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netcdf_data_input_mod.f90 @ 3542

Last change on this file since 3542 was 3542, checked in by suehring, 4 years ago
Revise ghost point exchange in netcdf-data input; new routine for ghost point exchange of 1-Byte Integer; Remove tabs in chemistry model which prevent compilation with gfortran and debug options
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File size: 268.7 KB

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1	!> @file netcdf_data_input_mod.f90
2	!------------------------------------------------------------------------------!
3	! This file is part of the PALM model system.
4	!
5	! PALM is free software: you can redistribute it and/or modify it under the
6	! terms of the GNU General Public License as published by the Free Software
7	! Foundation, either version 3 of the License, or (at your option) any later
8	! version.
9	!
10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
13	!
14	! You should have received a copy of the GNU General Public License along with
15	! PALM. If not, see <http://www.gnu.org/licenses/>.
16	!
17	! Copyright 1997-2018 Leibniz Universitaet Hannover
18	!------------------------------------------------------------------------------!
19	!
20	! Current revisions:
21	! -----------------
22	! Revise ghost point exchange and resizing of input variables
23	!
24	! Former revisions:
25	! -----------------
26	! $Id: netcdf_data_input_mod.f90 3542 2018-11-20 17:04:13Z suehring $
27	! - read optional attributes from file
28	! - set default origin_time
29	!
30	! 3518 2018-11-12 18:10:23Z suehring
31	! Additional checks
32	!
33	! 3516 2018-11-12 15:49:39Z gronemeier
34	! bugfix: - difference in z coordinate between file and PALM must be <1e-6
35	! - output of error 553 for all PEs
36	!
37	! 3498 2018-11-07 10:53:03Z gronemeier
38	! Bugfix: print error message by processor which encounters the error
39	!
40	! 3485 2018-11-03 17:09:40Z gronemeier
41	! - get central meridian from origin_lon if crs does not exist
42	! - set default origin_lon to 0
43	!
44	! 3483 2018-11-02 14:19:26Z raasch
45	! bugfix: misplaced directives for netCDF fixed
46	!
47	! 3474 2018-10-30 21:07:39Z kanani
48	! Add UV exposure model input (Schrempf)
49	!
50	! 3472 2018-10-30 20:43:50Z suehring
51	! Salsa implemented
52	!
53	! 3464 2018-10-30 18:08:55Z kanani
54	! Define coordinate reference system (crs) and read from input dataset
55	! Revise default values for reference coordinates
56	!
57	! 3459 2018-10-30 15:04:11Z gronemeier
58	! from chemistry branch r3443, banzhafs, Russo:
59	! Uncommented lines on dimension of surface_fractions
60	! Removed par_emis_time_factor variable, moved to chem_emissions_mod
61	! Initialized nspec and other emission variables at time of declaration
62	! Modified EXPERT mode to PRE-PROCESSED mode
63	! Introduced Chemistry static netcdf file
64	! Added the routine for reading-in netcdf data for chemistry
65	! Added routines to get_variable interface specific for chemistry files
66	!
67	! 3429 2018-10-25 13:04:23Z knoop
68	! add default values of origin_x/y/z
69	!
70	! 3404 2018-10-23 13:29:11Z suehring
71	! Consider time-dependent geostrophic wind components in offline nesting
72	!
73	! 3376 2018-10-19 10:15:32Z suehring
74	! Additional check for consistent building initialization implemented
75	!
76	! 3347 2018-10-15 14:21:08Z suehring
77	! Subroutine renamed
78	!
79	! 3257 2018-09-17 17:11:46Z suehring
80	! (from branch resler)
81	! Formatting
82	!
83	! 3298 2018-10-02 12:21:11Z kanani
84	! Modified EXPERT mode to PRE-PROCESSED mode (Russo)
85	! Introduced Chemistry static netcdf file (Russo)
86	! Added the routine for reading-in netcdf data for chemistry (Russo)
87	! Added routines to get_variable interface specific for chemistry files (Russo)
88	!
89	! 3257 2018-09-17 17:11:46Z suehring
90	! Adjust checks for building_type and building_id, which is necessary after
91	! topography filtering (building_type and id can be modified by the filtering).
92	!
93	! 3254 2018-09-17 10:53:57Z suehring
94	! Additional check for surface_fractions and and checks for building_id and
95	! building_type extended.
96	!
97	! 3241 2018-09-12 15:02:00Z raasch
98	! unused variables removed
99	!
100	! 3215 2018-08-29 09:58:59Z suehring
101	! - Separate input of soil properties from input of atmospheric data. This
102	! enables input of soil properties also in child domains without any
103	! dependence on atmospheric input
104	! - Check for missing initial 1D/3D data in dynamic input file
105	! - Revise checks for matching grid spacing in model and input file
106	! - Bugfix, add netcdf4_parallel directive for collective read operation
107	! - Revise error message numbers
108	!
109	! 3209 2018-08-27 16:58:37Z suehring
110	! Read zsoil dimension length only if soil variables are provided
111	!
112	! 3183 2018-07-27 14:25:55Z suehring
113	! Adjust input of dynamic driver according to revised Inifor version.
114	! Replace simulated_time by time_since_reference_point.
115	! Rename variables in mesoscale-offline nesting mode.
116	!
117	! 3182 2018-07-27 13:36:03Z suehring
118	! Slightly revise check for surface_fraction in order to check only the relevant
119	! fractions
120	!
121	! 3103 2018-07-04 17:30:52Z suehring
122	! New check for negative terrain heights
123	!
124	! 3089 2018-06-27 13:20:38Z suehring
125	! Revise call for message routine in case of local data inconsistencies.
126	!
127	! 3054 2018-06-01 16:08:59Z gronemeier
128	! Bugfix: force an MPI abort if errors occur while reading building heights
129	! from ASCII file
130	!
131	! 3053 2018-06-01 12:59:07Z suehring
132	! Revise checks for variable surface_fraction
133	!
134	! 3051 2018-05-30 17:43:55Z suehring
135	! - Speed-up NetCDF input
136	! - Revise input routines and remove NetCDF input via IO-blocks since this is
137	! not working in parallel mode in case blocking collective read operations
138	! are done
139	! - Temporarily revoke renaming of input variables in dynamic driver (tend_ug,
140	! tend_vg, zsoil) in order to keep dynamic input file working with current
141	! model version
142	! - More detailed error messages created
143	!
144	! 3045 2018-05-28 07:55:41Z Giersch
145	! Error messages revised
146	!
147	! 3041 2018-05-25 10:39:54Z gronemeier
148	! Add data type for global file attributes
149	! Add read of global attributes of static driver
150	!
151	! 3037 2018-05-24 10:39:29Z gronemeier
152	! renamed 'depth' to 'zsoil'
153	!
154	! 3036 2018-05-24 10:18:26Z gronemeier
155	! Revision of input vars according to UC2 data standard
156	! - renamed 'orography_2D' to 'zt'
157	! - renamed 'buildings_2D' to 'buildings_2d'
158	! - renamed 'buildings_3D' to 'buildings_3d'
159	! - renamed 'leaf_are_density' to 'lad'
160	! - renamed 'basal_are_density' to 'bad'
161	! - renamed 'root_are_density_lad' to 'root_area_dens_r'
162	! - renamed 'root_are_density_lsm' to 'root_area_dens_s'
163	! - renamed 'ls_forcing_ug' to 'tend_ug'
164	! - renamed 'ls_forcing_vg' to 'tend_vg'
165	!
166	! 3019 2018-05-13 07:05:43Z maronga
167	! Improved reading speed of large NetCDF files
168	!
169	! 2963 2018-04-12 14:47:44Z suehring
170	! - Revise checks for static input variables.
171	! - Introduce index for vegetation/wall, pavement/green-wall and water/window
172	! surfaces, for clearer access of surface fraction, albedo, emissivity, etc. .
173	!
174	! 2958 2018-04-11 15:38:13Z suehring
175	! Synchronize longitude and latitude between nested model domains, values are
176	! taken from the root model.
177	!
178	! 2955 2018-04-09 15:14:01Z suehring
179	! Extend checks for consistent setting of buildings, its ID and type.
180	! Add log-points to measure CPU time of NetCDF data input.
181	!
182	! 2953 2018-04-09 11:26:02Z suehring
183	! Bugfix in checks for initialization data
184	!
185	! 2947 2018-04-04 18:01:41Z suehring
186	! Checks for dynamic input revised
187	!
188	! 2946 2018-04-04 17:01:23Z suehring
189	! Bugfix for revision 2945, perform checks only if dynamic input file is
190	! available.
191	!
192	! 2945 2018-04-04 16:27:14Z suehring
193	! - Mimic for topography input slightly revised, in order to enable consistency
194	! checks
195	! - Add checks for dimensions in dynamic input file and move already existing
196	! checks
197	!
198	! 2938 2018-03-27 15:52:42Z suehring
199	! Initial read of geostrophic wind components from dynamic driver.
200	!
201	! 2773 2018-01-30 14:12:54Z suehring
202	! Revise checks for surface_fraction.
203	!
204	! 2925 2018-03-23 14:54:11Z suehring
205	! Check for further inconsistent settings of surface_fractions.
206	! Some messages slightly rephrased and error numbers renamed.
207	!
208	! 2898 2018-03-15 13:03:01Z suehring
209	! Check if each building has a type. Further, check if dimensions in static
210	! input file match the model dimensions.
211	!
212	! 2897 2018-03-15 11:47:16Z suehring
213	! Relax restrictions for topography input, terrain and building heights can be
214	! input separately and are not mandatory any more.
215	!
216	! 2874 2018-03-13 10:55:42Z knoop
217	! Bugfix: wrong placement of netcdf cpp-macros fixed
218	!
219	! 2794 2018-02-07 14:09:43Z knoop
220	! Check if 3D building input is consistent to numeric grid.
221	!
222	! 2773 2018-01-30 14:12:54Z suehring
223	! - Enable initialization with 3D topography.
224	! - Move check for correct initialization in nesting mode to check_parameters.
225	!
226	! 2772 2018-01-29 13:10:35Z suehring
227	! Initialization of simulation independent on land-surface model.
228	!
229	! 2746 2018-01-15 12:06:04Z suehring
230	! Read plant-canopy variables independently on land-surface model usage
231	!
232	! 2718 2018-01-02 08:49:38Z maronga
233	! Corrected "Former revisions" section
234	!
235	! 2711 2017-12-20 17:04:49Z suehring
236	! Rename subroutine close_file to avoid double-naming.
237	!
238	! 2700 2017-12-15 14:12:35Z suehring
239	!
240	! 2696 2017-12-14 17:12:51Z kanani
241	! Initial revision (suehring)
242	!
243	!
244	!
245	!
246	! Authors:
247	! --------
248	! @author Matthias Suehring
249	!
250	! Description:
251	! ------------
252	!> Modulue contains routines to input data according to Palm input data
253	!> standart using dynamic and static input files.
254	!> @todo - Chemistry: revise reading of netcdf file and ajdust formatting according to standard!!!
255	!> @todo - Order input alphabetically
256	!> @todo - Revise error messages and error numbers
257	!> @todo - Input of missing quantities (chemical species, emission rates)
258	!> @todo - Defninition and input of still missing variable attributes
259	!> @todo - Input of initial geostrophic wind profiles with cyclic conditions.
260	!------------------------------------------------------------------------------!
261	MODULE netcdf_data_input_mod
262
263	USE control_parameters, &
264	ONLY: coupling_char, io_blocks, io_group
265
266	USE cpulog, &
267	ONLY: cpu_log, log_point_s
268
269	USE indices, &
270	ONLY: nbgp
271
272	USE kinds
273
274	#if defined ( __netcdf )
275	USE NETCDF
276	#endif
277
278	USE pegrid
279
280	USE surface_mod, &
281	ONLY: ind_pav_green, ind_veg_wall, ind_wat_win
282	!
283	!-- Define type for dimensions.
284	TYPE dims_xy
285	INTEGER(iwp) :: nx !< dimension length in x
286	INTEGER(iwp) :: ny !< dimension length in y
287	INTEGER(iwp) :: nz !< dimension length in z
288	REAL(wp), DIMENSION(:), ALLOCATABLE :: x !< dimension array in x
289	REAL(wp), DIMENSION(:), ALLOCATABLE :: y !< dimension array in y
290	REAL(wp), DIMENSION(:), ALLOCATABLE :: z !< dimension array in z
291	END TYPE dims_xy
292	!
293	!-- Define data type for nesting in larger-scale models like COSMO.
294	!-- Data type comprises u, v, w, pt, and q at lateral and top boundaries.
