421	TRIM( coupling_char ), id_topo )
2422	!
2423	!-- At first, inquire all variable names.
2424	!-- This will be used to check whether an input variable exist
2425	!-- or not.
2426	CALL inquire_num_variables( id_topo, num_vars )
2427	!
2428	!-- Allocate memory to store variable names and inquire them.
2429	ALLOCATE( var_names(1:num_vars) )
2430	CALL inquire_variable_names( id_topo, var_names )
2431	!
2432	!-- Read x, y - dimensions. Only required for consistency checks.
2433	CALL netcdf_data_input_get_dimension_length( id_topo, dim_static%nx, 'x' )
2434	CALL netcdf_data_input_get_dimension_length( id_topo, dim_static%ny, 'y' )
2435	ALLOCATE( dim_static%x(0:dim_static%nx-1) )
2436	ALLOCATE( dim_static%y(0:dim_static%ny-1) )
2437	CALL get_variable( id_topo, 'x', dim_static%x )
2438	CALL get_variable( id_topo, 'y', dim_static%y )
2439	!
2440	!-- Terrain height. First, get variable-related _FillValue attribute
2441	IF ( check_existence( var_names, 'zt' ) ) THEN
2442	terrain_height_f%from_file = .TRUE.
2443	CALL get_attribute( id_topo, char_fill, terrain_height_f%fill, &
2444	.FALSE., 'zt' )
2445	!
2446	!-- Input 2D terrain height.
2447	ALLOCATE ( terrain_height_f%var(nys:nyn,nxl:nxr) )
2448
2449	CALL get_variable( id_topo, 'zt', terrain_height_f%var, &
2450	nxl, nxr, nys, nyn )
2451
2452	ELSE
2453	terrain_height_f%from_file = .FALSE.
2454	ENDIF
2455
2456	!
2457	!-- Read building height. First, read its _FillValue attribute,
2458	!-- as well as lod attribute
2459	buildings_f%from_file = .FALSE.
2460	IF ( check_existence( var_names, 'buildings_2d' ) ) THEN
2461	buildings_f%from_file = .TRUE.
2462	CALL get_attribute( id_topo, char_lod, buildings_f%lod, &
2463	.FALSE., 'buildings_2d' )
2464
2465	CALL get_attribute( id_topo, char_fill, buildings_f%fill1, &
2466	.FALSE., 'buildings_2d' )
2467
2468	!
2469	!-- Read 2D buildings
2470	IF ( buildings_f%lod == 1 ) THEN
2471	ALLOCATE ( buildings_f%var_2d(nys:nyn,nxl:nxr) )
2472
2473	CALL get_variable( id_topo, 'buildings_2d', &
2474	buildings_f%var_2d, &
2475	nxl, nxr, nys, nyn )
2476	ELSE
2477	message_string = 'NetCDF attribute lod ' // &
2478	'(level of detail) is not set ' // &
2479	'properly for buildings_2d.'
2480	CALL message( 'netcdf_data_input_mod', 'PA0540', &
2481	1, 2, 0, 6, 0 )
2482	ENDIF
2483	ENDIF
2484	!
2485	!-- If available, also read 3D building information. If both are
2486	!-- available, use 3D information.
2487	IF ( check_existence( var_names, 'buildings_3d' ) ) THEN
2488	buildings_f%from_file = .TRUE.
2489	CALL get_attribute( id_topo, char_lod, buildings_f%lod, &
2490	.FALSE., 'buildings_3d' )
2491
2492	CALL get_attribute( id_topo, char_fill, buildings_f%fill2, &
2493	.FALSE., 'buildings_3d' )
2494
2495	CALL netcdf_data_input_get_dimension_length( id_topo, &
2496	buildings_f%nz, 'z' )
2497	!
2498	!-- Read 3D buildings
2499	IF ( buildings_f%lod == 2 ) THEN
2500	ALLOCATE( buildings_f%z(nzb:buildings_f%nz-1) )
2501	CALL get_variable( id_topo, 'z', buildings_f%z )
2502
2503	ALLOCATE( buildings_f%var_3d(nzb:buildings_f%nz-1, &
2504	nys:nyn,nxl:nxr) )
2505	buildings_f%var_3d = 0
2506
2507	CALL get_variable( id_topo, 'buildings_3d', &
2508	buildings_f%var_3d, &
2509	nxl, nxr, nys, nyn, 0, buildings_f%nz-1 )
2510	ELSE
2511	message_string = 'NetCDF attribute lod ' // &
2512	'(level of detail) is not set ' // &
2513	'properly for buildings_3d.'
2514	CALL message( 'netcdf_data_input_mod', 'PA0541', &
2515	1, 2, 0, 6, 0 )
2516	ENDIF
2517	ENDIF
2518	!
2519	!-- Read building IDs and its FillValue attribute. Further required
2520	!-- for mapping buildings on top of orography.
2521	IF ( check_existence( var_names, 'building_id' ) ) THEN
2522	building_id_f%from_file = .TRUE.
2523	CALL get_attribute( id_topo, char_fill, &
2524	building_id_f%fill, .FALSE., &
2525	'building_id' )
2526
2527	ALLOCATE ( building_id_f%var(nys:nyn,nxl:nxr) )
2528
2529	CALL get_variable( id_topo, 'building_id', building_id_f%var, &
2530	nxl, nxr, nys, nyn )
2531	ELSE
2532	building_id_f%from_file = .FALSE.
2533	ENDIF
2534	!
2535	!-- Read building_type and required attributes.
2536	IF ( check_existence( var_names, 'building_type' ) ) THEN
2537	building_type_f%from_file = .TRUE.
2538	CALL get_attribute( id_topo, char_fill, &
2539	building_type_f%fill, .FALSE., &
2540	'building_type' )
2541
2542	ALLOCATE ( building_type_f%var(nys:nyn,nxl:nxr) )
2543
2544	CALL get_variable( id_topo, 'building_type', building_type_f%var, &
2545	nxl, nxr, nys, nyn )
2546
2547	ELSE
2548	building_type_f%from_file = .FALSE.
2549	ENDIF
2550	!
2551	!-- Close topography input file
2552	CALL close_input_file( id_topo )
2553	#else
2554	CONTINUE
2555	#endif
2556	!
2557	!-- ASCII input
2558	ELSEIF ( TRIM( topography ) == 'read_from_file' ) THEN
2559
2560	DO ii = 0, io_blocks-1
2561	IF ( ii == io_group ) THEN
2562
2563	OPEN( 90, FILE='TOPOGRAPHY_DATA'//TRIM( coupling_char ), &
2564	STATUS='OLD', FORM='FORMATTED', ERR=10 )
2565	!
2566	!-- Read topography PE-wise. Rows are read from nyn to nys, columns
2567	!-- are read from nxl to nxr. At first, ny-nyn rows need to be skipped.
2568	skip_n_rows = 0
2569	DO WHILE ( skip_n_rows < ny - nyn )
2570	READ( 90, * )
2571	skip_n_rows = skip_n_rows + 1
2572	ENDDO
2573	!
2574	!-- Read data from nyn to nys and nxl to nxr. Therefore, skip
2575	!-- column until nxl-1 is reached
2576	ALLOCATE ( buildings_f%var_2d(nys:nyn,nxl:nxr) )
2577	DO j = nyn, nys, -1
2578	READ( 90, *, ERR=11, END=11 ) &
2579	( dum, i = 0, nxl-1 ), &
2580	( buildings_f%var_2d(j,i), i = nxl, nxr )
2581	ENDDO
2582
2583	GOTO 12
2584
2585	10 message_string = 'file TOPOGRAPHY_DATA'// &
2586	TRIM( coupling_char )// ' does not exist'
2587	CALL message( 'netcdf_data_input_mod', 'PA0208', 1, 2, 0, 6, 0 )
2588
2589	11 message_string = 'errors in file TOPOGRAPHY_DATA'// &
2590	TRIM( coupling_char )
2591	CALL message( 'netcdf_data_input_mod', 'PA0209', 2, 2, 0, 6, 0 )
2592
2593	12 CLOSE( 90 )
2594	buildings_f%from_file = .TRUE.
2595
2596	ENDIF
2597	#if defined( __parallel )
2598	CALL MPI_BARRIER( comm2d, ierr )
2599	#endif
2600	ENDDO
2601
2602	ENDIF
2603	!
2604	!-- End of CPU measurement
2605	CALL cpu_log( log_point_s(83), 'NetCDF/ASCII input topo', 'stop' )
2606	!
2607	!-- Check for minimum requirement to setup building topography. If buildings
2608	!-- are provided, also an ID and a type are required.
2609	!-- Note, doing this check in check_parameters
2610	!-- will be too late (data will be used for grid inititialization before).
2611	IF ( input_pids_static ) THEN
2612	IF ( buildings_f%from_file .AND. &
2613	.NOT. building_id_f%from_file ) THEN
2614	message_string = 'If building heigths are prescribed in ' // &
2615	'static input file, also an ID is required.'
2616	CALL message( 'netcdf_data_input_mod', 'PA0542', 1, 2, 0, 6, 0 )
2617	ENDIF
2618	ENDIF
2619	!
2620	!-- In case no terrain height is provided by static input file, allocate
2621	!-- array nevertheless and set terrain height to 0, which simplifies
2622	!-- topography initialization.
2623	IF ( .NOT. terrain_height_f%from_file ) THEN
2624	ALLOCATE ( terrain_height_f%var(nys:nyn,nxl:nxr) )
2625	terrain_height_f%var = 0.0_wp
2626	ENDIF
2627	!
2628	!-- Finally, exchange 1 ghost point for building ID and type.
2629	!-- In case of non-cyclic boundary conditions set Neumann conditions at the
2630	!-- lateral boundaries.
2631	IF ( building_id_f%from_file ) THEN
2632	CALL resize_array_2d_int32( building_id_f%var, nys, nyn, nxl, nxr )
2633	CALL exchange_horiz_2d_int( building_id_f%var, nys, nyn, nxl, nxr, &
2634	nbgp )
2635	ENDIF
2636
2637	IF ( building_type_f%from_file ) THEN
2638	CALL resize_array_2d_int8( building_type_f%var, nys, nyn, nxl, nxr )
2639	CALL exchange_horiz_2d_byte( building_type_f%var, nys, nyn, nxl, nxr, &
2640	nbgp )
2641	ENDIF
2642
2643	END SUBROUTINE netcdf_data_input_topo
2644
2645	!------------------------------------------------------------------------------!
2646	! Description:
2647	! ------------
2648	!> Reads initialization data of u, v, w, pt, q, geostrophic wind components,
2649	!> as well as soil moisture and soil temperature, derived from larger-scale
2650	!> model (COSMO) by Inifor.
2651	!------------------------------------------------------------------------------!
2652	SUBROUTINE netcdf_data_input_init_3d
2653
2654	USE arrays_3d, &
2655	ONLY: q, pt, u, v, w, zu, zw
2656
2657	USE control_parameters, &
2658	ONLY: bc_lr_cyc, bc_ns_cyc, humidity, message_string, neutral
2659
2660	USE indices, &
2661	ONLY: nx, nxl, nxlu, nxr, ny, nyn, nys, nysv, nzb, nz, nzt
2662
2663	IMPLICIT NONE
2664
2665	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names
2666
2667	LOGICAL :: dynamic_3d = .TRUE. !< flag indicating that 3D data is read from dynamic file
2668
2669	INTEGER(iwp) :: id_dynamic !< NetCDF id of dynamic input file
2670	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
2671
2672	LOGICAL :: check_passed !< flag indicating if a check passed
2673
2674	!
2675	!-- Skip routine if no input file with dynamic input data is available.
2676	IF ( .NOT. input_pids_dynamic ) RETURN
2677	!
2678	!-- Please note, Inifor is designed to provide initial data for u and v for
2679	!-- the prognostic grid points in case of lateral Dirichlet conditions.