295	TYPE nest_offl_type
296
297	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names
298
299	INTEGER(iwp) :: nt !< number of time levels in dynamic input file
300	INTEGER(iwp) :: nzu !< number of vertical levels on scalar grid in dynamic input file
301	INTEGER(iwp) :: nzw !< number of vertical levels on w grid in dynamic input file
302	INTEGER(iwp) :: tind !< time index for reference time in mesoscale-offline nesting
303	INTEGER(iwp) :: tind_p !< time index for following time in mesoscale-offline nesting
304
305	LOGICAL :: init = .FALSE.
306	LOGICAL :: from_file = .FALSE.
307
308	REAL(wp), DIMENSION(:), ALLOCATABLE :: surface_pressure !< time dependent surface pressure
309	REAL(wp), DIMENSION(:), ALLOCATABLE :: time !< time levels in dynamic input file
310	REAL(wp), DIMENSION(:), ALLOCATABLE :: zu_atmos !< vertical levels at scalar grid in dynamic input file
311	REAL(wp), DIMENSION(:), ALLOCATABLE :: zw_atmos !< vertical levels at w grid in dynamic input file
312
313	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: ug !< domain-averaged geostrophic component
314	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: vg !< domain-averaged geostrophic component
315
316	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: u_left !< u-component at left boundary
317	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: v_left !< v-component at left boundary
318	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: w_left !< w-component at left boundary
319	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: q_left !< mixing ratio at left boundary
320	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: pt_left !< potentital temperautre at left boundary
321
322	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: u_north !< u-component at north boundary
323	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: v_north !< v-component at north boundary
324	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: w_north !< w-component at north boundary
325	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: q_north !< mixing ratio at north boundary
326	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: pt_north !< potentital temperautre at north boundary
327
328	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: u_right !< u-component at right boundary
329	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: v_right !< v-component at right boundary
330	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: w_right !< w-component at right boundary
331	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: q_right !< mixing ratio at right boundary
332	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: pt_right !< potentital temperautre at right boundary
333
334	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: u_south !< u-component at south boundary
335	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: v_south !< v-component at south boundary
336	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: w_south !< w-component at south boundary
337	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: q_south !< mixing ratio at south boundary
338	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: pt_south !< potentital temperautre at south boundary
339
340	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: u_top !< u-component at top boundary
341	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: v_top !< v-component at top boundary
342	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: w_top !< w-component at top boundary
343	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: q_top !< mixing ratio at top boundary
344	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: pt_top !< potentital temperautre at top boundary
345
346	END TYPE nest_offl_type
347
348	TYPE init_type
349
350	CHARACTER(LEN=23) :: origin_time = '2000-01-01 00:00:00 +00' !< reference time of input data
351
352	INTEGER(iwp) :: lod_msoil !< level of detail - soil moisture
353	INTEGER(iwp) :: lod_pt !< level of detail - pt
354	INTEGER(iwp) :: lod_q !< level of detail - q
355	INTEGER(iwp) :: lod_tsoil !< level of detail - soil temperature
356	INTEGER(iwp) :: lod_u !< level of detail - u-component
357	INTEGER(iwp) :: lod_v !< level of detail - v-component
358	INTEGER(iwp) :: lod_w !< level of detail - w-component
359	INTEGER(iwp) :: nx !< number of scalar grid points along x in dynamic input file
360	INTEGER(iwp) :: nxu !< number of u grid points along x in dynamic input file
361	INTEGER(iwp) :: ny !< number of scalar grid points along y in dynamic input file
362	INTEGER(iwp) :: nyv !< number of v grid points along y in dynamic input file
363	INTEGER(iwp) :: nzs !< number of vertical soil levels in dynamic input file
364	INTEGER(iwp) :: nzu !< number of vertical levels on scalar grid in dynamic input file
365	INTEGER(iwp) :: nzw !< number of vertical levels on w grid in dynamic input file
366
367	LOGICAL :: from_file_msoil = .FALSE. !< flag indicating whether soil moisture is already initialized from file
368	LOGICAL :: from_file_pt = .FALSE. !< flag indicating whether pt is already initialized from file
369	LOGICAL :: from_file_q = .FALSE. !< flag indicating whether q is already initialized from file
370	LOGICAL :: from_file_tsoil = .FALSE. !< flag indicating whether soil temperature is already initialized from file
371	LOGICAL :: from_file_u = .FALSE. !< flag indicating whether u is already initialized from file
372	LOGICAL :: from_file_ug = .FALSE. !< flag indicating whether ug is already initialized from file
373	LOGICAL :: from_file_v = .FALSE. !< flag indicating whether v is already initialized from file
374	LOGICAL :: from_file_vg = .FALSE. !< flag indicating whether ug is already initialized from file
375	LOGICAL :: from_file_w = .FALSE. !< flag indicating whether w is already initialized from file
376
377	REAL(wp) :: fill_msoil !< fill value for soil moisture
378	REAL(wp) :: fill_pt !< fill value for pt
379	REAL(wp) :: fill_q !< fill value for q
380	REAL(wp) :: fill_tsoil !< fill value for soil temperature
381	REAL(wp) :: fill_u !< fill value for u
382	REAL(wp) :: fill_v !< fill value for v
383	REAL(wp) :: fill_w !< fill value for w
384	REAL(wp) :: latitude = 0.0_wp !< latitude of the lower left corner
385	REAL(wp) :: longitude = 0.0_wp !< longitude of the lower left corner
386	REAL(wp) :: origin_x = 500000.0_wp !< UTM easting of the lower left corner
387	REAL(wp) :: origin_y = 0.0_wp !< UTM northing of the lower left corner
388	REAL(wp) :: origin_z = 0.0_wp !< reference height of input data
389	REAL(wp) :: rotation_angle = 0.0_wp !< rotation angle of input data
390
391	REAL(wp), DIMENSION(:), ALLOCATABLE :: msoil_1d !< initial vertical profile of soil moisture
392	REAL(wp), DIMENSION(:), ALLOCATABLE :: pt_init !< initial vertical profile of pt
393	REAL(wp), DIMENSION(:), ALLOCATABLE :: q_init !< initial vertical profile of q
394	REAL(wp), DIMENSION(:), ALLOCATABLE :: tsoil_1d !< initial vertical profile of soil temperature
395	REAL(wp), DIMENSION(:), ALLOCATABLE :: u_init !< initial vertical profile of u
396	REAL(wp), DIMENSION(:), ALLOCATABLE :: ug_init !< initial vertical profile of ug
397	REAL(wp), DIMENSION(:), ALLOCATABLE :: v_init !< initial vertical profile of v
398	REAL(wp), DIMENSION(:), ALLOCATABLE :: vg_init !< initial vertical profile of ug
399	REAL(wp), DIMENSION(:), ALLOCATABLE :: w_init !< initial vertical profile of w
400	REAL(wp), DIMENSION(:), ALLOCATABLE :: z_soil !< vertical levels in soil in dynamic input file, used for interpolation
401	REAL(wp), DIMENSION(:), ALLOCATABLE :: zu_atmos !< vertical levels at scalar grid in dynamic input file, used for interpolation
402	REAL(wp), DIMENSION(:), ALLOCATABLE :: zw_atmos !< vertical levels at w grid in dynamic input file, used for interpolation
403
404
405	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: msoil_3d !< initial 3d soil moisture provide by Inifor and interpolated onto soil grid
406	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: tsoil_3d !< initial 3d soil temperature provide by Inifor and interpolated onto soil grid
407
408	END TYPE init_type
409
410	!-- Data type for the general information of chemistry emissions, do not dependent on the particular chemical species
411	TYPE chem_emis_att_type
412
413	!-DIMENSIONS
414	INTEGER(iwp) :: nspec=0 !< number of chem species for which emission values are provided
415	INTEGER(iwp) :: ncat=0 !< number of emission categories
416	INTEGER(iwp) :: nvoc=0 !< number of VOCs components
417	INTEGER(iwp) :: npm=0 !< number of PMs components
418	INTEGER(iwp) :: nnox=2 !< number of NOx components: NO and NO2
419	INTEGER(iwp) :: nsox=2 !< number of SOx components: SO and SO4
420	INTEGER(iwp) :: nhoursyear !< number of hours of a specific year in the HOURLY mode
421	! of the default mode
422	INTEGER(iwp) :: nmonthdayhour !< number of month days and hours in the MDH mode
423	! of the default mode
424	INTEGER(iwp) :: dt_emission !< Number of emissions timesteps for one year
425	! in the pre-processed emissions case
426	!-- 1d emission input variables
427	CHARACTER (LEN=25),ALLOCATABLE, DIMENSION(:) :: pm_name !< Names of PMs components
428	CHARACTER (LEN=25),ALLOCATABLE, DIMENSION(:) :: cat_name !< Emission categories names
429	CHARACTER (LEN=25),ALLOCATABLE, DIMENSION(:) :: species_name !< Names of emission chemical species
430	CHARACTER (LEN=25),ALLOCATABLE, DIMENSION(:) :: voc_name !< Names of VOCs components
431	CHARACTER (LEN=25) :: units !< Units
432
433	INTEGER(iwp) :: i_hour !< indices for assigning the emission values at different timesteps
434	INTEGER(iwp),ALLOCATABLE, DIMENSION(:) :: cat_index !< Index of emission categories
435	INTEGER(iwp),ALLOCATABLE, DIMENSION(:) :: species_index !< Index of emission chem species
436
437	REAL(wp),ALLOCATABLE, DIMENSION(:) :: xm !< Molecular masses of emission chem species
438
439	!-- 2d emission input variables
440	REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: hourly_emis_time_factor !< Time factors for HOURLY emissions (DEFAULT mode)
441	REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: mdh_emis_time_factor !< Time factors for MDH emissions (DEFAULT mode)
442	REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: nox_comp !< Composition of NO and NO2
443	REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: sox_comp !< Composition of SO2 and SO4
444	REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: voc_comp !< Composition of different VOC components (number not fixed)
445
446	!-- 3d emission input variables
447	REAL(wp),ALLOCATABLE, DIMENSION(:,:,:) :: pm_comp !< Composition of different PMs components (number not fixed)
448
449	END TYPE chem_emis_att_type
450
451
452	!-- Data type for the values of chemistry emissions ERUSSO
453	TYPE chem_emis_val_type
454
455	!REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: stack_height !< stack height
456
457	!-- 3d emission input variables
458	REAL(wp),ALLOCATABLE, DIMENSION(:,:,:) :: default_emission_data !< Input Values emissions DEFAULT mode
459
460	!-- 4d emission input variables
461	REAL(wp),ALLOCATABLE, DIMENSION(:,:,:,:) :: preproc_emission_data !< Input Values emissions PRE-PROCESSED mode
462
463	END TYPE chem_emis_val_type
464
465	!
466	!-- Define data structures for different input data types.
467	!-- 8-bit Integer 2D
468	TYPE int_2d_8bit
469	INTEGER(KIND=1) :: fill = -127 !< fill value
470	INTEGER(KIND=1), DIMENSION(:,:), ALLOCATABLE :: var !< respective variable
471
472	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
473	END TYPE int_2d_8bit
474	!
475	!-- 8-bit Integer 3D
476	TYPE int_3d_8bit
477	INTEGER(KIND=1) :: fill = -127 !< fill value
478	INTEGER(KIND=1), DIMENSION(:,:,:), ALLOCATABLE :: var_3d !< respective variable
479
480	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
481	END TYPE int_3d_8bit
482	!
483	!-- 32-bit Integer 2D
484	TYPE int_2d_32bit
485	INTEGER(iwp) :: fill = -9999 !< fill value
486	INTEGER(iwp), DIMENSION(:,:), ALLOCATABLE :: var !< respective variable
487
488	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
489	END TYPE int_2d_32bit
490
491	!
492	!-- Define data type to read 2D real variables
493	TYPE real_2d
494	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
495
496	REAL(wp) :: fill = -9999.9_wp !< fill value
497	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: var !< respective variable
498	END TYPE real_2d
499
500	!
501	!-- Define data type to read 3D real variables
502	TYPE real_3d
503	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
504
505	INTEGER(iwp) :: nz !< number of grid points along vertical dimension
506
507	REAL(wp) :: fill = -9999.9_wp !< fill value
508	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: var !< respective variable
509	END TYPE real_3d
510	!
511	!-- Define data structure where the dimension and type of the input depends
512	!-- on the given level of detail.
513	!-- For buildings, the input is either 2D float, or 3d byte.
514	TYPE build_in
515	INTEGER(iwp) :: lod = 1 !< level of detail
516	INTEGER(KIND=1) :: fill2 = -127 !< fill value for lod = 2
517	INTEGER(iwp) :: nz !< number of vertical layers in file
518	INTEGER(KIND=1), DIMENSION(:,:,:), ALLOCATABLE :: var_3d !< 3d variable (lod = 2)
519
520	REAL(wp), DIMENSION(:), ALLOCATABLE :: z !< vertical coordinate for 3D building, used for consistency check
521
522	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
523
524	REAL(wp) :: fill1 = -9999.9_wp !< fill values for lod = 1
525	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: var_2d !< 2d variable (lod = 1)
526	END TYPE build_in
527
528	!
529	!-- For soil_type, the input is either 2D or 3D one-byte integer.
530	TYPE soil_in
531	INTEGER(iwp) :: lod = 1 !< level of detail
532	INTEGER(KIND=1) :: fill = -127 !< fill value for lod = 2
533	INTEGER(KIND=1), DIMENSION(:,:), ALLOCATABLE :: var_2d !< 2d variable (lod = 1)
534	INTEGER(KIND=1), DIMENSION(:,:,:), ALLOCATABLE :: var_3d !< 3d variable (lod = 2)
535
536	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
537	END TYPE soil_in
538
539	!
540	!-- Define data type for fractions between surface types
541	TYPE fracs
542	INTEGER(iwp) :: nf !< total number of fractions
543	INTEGER(iwp), DIMENSION(:), ALLOCATABLE :: nfracs !< dimension array for fraction
544
545	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
546
547	REAL(wp) :: fill = -9999.9_wp !< fill value
548	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: frac !< respective fraction between different surface types
549	END TYPE fracs
550	!
551	!-- Data type for parameter lists, Depending on the given level of detail,
552	!-- the input is 3D or 4D
553	TYPE pars
554	INTEGER(iwp) :: lod = 1 !< level of detail
555	INTEGER(iwp) :: np !< total number of parameters
556	INTEGER(iwp) :: nz !< vertical dimension - number of soil layers
557	INTEGER(iwp), DIMENSION(:), ALLOCATABLE :: layers !< dimension array for soil layers
558	INTEGER(iwp), DIMENSION(:), ALLOCATABLE :: pars !< dimension array for parameters
559
560	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
561
562	REAL(wp) :: fill = -9999.9_wp !< fill value
563	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: pars_xy !< respective parameters, level of detail = 1
564	REAL(wp), DIMENSION(:,:,:,:), ALLOCATABLE :: pars_xyz !< respective parameters, level of detail = 2
565	END TYPE pars
566	!
567	!-- Define type for global file attributes
568	!-- Please refer to the PALM data standard for a detailed description of each
569	!-- attribute.
570	TYPE global_atts_type
571	CHARACTER(LEN=12 ) :: acronym !< acronym of institution
572	CHARACTER(LEN=7) :: acronym_char = 'acronym' !< name of attribute
573	CHARACTER(LEN=200) :: author !< first name, last name, email adress
574	CHARACTER(LEN=6) :: author_char = 'author' !< name of attribute
575	CHARACTER(LEN=12 ) :: campaign = 'PALM-4U' !< name of campaign
576	CHARACTER(LEN=8) :: campaign_char = 'campaign' !< name of attribute
577	CHARACTER(LEN=200) :: comment !< comment to data
578	CHARACTER(LEN=7) :: comment_char = 'comment' !< name of attribute
579	CHARACTER(LEN=200) :: contact_person !< first name, last name, email adress
580	CHARACTER(LEN=14) :: contact_person_char = 'contact_person' !< name of attribute
581	CHARACTER(LEN=200) :: conventions = 'CF-1.7' !< netCDF convention
582	CHARACTER(LEN=11) :: conventions_char = 'Conventions' !< name of attribute
583	CHARACTER(LEN=23 ) :: creation_time !< creation time of data set
584	CHARACTER(LEN=13) :: creation_time_char = 'creation_time' !< name of attribute
585	CHARACTER(LEN=16 ) :: data_content !< content of data set
586	CHARACTER(LEN=12) :: data_content_char = 'data_content' !< name of attribute
587	CHARACTER(LEN=200) :: dependencies !< dependencies of data set
588	CHARACTER(LEN=12) :: dependencies_char = 'dependencies' !< name of attribute
589	CHARACTER(LEN=200) :: history !< information about data processing
590	CHARACTER(LEN=7) :: history_char = 'history' !< name of attribute
591	CHARACTER(LEN=200) :: institution !< name of responsible institution
592	CHARACTER(LEN=11) :: institution_char = 'institution' !< name of attribute
593	CHARACTER(LEN=200) :: keywords !< keywords of data set
594	CHARACTER(LEN=8) :: keywords_char = 'keywords' !< name of attribute
595	CHARACTER(LEN=200) :: licence !< licence of data set
596	CHARACTER(LEN=7) :: licence_char = 'licence' !< name of attribute
597	CHARACTER(LEN=200) :: location !< place which refers to data set
598	CHARACTER(LEN=8) :: location_char = 'location' !< name of attribute
599	CHARACTER(LEN=10) :: origin_lat_char = 'origin_lat' !< name of attribute
600	CHARACTER(LEN=10) :: origin_lon_char = 'origin_lon' !< name of attribute
601	CHARACTER(LEN=23 ) :: origin_time = '2000-01-01 00:00:00 +00' !< reference time
602	CHARACTER(LEN=11) :: origin_time_char = 'origin_time' !< name of attribute
603	CHARACTER(LEN=8) :: origin_x_char = 'origin_x' !< name of attribute
604	CHARACTER(LEN=8) :: origin_y_char = 'origin_y' !< name of attribute
605	CHARACTER(LEN=8) :: origin_z_char = 'origin_z' !< name of attribute
606	CHARACTER(LEN=12) :: palm_version_char = 'palm_version' !< name of attribute
607	CHARACTER(LEN=200) :: references !< literature referring to data set
608	CHARACTER(LEN=10) :: references_char = 'references' !< name of attribute
609	CHARACTER(LEN=14) :: rotation_angle_char = 'rotation_angle' !< name of attribute
610	CHARACTER(LEN=12 ) :: site !< name of model domain
611	CHARACTER(LEN=4) :: site_char = 'site' !< name of attribute
612	CHARACTER(LEN=200) :: source !< source of data set
613	CHARACTER(LEN=6) :: source_char = 'source' !< name of attribute
614	CHARACTER(LEN=200) :: title !< title of data set
615	CHARACTER(LEN=5) :: title_char = 'title' !< name of attribute
616	CHARACTER(LEN=7) :: version_char = 'version' !< name of attribute
617
618	INTEGER(iwp) :: version !< version of data set
619
620	REAL(wp) :: origin_lat !< latitude of lower left corner
621	REAL(wp) :: origin_lon !< longitude of lower left corner
622	REAL(wp) :: origin_x !< easting (UTM coordinate) of lower left corner
623	REAL(wp) :: origin_y !< northing (UTM coordinate) of lower left corner
624	REAL(wp) :: origin_z !< reference height
625	REAL(wp) :: palm_version !< PALM version of data set
626	REAL(wp) :: rotation_angle !< rotation angle of coordinate system of data set
627	END TYPE global_atts_type
628	!
629	!-- Define type for coordinate reference system (crs)
630	TYPE crs_type
631	CHARACTER(LEN=200) :: epsg_code = 'EPSG:25831' !< EPSG code
632	CHARACTER(LEN=200) :: grid_mapping_name = 'transverse_mercator' !< name of grid mapping
633	CHARACTER(LEN=200) :: long_name = 'coordinate reference system' !< name of variable crs
634	CHARACTER(LEN=200) :: units = 'm' !< unit of crs
635
636	REAL(wp) :: false_easting = 500000.0_wp !< false easting
637	REAL(wp) :: false_northing = 0.0_wp !< false northing
638	REAL(wp) :: inverse_flattening = 298.257223563_wp !< 1/f (default for WGS84)
639	REAL(wp) :: latitude_of_projection_origin = 0.0_wp !< latitude of projection origin
640	REAL(wp) :: longitude_of_central_meridian = 3.0_wp !< longitude of central meridian of UTM zone (default: zone 31)
641	REAL(wp) :: longitude_of_prime_meridian = 0.0_wp !< longitude of prime meridian
642	REAL(wp) :: scale_factor_at_central_meridian = 0.9996_wp !< scale factor of UTM coordinates
643	REAL(wp) :: semi_major_axis = 6378137.0_wp !< length of semi major axis (default for WGS84)
644	END TYPE crs_type
645
646	!
647	!-- Define variables
648	TYPE(crs_type) :: coord_ref_sys !< coordinate reference system
649
650	TYPE(dims_xy) :: dim_static !< data structure for x, y-dimension in static input file
651
652	TYPE(nest_offl_type) :: nest_offl !< data structure for data input at lateral and top boundaries (provided by Inifor)
653
654	TYPE(init_type) :: init_3d !< data structure for the initialization of the 3D flow and soil fields
655	TYPE(init_type) :: init_model !< data structure for the initialization of the model
656
657	!
658	!-- Define 2D variables of type NC_BYTE
659	TYPE(int_2d_8bit) :: albedo_type_f !< input variable for albedo type
660	TYPE(int_2d_8bit) :: building_type_f !< input variable for building type
661	TYPE(int_2d_8bit) :: pavement_type_f !< input variable for pavenment type
662	TYPE(int_2d_8bit) :: street_crossing_f !< input variable for water type
663	TYPE(int_2d_8bit) :: street_type_f !< input variable for water type
664	TYPE(int_2d_8bit) :: vegetation_type_f !< input variable for vegetation type
665	TYPE(int_2d_8bit) :: water_type_f !< input variable for water type
666	!
667	!-- Define 3D variables of type NC_BYTE
668	TYPE(int_3d_8bit) :: building_obstruction_f !< input variable for building obstruction
669	TYPE(int_3d_8bit) :: building_obstruction_full !< input variable for building obstruction
670	!
671	!-- Define 2D variables of type NC_INT
672	TYPE(int_2d_32bit) :: building_id_f !< input variable for building ID
673	!
674	!-- Define 2D variables of type NC_FLOAT
675	TYPE(real_2d) :: terrain_height_f !< input variable for terrain height
676	TYPE(real_2d) :: uvem_irradiance_f !< input variable for uvem irradiance lookup table
677	TYPE(real_2d) :: uvem_integration_f !< input variable for uvem integration
678	!
679	!-- Define 3D variables of type NC_FLOAT
680	TYPE(real_3d) :: basal_area_density_f !< input variable for basal area density - resolved vegetation
681	TYPE(real_3d) :: leaf_area_density_f !< input variable for leaf area density - resolved vegetation
682	TYPE(real_3d) :: root_area_density_lad_f !< input variable for root area density - resolved vegetation
683	TYPE(real_3d) :: root_area_density_lsm_f !< input variable for root area density - parametrized vegetation
684	TYPE(real_3d) :: uvem_radiance_f !< input variable for uvem radiance lookup table
685	TYPE(real_3d) :: uvem_projarea_f !< input variable for uvem projection area lookup table
686	!
687	!-- Define input variable for buildings
688	TYPE(build_in) :: buildings_f !< input variable for buildings
689	!
690	!-- Define input variables for soil_type
691	TYPE(soil_in) :: soil_type_f !< input variable for soil type
692
693	TYPE(fracs) :: surface_fraction_f !< input variable for surface fraction
694
695	TYPE(pars) :: albedo_pars_f !< input variable for albedo parameters
696	TYPE(pars) :: building_pars_f !< input variable for building parameters
697	TYPE(pars) :: pavement_pars_f !< input variable for pavement parameters
698	TYPE(pars) :: pavement_subsurface_pars_f !< input variable for pavement parameters
699	TYPE(pars) :: soil_pars_f !< input variable for soil parameters
700	TYPE(pars) :: vegetation_pars_f !< input variable for vegetation parameters
701	TYPE(pars) :: water_pars_f !< input variable for water parameters
702
703	TYPE(chem_emis_att_type) :: chem_emis_att !< Input Information of Chemistry Emission Data from netcdf
704	TYPE(chem_emis_val_type), ALLOCATABLE, DIMENSION(:) :: chem_emis !< Input Chemistry Emission Data from netcdf
705
706	CHARACTER(LEN=3) :: char_lod = 'lod' !< name of level-of-detail attribute in NetCDF file
707
708	CHARACTER(LEN=10) :: char_fill = '_FillValue' !< name of fill value attribute in NetCDF file
709
710	CHARACTER(LEN=100) :: input_file_static = 'PIDS_STATIC' !< Name of file which comprises static input data
711	CHARACTER(LEN=100) :: input_file_dynamic = 'PIDS_DYNAMIC' !< Name of file which comprises dynamic input data
712	CHARACTER(LEN=100) :: input_file_chem = 'PIDS_CHEM' !< Name of file which comprises chemistry input data
713	CHARACTER(LEN=100) :: input_file_uvem = 'PIDS_UVEM' !< Name of file which comprises static uv_exposure model input data
714	CHARACTER(LEN=100) :: input_file_vm = 'PIDS_VM' !< Name of file which comprises virtual measurement data
715
716	CHARACTER (LEN=25), ALLOCATABLE, DIMENSION(:) :: string_values !< output of string variables read from netcdf input files
717
718	INTEGER(iwp) :: id_emis !< NetCDF id of input file for chemistry emissions: TBD: It has to be removed
719
720	INTEGER(iwp) :: nc_stat !< return value of nf90 function call
721
722	LOGICAL :: input_pids_static = .FALSE. !< Flag indicating whether Palm-input-data-standard file containing static information exists
723	LOGICAL :: input_pids_dynamic = .FALSE. !< Flag indicating whether Palm-input-data-standard file containing dynamic information exists
724	LOGICAL :: input_pids_chem = .FALSE. !< Flag indicating whether Palm-input-data-standard file containing chemistry information exists
725	LOGICAL :: input_pids_uvem = .FALSE. !< Flag indicating whether uv-expoure-model input file containing static information exists
726	LOGICAL :: input_pids_vm = .FALSE. !< Flag indicating whether input file for virtual measurements exist
727
728	LOGICAL :: collective_read = .FALSE. !< Enable NetCDF collective read
729
730	TYPE(global_atts_type) :: input_file_atts !< global attributes of input file
731
732	SAVE
733
734	PRIVATE
735
736	INTERFACE netcdf_data_input_interpolate
737	MODULE PROCEDURE netcdf_data_input_interpolate_1d
738	MODULE PROCEDURE netcdf_data_input_interpolate_1d_soil
739	MODULE PROCEDURE netcdf_data_input_interpolate_2d
740	MODULE PROCEDURE netcdf_data_input_interpolate_3d
741	END INTERFACE netcdf_data_input_interpolate
742
743	INTERFACE netcdf_data_input_check_dynamic
744	MODULE PROCEDURE netcdf_data_input_check_dynamic
745	END INTERFACE netcdf_data_input_check_dynamic
746
747	INTERFACE netcdf_data_input_check_static
748	MODULE PROCEDURE netcdf_data_input_check_static
749	END INTERFACE netcdf_data_input_check_static
750
751	INTERFACE netcdf_data_input_chemistry_data
752	MODULE PROCEDURE netcdf_data_input_chemistry_data
753	END INTERFACE netcdf_data_input_chemistry_data
754
755	INTERFACE netcdf_data_input_get_dimension_length
756	MODULE PROCEDURE netcdf_data_input_get_dimension_length
757	END INTERFACE netcdf_data_input_get_dimension_length
758
759	INTERFACE netcdf_data_input_inquire_file
760	MODULE PROCEDURE netcdf_data_input_inquire_file
761	END INTERFACE netcdf_data_input_inquire_file
762
763	INTERFACE netcdf_data_input_init
764	MODULE PROCEDURE netcdf_data_input_init
765	END INTERFACE netcdf_data_input_init
766
767	INTERFACE netcdf_data_input_att
768	MODULE PROCEDURE netcdf_data_input_att_int
769	MODULE PROCEDURE netcdf_data_input_att_real
770	MODULE PROCEDURE netcdf_data_input_att_string
771	END INTERFACE netcdf_data_input_att
772
773	INTERFACE netcdf_data_input_init_3d
774	MODULE PROCEDURE netcdf_data_input_init_3d
775	END INTERFACE netcdf_data_input_init_3d
776
777	INTERFACE netcdf_data_input_init_lsm
778	MODULE PROCEDURE netcdf_data_input_init_lsm
779	END INTERFACE netcdf_data_input_init_lsm
780
781	INTERFACE netcdf_data_input_offline_nesting
782	MODULE PROCEDURE netcdf_data_input_offline_nesting
783	END INTERFACE netcdf_data_input_offline_nesting
784
785	INTERFACE netcdf_data_input_surface_data
786	MODULE PROCEDURE netcdf_data_input_surface_data
787	END INTERFACE netcdf_data_input_surface_data
788
789	INTERFACE netcdf_data_input_var
790	MODULE PROCEDURE netcdf_data_input_var_char
791	MODULE PROCEDURE netcdf_data_input_var_real_1d
792	MODULE PROCEDURE netcdf_data_input_var_real_2d
793	END INTERFACE netcdf_data_input_var
794
795	INTERFACE netcdf_data_input_uvem
796	MODULE PROCEDURE netcdf_data_input_uvem
797	END INTERFACE netcdf_data_input_uvem
798
799	INTERFACE get_variable
800	MODULE PROCEDURE get_variable_1d_char
801	MODULE PROCEDURE get_variable_1d_int
802	MODULE PROCEDURE get_variable_1d_real
803	MODULE PROCEDURE get_variable_2d_int8
804	MODULE PROCEDURE get_variable_2d_int32
805	MODULE PROCEDURE get_variable_2d_real
806	MODULE PROCEDURE get_variable_3d_int8
807	MODULE PROCEDURE get_variable_3d_real
808	MODULE PROCEDURE get_variable_3d_real_dynamic
809	MODULE PROCEDURE get_variable_4d_to_3d_real
810	MODULE PROCEDURE get_variable_4d_real
811	MODULE PROCEDURE get_variable_5d_to_4d_real
812	MODULE PROCEDURE get_variable_string
813	END INTERFACE get_variable
814
815	INTERFACE get_variable_pr
816	MODULE PROCEDURE get_variable_pr
817	END INTERFACE get_variable_pr
818
819	INTERFACE get_attribute
820	MODULE PROCEDURE get_attribute_real
821	MODULE PROCEDURE get_attribute_int8
822	MODULE PROCEDURE get_attribute_int32
823	MODULE PROCEDURE get_attribute_string
824	END INTERFACE get_attribute
825
826	!
827	!-- Public variables
828	PUBLIC albedo_pars_f, albedo_type_f, basal_area_density_f, buildings_f, &
829	building_id_f, building_pars_f, building_type_f, &
830	chem_emis, chem_emis_att, chem_emis_att_type, chem_emis_val_type, &
831	coord_ref_sys, &
832	init_3d, init_model, input_file_atts, input_file_static, &
833	input_pids_static, &
834	input_pids_dynamic, input_pids_vm, input_file_vm, &
835	leaf_area_density_f, nest_offl, &
836	pavement_pars_f, pavement_subsurface_pars_f, pavement_type_f, &
837	root_area_density_lad_f, root_area_density_lsm_f, soil_pars_f, &
838	soil_type_f, street_crossing_f, street_type_f, surface_fraction_f, &
839	terrain_height_f, vegetation_pars_f, vegetation_type_f, &
840	water_pars_f, water_type_f
841	!
842	!-- Public uv exposure variables
843	PUBLIC building_obstruction_f, input_file_uvem, input_pids_uvem, &
844	netcdf_data_input_uvem, &
845	uvem_integration_f, uvem_irradiance_f, &
846	uvem_projarea_f, uvem_radiance_f
847
848	!
849	!-- Public subroutines
850	PUBLIC netcdf_data_input_check_dynamic, netcdf_data_input_check_static, &
851	netcdf_data_input_chemistry_data, &
852	netcdf_data_input_get_dimension_length, &
853	netcdf_data_input_inquire_file, &
854	netcdf_data_input_init, netcdf_data_input_init_lsm, &
855	netcdf_data_input_init_3d, netcdf_data_input_att, &
856	netcdf_data_input_interpolate, netcdf_data_input_offline_nesting, &
857	netcdf_data_input_surface_data, netcdf_data_input_topo, &
858	netcdf_data_input_var, get_attribute, get_variable, open_read_file
859
860
861	CONTAINS
862
863	!------------------------------------------------------------------------------!
864	! Description:
865	! ------------
866	!> Inquires whether NetCDF input files according to Palm-input-data standard
867	!> exist. Moreover, basic checks are performed.
868	!------------------------------------------------------------------------------!
869	SUBROUTINE netcdf_data_input_inquire_file
870
871	USE control_parameters, &
872	ONLY: topo_no_distinct
873
874	IMPLICIT NONE
875
876	#if defined ( __netcdf )
877	INQUIRE( FILE = TRIM( input_file_static ) // TRIM( coupling_char ), &
878	EXIST = input_pids_static )
879	INQUIRE( FILE = TRIM( input_file_dynamic ) // TRIM( coupling_char ), &
880	EXIST = input_pids_dynamic )
881	INQUIRE( FILE = TRIM( input_file_chem ) // TRIM( coupling_char ), &
882	EXIST = input_pids_chem )
883	INQUIRE( FILE = TRIM( input_file_uvem ) // TRIM( coupling_char ), &
884	EXIST = input_pids_uvem )
885	INQUIRE( FILE = TRIM( input_file_vm ) // TRIM( coupling_char ), &
886	EXIST = input_pids_vm )
887	#endif
888
889	!