2680	!-- This means that Inifor provides data from nxlu:nxr (for u) and
2681	!-- from nysv:nyn (for v) at the left and south domain boundary, respectively.
2682	!-- However, as work-around for the moment, PALM will run with cyclic
2683	!-- conditions and will be initialized with data provided by Inifor
2684	!-- boundaries in case of Dirichlet.
2685	!-- Hence, simply set set nxlu/nysv to 1 (will be reset to its original value
2686	!-- at the end of this routine.
2687	IF ( bc_lr_cyc .AND. nxl == 0 ) nxlu = 1
2688	IF ( bc_ns_cyc .AND. nys == 0 ) nysv = 1
2689
2690	!
2691	!-- CPU measurement
2692	CALL cpu_log( log_point_s(85), 'NetCDF input init', 'start' )
2693
2694	#if defined ( __netcdf )
2695	!
2696	!-- Open file in read-only mode
2697	CALL open_read_file( TRIM( input_file_dynamic ) // &
2698	TRIM( coupling_char ), id_dynamic )
2699
2700	!
2701	!-- At first, inquire all variable names.
2702	CALL inquire_num_variables( id_dynamic, num_vars )
2703	!
2704	!-- Allocate memory to store variable names.
2705	ALLOCATE( var_names(1:num_vars) )
2706	CALL inquire_variable_names( id_dynamic, var_names )
2707	!
2708	!-- Read vertical dimension of scalar und w grid.
2709	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nzu, 'z' )
2710	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nzw, 'zw' )
2711	!
2712	!-- Read also the horizontal dimensions. These are used just used fo
2713	!-- checking the compatibility with the PALM grid before reading.
2714	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nx, 'x' )
2715	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nxu, 'xu' )
2716	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%ny, 'y' )
2717	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nyv, 'yv' )
2718
2719	!
2720	!-- Check for correct horizontal and vertical dimension. Please note,
2721	!-- checks are performed directly here and not called from
2722	!-- check_parameters as some varialbes are still not allocated there.
2723	!-- Moreover, please note, u- and v-grid has 1 grid point less on
2724	!-- Inifor grid.
2725	IF ( init_3d%nx-1 /= nx .OR. init_3d%nxu-1 /= nx - 1 .OR. &
2726	init_3d%ny-1 /= ny .OR. init_3d%nyv-1 /= ny - 1 ) THEN
2727	message_string = 'Number of inifor horizontal grid points '// &
2728	'does not match the number of numeric grid '// &
2729	'points.'
2730	CALL message( 'netcdf_data_input_mod', 'PA0543', 1, 2, 0, 6, 0 )
2731	ENDIF
2732
2733	IF ( init_3d%nzu /= nz ) THEN
2734	message_string = 'Number of inifor vertical grid points ' // &
2735	'does not match the number of numeric grid '// &
2736	'points.'
2737	CALL message( 'netcdf_data_input_mod', 'PA0543', 1, 2, 0, 6, 0 )
2738	ENDIF
2739	!
2740	!-- Read vertical dimensions. Later, these are required for eventual
2741	!-- inter- and extrapolations of the initialization data.
2742	IF ( check_existence( var_names, 'z' ) ) THEN
2743	ALLOCATE( init_3d%zu_atmos(1:init_3d%nzu) )
2744	CALL get_variable( id_dynamic, 'z', init_3d%zu_atmos )
2745	ENDIF
2746	IF ( check_existence( var_names, 'zw' ) ) THEN
2747	ALLOCATE( init_3d%zw_atmos(1:init_3d%nzw) )
2748	CALL get_variable( id_dynamic, 'zw', init_3d%zw_atmos )
2749	ENDIF
2750	!
2751	!-- Check for consistency between vertical coordinates in dynamic
2752	!-- driver and numeric grid.
2753	!-- Please note, depending on compiler options both may be
2754	!-- equal up to a certain threshold, and differences between
2755	!-- the numeric grid and vertical coordinate in the driver can built-
2756	!-- up to 10E-1-10E-0 m. For this reason, the check is performed not
2757	!-- for exactly matching values.
2758	IF ( ANY( ABS( zu(1:nzt) - init_3d%zu_atmos(1:init_3d%nzu) ) &
2759	> 10E-1 ) .OR. &
2760	ANY( ABS( zw(1:nzt-1) - init_3d%zw_atmos(1:init_3d%nzw) ) &
2761	> 10E-1 ) ) THEN
2762	message_string = 'Vertical grid in dynamic driver does not '// &
2763	'match the numeric grid.'
2764	CALL message( 'netcdf_data_input_mod', 'PA0543', 1, 2, 0, 6, 0 )
2765	ENDIF
2766	!
2767	!-- Read initial geostrophic wind components at
2768	!-- t = 0 (index 1 in file).
2769	IF ( check_existence( var_names, 'ls_forcing_ug' ) ) THEN
2770	ALLOCATE( init_3d%ug_init(nzb:nzt+1) )
2771	init_3d%ug_init = 0.0_wp
2772
2773	CALL get_variable_pr( id_dynamic, 'ls_forcing_ug', 1, &
2774	init_3d%ug_init(1:nzt) )
2775	!
2776	!-- Set top-boundary condition (Neumann)
2777	init_3d%ug_init(nzt+1) = init_3d%ug_init(nzt)
2778
2779	init_3d%from_file_ug = .TRUE.
2780	ELSE
2781	init_3d%from_file_ug = .FALSE.
2782	ENDIF
2783	IF ( check_existence( var_names, 'ls_forcing_vg' ) ) THEN
2784	ALLOCATE( init_3d%vg_init(nzb:nzt+1) )
2785	init_3d%vg_init = 0.0_wp
2786
2787	CALL get_variable_pr( id_dynamic, 'ls_forcing_vg', 1, &
2788	init_3d%vg_init(1:nzt) )
2789	!
2790	!-- Set top-boundary condition (Neumann)
2791	init_3d%vg_init(nzt+1) = init_3d%vg_init(nzt)
2792
2793	init_3d%from_file_vg = .TRUE.
2794	ELSE
2795	init_3d%from_file_vg = .FALSE.
2796	ENDIF
2797	!
2798	!-- Read inital 3D data of u, v, w, pt and q,
2799	!-- derived from COSMO model. Read PE-wise yz-slices.
2800	!-- Please note, the u-, v- and w-component are defined on different
2801	!-- grids with one element less in the x-, y-,
2802	!-- and z-direction, respectively. Hence, reading is subdivided
2803	!-- into separate loops.
2804	!-- Read u-component
2805	IF ( check_existence( var_names, 'init_atmosphere_u' ) ) THEN
2806	!
2807	!-- Read attributes for the fill value and level-of-detail
2808	CALL get_attribute( id_dynamic, char_fill, init_3d%fill_u, &
2809	.FALSE., 'init_atmosphere_u' )
2810	CALL get_attribute( id_dynamic, char_lod, init_3d%lod_u, &
2811	.FALSE., 'init_atmosphere_u' )
2812	!
2813	!-- level-of-detail 1 - read initialization profile
2814	IF ( init_3d%lod_u == 1 ) THEN
2815	ALLOCATE( init_3d%u_init(nzb:nzt+1) )
2816	init_3d%u_init = 0.0_wp
2817
2818	CALL get_variable( id_dynamic, 'init_atmosphere_u', &
2819	init_3d%u_init(nzb+1:nzt) )
2820	!
2821	!-- Set top-boundary condition (Neumann)
2822	init_3d%u_init(nzt+1) = init_3d%u_init(nzt)
2823	!
2824	!-- level-of-detail 2 - read 3D initialization data
2825	ELSEIF ( init_3d%lod_u == 2 ) THEN
2826	CALL get_variable( id_dynamic, 'init_atmosphere_u', &
2827	u(nzb+1:nzt,nys:nyn,nxlu:nxr), &
2828	nxlu, nys+1, nzb+1, &
2829	nxr-nxlu+1, nyn-nys+1, init_3d%nzu, &
2830	dynamic_3d )
2831	!
2832	!-- Set value at leftmost model grid point nxl = 0. This is because
2833	!-- Inifor provides data only from 1:nx-1 since it assumes non-cyclic
2834	!-- conditions.
2835	IF ( nxl == 0 ) &
2836	u(nzb+1:nzt,nys:nyn,nxl) = u(nzb+1:nzt,nys:nyn,nxlu)
2837	!
2838	!-- Set bottom and top-boundary
2839	u(nzb,:,:) = u(nzb+1,:,:)
2840	u(nzt+1,:,:) = u(nzt,:,:)
2841
2842	ENDIF
2843	init_3d%from_file_u = .TRUE.
2844	ELSE
2845	message_string = 'Missing initial data for u-component'
2846	CALL message( 'netcdf_data_input_mod', 'PA0544', 1, 2, 0, 6, 0 )
2847	ENDIF
2848	!
2849	!-- Read v-component
2850	IF ( check_existence( var_names, 'init_atmosphere_v' ) ) THEN
2851	!
2852	!-- Read attributes for the fill value and level-of-detail
2853	CALL get_attribute( id_dynamic, char_fill, init_3d%fill_v, &
2854	.FALSE., 'init_atmosphere_v' )
2855	CALL get_attribute( id_dynamic, char_lod, init_3d%lod_v, &
2856	.FALSE., 'init_atmosphere_v' )
2857	!
2858	!-- level-of-detail 1 - read initialization profile
2859	IF ( init_3d%lod_v == 1 ) THEN
2860	ALLOCATE( init_3d%v_init(nzb:nzt+1) )
2861	init_3d%v_init = 0.0_wp
2862
2863	CALL get_variable( id_dynamic, 'init_atmosphere_v', &
2864	init_3d%v_init(nzb+1:nzt) )
2865	!
2866	!-- Set top-boundary condition (Neumann)
2867	init_3d%v_init(nzt+1) = init_3d%v_init(nzt)
2868	!
2869	!-- level-of-detail 2 - read 3D initialization data
2870	ELSEIF ( init_3d%lod_v == 2 ) THEN
2871
2872	CALL get_variable( id_dynamic, 'init_atmosphere_v', &
2873	v(nzb+1:nzt,nysv:nyn,nxl:nxr), &
2874	nxl+1, nysv, nzb+1, &
2875	nxr-nxl+1, nyn-nysv+1, init_3d%nzu, &
2876	dynamic_3d )
2877	!
2878	!-- Set value at southmost model grid point nys = 0. This is because
2879	!-- Inifor provides data only from 1:ny-1 since it assumes non-cyclic
2880	!-- conditions.
2881	IF ( nys == 0 ) &
2882	v(nzb+1:nzt,nys,nxl:nxr) = v(nzb+1:nzt,nysv,nxl:nxr)
2883	!
2884	!-- Set bottom and top-boundary
2885	v(nzb,:,:) = v(nzb+1,:,:)
2886	v(nzt+1,:,:) = v(nzt,:,:)
2887
2888	ENDIF
2889	init_3d%from_file_v = .TRUE.
2890	ELSE
2891	message_string = 'Missing initial data for v-component'
2892	CALL message( 'netcdf_data_input_mod', 'PA0544', 1, 2, 0, 6, 0 )
2893	ENDIF
2894	!
2895	!-- Read w-component
2896	IF ( check_existence( var_names, 'init_atmosphere_w' ) ) THEN
2897	!
2898	!-- Read attributes for the fill value and level-of-detail
2899	CALL get_attribute( id_dynamic, char_fill, init_3d%fill_w, &
2900	.FALSE., 'init_atmosphere_w' )
2901	CALL get_attribute( id_dynamic, char_lod, init_3d%lod_w, &
2902	.FALSE., 'init_atmosphere_w' )
2903	!
2904	!-- level-of-detail 1 - read initialization profile
2905	IF ( init_3d%lod_w == 1 ) THEN
2906	ALLOCATE( init_3d%w_init(nzb:nzt+1) )
2907	init_3d%w_init = 0.0_wp
2908
2909	CALL get_variable( id_dynamic, 'init_atmosphere_w', &
2910	init_3d%w_init(nzb+1:nzt-1) )
2911	!
2912	!-- Set top-boundary condition (Neumann)
2913	init_3d%w_init(nzt:nzt+1) = init_3d%w_init(nzt-1)
2914	!
2915	!-- level-of-detail 2 - read 3D initialization data
2916	ELSEIF ( init_3d%lod_w == 2 ) THEN
2917
2918	CALL get_variable( id_dynamic, 'init_atmosphere_w', &
2919	w(nzb+1:nzt-1,nys:nyn,nxl:nxr), &
2920	nxl+1, nys+1, nzb+1, &
2921	nxr-nxl+1, nyn-nys+1, init_3d%nzw, &
2922	dynamic_3d )
2923	!
2924	!-- Set bottom and top-boundary
2925	w(nzb,:,:) = 0.0_wp
2926	w(nzt,:,:) = w(nzt-1,:,:)
2927	w(nzt+1,:,:) = w(nzt-1,:,:)
2928
2929	ENDIF
2930	init_3d%from_file_w = .TRUE.
2931	ELSE
2932	message_string = 'Missing initial data for w-component'
2933	CALL message( 'netcdf_data_input_mod', 'PA0544', 1, 2, 0, 6, 0 )
2934	ENDIF
2935	!
2936	!-- Read potential temperature
2937	IF ( .NOT. neutral ) THEN
2938	IF ( check_existence( var_names, 'init_atmosphere_pt' ) ) THEN
2939	!
2940	!-- Read attributes for the fill value and level-of-detail
2941	CALL get_attribute( id_dynamic, char_fill, init_3d%fill_pt, &
2942	.FALSE., 'init_atmosphere_pt' )
2943	CALL get_attribute( id_dynamic, char_lod, init_3d%lod_pt, &
2944	.FALSE., 'init_atmosphere_pt' )
2945	!
2946	!-- level-of-detail 1 - read initialization profile
2947	IF ( init_3d%lod_pt == 1 ) THEN
2948	ALLOCATE( init_3d%pt_init(nzb:nzt+1) )
2949
2950	CALL get_variable( id_dynamic, 'init_atmosphere_pt', &
2951	init_3d%pt_init(nzb+1:nzt) )
2952	!
2953	!-- Set Neumann top and surface boundary condition for initial
2954	!-- profil
2955	init_3d%pt_init(nzb) = init_3d%pt_init(nzb+1)
2956	init_3d%pt_init(nzt+1) = init_3d%pt_init(nzt)
2957	!
2958	!-- level-of-detail 2 - read 3D initialization data
2959	ELSEIF ( init_3d%lod_pt == 2 ) THEN
2960
2961	CALL get_variable( id_dynamic, 'init_atmosphere_pt', &
2962	pt(nzb+1:nzt,nys:nyn,nxl:nxr), &
2963	nxl+1, nys+1, nzb+1, &
2964	nxr-nxl+1, nyn-nys+1, init_3d%nzu, &
2965	dynamic_3d )
2966
2967	!
2968	!-- Set bottom and top-boundary
2969	pt(nzb,:,:) = pt(nzb+1,:,:)
2970	pt(nzt+1,:,:) = pt(nzt,:,:)
2971
2972	ENDIF
2973	init_3d%from_file_pt = .TRUE.
2974	ELSE
2975	message_string = 'Missing initial data for ' // &
2976	'potential temperature'
2977	CALL message( 'netcdf_data_input_mod', 'PA0544', 1, 2, 0, 6, 0 )
2978	ENDIF
2979	ENDIF
2980	!
2981	!-- Read mixing ratio
2982	IF ( humidity ) THEN
2983	IF ( check_existence( var_names, 'init_atmosphere_qv' ) ) THEN
2984	!
2985	!-- Read attributes for the fill value and level-of-detail
2986	CALL get_attribute( id_dynamic, char_fill, init_3d%fill_q, &
2987	.FALSE., 'init_atmosphere_qv' )
2988	CALL get_attribute( id_dynamic, char_lod, init_3d%lod_q, &
2989	.FALSE., 'init_atmosphere_qv' )
2990	!
2991	!-- level-of-detail 1 - read initialization profile
2992	IF ( init_3d%lod_q == 1 ) THEN
2993	ALLOCATE( init_3d%q_init(nzb:nzt+1) )
2994
2995	CALL get_variable( id_dynamic, 'init_atmosphere_qv', &
2996	init_3d%q_init(nzb+1:nzt) )
2997	!
2998	!-- Set bottom and top boundary condition (Neumann)
2999	init_3d%q_init(nzb) = init_3d%q_init(nzb+1)
3000	init_3d%q_init(nzt+1) = init_3d%q_init(nzt)
3001	!
3002	!-- level-of-detail 2 - read 3D initialization data
3003	ELSEIF ( init_3d%lod_q == 2 ) THEN
3004
3005	CALL get_variable( id_dynamic, 'init_atmosphere_qv', &
3006	q(nzb+1:nzt,nys:nyn,nxl:nxr), &
3007	nxl+1, nys+1, nzb+1, &
3008	nxr-nxl+1, nyn-nys+1, init_3d%nzu, &
3009	dynamic_3d )
3010
3011	!
3012	!-- Set bottom and top-boundary
3013	q(nzb,:,:) = q(nzb+1,:,:)
3014	q(nzt+1,:,:) = q(nzt,:,:)
3015
3016	ENDIF
3017	init_3d%from_file_q = .TRUE.
3018	ELSE
3019	message_string = 'Missing initial data for ' // &
3020	'mixing ratio'
3021	CALL message( 'netcdf_data_input_mod', 'PA0544', 1, 2, 0, 6, 0 )
3022	ENDIF
3023	ENDIF
3024	!
3025	!-- Close input file
3026	CALL close_input_file( id_dynamic )
3027	#endif
3028	!
3029	!-- End of CPU measurement
3030	CALL cpu_log( log_point_s(85), 'NetCDF input init', 'stop' )
3031	!
3032	!-- Finally, check if the input data has any fill values. Please note,
3033	!-- checks depend on the LOD of the input data.
3034	IF ( init_3d%from_file_u ) THEN
3035	check_passed = .TRUE.
3036	IF ( init_3d%lod_u == 1 ) THEN
3037	IF ( ANY( init_3d%u_init(nzb+1:nzt+1) == init_3d%fill_u ) ) &
3038	check_passed = .FALSE.
3039	ELSEIF ( init_3d%lod_u == 2 ) THEN
3040	IF ( ANY( u(nzb+1:nzt+1,nys:nyn,nxlu:nxr) == init_3d%fill_u ) ) &
3041	check_passed = .FALSE.
3042	ENDIF
3043	IF ( .NOT. check_passed ) THEN
3044	message_string = 'NetCDF input for init_atmosphere_u must ' // &
3045	'not contain any _FillValues'
3046	CALL message( 'netcdf_data_input_mod', 'PA0545', 2, 2, 0, 6, 0 )
3047	ENDIF
3048	ENDIF
3049
3050	IF ( init_3d%from_file_v ) THEN
3051	check_passed = .TRUE.
3052	IF ( init_3d%lod_v == 1 ) THEN
3053	IF ( ANY( init_3d%v_init(nzb+1:nzt+1) == init_3d%fill_v ) ) &
3054	check_passed = .FALSE.
3055	ELSEIF ( init_3d%lod_v == 2 ) THEN
3056	IF ( ANY( v(nzb+1:nzt+1,nysv:nyn,nxl:nxr) == init_3d%fill_v ) ) &
3057	check_passed = .FALSE.
3058	ENDIF
3059	IF ( .NOT. check_passed ) THEN
3060	message_string = 'NetCDF input for init_atmosphere_v must ' // &
3061	'not contain any _FillValues'
3062	CALL message( 'netcdf_data_input_mod', 'PA0545', 2, 2, 0, 6, 0 )
3063	ENDIF
3064	ENDIF
3065
3066	IF ( init_3d%from_file_w ) THEN
3067	check_passed = .TRUE.
3068	IF ( init_3d%lod_w == 1 ) THEN
3069	IF ( ANY( init_3d%w_init(nzb+1:nzt) == init_3d%fill_w ) ) &
3070	check_passed = .FALSE.
3071	ELSEIF ( init_3d%lod_w == 2 ) THEN
3072	IF ( ANY( w(nzb+1:nzt,nys:nyn,nxl:nxr) == init_3d%fill_w ) ) &
3073	check_passed = .FALSE.
3074	ENDIF
3075	IF ( .NOT. check_passed ) THEN
3076	message_string = 'NetCDF input for init_atmosphere_w must ' // &
3077	'not contain any _FillValues'
3078	CALL message( 'netcdf_data_input_mod', 'PA0545', 2, 2, 0, 6, 0 )
3079	ENDIF
3080	ENDIF
3081
3082	IF ( init_3d%from_file_pt ) THEN
3083	check_passed = .TRUE.
3084	IF ( init_3d%lod_pt == 1 ) THEN
3085	IF ( ANY( init_3d%pt_init(nzb+1:nzt+1) == init_3d%fill_pt ) ) &
3086	check_passed = .FALSE.
3087	ELSEIF ( init_3d%lod_pt == 2 ) THEN
3088	IF ( ANY( pt(nzb+1:nzt+1,nys:nyn,nxl:nxr) == init_3d%fill_pt ) ) &
3089	check_passed = .FALSE.
3090	ENDIF
3091	IF ( .NOT. check_passed ) THEN
3092	message_string = 'NetCDF input for init_atmosphere_pt must ' // &
3093	'not contain any _FillValues'
3094	CALL message( 'netcdf_data_input_mod', 'PA0545', 2, 2, 0, 6, 0 )
3095	ENDIF
3096	ENDIF
3097
3098	IF ( init_3d%from_file_q ) THEN
3099	check_passed = .TRUE.
3100	IF ( init_3d%lod_q == 1 ) THEN
3101	IF ( ANY( init_3d%q_init(nzb+1:nzt+1) == init_3d%fill_q ) ) &
3102	check_passed = .FALSE.
3103	ELSEIF ( init_3d%lod_q == 2 ) THEN
3104	IF ( ANY( q(nzb+1:nzt+1,nys:nyn,nxl:nxr) == init_3d%fill_q ) ) &
3105	check_passed = .FALSE.
3106	ENDIF
3107	IF ( .NOT. check_passed ) THEN
3108	message_string = 'NetCDF input for init_atmosphere_q must ' // &
3109	'not contain any _FillValues'
3110	CALL message( 'netcdf_data_input_mod', 'PA0545', 2, 2, 0, 6, 0 )
3111	ENDIF
3112	ENDIF
3113	!
3114	!-- Workaround for cyclic conditions. Please see above for further explanation.
3115	IF ( bc_lr_cyc .AND. nxl == 0 ) nxlu = nxl
3116	IF ( bc_ns_cyc .AND. nys == 0 ) nysv = nys
3117
3118	END SUBROUTINE netcdf_data_input_init_3d
3119
3120	!------------------------------------------------------------------------------!
3121	! Description:
3122	! ------------
3123	!> Reads initialization data of u, v, w, pt, q, geostrophic wind components,
3124	!> as well as soil moisture and soil temperature, derived from larger-scale
3125	!> model (COSMO) by Inifor.
3126	!------------------------------------------------------------------------------!
3127	SUBROUTINE netcdf_data_input_init_lsm
3128
3129	USE control_parameters, &
3130	ONLY: message_string
3131
3132	USE indices, &
3133	ONLY: nx, nxl, nxr, ny, nyn, nys
3134
3135	IMPLICIT NONE
3136
3137	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names
3138
3139	INTEGER(iwp) :: id_dynamic !< NetCDF id of dynamic input file
3140	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
3141
3142	!
3143	!-- Skip routine if no input file with dynamic input data is available.
3144	IF ( .NOT. input_pids_dynamic ) RETURN
3145	!