890	!-- As long as topography can be input via ASCII format, no distinction
891	!-- between building and terrain can be made. This case, classify all
892	!-- surfaces as default type. Same in case land-surface and urban-surface
893	!-- model are not applied.
894	IF ( .NOT. input_pids_static ) THEN
895	topo_no_distinct = .TRUE.
896	ENDIF
897
898	END SUBROUTINE netcdf_data_input_inquire_file
899
900	!------------------------------------------------------------------------------!
901	! Description:
902	! ------------
903	!> Reads global attributes and coordinate reference system required for
904	!> initialization of the model.
905	!------------------------------------------------------------------------------!
906	SUBROUTINE netcdf_data_input_init
907
908	IMPLICIT NONE
909
910	INTEGER(iwp) :: id_mod !< NetCDF id of input file
911	INTEGER(iwp) :: var_id_crs !< NetCDF id of variable crs
912
913	IF ( .NOT. input_pids_static ) RETURN
914
915	#if defined ( __netcdf )
916	!
917	!-- Open file in read-only mode
918	CALL open_read_file( TRIM( input_file_static ) // &
919	TRIM( coupling_char ), id_mod )
920	!
921	!-- Read global attributes
922	CALL get_attribute( id_mod, input_file_atts%origin_lat_char, &
923	input_file_atts%origin_lat, .TRUE. )
924
925	CALL get_attribute( id_mod, input_file_atts%origin_lon_char, &
926	input_file_atts%origin_lon, .TRUE. )
927
928	CALL get_attribute( id_mod, input_file_atts%origin_time_char, &
929	input_file_atts%origin_time, .TRUE. )
930
931	CALL get_attribute( id_mod, input_file_atts%origin_x_char, &
932	input_file_atts%origin_x, .TRUE. )
933
934	CALL get_attribute( id_mod, input_file_atts%origin_y_char, &
935	input_file_atts%origin_y, .TRUE. )
936
937	CALL get_attribute( id_mod, input_file_atts%origin_z_char, &
938	input_file_atts%origin_z, .TRUE. )
939
940	CALL get_attribute( id_mod, input_file_atts%rotation_angle_char, &
941	input_file_atts%rotation_angle, .TRUE. )
942
943	CALL get_attribute( id_mod, input_file_atts%author_char, input_file_atts%author, .TRUE., no_abort=.FALSE. )
944	CALL get_attribute( id_mod, input_file_atts%contact_person_char, input_file_atts%contact_person, .TRUE., no_abort=.FALSE. )
945	CALL get_attribute( id_mod, input_file_atts%institution_char, input_file_atts%institution, .TRUE., no_abort=.FALSE. )
946	CALL get_attribute( id_mod, input_file_atts%acronym_char, input_file_atts%acronym, .TRUE., no_abort=.FALSE. )
947
948	CALL get_attribute( id_mod, input_file_atts%campaign_char, input_file_atts%campaign, .TRUE., no_abort=.FALSE. )
949	CALL get_attribute( id_mod, input_file_atts%location_char, input_file_atts%location, .TRUE., no_abort=.FALSE. )
950	CALL get_attribute( id_mod, input_file_atts%site_char, input_file_atts%site, .TRUE., no_abort=.FALSE. )
951
952	CALL get_attribute( id_mod, input_file_atts%source_char, input_file_atts%source, .TRUE., no_abort=.FALSE. )
953	CALL get_attribute( id_mod, input_file_atts%references_char, input_file_atts%references, .TRUE., no_abort=.FALSE. )
954	CALL get_attribute( id_mod, input_file_atts%keywords_char, input_file_atts%keywords, .TRUE., no_abort=.FALSE. )
955	CALL get_attribute( id_mod, input_file_atts%licence_char, input_file_atts%licence, .TRUE., no_abort=.FALSE. )
956	CALL get_attribute( id_mod, input_file_atts%comment_char, input_file_atts%comment, .TRUE., no_abort=.FALSE. )
957	!
958	!-- Read coordinate reference system if available
959	nc_stat = NF90_INQ_VARID( id_mod, 'crs', var_id_crs )
960	IF ( nc_stat == NF90_NOERR ) THEN
961	CALL get_attribute( id_mod, 'epsg_code', &
962	coord_ref_sys%epsg_code, &
963	.FALSE., 'crs' )
964	CALL get_attribute( id_mod, 'false_easting', &
965	coord_ref_sys%false_easting, &
966	.FALSE., 'crs' )
967	CALL get_attribute( id_mod, 'false_northing', &
968	coord_ref_sys%false_northing, &
969	.FALSE., 'crs' )
970	CALL get_attribute( id_mod, 'grid_mapping_name', &
971	coord_ref_sys%grid_mapping_name, &
972	.FALSE., 'crs' )
973	CALL get_attribute( id_mod, 'inverse_flattening', &
974	coord_ref_sys%inverse_flattening, &
975	.FALSE., 'crs' )
976	CALL get_attribute( id_mod, 'latitude_of_projection_origin', &
977	coord_ref_sys%latitude_of_projection_origin, &
978	.FALSE., 'crs' )
979	CALL get_attribute( id_mod, 'long_name', &
980	coord_ref_sys%long_name, &
981	.FALSE., 'crs' )
982	CALL get_attribute( id_mod, 'longitude_of_central_meridian', &
983	coord_ref_sys%longitude_of_central_meridian, &
984	.FALSE., 'crs' )
985	CALL get_attribute( id_mod, 'longitude_of_prime_meridian', &
986	coord_ref_sys%longitude_of_prime_meridian, &
987	.FALSE., 'crs' )
988	CALL get_attribute( id_mod, 'scale_factor_at_central_meridian', &
989	coord_ref_sys%scale_factor_at_central_meridian, &
990	.FALSE., 'crs' )
991	CALL get_attribute( id_mod, 'semi_major_axis', &
992	coord_ref_sys%semi_major_axis, &
993	.FALSE., 'crs' )
994	CALL get_attribute( id_mod, 'units', &
995	coord_ref_sys%units, &
996	.FALSE., 'crs' )
997	ELSE
998	!
999	!-- Calculate central meridian from origin_lon
1000	coord_ref_sys%longitude_of_central_meridian = &
1001	CEILING( input_file_atts%origin_lon / 6.0_wp ) * 6.0_wp - 3.0_wp
1002	ENDIF
1003	!
1004	!-- Finally, close input file
1005	CALL close_input_file( id_mod )
1006	#endif
1007	!
1008	!-- Copy latitude, longitude, origin_z, rotation angle on init type
1009	init_model%latitude = input_file_atts%origin_lat
1010	init_model%longitude = input_file_atts%origin_lon
1011	init_model%origin_time = input_file_atts%origin_time
1012	init_model%origin_x = input_file_atts%origin_x
1013	init_model%origin_y = input_file_atts%origin_y
1014	init_model%origin_z = input_file_atts%origin_z
1015	init_model%rotation_angle = input_file_atts%rotation_angle
1016
1017	!
1018	!-- In case of nested runs, each model domain might have different longitude
1019	!-- and latitude, which would result in different Coriolis parameters and
1020	!-- sun-zenith angles. To avoid this, longitude and latitude in each model
1021	!-- domain will be set to the values of the root model. Please note, this
1022	!-- synchronization is required already here.
1023	#if defined( __parallel )
1024	CALL MPI_BCAST( init_model%latitude, 1, MPI_REAL, 0, &
1025	MPI_COMM_WORLD, ierr )
1026	CALL MPI_BCAST( init_model%longitude, 1, MPI_REAL, 0, &
1027	MPI_COMM_WORLD, ierr )
1028	#endif
1029
1030	END SUBROUTINE netcdf_data_input_init
1031
1032	!------------------------------------------------------------------------------!
1033	! Description:
1034	! ------------
1035	!> Read an array of characters.
1036	!------------------------------------------------------------------------------!
1037	SUBROUTINE netcdf_data_input_var_char( val, search_string, id_mod )
1038
1039	IMPLICIT NONE
1040
1041	CHARACTER(LEN=*) :: search_string !< name of the variable
1042	CHARACTER(LEN=*), DIMENSION(:) :: val !< variable which should be read
1043
1044	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1045
1046	#if defined ( __netcdf )
1047	!
1048	!-- Read variable
1049	CALL get_variable( id_mod, search_string, val )
1050	#endif
1051
1052	END SUBROUTINE netcdf_data_input_var_char
1053
1054	!------------------------------------------------------------------------------!
1055	! Description:
1056	! ------------
1057	!> Read an 1D array of REAL values.
1058	!------------------------------------------------------------------------------!
1059	SUBROUTINE netcdf_data_input_var_real_1d( val, search_string, id_mod )
1060
1061	IMPLICIT NONE
1062
1063	CHARACTER(LEN=*) :: search_string !< name of the variable
1064
1065	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1066
1067	REAL(wp), DIMENSION(:) :: val !< variable which should be read
1068
1069	#if defined ( __netcdf )
1070	!
1071	!-- Read variable
1072	CALL get_variable( id_mod, search_string, val )
1073	#endif
1074
1075	END SUBROUTINE netcdf_data_input_var_real_1d
1076
1077	!------------------------------------------------------------------------------!
1078	! Description:
1079	! ------------
1080	!> Read an 1D array of REAL values.
1081	!------------------------------------------------------------------------------!
1082	SUBROUTINE netcdf_data_input_var_real_2d( val, search_string, &
1083	id_mod, d1s, d1e, d2s, d2e )
1084
1085	IMPLICIT NONE
1086
1087	CHARACTER(LEN=*) :: search_string !< name of the variable
1088
1089	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1090	INTEGER(iwp) :: d1e !< end index of first dimension to be read
1091	INTEGER(iwp) :: d2e !< end index of second dimension to be read
1092	INTEGER(iwp) :: d1s !< start index of first dimension to be read
1093	INTEGER(iwp) :: d2s !< start index of second dimension to be read
1094
1095	REAL(wp), DIMENSION(:,:) :: val !< variable which should be read
1096
1097	#if defined ( __netcdf )
1098	!
1099	!-- Read character variable
1100	CALL get_variable( id_mod, search_string, val, d1s, d1e, d2s, d2e )
1101	#endif
1102
1103	END SUBROUTINE netcdf_data_input_var_real_2d
1104
1105	!------------------------------------------------------------------------------!
1106	! Description:
1107	! ------------
1108	!> Read a global string attribute
1109	!------------------------------------------------------------------------------!
1110	SUBROUTINE netcdf_data_input_att_string( val, search_string, id_mod, &
1111	input_file, global, openclose, &
1112	variable_name )
1113
1114	IMPLICIT NONE
1115
1116	CHARACTER(LEN=*) :: search_string !< name of the attribue
1117	CHARACTER(LEN=*) :: val !< attribute
1118
1119	CHARACTER(LEN=*) :: input_file !< name of input file
1120	CHARACTER(LEN=*) :: openclose !< string indicating whether NetCDF needs to be opend or closed
1121	CHARACTER(LEN=*) :: variable_name !< string indicating whether NetCDF needs to be opend or closed
1122
1123	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1124
1125	LOGICAL :: global !< flag indicating a global or a variable's attribute
1126
1127	#if defined ( __netcdf )
1128	!
1129	!-- Open file in read-only mode if necessary
1130	IF ( openclose == 'open' ) THEN
1131	CALL open_read_file( TRIM( input_file ) // TRIM( coupling_char ), &
1132	id_mod )
1133	ENDIF
1134	!
1135	!-- Read global attribute
1136	IF ( global ) THEN
1137	CALL get_attribute( id_mod, search_string, val, global )
1138	!
1139	!-- Read variable attribute
1140	ELSE
1141	CALL get_attribute( id_mod, search_string, val, global, variable_name )
1142	ENDIF
1143	!
1144	!-- Close input file
1145	IF ( openclose == 'close' ) CALL close_input_file( id_mod )
1146	#endif
1147
1148	END SUBROUTINE netcdf_data_input_att_string
1149
1150	!------------------------------------------------------------------------------!
1151	! Description:
1152	! ------------
1153	!> Read a global integer attribute
1154	!------------------------------------------------------------------------------!
1155	SUBROUTINE netcdf_data_input_att_int( val, search_string, id_mod, &
1156	input_file, global, openclose, &
1157	variable_name )
1158
1159	IMPLICIT NONE
1160
1161	CHARACTER(LEN=*) :: search_string !< name of the attribue
1162
1163	CHARACTER(LEN=*) :: input_file !< name of input file
1164	CHARACTER(LEN=*) :: openclose !< string indicating whether NetCDF needs to be opend or closed
1165	CHARACTER(LEN=*) :: variable_name !< string indicating whether NetCDF needs to be opend or closed
1166
1167	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1168	INTEGER(iwp) :: val !< value of the attribute
1169
1170	LOGICAL :: global !< flag indicating a global or a variable's attribute
1171
1172	#if defined ( __netcdf )
1173	!
1174	!-- Open file in read-only mode
1175	IF ( openclose == 'open' ) THEN
1176	CALL open_read_file( TRIM( input_file ) // TRIM( coupling_char ), &
1177	id_mod )
1178	ENDIF
1179	!
1180	!-- Read global attribute
1181	IF ( global ) THEN
1182	CALL get_attribute( id_mod, search_string, val, global )
1183	!
1184	!-- Read variable attribute
1185	ELSE
1186	CALL get_attribute( id_mod, search_string, val, global, variable_name )
1187	ENDIF
1188	!
1189	!-- Finally, close input file
1190	IF ( openclose == 'close' ) CALL close_input_file( id_mod )
1191	#endif
1192
1193	END SUBROUTINE netcdf_data_input_att_int
1194
1195	!------------------------------------------------------------------------------!
1196	! Description:
1197	! ------------
1198	!> Read a global real attribute
1199	!------------------------------------------------------------------------------!
1200	SUBROUTINE netcdf_data_input_att_real( val, search_string, id_mod, &
1201	input_file, global, openclose, &
1202	variable_name )
1203
1204	IMPLICIT NONE
1205
1206	CHARACTER(LEN=*) :: search_string !< name of the attribue
1207
1208	CHARACTER(LEN=*) :: input_file !< name of input file
1209	CHARACTER(LEN=*) :: openclose !< string indicating whether NetCDF needs to be opend or closed
1210	CHARACTER(LEN=*) :: variable_name !< string indicating whether NetCDF needs to be opend or closed
1211
1212	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1213
1214	LOGICAL :: global !< flag indicating a global or a variable's attribute
1215
1216	REAL(wp) :: val !< value of the attribute
1217
1218	#if defined ( __netcdf )
1219	!
1220	!-- Open file in read-only mode
1221	IF ( openclose == 'open' ) THEN
1222	CALL open_read_file( TRIM( input_file ) // TRIM( coupling_char ), &
1223	id_mod )
1224	ENDIF
1225	!
1226	!-- Read global attribute
1227	IF ( global ) THEN
1228	CALL get_attribute( id_mod, search_string, val, global )
1229	!
1230	!-- Read variable attribute
1231	ELSE
1232	CALL get_attribute( id_mod, search_string, val, global, variable_name )
1233	ENDIF
1234	!
1235	!-- Finally, close input file
1236	IF ( openclose == 'close' ) CALL close_input_file( id_mod )
1237	#endif
1238
1239	END SUBROUTINE netcdf_data_input_att_real
1240
1241	!------------------------------------------------------------------------------!
1242	! Description:
1243	! ------------
1244	!> Reads Chemistry NETCDF Input data, such as emission values, emission species, etc. .
1245	!------------------------------------------------------------------------------!