3146	!-- CPU measurement
3147	CALL cpu_log( log_point_s(85), 'NetCDF input init', 'start' )
3148
3149	#if defined ( __netcdf )
3150	!
3151	!-- Open file in read-only mode
3152	CALL open_read_file( TRIM( input_file_dynamic ) // &
3153	TRIM( coupling_char ), id_dynamic )
3154
3155	!
3156	!-- At first, inquire all variable names.
3157	CALL inquire_num_variables( id_dynamic, num_vars )
3158	!
3159	!-- Allocate memory to store variable names.
3160	ALLOCATE( var_names(1:num_vars) )
3161	CALL inquire_variable_names( id_dynamic, var_names )
3162	!
3163	!-- Read vertical dimension for soil depth.
3164	IF ( check_existence( var_names, 'zsoil' ) ) &
3165	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nzs,&
3166	'zsoil' )
3167	!
3168	!-- Read also the horizontal dimensions required for soil initialization.
3169	!-- Please note, in case of non-nested runs or in case of root domain,
3170	!-- these data is already available, but will be read again for the sake
3171	!-- of clearness.
3172	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nx, &
3173	'x' )
3174	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%ny, &
3175	'y' )
3176	!
3177	!-- Check for correct horizontal and vertical dimension. Please note,
3178	!-- in case of non-nested runs or in case of root domain, these checks
3179	!-- are already performed
3180	IF ( init_3d%nx-1 /= nx .OR. init_3d%ny-1 /= ny ) THEN
3181	message_string = 'Number of inifor horizontal grid points '// &
3182	'does not match the number of numeric grid points.'
3183	CALL message( 'netcdf_data_input_mod', 'PA0543', 1, 2, 0, 6, 0 )
3184	ENDIF
3185	!
3186	!-- Read vertical dimensions. Later, these are required for eventual
3187	!-- inter- and extrapolations of the initialization data.
3188	IF ( check_existence( var_names, 'zsoil' ) ) THEN
3189	ALLOCATE( init_3d%z_soil(1:init_3d%nzs) )
3190	CALL get_variable( id_dynamic, 'zsoil', init_3d%z_soil )
3191	ENDIF
3192	!
3193	!-- Read initial data for soil moisture
3194	IF ( check_existence( var_names, 'init_soil_m' ) ) THEN
3195	!
3196	!-- Read attributes for the fill value and level-of-detail
3197	CALL get_attribute( id_dynamic, char_fill, &
3198	init_3d%fill_msoil, &
3199	.FALSE., 'init_soil_m' )
3200	CALL get_attribute( id_dynamic, char_lod, &
3201	init_3d%lod_msoil, &
3202	.FALSE., 'init_soil_m' )
3203	!
3204	!-- level-of-detail 1 - read initialization profile
3205	IF ( init_3d%lod_msoil == 1 ) THEN
3206	ALLOCATE( init_3d%msoil_1d(0:init_3d%nzs-1) )
3207
3208	CALL get_variable( id_dynamic, 'init_soil_m', &
3209	init_3d%msoil_1d(0:init_3d%nzs-1) )
3210	!
3211	!-- level-of-detail 2 - read 3D initialization data
3212	ELSEIF ( init_3d%lod_msoil == 2 ) THEN
3213	ALLOCATE ( init_3d%msoil_3d(0:init_3d%nzs-1,nys:nyn,nxl:nxr) )
3214
3215	CALL get_variable( id_dynamic, 'init_soil_m', &
3216	init_3d%msoil_3d(0:init_3d%nzs-1,nys:nyn,nxl:nxr),&
3217	nxl, nxr, nys, nyn, 0, init_3d%nzs-1 )
3218
3219	ENDIF
3220	init_3d%from_file_msoil = .TRUE.
3221	ENDIF
3222	!
3223	!-- Read soil temperature
3224	IF ( check_existence( var_names, 'init_soil_t' ) ) THEN
3225	!
3226	!-- Read attributes for the fill value and level-of-detail
3227	CALL get_attribute( id_dynamic, char_fill, &
3228	init_3d%fill_tsoil, &
3229	.FALSE., 'init_soil_t' )
3230	CALL get_attribute( id_dynamic, char_lod, &
3231	init_3d%lod_tsoil, &
3232	.FALSE., 'init_soil_t' )
3233	!
3234	!-- level-of-detail 1 - read initialization profile
3235	IF ( init_3d%lod_tsoil == 1 ) THEN
3236	ALLOCATE( init_3d%tsoil_1d(0:init_3d%nzs-1) )
3237
3238	CALL get_variable( id_dynamic, 'init_soil_t', &
3239	init_3d%tsoil_1d(0:init_3d%nzs-1) )
3240
3241	!
3242	!-- level-of-detail 2 - read 3D initialization data
3243	ELSEIF ( init_3d%lod_tsoil == 2 ) THEN
3244	ALLOCATE ( init_3d%tsoil_3d(0:init_3d%nzs-1,nys:nyn,nxl:nxr) )
3245
3246	CALL get_variable( id_dynamic, 'init_soil_t', &
3247	init_3d%tsoil_3d(0:init_3d%nzs-1,nys:nyn,nxl:nxr),&
3248	nxl, nxr, nys, nyn, 0, init_3d%nzs-1 )
3249	ENDIF
3250	init_3d%from_file_tsoil = .TRUE.
3251	ENDIF
3252	!
3253	!-- Close input file
3254	CALL close_input_file( id_dynamic )
3255	#endif
3256	!
3257	!-- End of CPU measurement
3258	CALL cpu_log( log_point_s(85), 'NetCDF input init', 'stop' )
3259
3260	END SUBROUTINE netcdf_data_input_init_lsm
3261
3262	!------------------------------------------------------------------------------!
3263	! Description:
3264	! ------------
3265	!> Reads data at lateral and top boundaries derived from larger-scale model
3266	!> (COSMO) by Inifor.
3267	!------------------------------------------------------------------------------!
3268	SUBROUTINE netcdf_data_input_offline_nesting
3269
3270	USE control_parameters, &
3271	ONLY: bc_dirichlet_l, bc_dirichlet_n, bc_dirichlet_r, &
3272	bc_dirichlet_s, humidity, neutral, nesting_offline, &
3273	time_since_reference_point
3274
3275	USE indices, &
3276	ONLY: nxl, nxlu, nxr, nyn, nys, nysv, nzb, nzt
3277
3278	IMPLICIT NONE
3279
3280	INTEGER(iwp) :: id_dynamic !< NetCDF id of dynamic input file
3281	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
3282	INTEGER(iwp) :: t !< running index time dimension
3283
3284	nest_offl%from_file = MERGE( .TRUE., .FALSE., input_pids_dynamic )
3285	!
3286	!-- Skip input if no forcing from larger-scale models is applied.
3287	IF ( .NOT. nesting_offline ) RETURN
3288
3289	!
3290	!-- CPU measurement
3291	CALL cpu_log( log_point_s(86), 'NetCDF input forcing', 'start' )
3292
3293	#if defined ( __netcdf )
3294	!
3295	!-- Open file in read-only mode
3296	CALL open_read_file( TRIM( input_file_dynamic ) // &
3297	TRIM( coupling_char ), id_dynamic )
3298	!
3299	!-- Initialize INIFOR forcing.
3300	IF ( .NOT. nest_offl%init ) THEN
3301	!
3302	!-- At first, inquire all variable names.
3303	CALL inquire_num_variables( id_dynamic, num_vars )
3304	!
3305	!-- Allocate memory to store variable names.
3306	ALLOCATE( nest_offl%var_names(1:num_vars) )
3307	CALL inquire_variable_names( id_dynamic, nest_offl%var_names )
3308	!
3309	!-- Read time dimension, allocate memory and finally read time array
3310	CALL netcdf_data_input_get_dimension_length( id_dynamic, &
3311	nest_offl%nt, 'time' )
3312
3313	IF ( check_existence( nest_offl%var_names, 'time' ) ) THEN
3314	ALLOCATE( nest_offl%time(0:nest_offl%nt-1) )
3315	CALL get_variable( id_dynamic, 'time', nest_offl%time )
3316	ENDIF
3317	!
3318	!-- Read vertical dimension of scalar und w grid
3319	CALL netcdf_data_input_get_dimension_length( id_dynamic, &
3320	nest_offl%nzu, 'z' )
3321	CALL netcdf_data_input_get_dimension_length( id_dynamic, &
3322	nest_offl%nzw, 'zw' )
3323
3324	IF ( check_existence( nest_offl%var_names, 'z' ) ) THEN
3325	ALLOCATE( nest_offl%zu_atmos(1:nest_offl%nzu) )
3326	CALL get_variable( id_dynamic, 'z', nest_offl%zu_atmos )
3327	ENDIF
3328	IF ( check_existence( nest_offl%var_names, 'zw' ) ) THEN
3329	ALLOCATE( nest_offl%zw_atmos(1:nest_offl%nzw) )
3330	CALL get_variable( id_dynamic, 'zw', nest_offl%zw_atmos )
3331	ENDIF
3332
3333	!
3334	!-- Read surface pressure
3335	IF ( check_existence( nest_offl%var_names, &
3336	'surface_forcing_surface_pressure' ) ) THEN
3337	ALLOCATE( nest_offl%surface_pressure(0:nest_offl%nt-1) )
3338	CALL get_variable( id_dynamic, &
3339	'surface_forcing_surface_pressure', &
3340	nest_offl%surface_pressure )
3341	ENDIF
3342	!
3343	!-- Set control flag to indicate that initialization is already done
3344	nest_offl%init = .TRUE.
3345
3346	ENDIF
3347
3348	!
3349	!-- Obtain time index for current input starting at 0.
3350	!-- @todo: At the moment INIFOR and simulated time correspond
3351	!-- to each other. If required, adjust to daytime.
3352	nest_offl%tind = MINLOC( ABS( nest_offl%time - &
3353	time_since_reference_point ), DIM = 1 ) &
3354	- 1
3355	nest_offl%tind_p = nest_offl%tind + 1
3356	!
3357	!-- Read geostrophic wind components
3358	DO t = nest_offl%tind, nest_offl%tind_p
3359	CALL get_variable_pr( id_dynamic, 'ls_forcing_ug', t+1, &
3360	nest_offl%ug(t-nest_offl%tind,nzb+1:nzt) )
3361	CALL get_variable_pr( id_dynamic, 'ls_forcing_vg', t+1, &
3362	nest_offl%vg(t-nest_offl%tind,nzb+1:nzt) )
3363	ENDDO
3364	!
3365	!-- Read data at lateral and top boundaries. Please note, at left and
3366	!-- right domain boundary, yz-layers are read for u, v, w, pt and q.
3367	!-- For the v-component, the data starts at nysv, while for the other
3368	!-- quantities the data starts at nys. This is equivalent at the north
3369	!-- and south domain boundary for the u-component.
3370	!-- Further, lateral data is not accessed by parallel IO, indicated by the
3371	!-- last passed flag in the subroutine get_variable(). This is because
3372	!-- not every PE participates in this collective blocking read operation.
3373	IF ( bc_dirichlet_l ) THEN
3374	CALL get_variable( id_dynamic, 'ls_forcing_left_u', &
3375	nest_offl%u_left(0:1,nzb+1:nzt,nys:nyn), &
3376	nys+1, nzb+1, nest_offl%tind+1, &
3377	nyn-nys+1, nest_offl%nzu, 2, .FALSE. )
3378
3379	CALL get_variable( id_dynamic, 'ls_forcing_left_v', &
3380	nest_offl%v_left(0:1,nzb+1:nzt,nysv:nyn), &
3381	nysv, nzb+1, nest_offl%tind+1, &
3382	nyn-nysv+1, nest_offl%nzu, 2, .FALSE. )
3383
3384	CALL get_variable( id_dynamic, 'ls_forcing_left_w', &
3385	nest_offl%w_left(0:1,nzb+1:nzt-1,nys:nyn), &
3386	nys+1, nzb+1, nest_offl%tind+1, &
3387	nyn-nys+1, nest_offl%nzw, 2, .FALSE. )
3388
3389	IF ( .NOT. neutral ) THEN
3390	CALL get_variable( id_dynamic, 'ls_forcing_left_pt', &
3391	nest_offl%pt_left(0:1,nzb+1:nzt,nys:nyn), &
3392	nys+1, nzb+1, nest_offl%tind+1, &
3393	nyn-nys+1, nest_offl%nzu, 2, .FALSE. )
3394	ENDIF
3395
3396	IF ( humidity ) THEN
3397	CALL get_variable( id_dynamic, 'ls_forcing_left_qv', &
3398	nest_offl%q_left(0:1,nzb+1:nzt,nys:nyn), &
3399	nys+1, nzb+1, nest_offl%tind+1, &
3400	nyn-nys+1, nest_offl%nzu, 2, .FALSE. )
3401	ENDIF
3402
3403	ENDIF
3404
3405	IF ( bc_dirichlet_r ) THEN
3406	CALL get_variable( id_dynamic, 'ls_forcing_right_u', &
3407	nest_offl%u_right(0:1,nzb+1:nzt,nys:nyn), &
3408	nys+1, nzb+1, nest_offl%tind+1, &
3409	nyn-nys+1, nest_offl%nzu, 2, .FALSE. )
3410
3411	CALL get_variable( id_dynamic, 'ls_forcing_right_v', &
3412	nest_offl%v_right(0:1,nzb+1:nzt,nysv:nyn), &
3413	nysv, nzb+1, nest_offl%tind+1, &
3414	nyn-nysv+1, nest_offl%nzu, 2, .FALSE. )
3415
3416	CALL get_variable( id_dynamic, 'ls_forcing_right_w', &
3417	nest_offl%w_right(0:1,nzb+1:nzt-1,nys:nyn), &
3418	nys+1, nzb+1, nest_offl%tind+1, &
3419	nyn-nys+1, nest_offl%nzw, 2, .FALSE. )
3420
3421	IF ( .NOT. neutral ) THEN
3422	CALL get_variable( id_dynamic, 'ls_forcing_right_pt', &
3423	nest_offl%pt_right(0:1,nzb+1:nzt,nys:nyn), &
3424	nys+1, nzb+1, nest_offl%tind+1, &
3425	nyn-nys+1, nest_offl%nzu, 2, .FALSE. )
3426	ENDIF
3427	IF ( humidity ) THEN
3428	CALL get_variable( id_dynamic, 'ls_forcing_right_qv', &
3429	nest_offl%q_right(0:1,nzb+1:nzt,nys:nyn), &
3430	nys+1, nzb+1, nest_offl%tind+1, &
3431	nyn-nys+1, nest_offl%nzu, 2, .FALSE. )
3432	ENDIF
3433	ENDIF
3434
3435	IF ( bc_dirichlet_n ) THEN
3436
3437	CALL get_variable( id_dynamic, 'ls_forcing_north_u', &
3438	nest_offl%u_north(0:1,nzb+1:nzt,nxlu:nxr), &
3439	nxlu, nzb+1, nest_offl%tind+1, &
3440	nxr-nxlu+1, nest_offl%nzu, 2, .FALSE. )
3441
3442	CALL get_variable( id_dynamic, 'ls_forcing_north_v', &
3443	nest_offl%v_north(0:1,nzb+1:nzt,nxl:nxr), &
3444	nxl+1, nzb+1, nest_offl%tind+1, &
3445	nxr-nxl+1, nest_offl%nzu, 2, .FALSE. )
3446
3447	CALL get_variable( id_dynamic, 'ls_forcing_north_w', &
3448	nest_offl%w_north(0:1,nzb+1:nzt-1,nxl:nxr), &
3449	nxl+1, nzb+1, nest_offl%tind+1, &
3450	nxr-nxl+1, nest_offl%nzw, 2, .FALSE. )
3451
3452	IF ( .NOT. neutral ) THEN
3453	CALL get_variable( id_dynamic, 'ls_forcing_north_pt', &
3454	nest_offl%pt_north(0:1,nzb+1:nzt,nxl:nxr), &
3455	nxl+1, nzb+1, nest_offl%tind+1, &
3456	nxr-nxl+1, nest_offl%nzu, 2, .FALSE. )
3457	ENDIF
3458	IF ( humidity ) THEN
3459	CALL get_variable( id_dynamic, 'ls_forcing_north_qv', &
3460	nest_offl%q_north(0:1,nzb+1:nzt,nxl:nxr), &
3461	nxl+1, nzb+1, nest_offl%tind+1, &
3462	nxr-nxl+1, nest_offl%nzu, 2, .FALSE. )
3463	ENDIF
3464	ENDIF
3465
3466	IF ( bc_dirichlet_s ) THEN
3467	CALL get_variable( id_dynamic, 'ls_forcing_south_u', &
3468	nest_offl%u_south(0:1,nzb+1:nzt,nxlu:nxr), &
3469	nxlu, nzb+1, nest_offl%tind+1, &
3470	nxr-nxlu+1, nest_offl%nzu, 2, .FALSE. )
3471
3472	CALL get_variable( id_dynamic, 'ls_forcing_south_v', &
3473	nest_offl%v_south(0:1,nzb+1:nzt,nxl:nxr), &
3474	nxl+1, nzb+1, nest_offl%tind+1, &
3475	nxr-nxl+1, nest_offl%nzu, 2, .FALSE. )
3476
3477	CALL get_variable( id_dynamic, 'ls_forcing_south_w', &
3478	nest_offl%w_south(0:1,nzb+1:nzt-1,nxl:nxr), &
3479	nxl+1, nzb+1, nest_offl%tind+1, &
3480	nxr-nxl+1, nest_offl%nzw, 2, .FALSE. )
3481
3482	IF ( .NOT. neutral ) THEN
3483	CALL get_variable( id_dynamic, 'ls_forcing_south_pt', &
3484	nest_offl%pt_south(0:1,nzb+1:nzt,nxl:nxr), &
3485	nxl+1, nzb+1, nest_offl%tind+1, &
3486	nxr-nxl+1, nest_offl%nzu, 2, .FALSE. )
3487	ENDIF
3488	IF ( humidity ) THEN
3489	CALL get_variable( id_dynamic, 'ls_forcing_south_qv', &
3490	nest_offl%q_south(0:1,nzb+1:nzt,nxl:nxr), &
3491	nxl+1, nzb+1, nest_offl%tind+1, &
3492	nxr-nxl+1, nest_offl%nzu, 2, .FALSE. )
3493	ENDIF
3494	ENDIF
3495
3496	!
3497	!-- Top boundary
3498	CALL get_variable( id_dynamic, 'ls_forcing_top_u', &
3499	nest_offl%u_top(0:1,nys:nyn,nxlu:nxr), &
3500	nxlu, nys+1, nest_offl%tind+1, &
3501	nxr-nxlu+1, nyn-nys+1, 2, .TRUE. )
3502
3503	CALL get_variable( id_dynamic, 'ls_forcing_top_v', &
3504	nest_offl%v_top(0:1,nysv:nyn,nxl:nxr), &
3505	nxl+1, nysv, nest_offl%tind+1, &
3506	nxr-nxl+1, nyn-nysv+1, 2, .TRUE. )
3507
3508	CALL get_variable( id_dynamic, 'ls_forcing_top_w', &
3509	nest_offl%w_top(0:1,nys:nyn,nxl:nxr), &
3510	nxl+1, nys+1, nest_offl%tind+1, &
3511	nxr-nxl+1, nyn-nys+1, 2, .TRUE. )
3512
3513	IF ( .NOT. neutral ) THEN
3514	CALL get_variable( id_dynamic, 'ls_forcing_top_pt', &
3515	nest_offl%pt_top(0:1,nys:nyn,nxl:nxr), &
3516	nxl+1, nys+1, nest_offl%tind+1, &
3517	nxr-nxl+1, nyn-nys+1, 2, .TRUE. )
3518	ENDIF
3519	IF ( humidity ) THEN
3520	CALL get_variable( id_dynamic, 'ls_forcing_top_qv', &
3521	nest_offl%q_top(0:1,nys:nyn,nxl:nxr), &
3522	nxl+1, nys+1, nest_offl%tind+1, &
3523	nxr-nxl+1, nyn-nys+1, 2, .TRUE. )
3524	ENDIF
3525
3526	!
3527	!-- Close input file
3528	CALL close_input_file( id_dynamic )
3529	#endif
3530	!
3531	!-- End of CPU measurement
3532	CALL cpu_log( log_point_s(86), 'NetCDF input forcing', 'stop' )
3533
3534	END SUBROUTINE netcdf_data_input_offline_nesting
3535
3536
3537	!------------------------------------------------------------------------------!
3538	! Description:
3539	! ------------
3540	!> Checks input file for consistency and minimum requirements.
3541	!------------------------------------------------------------------------------!
3542	SUBROUTINE netcdf_data_input_check_dynamic
3543
3544	USE control_parameters, &
3545	ONLY: initializing_actions, message_string, nesting_offline
3546
3547	IMPLICIT NONE
3548
3549	!
3550	!-- In case of forcing, check whether dynamic input file is present
3551	IF ( .NOT. input_pids_dynamic .AND. nesting_offline ) THEN
3552	message_string = 'nesting_offline = .TRUE. requires dynamic ' // &
3553	'input file ' // &
3554	TRIM( input_file_dynamic ) // TRIM( coupling_char )
3555	CALL message( 'netcdf_data_input_mod', 'PA0546', 1, 2, 0, 6, 0 )
3556	ENDIF
3557	!
3558	!-- Dynamic input file must also be present if initialization via inifor is
3559	!-- prescribed.
3560	IF ( .NOT. input_pids_dynamic .AND. &
3561	TRIM( initializing_actions ) == 'inifor' ) THEN
3562	message_string = 'initializing_actions = inifor requires dynamic ' //&
3563	'input file ' // TRIM( input_file_dynamic ) // &
3564	TRIM( coupling_char )
3565	CALL message( 'netcdf_data_input_mod', 'PA0547', 1, 2, 0, 6, 0 )
3566	ENDIF
3567
3568	END SUBROUTINE netcdf_data_input_check_dynamic
3569
3570	!------------------------------------------------------------------------------!
3571	! Description:
3572	! ------------
3573	!> Checks input file for consistency and minimum requirements.
3574	!------------------------------------------------------------------------------!
3575	SUBROUTINE netcdf_data_input_check_static
3576
3577	USE arrays_3d, &
3578	ONLY: zu
3579
3580	USE control_parameters, &
3581	ONLY: land_surface, message_string, urban_surface
3582
3583	USE grid_variables, &
3584	ONLY: dx, dy
3585
3586	USE indices, &
3587	ONLY: nx, nxl, nxr, ny, nyn, nys
3588
3589	IMPLICIT NONE
3590
3591	INTEGER(iwp) :: i !< loop index along x-direction
3592	INTEGER(iwp) :: j !< loop index along y-direction
3593	INTEGER(iwp) :: n_surf !< number of different surface types at given location
3594
3595	LOGICAL :: check_passed !< flag indicating if a check passed
3596
3597	!
3598	!-- Return if no static input file is available
3599	IF ( .NOT. input_pids_static ) RETURN
3600	!
3601	!-- Check whether dimension size in input file matches the model dimensions
3602	IF ( dim_static%nx-1 /= nx .OR. dim_static%ny-1 /= ny ) THEN
3603	message_string = 'Static input file: horizontal dimension in ' // &
3604	'x- and/or y-direction ' // &
3605	'do not match the respective model dimension'
3606	CALL message( 'netcdf_data_input_mod', 'PA0548', 1, 2, 0, 6, 0 )
3607	ENDIF
3608	!
3609	!-- Check if grid spacing of provided input data matches the respective
3610	!-- grid spacing in the model.