1246	SUBROUTINE netcdf_data_input_chemistry_data(emt_att,emt)
1247
1248	USE chem_modules, &
1249	ONLY: do_emis, mode_emis, time_fac_type, &
1250	surface_csflux_name
1251
1252	USE control_parameters, &
1253	ONLY: message_string
1254
1255	USE indices, &
1256	ONLY: nz, nx, ny, nxl, nxr, nys, nyn, nzb, nzt
1257
1258	IMPLICIT NONE
1259
1260	TYPE(chem_emis_att_type), INTENT(INOUT) :: emt_att
1261	TYPE(chem_emis_val_type), ALLOCATABLE, DIMENSION(:), INTENT(INOUT) :: emt
1262
1263	CHARACTER (LEN=80) :: units='' !< units of chemistry inputs
1264
1265	INTEGER(iwp) :: ispec !< index for number of emission species in input
1266
1267	INTEGER(iwp), ALLOCATABLE, DIMENSION(:) :: dum_var !< value of variable read from netcdf input
1268	INTEGER(iwp) :: errno !< error number NF90_???? function
1269	INTEGER(iwp) :: id_var !< variable id
1270	! INTEGER(iwp) :: id_emis !< NetCDF id of input file
1271	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
1272	INTEGER(iwp) :: len_dims,len_dims_2 !< Length of dimensions
1273
1274	INTEGER(iwp) :: max_string_length=25 !< Variable for the maximum length of a string
1275
1276	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names !< Name of Variables
1277
1278	REAL(wp), ALLOCATABLE, DIMENSION(:,:,:) :: dum_var_3d !< variable for storing temporary data of 3-dimensional
1279	! variables read from netcdf for chemistry emissions
1280
1281	REAL(wp), ALLOCATABLE, DIMENSION(:,:,:,:) :: dum_var_4d !< variable for storing temporary data of 5-dimensional
1282	!< variables read from netcdf for chemistry emissions
1283	!--
1284	!> Start the processing of the data
1285	CALL location_message( 'starting allocation of chemistry emissions arrays', .FALSE. )
1286
1287	!> Parameterized mode of the emissions
1288	IF (TRIM(mode_emis)=="PARAMETERIZED" .OR. TRIM(mode_emis)=="parameterized") THEN
1289
1290	ispec=1
1291	emt_att%nspec=0
1292
1293	!number of species
1294	DO WHILE (TRIM( surface_csflux_name( ispec ) ) /= 'novalue' )
1295
1296	emt_att%nspec=emt_att%nspec+1
1297	ispec=ispec+1
1298
1299	ENDDO
1300
1301	!-- allocate emission values data type arrays
1302	ALLOCATE(emt(emt_att%nspec))
1303
1304	!-- Read EMISSION SPECIES NAMES
1305
1306	!Assign values
1307	ALLOCATE(emt_att%species_name(emt_att%nspec))
1308
1309	DO ispec=1,emt_att%nspec
1310	emt_att%species_name(ispec) = TRIM(surface_csflux_name(ispec))
1311	ENDDO
1312
1313
1314	!> DEFAULT AND PRE-PROCESSED MODE
1315	ELSE
1316
1317	#if defined ( __netcdf )
1318	IF ( .NOT. input_pids_chem ) RETURN
1319
1320	!-- Open file in read-only mode
1321	CALL open_read_file( TRIM( input_file_chem ) // &
1322	TRIM( coupling_char ), id_emis )
1323	!-- inquire number of variables
1324	CALL inquire_num_variables( id_emis, num_vars )
1325
1326	!-- Get General Dimension Lengths: only number of species and number of categories.
1327	! the other dimensions depend on the mode of the emissions or on the presence of specific components
1328	!nspecies
1329	CALL netcdf_data_input_get_dimension_length( id_emis, emt_att%nspec, 'nspecies' )
1330
1331
1332	!-- Allocate emission values data type arrays
1333	ALLOCATE(emt(1:emt_att%nspec))
1334
1335
1336	!-- Read EMISSION SPECIES NAMES
1337	!Allocate Arrays
1338	ALLOCATE(emt_att%species_name(emt_att%nspec))
1339
1340	!Call get Variable
1341	CALL get_variable( id_emis, 'emission_name', string_values, emt_att%nspec )
1342	emt_att%species_name=string_values
1343	! If allocated, Deallocate var_string, an array only used for reading-in strings
1344	IF (ALLOCATED(string_values)) DEALLOCATE(string_values)
1345
1346	!-- Read EMISSION SPECIES INDEX
1347	!Allocate Arrays
1348	ALLOCATE(emt_att%species_index(emt_att%nspec))
1349	!Call get Variable
1350	CALL get_variable( id_emis, 'emission_index', emt_att%species_index )
1351
1352
1353	!-- Now the routine has to distinguish between DEFAULT and PRE-PROCESSED chemistry emission modes
1354
1355	IF (TRIM(mode_emis)=="DEFAULT" .OR. TRIM(mode_emis)=="default") THEN
1356
1357	!number of categories
1358	CALL netcdf_data_input_get_dimension_length( id_emis, emt_att%ncat, 'ncat' )
1359
1360	!-- Read EMISSION CATEGORIES INDEX
1361	!Allocate Arrays
1362	ALLOCATE(emt_att%cat_index(emt_att%ncat))
1363	!Call get Variable
1364	CALL get_variable( id_emis, 'emission_cat_index', emt_att%cat_index )
1365
1366
1367	DO ispec=1,emt_att%nspec
1368	!-- EMISSION_VOC_NAME (1-DIMENSIONAL)
1369	IF (TRIM(emt_att%species_name(ispec))=="VOC" .OR. TRIM(emt_att%species_name(ispec))=="voc") THEN
1370	!Allocate Array
1371	CALL netcdf_data_input_get_dimension_length( id_emis, emt_att%nvoc, 'nvoc' )
1372	ALLOCATE(emt_att%voc_name(1:emt_att%nvoc))
1373	!Read-in Variable
1374	CALL get_variable( id_emis,"emission_voc_name",string_values, emt_att%nvoc)
1375	emt_att%voc_name=string_values
1376	IF (ALLOCATED(string_values)) DEALLOCATE(string_values)
1377
1378	!-- COMPOSITION VOC (2-DIMENSIONAL)
1379	!Allocate Array
1380	ALLOCATE(emt_att%voc_comp(1:emt_att%ncat,1:emt_att%nvoc))
1381	!Read-in Variable
1382	! CALL get_variable(id_emis,"composition_voc",emt%voc_comp,1,1,emt%ncat,emt%nvoc)
1383	CALL get_variable(id_emis,"composition_voc",emt_att%voc_comp,1,emt_att%ncat,1,emt_att%nvoc)
1384	ENDIF
1385
1386	!-- EMISSION_PM_NAME (1-DIMENSIONAL)
1387	IF (TRIM(emt_att%species_name(ispec))=="PM" .OR. TRIM(emt_att%species_name(ispec))=="pm") THEN
1388	CALL netcdf_data_input_get_dimension_length( id_emis, emt_att%npm, 'npm' )
1389	ALLOCATE(emt_att%pm_name(1:emt_att%npm))
1390	!Read-in Variable
1391	CALL get_variable( id_emis,"pm_name",string_values, emt_att%npm)
1392	emt_att%pm_name=string_values
1393	IF (ALLOCATED(string_values)) DEALLOCATE(string_values)
1394
1395	!-- COMPOSITION PM (3-DIMENSIONAL)
1396	!Allocate
1397	len_dims=3 !> number of PMs: PM1, PM2.5 and PM10
1398	ALLOCATE(emt_att%pm_comp(1:emt_att%ncat,1:emt_att%npm,1:len_dims))
1399	!Read-in Variable
1400	CALL get_variable(id_emis,"composition_pm",emt_att%pm_comp,1,emt_att%ncat,1,emt_att%npm,1,len_dims)
1401	ENDIF
1402
1403	!-- COMPOSITION_NOX (2-DIMENSIONAL)
1404	IF (TRIM(emt_att%species_name(ispec))=="NOx" .OR. TRIM(emt_att%species_name(ispec))=="nox") THEN
1405	!Allocate array
1406	ALLOCATE(emt_att%nox_comp(1:emt_att%ncat,1:emt_att%nnox))
1407	!Read-in Variable
1408	CALL get_variable(id_emis,"composition_nox",emt_att%nox_comp,1,emt_att%ncat,1,emt_att%nnox)
1409	ENDIF
1410
1411	!-- COMPOSITION-SOX (2-DIMENSIONAL)
1412	IF (TRIM(emt_att%species_name(ispec))=="SOx" .OR. TRIM(emt_att%species_name(ispec))=="sox") THEN
1413	ALLOCATE(emt_att%sox_comp(1:emt_att%ncat,1:emt_att%nsox))
1414	!Read-in Variable
1415	CALL get_variable(id_emis,"composition_sox",emt_att%sox_comp,1,emt_att%ncat,1,emt_att%nsox)
1416	ENDIF
1417	ENDDO !>ispec
1418
1419	!-- For reading the emission time factors, the distinction between HOUR and MDH data is necessary
1420
1421	!-- EMISSION_TIME_SCALING_FACTORS
1422	!-- HOUR
1423	IF (TRIM(time_fac_type)=="HOUR" .OR. TRIM(time_fac_type)=="hour") THEN
1424	!-- Allocate Array
1425	CALL netcdf_data_input_get_dimension_length( id_emis, emt_att%nhoursyear, 'nhoursyear' )
1426	ALLOCATE(emt_att%hourly_emis_time_factor(1:emt_att%ncat,1:emt_att%nhoursyear))
1427	!Read-in Variable
1428	CALL get_variable(id_emis,"emission_time_factors",emt_att%hourly_emis_time_factor,1, &
1429	emt_att%ncat,1,emt_att%nhoursyear)
1430
1431	!-- MDH
1432	ELSE IF (TRIM(time_fac_type) == "MDH" .OR. TRIM(time_fac_type) == "mdh") THEN
1433	!-- Allocate Array
1434	CALL netcdf_data_input_get_dimension_length( id_emis, emt_att%nmonthdayhour, 'nmonthdayhour' )
1435	ALLOCATE(emt_att%mdh_emis_time_factor(1:emt_att%ncat,1:emt_att%nmonthdayhour))
1436	!-- Read-in Variable
1437	CALL get_variable(id_emis,"emission_time_factors",emt_att%mdh_emis_time_factor,1, &
1438	emt_att%ncat,1,emt_att%nmonthdayhour)
1439
1440	ELSE
1441
1442	message_string = 'We are in the DEFAULT chemistry emissions mode: ' // &
1443	' !no time-factor type specified!' // &
1444	'Please, specify the value of time_fac_type:' // &
1445	' either "MDH" or "HOUR"'
1446	CALL message( 'netcdf_data_input_chemistry_data', 'CM0200', 2, 2, 0, 6, 0 )
1447
1448
1449	ENDIF
1450
1451	!-- Finally read-in the emission values and their units (DEFAULT mode)
1452
1453	DO ispec=1,emt_att%nspec
1454
1455	IF ( .NOT. ALLOCATED( emt(ispec)%default_emission_data ) ) &
1456	ALLOCATE(emt(ispec)%default_emission_data(1:emt_att%ncat,1:ny+1,1:nx+1))
1457
1458	ALLOCATE(dum_var_3d(1:emt_att%ncat,nys+1:nyn+1,nxl+1:nxr+1))
1459
1460	CALL get_variable(id_emis,"emission_values",dum_var_3d,ispec,1,emt_att%ncat,nys,nyn,nxl,nxr)
1461
1462	emt(ispec)%default_emission_data(:,nys+1:nyn+1,nxl+1:nxr+1) = &
1463	dum_var_3d(1:emt_att%ncat,nys+1:nyn+1,nxl+1:nxr+1)
1464
1465	DEALLOCATE (dum_var_3d)
1466
1467	ENDDO
1468
1469	!-- UNITS
1470	CALL get_attribute(id_emis,"units",emt_att%units,.FALSE.,"emission_values")
1471
1472
1473	!-- PRE-PROCESSED MODE --
1474
1475	ELSE IF (TRIM(mode_emis)=="PRE-PROCESSED" .OR. TRIM(mode_emis)=="pre-processed") THEN
1476	!-- In the PRE-PROCESSED mode, only the VOC names, the VOC_composition, the emission values and their units remain to be read at this point
1477
1478	DO ispec=1,emt_att%nspec
1479
1480	!-- EMISSION_VOC_NAME (1-DIMENSIONAL)
1481	IF (TRIM(emt_att%species_name(ispec))=="VOC" .OR. TRIM(emt_att%species_name(ispec))=="voc") THEN
1482	!Allocate Array
1483	CALL netcdf_data_input_get_dimension_length( id_emis, emt_att%nvoc, 'nvoc' )
1484	ALLOCATE(emt_att%voc_name(1:emt_att%nvoc))
1485	!Read-in Variable
1486	CALL get_variable( id_emis,"emission_voc_name",string_values, emt_att%nvoc)
1487	emt_att%voc_name=string_values
1488	IF (ALLOCATED(string_values)) DEALLOCATE(string_values)
1489
1490	!-- COMPOSITION VOC (2-DIMENSIONAL)
1491	!Allocate Array
1492	ALLOCATE(emt_att%voc_comp(1:emt_att%ncat,1:emt_att%nvoc))
1493	!Read-in Variable
1494	CALL get_variable(id_emis,"composition_voc",emt_att%voc_comp,1,emt_att%ncat,1,emt_att%nvoc)
1495	ENDIF
1496
1497	ENDDO !> ispec
1498
1499	!-- EMISSION_VALUES (4-DIMENSIONAL)
1500	!Calculate temporal dimension length
1501	CALL netcdf_data_input_get_dimension_length( id_emis, emt_att%dt_emission, 'time' )
1502
1503
1504	DO ispec=1,emt_att%nspec
1505
1506	!Allocation for the entire domain has to be done only for the first processor between all the subdomains
1507	IF ( .NOT. ALLOCATED( emt(ispec)%preproc_emission_data ) ) &
1508	ALLOCATE(emt(ispec)%preproc_emission_data(emt_att%dt_emission,1,1:ny+1,1:nx+1))
1509
1510	!> allocate variable where to pass emission values read from netcdf
1511	ALLOCATE(dum_var_4d(1:emt_att%dt_emission,1,nys+1:nyn+1,nxl+1:nxr+1))
1512
1513	!Read-in Variable
1514	CALL get_variable(id_emis,"emission_values",dum_var_4d,ispec,1,emt_att%dt_emission,1,1,nys,nyn,nxl,nxr)
1515
1516
1517	emt(ispec)%preproc_emission_data(:,1,nys+1:nyn+1,nxl+1:nxr+1) = &
1518	dum_var_4d(1:emt_att%dt_emission,1,nys+1:nyn+1,nxl+1:nxr+1)
1519
1520	DEALLOCATE ( dum_var_4d )
1521
1522	ENDDO
1523
1524	!-- UNITS
1525	CALL get_attribute(id_emis,"units",emt_att%units,.FALSE.,"emission_values")
1526
1527	ENDIF
1528
1529	CALL close_input_file( id_emis )
1530
1531	#endif
1532	ENDIF
1533
1534	END SUBROUTINE netcdf_data_input_chemistry_data
1535
1536	!------------------------------------------------------------------------------!
1537	! Description:
1538	! ------------
1539	!> Reads surface classification data, such as vegetation and soil type, etc. .
1540	!------------------------------------------------------------------------------!