3611	IF ( ABS( dim_static%x(1) - dim_static%x(0) - dx ) > 10E-6_wp .OR. &
3612	ABS( dim_static%y(1) - dim_static%y(0) - dy ) > 10E-6_wp ) THEN
3613	message_string = 'Static input file: horizontal grid spacing ' // &
3614	'in x- and/or y-direction ' // &
3615	'do not match the respective model grid spacing.'
3616	CALL message( 'netcdf_data_input_mod', 'PA0549', 1, 2, 0, 6, 0 )
3617	ENDIF
3618	!
3619	!-- Check for correct dimension of surface_fractions, should run from 0-2.
3620	IF ( surface_fraction_f%from_file ) THEN
3621	IF ( surface_fraction_f%nf-1 > 2 ) THEN
3622	message_string = 'nsurface_fraction must not be larger than 3.'
3623	CALL message( 'netcdf_data_input_mod', 'PA0580', 1, 2, 0, 6, 0 )
3624	ENDIF
3625	ENDIF
3626	!
3627	!-- Check orography for fill-values. For the moment, give an error message.
3628	!-- More advanced methods, e.g. a nearest neighbor algorithm as used in GIS
3629	!-- systems might be implemented later.
3630	!-- Please note, if no terrain height is provided, it is set to 0.
3631	IF ( ANY( terrain_height_f%var == terrain_height_f%fill ) ) THEN
3632	message_string = 'NetCDF variable zt is not ' // &
3633	'allowed to have missing data'
3634	CALL message( 'netcdf_data_input_mod', 'PA0550', 2, 2, myid, 6, 0 )
3635	ENDIF
3636	!
3637	!-- Check for negative terrain heights
3638	IF ( ANY( terrain_height_f%var < 0.0_wp ) ) THEN
3639	message_string = 'NetCDF variable zt is not ' // &
3640	'allowed to have negative values'
3641	CALL message( 'netcdf_data_input_mod', 'PA0551', 2, 2, myid, 6, 0 )
3642	ENDIF
3643	!
3644	!-- If 3D buildings are read, check if building information is consistent
3645	!-- to numeric grid.
3646	IF ( buildings_f%from_file ) THEN
3647	IF ( buildings_f%lod == 2 ) THEN
3648	IF ( buildings_f%nz > SIZE( zu ) ) THEN
3649	message_string = 'Reading 3D building data - too much ' // &
3650	'data points along the vertical coordinate.'
3651	CALL message( 'netcdf_data_input_mod', 'PA0552', 2, 2, 0, 6, 0 )
3652	ENDIF
3653
3654	IF ( ANY( ABS( buildings_f%z(0:buildings_f%nz-1) - &
3655	zu(0:buildings_f%nz-1) ) > 1E-6_wp ) ) THEN
3656	message_string = 'Reading 3D building data - vertical ' // &
3657	'coordinate do not match numeric grid.'
3658	CALL message( 'netcdf_data_input_mod', 'PA0553', 2, 2, myid, 6, 0 )
3659	ENDIF
3660	ENDIF
3661	ENDIF
3662
3663	!
3664	!-- Skip further checks concerning buildings and natural surface properties
3665	!-- if no urban surface and land surface model are applied.
3666	IF ( .NOT. land_surface .AND. .NOT. urban_surface ) RETURN
3667	!
3668	!-- Check for minimum requirement of surface-classification data in case
3669	!-- static input file is used.
3670	IF ( ( .NOT. vegetation_type_f%from_file .OR. &
3671	.NOT. pavement_type_f%from_file .OR. &
3672	.NOT. water_type_f%from_file .OR. &
3673	.NOT. soil_type_f%from_file ) .OR. &
3674	( urban_surface .AND. .NOT. building_type_f%from_file ) ) THEN
3675	message_string = 'Minimum requirement for surface classification ' //&
3676	'is not fulfilled. At least ' // &
3677	'vegetation_type, pavement_type, ' // &
3678	'soil_type and water_type are '// &
3679	'required. If urban-surface model is applied, ' // &
3680	'also building_type ist required'
3681	CALL message( 'netcdf_data_input_mod', 'PA0554', 1, 2, 0, 6, 0 )
3682	ENDIF
3683	!
3684	!-- Check for general availability of input variables.
3685	!-- If vegetation_type is 0 at any location, vegetation_pars as well as
3686	!-- root_area_dens_s are required.
3687	IF ( vegetation_type_f%from_file ) THEN
3688	IF ( ANY( vegetation_type_f%var == 0 ) ) THEN
3689	IF ( .NOT. vegetation_pars_f%from_file ) THEN
3690	message_string = 'If vegetation_type = 0 at any location, ' // &
3691	'vegetation_pars is required'
3692	CALL message( 'netcdf_data_input_mod', 'PA0555', 2, 2, -1, 6, 0 )
3693	ENDIF
3694	IF ( .NOT. root_area_density_lsm_f%from_file ) THEN
3695	message_string = 'If vegetation_type = 0 at any location, ' // &
3696	'root_area_dens_s is required'
3697	CALL message( 'netcdf_data_input_mod', 'PA0556', 2, 2, myid, 6, 0 )
3698	ENDIF
3699	ENDIF
3700	ENDIF
3701	!
3702	!-- If soil_type is zero at any location, soil_pars is required.
3703	IF ( soil_type_f%from_file ) THEN
3704	check_passed = .TRUE.
3705	IF ( ALLOCATED( soil_type_f%var_2d ) ) THEN
3706	IF ( ANY( soil_type_f%var_2d == 0 ) ) THEN
3707	IF ( .NOT. soil_pars_f%from_file ) check_passed = .FALSE.
3708	ENDIF
3709	ELSE
3710	IF ( ANY( soil_type_f%var_3d == 0 ) ) THEN
3711	IF ( .NOT. soil_pars_f%from_file ) check_passed = .FALSE.
3712	ENDIF
3713	ENDIF
3714	IF ( .NOT. check_passed ) THEN
3715	message_string = 'If soil_type = 0 at any location, ' // &
3716	'soil_pars is required'
3717	CALL message( 'netcdf_data_input_mod', 'PA0557', 2, 2, myid, 6, 0 )
3718	ENDIF
3719	ENDIF
3720	!
3721	!-- Buildings require a type in case of urban-surface model.
3722	IF ( buildings_f%from_file .AND. .NOT. building_type_f%from_file ) THEN
3723	message_string = 'If buildings are provided, also building_type ' // &
3724	'is required'
3725	CALL message( 'netcdf_data_input_mod', 'PA0581', 2, 2, myid, 6, 0 )
3726	ENDIF
3727	!
3728	!-- Buildings require an ID.
3729	IF ( buildings_f%from_file .AND. .NOT. building_id_f%from_file ) THEN
3730	message_string = 'If buildings are provided, also building_id ' // &
3731	'is required'
3732	CALL message( 'netcdf_data_input_mod', 'PA0582', 2, 2, myid, 6, 0 )
3733	ENDIF
3734	!
3735	!-- If building_type is zero at any location, building_pars is required.
3736	IF ( building_type_f%from_file ) THEN
3737	IF ( ANY( building_type_f%var == 0 ) ) THEN
3738	IF ( .NOT. building_pars_f%from_file ) THEN
3739	message_string = 'If building_type = 0 at any location, ' // &
3740	'building_pars is required'
3741	CALL message( 'netcdf_data_input_mod', 'PA0558', 2, 2, myid, 6, 0 )
3742	ENDIF
3743	ENDIF
3744	ENDIF
3745	!
3746	!-- If building_type is provided, also building_id is needed (due to the
3747	!-- filtering algorithm).
3748	IF ( building_type_f%from_file .AND. .NOT. building_id_f%from_file ) &
3749	THEN
3750	message_string = 'If building_type is provided, also building_id '// &
3751	'is required'
3752	CALL message( 'netcdf_data_input_mod', 'PA0519', 2, 2, myid, 6, 0 )
3753	ENDIF
3754	!
3755	!-- If albedo_type is zero at any location, albedo_pars is required.
3756	IF ( albedo_type_f%from_file ) THEN
3757	IF ( ANY( albedo_type_f%var == 0 ) ) THEN
3758	IF ( .NOT. albedo_pars_f%from_file ) THEN
3759	message_string = 'If albedo_type = 0 at any location, ' // &
3760	'albedo_pars is required'
3761	CALL message( 'netcdf_data_input_mod', 'PA0559', 2, 2, myid, 6, 0 )
3762	ENDIF
3763	ENDIF
3764	ENDIF
3765	!
3766	!-- If pavement_type is zero at any location, pavement_pars is required.
3767	IF ( pavement_type_f%from_file ) THEN
3768	IF ( ANY( pavement_type_f%var == 0 ) ) THEN
3769	IF ( .NOT. pavement_pars_f%from_file ) THEN
3770	message_string = 'If pavement_type = 0 at any location, ' // &
3771	'pavement_pars is required'
3772	CALL message( 'netcdf_data_input_mod', 'PA0560', 2, 2, myid, 6, 0 )
3773	ENDIF
3774	ENDIF
3775	ENDIF
3776	!
3777	!-- If pavement_type is zero at any location, also pavement_subsurface_pars
3778	!-- is required.
3779	IF ( pavement_type_f%from_file ) THEN
3780	IF ( ANY( pavement_type_f%var == 0 ) ) THEN
3781	IF ( .NOT. pavement_subsurface_pars_f%from_file ) THEN
3782	message_string = 'If pavement_type = 0 at any location, ' // &
3783	'pavement_subsurface_pars is required'
3784	CALL message( 'netcdf_data_input_mod', 'PA0561', 2, 2, myid, 6, 0 )
3785	ENDIF
3786	ENDIF
3787	ENDIF
3788	!
3789	!-- If water_type is zero at any location, water_pars is required.
3790	IF ( water_type_f%from_file ) THEN
3791	IF ( ANY( water_type_f%var == 0 ) ) THEN
3792	IF ( .NOT. water_pars_f%from_file ) THEN
3793	message_string = 'If water_type = 0 at any location, ' // &
3794	'water_pars is required'
3795	CALL message( 'netcdf_data_input_mod', 'PA0562', 2, 2,myid, 6, 0 )
3796	ENDIF
3797	ENDIF
3798	ENDIF
3799	!
3800	!-- Check for local consistency of the input data.
3801	DO i = nxl, nxr
3802	DO j = nys, nyn
3803	!
3804	!-- For each (y,x)-location at least one of the parameters
3805	!-- vegetation_type, pavement_type, building_type, or water_type
3806	!-- must be set to a nonÂmissing value.
3807	IF ( vegetation_type_f%var(j,i) == vegetation_type_f%fill .AND. &
3808	pavement_type_f%var(j,i) == pavement_type_f%fill .AND. &
3809	building_type_f%var(j,i) == building_type_f%fill .AND. &
3810	water_type_f%var(j,i) == water_type_f%fill ) THEN
3811	WRITE( message_string, * ) 'At least one of the parameters '// &
3812	'vegetation_type, pavement_type, ' // &
3813	'building_type, or water_type must be set '// &
3814	'to a non-missing value. Grid point: ', j, i
3815	CALL message( 'netcdf_data_input_mod', 'PA0563', 2, 2, myid, 6, 0 )
3816	ENDIF
3817	!
3818	!-- Note that a soil_type is required for each location (y,x) where
3819	!-- either vegetation_type or pavement_type is a nonÂmissing value.
3820	IF ( ( vegetation_type_f%var(j,i) /= vegetation_type_f%fill .OR. &
3821	pavement_type_f%var(j,i) /= pavement_type_f%fill ) ) THEN
3822	check_passed = .TRUE.
3823	IF ( ALLOCATED( soil_type_f%var_2d ) ) THEN
3824	IF ( soil_type_f%var_2d(j,i) == soil_type_f%fill ) &
3825	check_passed = .FALSE.
3826	ELSE
3827	IF ( ANY( soil_type_f%var_3d(:,j,i) == soil_type_f%fill) ) &
3828	check_passed = .FALSE.
3829	ENDIF
3830
3831	IF ( .NOT. check_passed ) THEN
3832	message_string = 'soil_type is required for each '// &
3833	'location (y,x) where vegetation_type or ' // &
3834	'pavement_type is a non-missing value.'
3835	CALL message( 'netcdf_data_input_mod', 'PA0564', &
3836	2, 2, myid, 6, 0 )
3837	ENDIF
3838	ENDIF
3839	!
3840	!-- Check for consistency of surface fraction. If more than one type
3841	!-- is set, surface fraction need to be given and the sum must not
3842	!-- be larger than 1.
3843	n_surf = 0
3844	IF ( vegetation_type_f%var(j,i) /= vegetation_type_f%fill ) &
3845	n_surf = n_surf + 1
3846	IF ( water_type_f%var(j,i) /= water_type_f%fill ) &
3847	n_surf = n_surf + 1
3848	IF ( pavement_type_f%var(j,i) /= pavement_type_f%fill ) &
3849	n_surf = n_surf + 1
3850
3851	IF ( n_surf > 1 ) THEN
3852	IF ( .NOT. surface_fraction_f%from_file ) THEN
3853	message_string = 'If more than one surface type is ' // &
3854	'given at a location, surface_fraction ' // &
3855	'must be provided.'
3856	CALL message( 'netcdf_data_input_mod', 'PA0565', &
3857	2, 2, myid, 6, 0 )
3858	ELSEIF ( ANY ( surface_fraction_f%frac(:,j,i) == &
3859	surface_fraction_f%fill ) ) THEN
3860	message_string = 'If more than one surface type is ' // &
3861	'given at a location, surface_fraction ' // &
3862	'must be provided.'
3863	CALL message( 'netcdf_data_input_mod', 'PA0565', &
3864	2, 2, myid, 6, 0 )
3865	ENDIF
3866	ENDIF
3867	!
3868	!-- Check for further mismatches. e.g. relative fractions exceed 1 or
3869	!-- vegetation_type is set but surface vegetation fraction is zero,
3870	!-- etc..
3871	IF ( surface_fraction_f%from_file ) THEN
3872	!
3873	!-- Sum of relative fractions must not exceed 1.
3874	IF ( SUM ( surface_fraction_f%frac(0:2,j,i) ) > 1.0_wp ) THEN
3875	message_string = 'surface_fraction must not exceed 1'
3876	CALL message( 'netcdf_data_input_mod', 'PA0566', &
3877	2, 2, myid, 6, 0 )
3878	ENDIF
3879	!
3880	!-- Relative fraction for a type must not be zero at locations where
3881	!-- this type is set.
3882	IF ( &
3883	( vegetation_type_f%var(j,i) /= vegetation_type_f%fill .AND.&
3884	( surface_fraction_f%frac(ind_veg_wall,j,i) == 0.0_wp .OR. &
3885	surface_fraction_f%frac(ind_veg_wall,j,i) == &
3886	surface_fraction_f%fill ) &
3887	) .OR. &
3888	( pavement_type_f%var(j,i) /= pavement_type_f%fill .AND. &
3889	( surface_fraction_f%frac(ind_pav_green,j,i) == 0.0_wp .OR. &
3890	surface_fraction_f%frac(ind_pav_green,j,i) == &
3891	surface_fraction_f%fill ) &
3892	) .OR. &
3893	( water_type_f%var(j,i) /= water_type_f%fill .AND. &
3894	( surface_fraction_f%frac(ind_wat_win,j,i) == 0.0_wp .OR. &
3895	surface_fraction_f%frac(ind_wat_win,j,i) == &
3896	surface_fraction_f%fill ) &
3897	) ) THEN
3898	WRITE( message_string, * ) 'Mismatch in setting of ' // &
3899	'surface_fraction. Vegetation-, pavement-, or '// &
3900	'water surface is given at (i,j) = ( ', i, j, &
3901	' ), but surface fraction is 0 for the given type.'
3902	CALL message( 'netcdf_data_input_mod', 'PA0567', &
3903	2, 2, myid, 6, 0 )
3904	ENDIF
3905	!
3906	!-- Relative fraction for a type must not contain non-zero values
3907	!-- if this type is not set.
3908	IF ( &
3909	( vegetation_type_f%var(j,i) == vegetation_type_f%fill .AND.&
3910	( surface_fraction_f%frac(ind_veg_wall,j,i) /= 0.0_wp .AND. &
3911	surface_fraction_f%frac(ind_veg_wall,j,i) /= &
3912	surface_fraction_f%fill ) &
3913	) .OR. &
3914	( pavement_type_f%var(j,i) == pavement_type_f%fill .AND. &
3915	( surface_fraction_f%frac(ind_pav_green,j,i) /= 0.0_wp .AND. &
3916	surface_fraction_f%frac(ind_pav_green,j,i) /= &
3917	surface_fraction_f%fill ) &
3918	) .OR. &
3919	( water_type_f%var(j,i) == water_type_f%fill .AND. &
3920	( surface_fraction_f%frac(ind_wat_win,j,i) /= 0.0_wp .AND. &
3921	surface_fraction_f%frac(ind_wat_win,j,i) /= &
3922	surface_fraction_f%fill ) &
3923	) ) THEN
3924	WRITE( message_string, * ) 'Mismatch in setting of ' // &
3925	'surface_fraction. Vegetation-, pavement-, or '// &
3926	'water surface is not given at (i,j) = ( ', i, j, &
3927	' ), but surface fraction is not 0 for the ' // &
3928	'given type.'
3929	CALL message( 'netcdf_data_input_mod', 'PA0568', &
3930	2, 2, myid, 6, 0 )
3931	ENDIF
3932	ENDIF
3933	!
3934	!-- Check vegetation_pars. If vegetation_type is 0, all parameters
3935	!-- need to be set, otherwise, single parameters set by
3936	!-- vegetation_type can be overwritten.
3937	IF ( vegetation_type_f%from_file ) THEN
3938	IF ( vegetation_type_f%var(j,i) == 0 ) THEN
3939	IF ( ANY( vegetation_pars_f%pars_xy(:,j,i) == &
3940	vegetation_pars_f%fill ) ) THEN
3941	message_string = 'If vegetation_type(y,x) = 0, all ' // &
3942	'parameters of vegetation_pars at '// &
3943	'this location must be set.'
3944	CALL message( 'netcdf_data_input_mod', 'PA0569', &
3945	2, 2, myid, 6, 0 )
3946	ENDIF
3947	ENDIF
3948	ENDIF
3949	!
3950	!-- Check root distribution. If vegetation_type is 0, all levels must
3951	!-- be set.
3952	IF ( vegetation_type_f%from_file ) THEN
3953	IF ( vegetation_type_f%var(j,i) == 0 ) THEN
3954	IF ( ANY( root_area_density_lsm_f%var(:,j,i) == &
3955	root_area_density_lsm_f%fill ) ) THEN
3956	message_string = 'If vegetation_type(y,x) = 0, all ' // &
3957	'levels of root_area_dens_s ' // &
3958	'must be set at this location.'
3959	CALL message( 'netcdf_data_input_mod', 'PA0570', &
3960	2, 2, myid, 6, 0 )
3961	ENDIF
3962	ENDIF
3963	ENDIF
3964	!
3965	!-- Check soil parameters. If soil_type is 0, all parameters
3966	!-- must be set.
3967	IF ( soil_type_f%from_file ) THEN
3968	check_passed = .TRUE.
3969	IF ( ALLOCATED( soil_type_f%var_2d ) ) THEN
3970	IF ( soil_type_f%var_2d(j,i) == 0 ) THEN
3971	IF ( ANY( soil_pars_f%pars_xy(:,j,i) == &
3972	soil_pars_f%fill ) ) check_passed = .FALSE.
3973	ENDIF
3974	ELSE
3975	IF ( ANY( soil_type_f%var_3d(:,j,i) == 0 ) ) THEN
3976	IF ( ANY( soil_pars_f%pars_xy(:,j,i) == &
3977	soil_pars_f%fill ) ) check_passed = .FALSE.
3978	ENDIF
3979	ENDIF
3980	IF ( .NOT. check_passed ) THEN
3981	message_string = 'If soil_type(y,x) = 0, all levels of ' //&
3982	'soil_pars at this location must be set.'
3983	CALL message( 'netcdf_data_input_mod', 'PA0571', &
3984	2, 2, myid, 6, 0 )
3985	ENDIF
3986	ENDIF
3987
3988	!
3989	!-- Check building parameters. If building_type is 0, all parameters
3990	!-- must be set.
3991	IF ( building_type_f%from_file ) THEN
3992	IF ( building_type_f%var(j,i) == 0 ) THEN
3993	IF ( ANY( building_pars_f%pars_xy(:,j,i) == &
3994	building_pars_f%fill ) ) THEN
3995	message_string = 'If building_type(y,x) = 0, all ' // &
3996	'parameters of building_pars at this '//&
3997	'location must be set.'
3998	CALL message( 'netcdf_data_input_mod', 'PA0572', &
3999	2, 2, myid, 6, 0 )
4000	ENDIF
4001	ENDIF
4002	ENDIF
4003	!
4004	!-- Check if building_type is set at each building and vice versa.
4005	IF ( building_type_f%from_file .AND. buildings_f%from_file ) THEN
4006	IF ( buildings_f%lod == 1 ) THEN
4007	IF ( buildings_f%var_2d(j,i) /= buildings_f%fill1 .AND. &
4008	building_type_f%var(j,i) == building_type_f%fill ) THEN
4009	WRITE( message_string, * ) 'Each location where a ' // &
4010	'building is set requires a type ' // &
4011	'( and vice versa ) in case the ' // &
4012	'urban-surface model is applied. ' // &
4013	'i, j = ', i, j
4014	CALL message( 'netcdf_data_input_mod', 'PA0573', &
4015	2, 2, myid, 6, 0 )
4016	ENDIF
4017	ENDIF
4018	IF ( buildings_f%lod == 2 ) THEN
4019	IF ( ANY( buildings_f%var_3d(:,j,i) == 1 ) .AND. &
4020	building_type_f%var(j,i) == building_type_f%fill ) THEN
4021	WRITE( message_string, * ) 'Each location where a ' // &
4022	'building is set requires a type ' // &
4023	'( and vice versa ) in case the ' // &
4024	'urban-surface model is applied. ' // &
4025	'i, j = ', i, j
4026	CALL message( 'netcdf_data_input_mod', 'PA0573', &
4027	2, 2, myid, 6, 0 )
4028	ENDIF
4029	ENDIF
4030	ENDIF
4031	!
4032	!-- Check if at each location where a building is present also an ID
4033	!-- is set and vice versa.
4034	IF ( buildings_f%from_file ) THEN
4035	IF ( buildings_f%lod == 1 ) THEN
4036	IF ( buildings_f%var_2d(j,i) /= buildings_f%fill1 .AND. &
4037	building_id_f%var(j,i) == building_id_f%fill ) THEN
4038	WRITE( message_string, * ) 'Each location where a ' // &
4039	'building is set requires an ID ' // &
4040	'( and vice versa ). i, j = ', i, j
4041	CALL message( 'netcdf_data_input_mod', 'PA0574', &
4042	2, 2, myid, 6, 0 )
4043	ENDIF
4044	ELSEIF ( buildings_f%lod == 2 ) THEN
4045	IF ( ANY( buildings_f%var_3d(:,j,i) == 1 ) .AND. &
4046	building_id_f%var(j,i) == building_id_f%fill ) THEN
4047	WRITE( message_string, * ) 'Each location where a ' // &
4048	'building is set requires an ID ' // &
4049	'( and vice versa ). i, j = ', i, j
4050	CALL message( 'netcdf_data_input_mod', 'PA0574', &
4051	2, 2, myid, 6, 0 )
4052	ENDIF
4053	ENDIF
4054	ENDIF
4055	!
4056	!-- Check if building ID is set where a bulding is defined.