1541	SUBROUTINE netcdf_data_input_surface_data
1542
1543	USE control_parameters, &
1544	ONLY: bc_lr_cyc, bc_ns_cyc, land_surface, plant_canopy, &
1545	urban_surface
1546
1547	USE indices, &
1548	ONLY: nbgp, nx, nxl, nxr,ny, nyn, nys
1549
1550
1551	IMPLICIT NONE
1552
1553	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names !< variable names in static input file
1554
1555	INTEGER(iwp) :: id_surf !< NetCDF id of input file
1556	INTEGER(iwp) :: k !< running index along z-direction
1557	INTEGER(iwp) :: k2 !< running index
1558	INTEGER(iwp) :: num_vars !< number of variables in input file
1559	INTEGER(iwp) :: nz_soil !< number of soil layers in file
1560
1561	!
1562	!-- If not static input file is available, skip this routine
1563	IF ( .NOT. input_pids_static ) RETURN
1564	!
1565	!-- Measure CPU time
1566	CALL cpu_log( log_point_s(82), 'NetCDF input', 'start' )
1567	!
1568	!-- Read plant canopy variables.
1569	IF ( plant_canopy ) THEN
1570	#if defined ( __netcdf )
1571	!
1572	!-- Open file in read-only mode
1573	CALL open_read_file( TRIM( input_file_static ) // &
1574	TRIM( coupling_char ) , id_surf )
1575	!
1576	!-- At first, inquire all variable names.
1577	!-- This will be used to check whether an optional input variable
1578	!-- exist or not.
1579	CALL inquire_num_variables( id_surf, num_vars )
1580
1581	ALLOCATE( var_names(1:num_vars) )
1582	CALL inquire_variable_names( id_surf, var_names )
1583
1584	!
1585	!-- Read leaf area density - resolved vegetation
1586	IF ( check_existence( var_names, 'lad' ) ) THEN
1587	leaf_area_density_f%from_file = .TRUE.
1588	CALL get_attribute( id_surf, char_fill, &
1589	leaf_area_density_f%fill, &
1590	.FALSE., 'lad' )
1591	!
1592	!-- Inquire number of vertical vegetation layer
1593	CALL netcdf_data_input_get_dimension_length( id_surf, &
1594	leaf_area_density_f%nz, &
1595	'zlad' )
1596	!
1597	!-- Allocate variable for leaf-area density
1598	ALLOCATE( leaf_area_density_f%var( 0:leaf_area_density_f%nz-1, &
1599	nys:nyn,nxl:nxr) )
1600
1601	CALL get_variable( id_surf, 'lad', leaf_area_density_f%var, &
1602	nxl, nxr, nys, nyn, &
1603	0, leaf_area_density_f%nz-1 )
1604
1605	ELSE
1606	leaf_area_density_f%from_file = .FALSE.
1607	ENDIF
1608
1609	!
1610	!-- Read basal area density - resolved vegetation
1611	IF ( check_existence( var_names, 'bad' ) ) THEN
1612	basal_area_density_f%from_file = .TRUE.
1613	CALL get_attribute( id_surf, char_fill, &
1614	basal_area_density_f%fill, &
1615	.FALSE., 'bad' )
1616	!
1617	!-- Inquire number of vertical vegetation layer
1618	CALL netcdf_data_input_get_dimension_length( id_surf, &
1619	basal_area_density_f%nz, &
1620	'zlad' )
1621	!
1622	!-- Allocate variable
1623	ALLOCATE( basal_area_density_f%var(0:basal_area_density_f%nz-1, &
1624	nys:nyn,nxl:nxr) )
1625
1626	CALL get_variable( id_surf, 'bad', basal_area_density_f%var, &
1627	nxl, nxr, nys, nyn, &
1628	0, basal_area_density_f%nz-1 )
1629	ELSE
1630	basal_area_density_f%from_file = .FALSE.
1631	ENDIF
1632
1633	!
1634	!-- Read root area density - resolved vegetation
1635	IF ( check_existence( var_names, 'root_area_dens_r' ) ) THEN
1636	root_area_density_lad_f%from_file = .TRUE.
1637	CALL get_attribute( id_surf, char_fill, &
1638	root_area_density_lad_f%fill, &
1639	.FALSE., 'root_area_dens_r' )
1640	!
1641	!-- Inquire number of vertical soil layers
1642	CALL netcdf_data_input_get_dimension_length( id_surf, &
1643	root_area_density_lad_f%nz, &
1644	'zsoil' )
1645	!
1646	!-- Allocate variable
1647	ALLOCATE( root_area_density_lad_f%var &
1648	(0:root_area_density_lad_f%nz-1, &
1649	nys:nyn,nxl:nxr) )
1650
1651	CALL get_variable( id_surf, 'root_area_dens_r', &
1652	root_area_density_lad_f%var, &
1653	nxl, nxr, nys, nyn, &
1654	0, root_area_density_lad_f%nz-1 )
1655	ELSE
1656	root_area_density_lad_f%from_file = .FALSE.
1657	ENDIF
1658	!
1659	!-- Finally, close input file
1660	CALL close_input_file( id_surf )
1661	#endif
1662	ENDIF
1663	!
1664	!-- Deallocate variable list. Will be re-allocated in case further
1665	!-- variables are read from file.
1666	IF ( ALLOCATED( var_names ) ) DEALLOCATE( var_names )
1667	!
1668	!-- Skip the following if no land-surface or urban-surface module are
1669	!-- applied. This case, no one of the following variables is used anyway.
1670	IF ( .NOT. land_surface .AND. .NOT. urban_surface ) RETURN
1671
1672	#if defined ( __netcdf )
1673	!
1674	!-- Open file in read-only mode
1675	CALL open_read_file( TRIM( input_file_static ) // &
1676	TRIM( coupling_char ) , id_surf )
1677	!
1678	!-- Inquire all variable names.
1679	!-- This will be used to check whether an optional input variable exist
1680	!-- or not.
1681	CALL inquire_num_variables( id_surf, num_vars )
1682
1683	ALLOCATE( var_names(1:num_vars) )
1684	CALL inquire_variable_names( id_surf, var_names )
1685	!
1686	!-- Read vegetation type and required attributes
1687	IF ( check_existence( var_names, 'vegetation_type' ) ) THEN
1688	vegetation_type_f%from_file = .TRUE.
1689	CALL get_attribute( id_surf, char_fill, &
1690	vegetation_type_f%fill, &
1691	.FALSE., 'vegetation_type' )
1692
1693	ALLOCATE ( vegetation_type_f%var(nys:nyn,nxl:nxr) )
1694
1695	CALL get_variable( id_surf, 'vegetation_type', &
1696	vegetation_type_f%var, nxl, nxr, nys, nyn )
1697	ELSE
1698	vegetation_type_f%from_file = .FALSE.
1699	ENDIF
1700
1701	!
1702	!-- Read soil type and required attributes
1703	IF ( check_existence( var_names, 'soil_type' ) ) THEN
1704	soil_type_f%from_file = .TRUE.
1705	!
1706	!-- Note, lod is currently not on file; skip for the moment
1707	! CALL get_attribute( id_surf, char_lod, &
1708	! soil_type_f%lod, &
1709	! .FALSE., 'soil_type' )
1710	CALL get_attribute( id_surf, char_fill, &
1711	soil_type_f%fill, &
1712	.FALSE., 'soil_type' )
1713
1714	IF ( soil_type_f%lod == 1 ) THEN
1715
1716	ALLOCATE ( soil_type_f%var_2d(nys:nyn,nxl:nxr) )
1717
1718	CALL get_variable( id_surf, 'soil_type', soil_type_f%var_2d, &
1719	nxl, nxr, nys, nyn )
1720
1721	ELSEIF ( soil_type_f%lod == 2 ) THEN
1722	!
1723	!-- Obtain number of soil layers from file.
1724	CALL netcdf_data_input_get_dimension_length( id_surf, nz_soil, &
1725	'zsoil' )
1726
1727	ALLOCATE ( soil_type_f%var_3d(0:nz_soil,nys:nyn,nxl:nxr) )
1728
1729	CALL get_variable( id_surf, 'soil_type', soil_type_f%var_3d, &
1730	nxl, nxr, nys, nyn, 0, nz_soil )
1731
1732	ENDIF
1733	ELSE
1734	soil_type_f%from_file = .FALSE.
1735	ENDIF
1736
1737	!
1738	!-- Read pavement type and required attributes
1739	IF ( check_existence( var_names, 'pavement_type' ) ) THEN
1740	pavement_type_f%from_file = .TRUE.
1741	CALL get_attribute( id_surf, char_fill, &
1742	pavement_type_f%fill, .FALSE., &
1743	'pavement_type' )
1744
1745	ALLOCATE ( pavement_type_f%var(nys:nyn,nxl:nxr) )
1746
1747	CALL get_variable( id_surf, 'pavement_type', pavement_type_f%var, &
1748	nxl, nxr, nys, nyn )
1749	ELSE
1750	pavement_type_f%from_file = .FALSE.
1751	ENDIF
1752
1753	!
1754	!-- Read water type and required attributes
1755	IF ( check_existence( var_names, 'water_type' ) ) THEN
1756	water_type_f%from_file = .TRUE.
1757	CALL get_attribute( id_surf, char_fill, water_type_f%fill, &
1758	.FALSE., 'water_type' )
1759
1760	ALLOCATE ( water_type_f%var(nys:nyn,nxl:nxr) )
1761
1762	CALL get_variable( id_surf, 'water_type', water_type_f%var, &
1763	nxl, nxr, nys, nyn )
1764
1765	ELSE
1766	water_type_f%from_file = .FALSE.
1767	ENDIF
1768	!
1769	!-- Read relative surface fractions of vegetation, pavement and water.
1770	IF ( check_existence( var_names, 'surface_fraction' ) ) THEN
1771	surface_fraction_f%from_file = .TRUE.
1772	CALL get_attribute( id_surf, char_fill, &
1773	surface_fraction_f%fill, &
1774	.FALSE., 'surface_fraction' )
1775	!
1776	!-- Inquire number of surface fractions
1777	CALL netcdf_data_input_get_dimension_length( id_surf, &
1778	surface_fraction_f%nf, &
1779	'nsurface_fraction' )
1780	!
1781	!-- Allocate dimension array and input array for surface fractions
1782	ALLOCATE( surface_fraction_f%nfracs(0:surface_fraction_f%nf-1) )
1783	ALLOCATE( surface_fraction_f%frac(0:surface_fraction_f%nf-1, &
1784	nys:nyn,nxl:nxr) )
1785	!
1786	!-- Get dimension of surface fractions
1787	CALL get_variable( id_surf, 'nsurface_fraction', &
1788	surface_fraction_f%nfracs )
1789	!
1790	!-- Read surface fractions
1791	CALL get_variable( id_surf, 'surface_fraction', &
1792	surface_fraction_f%frac, nxl, nxr, nys, nyn, &
1793	0, surface_fraction_f%nf-1 )
1794	ELSE
1795	surface_fraction_f%from_file = .FALSE.
1796	ENDIF
1797	!
1798	!-- Read building parameters and related information
1799	IF ( check_existence( var_names, 'building_pars' ) ) THEN
1800	building_pars_f%from_file = .TRUE.
1801	CALL get_attribute( id_surf, char_fill, &
1802	building_pars_f%fill, &
1803	.FALSE., 'building_pars' )
1804	!
1805	!-- Inquire number of building parameters
1806	CALL netcdf_data_input_get_dimension_length( id_surf, &
1807	building_pars_f%np, &
1808	'nbuilding_pars' )
1809	!
1810	!-- Allocate dimension array and input array for building parameters
1811	ALLOCATE( building_pars_f%pars(0:building_pars_f%np-1) )
1812	ALLOCATE( building_pars_f%pars_xy(0:building_pars_f%np-1, &
1813	nys:nyn,nxl:nxr) )
1814	!
1815	!-- Get dimension of building parameters
1816	CALL get_variable( id_surf, 'nbuilding_pars', &
1817	building_pars_f%pars )
1818	!
1819	!-- Read building_pars
1820	CALL get_variable( id_surf, 'building_pars', &
1821	building_pars_f%pars_xy, nxl, nxr, nys, nyn, &
1822	0, building_pars_f%np-1 )
1823	ELSE
1824	building_pars_f%from_file = .FALSE.
1825	ENDIF
1826
1827	!
1828	!-- Read albedo type and required attributes
1829	IF ( check_existence( var_names, 'albedo_type' ) ) THEN
1830	albedo_type_f%from_file = .TRUE.
1831	CALL get_attribute( id_surf, char_fill, albedo_type_f%fill, &
1832	.FALSE., 'albedo_type' )
1833
1834	ALLOCATE ( albedo_type_f%var(nys:nyn,nxl:nxr) )
1835
1836	CALL get_variable( id_surf, 'albedo_type', albedo_type_f%var, &
1837	nxl, nxr, nys, nyn )
1838	ELSE
1839	albedo_type_f%from_file = .FALSE.
1840	ENDIF
1841	!
1842	!-- Read albedo parameters and related information
1843	IF ( check_existence( var_names, 'albedo_pars' ) ) THEN
1844	albedo_pars_f%from_file = .TRUE.
1845	CALL get_attribute( id_surf, char_fill, albedo_pars_f%fill, &
1846	.FALSE., 'albedo_pars' )
1847	!
1848	!-- Inquire number of albedo parameters
1849	CALL netcdf_data_input_get_dimension_length( id_surf, &
1850	albedo_pars_f%np, &
1851	'nalbedo_pars' )
1852	!
1853	!-- Allocate dimension array and input array for albedo parameters
1854	ALLOCATE( albedo_pars_f%pars(0:albedo_pars_f%np-1) )
1855	ALLOCATE( albedo_pars_f%pars_xy(0:albedo_pars_f%np-1, &
1856	nys:nyn,nxl:nxr) )
1857	!
1858	!-- Get dimension of albedo parameters
1859	CALL get_variable( id_surf, 'nalbedo_pars', albedo_pars_f%pars )
1860
1861	CALL get_variable( id_surf, 'albedo_pars', albedo_pars_f%pars_xy, &
1862	nxl, nxr, nys, nyn, &
1863	0, albedo_pars_f%np-1 )
1864	ELSE
1865	albedo_pars_f%from_file = .FALSE.
1866	ENDIF
1867
1868	!
1869	!-- Read pavement parameters and related information
1870	IF ( check_existence( var_names, 'pavement_pars' ) ) THEN
1871	pavement_pars_f%from_file = .TRUE.
1872	CALL get_attribute( id_surf, char_fill, &
1873	pavement_pars_f%fill, &
1874	.FALSE., 'pavement_pars' )
1875	!
1876	!-- Inquire number of pavement parameters
1877	CALL netcdf_data_input_get_dimension_length( id_surf, &
1878	pavement_pars_f%np, &
1879	'npavement_pars' )
1880	!
1881	!-- Allocate dimension array and input array for pavement parameters
1882	ALLOCATE( pavement_pars_f%pars(0:pavement_pars_f%np-1) )
1883	ALLOCATE( pavement_pars_f%pars_xy(0:pavement_pars_f%np-1, &
1884	nys:nyn,nxl:nxr) )
1885	!
1886	!-- Get dimension of pavement parameters
1887	CALL get_variable( id_surf, 'npavement_pars', pavement_pars_f%pars )
1888
1889	CALL get_variable( id_surf, 'pavement_pars', pavement_pars_f%pars_xy,&
1890	nxl, nxr, nys, nyn, &
1891	0, pavement_pars_f%np-1 )
1892	ELSE
1893	pavement_pars_f%from_file = .FALSE.
1894	ENDIF
1895
1896	!
1897	!-- Read pavement subsurface parameters and related information
1898	IF ( check_existence( var_names, 'pavement_subsurface_pars' ) ) &
1899	THEN
1900	pavement_subsurface_pars_f%from_file = .TRUE.
1901	CALL get_attribute( id_surf, char_fill, &
1902	pavement_subsurface_pars_f%fill, &
1903	.FALSE., 'pavement_subsurface_pars' )
1904	!
1905	!-- Inquire number of parameters
1906	CALL netcdf_data_input_get_dimension_length( id_surf, &
1907	pavement_subsurface_pars_f%np, &
1908	'npavement_subsurface_pars' )
1909	!
1910	!-- Inquire number of soil layers
1911	CALL netcdf_data_input_get_dimension_length( id_surf, &
1912	pavement_subsurface_pars_f%nz, &
1913	'zsoil' )
1914	!
1915	!-- Allocate dimension array and input array for pavement parameters
1916	ALLOCATE( pavement_subsurface_pars_f%pars &
1917	(0:pavement_subsurface_pars_f%np-1) )
1918	ALLOCATE( pavement_subsurface_pars_f%pars_xyz &
1919	(0:pavement_subsurface_pars_f%np-1, &
1920	0:pavement_subsurface_pars_f%nz-1, &
1921	nys:nyn,nxl:nxr) )
1922	!
1923	!-- Get dimension of pavement parameters
1924	CALL get_variable( id_surf, 'npavement_subsurface_pars', &
1925	pavement_subsurface_pars_f%pars )
1926
1927	CALL get_variable( id_surf, 'pavement_subsurface_pars', &
1928	pavement_subsurface_pars_f%pars_xyz, &
1929	nxl, nxr, nys, nyn, &
1930	0, pavement_subsurface_pars_f%nz-1, &
1931	0, pavement_subsurface_pars_f%np-1 )
1932	ELSE
1933	pavement_subsurface_pars_f%from_file = .FALSE.
1934	ENDIF
1935
1936
1937	!
1938	!-- Read vegetation parameters and related information
1939	IF ( check_existence( var_names, 'vegetation_pars' ) ) THEN
1940	vegetation_pars_f%from_file = .TRUE.
1941	CALL get_attribute( id_surf, char_fill, &
1942	vegetation_pars_f%fill, &
1943	.FALSE., 'vegetation_pars' )
1944	!
1945	!-- Inquire number of vegetation parameters
1946	CALL netcdf_data_input_get_dimension_length( id_surf, &
1947	vegetation_pars_f%np, &
1948	'nvegetation_pars' )
1949	!
1950	!-- Allocate dimension array and input array for surface fractions
1951	ALLOCATE( vegetation_pars_f%pars(0:vegetation_pars_f%np-1) )
1952	ALLOCATE( vegetation_pars_f%pars_xy(0:vegetation_pars_f%np-1, &
1953	nys:nyn,nxl:nxr) )
1954	!
1955	!-- Get dimension of the parameters
1956	CALL get_variable( id_surf, 'nvegetation_pars', &
1957	vegetation_pars_f%pars )
1958
1959	CALL get_variable( id_surf, 'vegetation_pars', &
1960	vegetation_pars_f%pars_xy, nxl, nxr, nys, nyn, &
1961	0, vegetation_pars_f%np-1 )
1962	ELSE
1963	vegetation_pars_f%from_file = .FALSE.
1964	ENDIF
1965
1966	!
1967	!-- Read root parameters/distribution and related information
1968	IF ( check_existence( var_names, 'soil_pars' ) ) THEN
1969	soil_pars_f%from_file = .TRUE.
1970	CALL get_attribute( id_surf, char_fill, &
1971	soil_pars_f%fill, &
1972	.FALSE., 'soil_pars' )
1973
1974	CALL get_attribute( id_surf, char_lod, &
1975	soil_pars_f%lod, &
1976	.FALSE., 'soil_pars' )
1977
1978	!
1979	!-- Inquire number of soil parameters
1980	CALL netcdf_data_input_get_dimension_length( id_surf, &
1981	soil_pars_f%np, &
1982	'nsoil_pars' )
1983	!
1984	!-- Read parameters array
1985	ALLOCATE( soil_pars_f%pars(0:soil_pars_f%np-1) )
1986	CALL get_variable( id_surf, 'nsoil_pars', soil_pars_f%pars )
1987
1988	!
1989	!-- In case of level of detail 2, also inquire number of vertical
1990	!-- soil layers, allocate memory and read the respective dimension
1991	IF ( soil_pars_f%lod == 2 ) THEN
1992	CALL netcdf_data_input_get_dimension_length( id_surf, &
1993	soil_pars_f%nz, &
1994	'zsoil' )
1995
1996	ALLOCATE( soil_pars_f%layers(0:soil_pars_f%nz-1) )
1997	CALL get_variable( id_surf, 'zsoil', soil_pars_f%layers )
1998
1999	ENDIF
2000
2001	!
2002	!-- Read soil parameters, depending on level of detail
2003	IF ( soil_pars_f%lod == 1 ) THEN
2004	ALLOCATE( soil_pars_f%pars_xy(0:soil_pars_f%np-1, &
2005	nys:nyn,nxl:nxr) )
2006
2007	CALL get_variable( id_surf, 'soil_pars', soil_pars_f%pars_xy, &
2008	nxl, nxr, nys, nyn, 0, soil_pars_f%np-1 )
2009
2010	ELSEIF ( soil_pars_f%lod == 2 ) THEN
2011	ALLOCATE( soil_pars_f%pars_xyz(0:soil_pars_f%np-1, &
2012	0:soil_pars_f%nz-1, &
2013	nys:nyn,nxl:nxr) )
2014	CALL get_variable( id_surf, 'soil_pars', &
2015	soil_pars_f%pars_xyz, &
2016	nxl, nxr, nys, nyn, 0, soil_pars_f%nz-1, &
2017	0, soil_pars_f%np-1 )
2018
2019	ENDIF
2020	ELSE
2021	soil_pars_f%from_file = .FALSE.
2022	ENDIF
2023
2024	!
2025	!-- Read water parameters and related information
2026	IF ( check_existence( var_names, 'water_pars' ) ) THEN
2027	water_pars_f%from_file = .TRUE.
2028	CALL get_attribute( id_surf, char_fill, &
2029	water_pars_f%fill, &
2030	.FALSE., 'water_pars' )
2031	!
2032	!-- Inquire number of water parameters
2033	CALL netcdf_data_input_get_dimension_length( id_surf, &
2034	water_pars_f%np, &
2035	'nwater_pars' )
2036	!
2037	!-- Allocate dimension array and input array for water parameters
2038	ALLOCATE( water_pars_f%pars(0:water_pars_f%np-1) )
2039	ALLOCATE( water_pars_f%pars_xy(0:water_pars_f%np-1, &
2040	nys:nyn,nxl:nxr) )
2041	!
2042	!-- Get dimension of water parameters
2043	CALL get_variable( id_surf, 'nwater_pars', water_pars_f%pars )
2044
2045	CALL get_variable( id_surf, 'water_pars', water_pars_f%pars_xy, &
2046	nxl, nxr, nys, nyn, 0, water_pars_f%np-1 )
2047	ELSE
2048	water_pars_f%from_file = .FALSE.
2049	ENDIF
2050	!
2051	!-- Read root area density - parametrized vegetation
2052	IF ( check_existence( var_names, 'root_area_dens_s' ) ) THEN
2053	root_area_density_lsm_f%from_file = .TRUE.
2054	CALL get_attribute( id_surf, char_fill, &
2055	root_area_density_lsm_f%fill, &
2056	.FALSE., 'root_area_dens_s' )
2057	!
2058	!-- Obtain number of soil layers from file and allocate variable
2059	CALL netcdf_data_input_get_dimension_length( id_surf, &
2060	root_area_density_lsm_f%nz, &
2061	'zsoil' )
2062	ALLOCATE( root_area_density_lsm_f%var &
2063	(0:root_area_density_lsm_f%nz-1, &
2064	nys:nyn,nxl:nxr) )
2065
2066	!
2067	!-- Read root-area density
2068	CALL get_variable( id_surf, 'root_area_dens_s', &
2069	root_area_density_lsm_f%var, &
2070	nxl, nxr, nys, nyn, &
2071	0, root_area_density_lsm_f%nz-1 )
2072
2073	ELSE
2074	root_area_density_lsm_f%from_file = .FALSE.
2075	ENDIF
2076	!
2077	!-- Read street type and street crossing
2078	IF ( check_existence( var_names, 'street_type' ) ) THEN
2079	street_type_f%from_file = .TRUE.
2080	CALL get_attribute( id_surf, char_fill, &
2081	street_type_f%fill, .FALSE., &
2082	'street_type' )
2083
2084	ALLOCATE ( street_type_f%var(nys:nyn,nxl:nxr) )
2085
2086	CALL get_variable( id_surf, 'street_type', street_type_f%var, &
2087	nxl, nxr, nys, nyn )
2088	ELSE
2089	street_type_f%from_file = .FALSE.
2090	ENDIF
2091
2092	IF ( check_existence( var_names, 'street_crossing' ) ) THEN
2093	street_crossing_f%from_file = .TRUE.
2094	CALL get_attribute( id_surf, char_fill, &
2095	street_crossing_f%fill, .FALSE., &
2096	'street_crossing' )
2097
2098	ALLOCATE ( street_crossing_f%var(nys:nyn,nxl:nxr) )
2099
2100	CALL get_variable( id_surf, 'street_crossing', &
2101	street_crossing_f%var, nxl, nxr, nys, nyn )
2102
2103	ELSE
2104	street_crossing_f%from_file = .FALSE.
2105	ENDIF
2106	!
2107	!-- Still missing: root_resolved and building_surface_pars.
2108	!-- Will be implemented as soon as they are available.
2109
2110	!
2111	!-- Finally, close input file
2112	CALL close_input_file( id_surf )
2113	#endif
2114	!
2115	!-- End of CPU measurement
2116	CALL cpu_log( log_point_s(82), 'NetCDF input', 'stop' )
2117	!
2118	!-- Exchange ghost points for surface variables. Therefore, resize
2119	!-- variables.
2120	IF ( albedo_type_f%from_file ) THEN
2121	CALL resize_array_2d_int8( albedo_type_f%var, nys, nyn, nxl, nxr )
2122	CALL exchange_horiz_2d_byte( albedo_type_f%var, nys, nyn, nxl, nxr, &
2123	nbgp )
2124	ENDIF
2125	IF ( pavement_type_f%from_file ) THEN
2126	CALL resize_array_2d_int8( pavement_type_f%var, nys, nyn, nxl, nxr )
2127	CALL exchange_horiz_2d_byte( pavement_type_f%var, nys, nyn, nxl, nxr,&
2128	nbgp )
2129	ENDIF
2130	IF ( soil_type_f%from_file .AND. ALLOCATED( soil_type_f%var_2d ) ) THEN
2131	CALL resize_array_2d_int8( soil_type_f%var_2d, nys, nyn, nxl, nxr )
2132	CALL exchange_horiz_2d_byte( soil_type_f%var_2d, nys, nyn, nxl, nxr, &
2133	nbgp )
2134	ENDIF
2135	IF ( vegetation_type_f%from_file ) THEN
2136	CALL resize_array_2d_int8( vegetation_type_f%var, nys, nyn, nxl, nxr )
2137	CALL exchange_horiz_2d_byte( vegetation_type_f%var, nys, nyn, nxl, &
2138	nxr, nbgp )
2139	ENDIF
2140	IF ( water_type_f%from_file ) THEN
2141	CALL resize_array_2d_int8( water_type_f%var, nys, nyn, nxl, nxr )
2142	CALL exchange_horiz_2d_byte( water_type_f%var, nys, nyn, nxl, nxr, &
2143	nbgp )
2144	ENDIF
2145	!
2146	!-- Exchange ghost points for 3/4-D variables. For the sake of simplicity,
2147	!-- loop further dimensions to use 2D exchange routines. Unfortunately this
2148	!-- is necessary, else new MPI-data types need to be introduced just for
2149	!-- 2 variables.
2150	IF ( soil_type_f%from_file .AND. ALLOCATED( soil_type_f%var_3d ) ) &
2151	THEN
2152	CALL resize_array_3d_int8( soil_type_f%var_3d, 0, nz_soil, &
2153	nys, nyn, nxl, nxr )
2154	DO k = 0, nz_soil
2155	CALL exchange_horiz_2d_int( &
2156	soil_type_f%var_3d(k,:,:), nys, nyn, nxl, nxr, nbgp )
2157	ENDDO
2158	ENDIF
2159
2160	IF ( surface_fraction_f%from_file ) THEN
2161	CALL resize_array_3d_real( surface_fraction_f%frac, &
2162	0, surface_fraction_f%nf-1, &
2163	nys, nyn, nxl, nxr )
2164	DO k = 0, surface_fraction_f%nf-1
2165	CALL exchange_horiz_2d( surface_fraction_f%frac(k,:,:), nbgp )
2166	ENDDO
2167	ENDIF
2168
2169	IF ( building_pars_f%from_file ) THEN
2170	CALL resize_array_3d_real( building_pars_f%pars_xy, &
2171	0, building_pars_f%np-1, &
2172	nys, nyn, nxl, nxr )
2173	DO k = 0, building_pars_f%np-1
2174	CALL exchange_horiz_2d( building_pars_f%pars_xy(k,:,:), nbgp )
2175	ENDDO
2176	ENDIF
2177
2178	IF ( albedo_pars_f%from_file ) THEN
2179	CALL resize_array_3d_real( albedo_pars_f%pars_xy, &
2180	0, albedo_pars_f%np-1, &
2181	nys, nyn, nxl, nxr )
2182	DO k = 0, albedo_pars_f%np-1
2183	CALL exchange_horiz_2d( albedo_pars_f%pars_xy(k,:,:), nbgp )
2184	ENDDO
2185	ENDIF
2186
2187	IF ( pavement_pars_f%from_file ) THEN
2188	CALL resize_array_3d_real( pavement_pars_f%pars_xy, &
2189	0, pavement_pars_f%np-1, &
2190	nys, nyn, nxl, nxr )
2191	DO k = 0, pavement_pars_f%np-1
2192	CALL exchange_horiz_2d( pavement_pars_f%pars_xy(k,:,:), nbgp )
2193	ENDDO
2194	ENDIF
2195
2196	IF ( vegetation_pars_f%from_file ) THEN
2197	CALL resize_array_3d_real( vegetation_pars_f%pars_xy, &
2198	0, vegetation_pars_f%np-1, &
2199	nys, nyn, nxl, nxr )
2200	DO k = 0, vegetation_pars_f%np-1
2201	CALL exchange_horiz_2d( vegetation_pars_f%pars_xy(k,:,:), nbgp )
2202	ENDDO
2203	ENDIF
2204
2205	IF ( water_pars_f%from_file ) THEN
2206	CALL resize_array_3d_real( water_pars_f%pars_xy, &
2207	0, water_pars_f%np-1, &
2208	nys, nyn, nxl, nxr )
2209	DO k = 0, water_pars_f%np-1
2210	CALL exchange_horiz_2d( water_pars_f%pars_xy(k,:,:), nbgp )
2211	ENDDO
2212	ENDIF
2213
2214	IF ( root_area_density_lsm_f%from_file ) THEN
2215	CALL resize_array_3d_real( root_area_density_lsm_f%var, &
2216	0, root_area_density_lsm_f%nz-1, &
2217	nys, nyn, nxl, nxr )
2218	DO k = 0, root_area_density_lsm_f%nz-1
2219	CALL exchange_horiz_2d( root_area_density_lsm_f%var(k,:,:), nbgp )
2220	ENDDO
2221	ENDIF
2222
2223	IF ( soil_pars_f%from_file ) THEN
2224	IF ( soil_pars_f%lod == 1 ) THEN
2225
2226	CALL resize_array_3d_real( soil_pars_f%pars_xy, &
2227	0, soil_pars_f%np-1, &
2228	nys, nyn, nxl, nxr )
2229	DO k = 0, soil_pars_f%np-1
2230	CALL exchange_horiz_2d( soil_pars_f%pars_xy(k,:,:), nbgp )
2231	ENDDO
2232
2233	ELSEIF ( soil_pars_f%lod == 2 ) THEN
2234	CALL resize_array_4d_real( soil_pars_f%pars_xyz, &
2235	0, soil_pars_f%np-1, &
2236	0, soil_pars_f%nz-1, &
2237	nys, nyn, nxl, nxr )
2238
2239	DO k2 = 0, soil_pars_f%nz-1
2240	DO k = 0, soil_pars_f%np-1
2241	CALL exchange_horiz_2d( soil_pars_f%pars_xyz(k,k2,:,:), &
2242	nbgp )
2243	ENDDO
2244	ENDDO
2245	ENDIF
2246	ENDIF
2247
2248	IF ( pavement_subsurface_pars_f%from_file ) THEN
2249	CALL resize_array_4d_real( pavement_subsurface_pars_f%pars_xyz, &
2250	0, pavement_subsurface_pars_f%np-1, &
2251	0, pavement_subsurface_pars_f%nz-1, &
2252	nys, nyn, nxl, nxr )
2253
2254	DO k2 = 0, pavement_subsurface_pars_f%nz-1
2255	DO k = 0, pavement_subsurface_pars_f%np-1
2256	CALL exchange_horiz_2d( &
2257	pavement_subsurface_pars_f%pars_xyz(k,k2,:,:), nbgp )
2258	ENDDO
2259	ENDDO
2260	ENDIF
2261
2262	END SUBROUTINE netcdf_data_input_surface_data
2263
2264	!------------------------------------------------------------------------------!