4057	IF ( buildings_f%from_file ) THEN
4058	IF ( buildings_f%lod == 1 ) THEN
4059	IF ( buildings_f%var_2d(j,i) /= buildings_f%fill1 .AND. &
4060	building_id_f%var(j,i) == building_id_f%fill ) THEN
4061	WRITE( message_string, * ) 'Each building grid point '// &
4062	'requires an ID.', i, j
4063	CALL message( 'netcdf_data_input_mod', 'PA0575', &
4064	2, 2, myid, 6, 0 )
4065	ENDIF
4066	ELSEIF ( buildings_f%lod == 2 ) THEN
4067	IF ( ANY( buildings_f%var_3d(:,j,i) == 1 ) .AND. &
4068	building_id_f%var(j,i) == building_id_f%fill ) THEN
4069	WRITE( message_string, * ) 'Each building grid point '// &
4070	'requires an ID.', i, j
4071	CALL message( 'netcdf_data_input_mod', 'PA0575', &
4072	2, 2, myid, 6, 0 )
4073	ENDIF
4074	ENDIF
4075	ENDIF
4076	!
4077	!-- Check albedo parameters. If albedo_type is 0, all parameters
4078	!-- must be set.
4079	IF ( albedo_type_f%from_file ) THEN
4080	IF ( albedo_type_f%var(j,i) == 0 ) THEN
4081	IF ( ANY( albedo_pars_f%pars_xy(:,j,i) == &
4082	albedo_pars_f%fill ) ) THEN
4083	message_string = 'If albedo_type(y,x) = 0, all ' // &
4084	'parameters of albedo_pars at this ' // &
4085	'location must be set.'
4086	CALL message( 'netcdf_data_input_mod', 'PA0576', &
4087	2, 2, myid, 6, 0 )
4088	ENDIF
4089	ENDIF
4090	ENDIF
4091
4092	!
4093	!-- Check pavement parameters. If pavement_type is 0, all parameters
4094	!-- of pavement_pars must be set at this location.
4095	IF ( pavement_type_f%from_file ) THEN
4096	IF ( pavement_type_f%var(j,i) == 0 ) THEN
4097	IF ( ANY( pavement_pars_f%pars_xy(:,j,i) == &
4098	pavement_pars_f%fill ) ) THEN
4099	message_string = 'If pavement_type(y,x) = 0, all ' // &
4100	'parameters of pavement_pars at this '//&
4101	'location must be set.'
4102	CALL message( 'netcdf_data_input_mod', 'PA0577', &
4103	2, 2, myid, 6, 0 )
4104	ENDIF
4105	ENDIF
4106	ENDIF
4107	!
4108	!-- Check pavement-subsurface parameters. If pavement_type is 0,
4109	!-- all parameters of pavement_subsurface_pars must be set at this
4110	!-- location.
4111	IF ( pavement_type_f%from_file ) THEN
4112	IF ( pavement_type_f%var(j,i) == 0 ) THEN
4113	IF ( ANY( pavement_subsurface_pars_f%pars_xyz(:,:,j,i) == &
4114	pavement_subsurface_pars_f%fill ) ) THEN
4115	message_string = 'If pavement_type(y,x) = 0, all ' // &
4116	'parameters of ' // &
4117	'pavement_subsurface_pars at this '// &
4118	'location must be set.'
4119	CALL message( 'netcdf_data_input_mod', 'PA0578', &
4120	2, 2, myid, 6, 0 )
4121	ENDIF
4122	ENDIF
4123	ENDIF
4124
4125	!
4126	!-- Check water parameters. If water_type is 0, all parameters
4127	!-- must be set at this location.
4128	IF ( water_type_f%from_file ) THEN
4129	IF ( water_type_f%var(j,i) == 0 ) THEN
4130	IF ( ANY( water_pars_f%pars_xy(:,j,i) == &
4131	water_pars_f%fill ) ) THEN
4132	message_string = 'If water_type(y,x) = 0, all ' // &
4133	'parameters of water_pars at this ' // &
4134	'location must be set.'
4135	CALL message( 'netcdf_data_input_mod', 'PA0579', &
4136	2, 2, myid, 6, 0 )
4137	ENDIF
4138	ENDIF
4139	ENDIF
4140
4141	ENDDO
4142	ENDDO
4143
4144	END SUBROUTINE netcdf_data_input_check_static
4145
4146	!------------------------------------------------------------------------------!
4147	! Description:
4148	! ------------
4149	!> Resize 8-bit 2D Integer array: (nys:nyn,nxl:nxr) -> (nysg:nyng,nxlg:nxrg)
4150	!------------------------------------------------------------------------------!
4151	SUBROUTINE resize_array_2d_int8( var, js, je, is, ie )
4152
4153	IMPLICIT NONE
4154
4155	INTEGER(iwp) :: je !< upper index bound along y direction
4156	INTEGER(iwp) :: js !< lower index bound along y direction
4157	INTEGER(iwp) :: ie !< upper index bound along x direction
4158	INTEGER(iwp) :: is !< lower index bound along x direction
4159
4160	INTEGER(KIND=1), DIMENSION(:,:), ALLOCATABLE :: var !< treated variable
4161	INTEGER(KIND=1), DIMENSION(:,:), ALLOCATABLE :: var_tmp !< temporary copy
4162	!
4163	!-- Allocate temporary variable
4164	ALLOCATE( var_tmp(js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4165	!
4166	!-- Temporary copy of the variable
4167	var_tmp(js:je,is:ie) = var(js:je,is:ie)
4168	!
4169	!-- Resize the array
4170	DEALLOCATE( var )
4171	ALLOCATE( var(js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4172	!
4173	!-- Transfer temporary copy back to original array
4174	var(js:je,is:ie) = var_tmp(js:je,is:ie)
4175
4176	END SUBROUTINE resize_array_2d_int8
4177
4178	!------------------------------------------------------------------------------!
4179	! Description:
4180	! ------------
4181	!> Resize 32-bit 2D Integer array: (nys:nyn,nxl:nxr) -> (nysg:nyng,nxlg:nxrg)
4182	!------------------------------------------------------------------------------!
4183	SUBROUTINE resize_array_2d_int32( var, js, je, is, ie )
4184
4185	IMPLICIT NONE
4186
4187	INTEGER(iwp) :: je !< upper index bound along y direction
4188	INTEGER(iwp) :: js !< lower index bound along y direction
4189	INTEGER(iwp) :: ie !< upper index bound along x direction
4190	INTEGER(iwp) :: is !< lower index bound along x direction
4191
4192	INTEGER(iwp), DIMENSION(:,:), ALLOCATABLE :: var !< treated variable
4193	INTEGER(iwp), DIMENSION(:,:), ALLOCATABLE :: var_tmp !< temporary copy
4194	!
4195	!-- Allocate temporary variable
4196	ALLOCATE( var_tmp(js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4197	!
4198	!-- Temporary copy of the variable
4199	var_tmp(js:je,is:ie) = var(js:je,is:ie)
4200	!
4201	!-- Resize the array
4202	DEALLOCATE( var )
4203	ALLOCATE( var(js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4204	!
4205	!-- Transfer temporary copy back to original array
4206	var(js:je,is:ie) = var_tmp(js:je,is:ie)
4207
4208	END SUBROUTINE resize_array_2d_int32
4209
4210	!------------------------------------------------------------------------------!
4211	! Description:
4212	! ------------
4213	!> Resize 8-bit 3D Integer array: (:,nys:nyn,nxl:nxr) -> (:,nysg:nyng,nxlg:nxrg)
4214	!------------------------------------------------------------------------------!
4215	SUBROUTINE resize_array_3d_int8( var, ks, ke, js, je, is, ie )
4216
4217	IMPLICIT NONE
4218
4219	INTEGER(iwp) :: je !< upper index bound along y direction
4220	INTEGER(iwp) :: js !< lower index bound along y direction
4221	INTEGER(iwp) :: ie !< upper index bound along x direction
4222	INTEGER(iwp) :: is !< lower index bound along x direction
4223	INTEGER(iwp) :: ke !< upper bound of treated array in z-direction
4224	INTEGER(iwp) :: ks !< lower bound of treated array in z-direction
4225
4226	INTEGER(KIND=1), DIMENSION(:,:,:), ALLOCATABLE :: var !< treated variable
4227	INTEGER(KIND=1), DIMENSION(:,:,:), ALLOCATABLE :: var_tmp !< temporary copy
4228	!
4229	!-- Allocate temporary variable
4230	ALLOCATE( var_tmp(ks:ke,js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4231	!
4232	!-- Temporary copy of the variable
4233	var_tmp(ks:ke,js:je,is:ie) = var(ks:ke,js:je,is:ie)
4234	!
4235	!-- Resize the array
4236	DEALLOCATE( var )
4237	ALLOCATE( var(ks:ke,js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4238	!
4239	!-- Transfer temporary copy back to original array
4240	var(ks:ke,js:je,is:ie) = var_tmp(ks:ke,js:je,is:ie)
4241
4242	END SUBROUTINE resize_array_3d_int8
4243
4244	!------------------------------------------------------------------------------!
4245	! Description:
4246	! ------------
4247	!> Resize 3D Real array: (:,nys:nyn,nxl:nxr) -> (:,nysg:nyng,nxlg:nxrg)
4248	!------------------------------------------------------------------------------!
4249	SUBROUTINE resize_array_3d_real( var, ks, ke, js, je, is, ie )
4250
4251	IMPLICIT NONE
4252
4253	INTEGER(iwp) :: je !< upper index bound along y direction
4254	INTEGER(iwp) :: js !< lower index bound along y direction
4255	INTEGER(iwp) :: ie !< upper index bound along x direction
4256	INTEGER(iwp) :: is !< lower index bound along x direction
4257	INTEGER(iwp) :: ke !< upper bound of treated array in z-direction
4258	INTEGER(iwp) :: ks !< lower bound of treated array in z-direction
4259
4260	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: var !< treated variable
4261	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: var_tmp !< temporary copy
4262	!
4263	!-- Allocate temporary variable
4264	ALLOCATE( var_tmp(ks:ke,js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4265	!
4266	!-- Temporary copy of the variable
4267	var_tmp(ks:ke,js:je,is:ie) = var(ks:ke,js:je,is:ie)
4268	!
4269	!-- Resize the array
4270	DEALLOCATE( var )
4271	ALLOCATE( var(ks:ke,js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4272	!
4273	!-- Transfer temporary copy back to original array
4274	var(ks:ke,js:je,is:ie) = var_tmp(ks:ke,js:je,is:ie)
4275
4276	END SUBROUTINE resize_array_3d_real
4277
4278	!------------------------------------------------------------------------------!
4279	! Description:
4280	! ------------
4281	!> Resize 4D Real array: (:,:,nys:nyn,nxl:nxr) -> (:,nysg:nyng,nxlg:nxrg)
4282	!------------------------------------------------------------------------------!
4283	SUBROUTINE resize_array_4d_real( var, k1s, k1e, k2s, k2e, js, je, is, ie )
4284
4285	IMPLICIT NONE
4286
4287	INTEGER(iwp) :: je !< upper index bound along y direction
4288	INTEGER(iwp) :: js !< lower index bound along y direction
4289	INTEGER(iwp) :: ie !< upper index bound along x direction
4290	INTEGER(iwp) :: is !< lower index bound along x direction
4291	INTEGER(iwp) :: k1e !< upper bound of treated array in z-direction
4292	INTEGER(iwp) :: k1s !< lower bound of treated array in z-direction
4293	INTEGER(iwp) :: k2e !< upper bound of treated array along parameter space
4294	INTEGER(iwp) :: k2s !< lower bound of treated array along parameter space
4295
4296	REAL(wp), DIMENSION(:,:,:,:), ALLOCATABLE :: var !< treated variable
4297	REAL(wp), DIMENSION(:,:,:,:), ALLOCATABLE :: var_tmp !< temporary copy
4298	!
4299	!-- Allocate temporary variable
4300	ALLOCATE( var_tmp(k1s<