2265	! Description:
2266	! ------------
2267	!> Reads uvem lookup table information.
2268	!------------------------------------------------------------------------------!
2269	SUBROUTINE netcdf_data_input_uvem
2270
2271	USE indices, &
2272	ONLY: nxl, nxr, nyn, nys
2273
2274	IMPLICIT NONE
2275
2276	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names !< variable names in static input file
2277
2278
2279	INTEGER(iwp) :: id_uvem !< NetCDF id of uvem lookup table input file
2280	INTEGER(iwp) :: nli = 35 !< dimension length of lookup table in x
2281	INTEGER(iwp) :: nlj = 9 !< dimension length of lookup table in y
2282	INTEGER(iwp) :: nlk = 90 !< dimension length of lookup table in z
2283	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
2284	!
2285	!-- Input via uv exposure model lookup table input
2286	IF ( input_pids_uvem ) THEN
2287
2288	#if defined ( __netcdf )
2289	!
2290	!-- Open file in read-only mode
2291	CALL open_read_file( TRIM( input_file_uvem ) // &
2292	TRIM( coupling_char ), id_uvem )
2293	!
2294	!-- At first, inquire all variable names.
2295	!-- This will be used to check whether an input variable exist or not.
2296	CALL inquire_num_variables( id_uvem, num_vars )
2297	!
2298	!-- Allocate memory to store variable names and inquire them.
2299	ALLOCATE( var_names(1:num_vars) )
2300	CALL inquire_variable_names( id_uvem, var_names )
2301	!
2302	!-- uvem integration
2303	IF ( check_existence( var_names, 'int_factors' ) ) THEN
2304	uvem_integration_f%from_file = .TRUE.
2305	!
2306	!-- Input 2D uvem integration.
2307	ALLOCATE ( uvem_integration_f%var(0:nlj,0:nli) )
2308
2309	CALL get_variable( id_uvem, 'int_factors', uvem_integration_f%var, 0, nli, 0, nlj )
2310	ELSE
2311	uvem_integration_f%from_file = .FALSE.
2312	ENDIF
2313	!
2314	!-- uvem irradiance
2315	IF ( check_existence( var_names, 'irradiance' ) ) THEN
2316	uvem_irradiance_f%from_file = .TRUE.
2317	!
2318	!-- Input 2D uvem irradiance.
2319	ALLOCATE ( uvem_irradiance_f%var(0:nlk, 0:2) )
2320
2321	CALL get_variable( id_uvem, 'irradiance', uvem_irradiance_f%var, 0, 2, 0, nlk )
2322	ELSE
2323	uvem_irradiance_f%from_file = .FALSE.
2324	ENDIF
2325	!
2326	!-- uvem porjection areas
2327	IF ( check_existence( var_names, 'projarea' ) ) THEN
2328	uvem_projarea_f%from_file = .TRUE.
2329	!
2330	!-- Input 3D uvem projection area (human geometgry)
2331	ALLOCATE ( uvem_projarea_f%var(0:2,0:nlj,0:nli) )
2332
2333	CALL get_variable( id_uvem, 'projarea', uvem_projarea_f%var, 0, nli, 0, nlj, 0, 2 )
2334	ELSE
2335	uvem_projarea_f%from_file = .FALSE.
2336	ENDIF
2337	!
2338	!-- uvem radiance
2339	IF ( check_existence( var_names, 'radiance' ) ) THEN
2340	uvem_radiance_f%from_file = .TRUE.
2341	!
2342	!-- Input 3D uvem radiance
2343	ALLOCATE ( uvem_radiance_f%var(0:nlk,0:nlj,0:nli) )
2344
2345	CALL get_variable( id_uvem, 'radiance', uvem_radiance_f%var, 0, nli, 0, nlj, 0, nlk )
2346	ELSE
2347	uvem_radiance_f%from_file = .FALSE.
2348	ENDIF
2349	!
2350	!-- Read building obstruction
2351	IF ( check_existence( var_names, 'obstruction' ) ) THEN
2352	building_obstruction_full%from_file = .TRUE.
2353	!-- Input 3D uvem building obstruction
2354	ALLOCATE ( building_obstruction_full%var_3d(0:44,0:2,0:2) )
2355	CALL get_variable( id_uvem, 'obstruction', building_obstruction_full%var_3d,0, 2, 0, 2, 0, 44 )
2356	ELSE
2357	building_obstruction_full%from_file = .FALSE.
2358	ENDIF
2359	!
2360	IF ( check_existence( var_names, 'obstruction' ) ) THEN
2361	building_obstruction_f%from_file = .TRUE.
2362	!
2363	!-- Input 3D uvem building obstruction
2364	ALLOCATE ( building_obstruction_f%var_3d(0:44,nys:nyn,nxl:nxr) )
2365	!
2366	CALL get_variable( id_uvem, 'obstruction', building_obstruction_f%var_3d, &
2367	nxl, nxr, nys, nyn, 0, 44 )
2368	ELSE
2369	building_obstruction_f%from_file = .FALSE.
2370	ENDIF
2371	!
2372	!-- Close uvem lookup table input file
2373	CALL close_input_file( id_uvem )
2374	#else
2375	CONTINUE
2376	#endif
2377	ENDIF
2378	END SUBROUTINE netcdf_data_input_uvem
2379
2380	!------------------------------------------------------------------------------!
2381	! Description:
2382	! ------------
2383	!> Reads orography and building information.
2384	!------------------------------------------------------------------------------!
2385	SUBROUTINE netcdf_data_input_topo
2386
2387	USE control_parameters, &
2388	ONLY: bc_lr_cyc, bc_ns_cyc, message_string, topography
2389
2390	USE indices, &
2391	ONLY: nbgp, nx, nxl, nxr, ny, nyn, nys, nzb
2392
2393
2394	IMPLICIT NONE
2395
2396	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names !< variable names in static input file
2397
2398
2399	INTEGER(iwp) :: i !< running index along x-direction
2400	INTEGER(iwp) :: ii !< running index for IO blocks
2401	INTEGER(iwp) :: id_topo !< NetCDF id of topograhy input file
2402	INTEGER(iwp) :: j !< running index along y-direction
2403	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
2404	INTEGER(iwp) :: skip_n_rows !< counting variable to skip rows while reading topography file
2405
2406	REAL(wp) :: dum !< dummy variable to skip columns while reading topography file
2407	!
2408	!-- CPU measurement
2409	CALL cpu_log( log_point_s(83), 'NetCDF/ASCII input topo', 'start' )
2410
2411	!
2412	!-- Input via palm-input data standard
2413	IF ( input_pids_static ) THEN
2414	#if defined ( __netcdf )
2415	!
2416	!-- Open file in read-only mode
2417	CALL open_read_file( TRIM( input_file_static ) // &
2418	TRIM( coupling_char ), id_topo )
2419	!
2420	!-- At first, inquire all variable names.
2421	!-- This will be used to check whether an input variable exist
2422	!-- or not.
2423	CALL inquire_num_variables( id_topo, num_vars )
2424	!
2425	!-- Allocate memory to store variable names and inquire them.
2426	ALLOCATE( var_names(1:num_vars) )
2427	CALL inquire_variable_names( id_topo, var_names )
2428	!
2429	!-- Read x, y - dimensions. Only required for consistency checks.
2430	CALL netcdf_data_input_get_dimension_length( id_topo, dim_static%nx, 'x' )
2431	CALL netcdf_data_input_get_dimension_length( id_topo, dim_static%ny, 'y' )
2432	ALLOCATE( dim_static%x(0:dim_static%nx-1) )
2433	ALLOCATE( dim_static%y(0:dim_static%ny-1) )
2434	CALL get_variable( id_topo, 'x', dim_static%x )
2435	CALL get_variable( id_topo, 'y', dim_static%y )
2436	!
2437	!-- Terrain height. First, get variable-related _FillValue attribute
2438	IF ( check_existence( var_names, 'zt' ) ) THEN
2439	terrain_height_f%from_file = .TRUE.
2440	CALL get_attribute( id_topo, char_fill, terrain_height_f%fill, &
2441	.FALSE., 'zt' )
2442	!
2443	!-- Input 2D terrain height.
2444	ALLOCATE ( terrain_height_f%var(nys:nyn,nxl:nxr) )
2445
2446	CALL get_variable( id_topo, 'zt', terrain_height_f%var, &
2447	nxl, nxr, nys, nyn )
2448
2449	ELSE
2450	terrain_height_f%from_file = .FALSE.
2451	ENDIF
2452
2453	!
2454	!-- Read building height. First, read its _FillValue attribute,
2455	!-- as well as lod attribute
2456	buildings_f%from_file = .FALSE.
2457	IF ( check_existence( var_names, 'buildings_2d' ) ) THEN
2458	buildings_f%from_file = .TRUE.
2459	CALL get_attribute( id_topo, char_lod, buildings_f%lod, &
2460	.FALSE., 'buildings_2d' )
2461
2462	CALL get_attribute( id_topo, char_fill, buildings_f%fill1, &
2463	.FALSE., 'buildings_2d' )
2464
2465	!
2466	!-- Read 2D buildings
2467	IF ( buildings_f%lod == 1 ) THEN
2468	ALLOCATE ( buildings_f%var_2d(nys:nyn,nxl:nxr) )
2469
2470	CALL get_variable( id_topo, 'buildings_2d', &
2471	buildings_f%var_2d, &
2472	nxl, nxr, nys, nyn )
2473	ELSE
2474	message_string = 'NetCDF attribute lod ' // &
2475	'(level of detail) is not set ' // &
2476	'properly for buildings_2d.'
2477	CALL message( 'netcdf_data_input_mod', 'PA0540', &
2478	1, 2, 0, 6, 0 )
2479	ENDIF
2480	ENDIF
2481	!
2482	!-- If available, also read 3D building information. If both are
2483	!-- available, use 3D information.
2484	IF ( check_existence( var_names, 'buildings_3d' ) ) THEN
2485	buildings_f%from_file = .TRUE.
2486	CALL get_attribute( id_topo, char_lod, buildings_f%lod, &
2487	.FALSE., 'buildings_3d' )
2488
2489	CALL get_attribute( id_topo, char_fill, buildings_f%fill2, &
2490	.FALSE., 'buildings_3d' )
2491
2492	CALL netcdf_data_input_get_dimension_length( id_topo, &
2493	buildings_f%nz, 'z' )
2494	!
2495	!-- Read 3D buildings
2496	IF ( buildings_f%lod == 2 ) THEN
2497	ALLOCATE( buildings_f%z(nzb:buildings_f%nz-1) )
2498	CALL get_variable( id_topo, 'z', buildings_f%z )
2499
2500	ALLOCATE( buildings_f%var_3d(nzb:buildings_f%nz-1, &
2501	nys:nyn,nxl:nxr) )
2502	buildings_f%var_3d = 0
2503
2504	CALL get_variable( id_topo, 'buildings_3d', &
2505	buildings_f%var_3d, &
2506	nxl, nxr, nys, nyn, 0, buildings_f%nz-1 )
2507	ELSE
2508	message_string = 'NetCDF attribute lod ' // &
2509	'(level of detail) is not set ' // &
2510	'properly for buildings_3d.'
2511	CALL message( 'netcdf_data_input_mod', 'PA0541', &
2512	1, 2, 0, 6, 0 )
2513	ENDIF
2514	ENDIF
2515	!
2516	!-- Read building IDs and its FillValue attribute. Further required
2517	!-- for mapping buildings on top of orography.
2518	IF ( check_existence( var_names, 'building_id' ) ) THEN
2519	building_id_f%from_file = .TRUE.
2520	CALL get_attribute( id_topo, char_fill, &
2521	building_id_f%fill, .FALSE., &
2522	'building_id' )
2523
2524	ALLOCATE ( building_id_f%var(nys:nyn,nxl:nxr) )
2525
2526	CALL get_variable( id_topo, 'building_id', building_id_f%var, &
2527	nxl, nxr, nys, nyn )
2528	ELSE
2529	building_id_f%from_file = .FALSE.
2530	ENDIF
2531	!
2532	!-- Read building_type and required attributes.
2533	IF ( check_existence( var_names, 'building_type' ) ) THEN
2534	building_type_f%from_file = .TRUE.
2535	CALL get_attribute( id_topo, char_fill, &
2536	building_type_f%fill, .FALSE., &
2537	'building_type' )
2538
2539	ALLOCATE ( building_type_f%var(nys:nyn,nxl:nxr) )
2540
2541	CALL get_variable( id_topo, 'building_type', building_type_f%var, &
2542	nxl, nxr, nys, nyn )
2543
2544	ELSE
2545	building_type_f%from_file = .FALSE.
2546	ENDIF
2547	!
2548	!-- Close topography input file
2549	CALL close_input_file( id_topo )
2550	#else
2551	CONTINUE
2552	#endif
2553	!
2554	!-- ASCII input
2555	ELSEIF ( TRIM( topography ) == 'read_from_file' ) THEN
2556
2557	DO ii = 0, io_blocks-1
2558	IF ( ii == io_group ) THEN
2559
2560	OPEN( 90, FILE='TOPOGRAPHY_DATA'//TRIM( coupling_char ), &
2561	STATUS='OLD', FORM='FORMATTED', ERR=10 )
2562	!
2563	!-- Read topography PE-wise. Rows are read from nyn to nys, columns
2564	!-- are read from nxl to nxr. At first, ny-nyn rows need to be skipped.
2565	skip_n_rows = 0
2566	DO WHILE ( skip_n_rows < ny - nyn )
2567	READ( 90, * )
2568	skip_n_rows = skip_n_rows + 1
2569	ENDDO
2570	!
2571	!-- Read data from nyn to nys and nxl to nxr. Therefore, skip
2572	!-- column until nxl-1 is reached
2573	ALLOCATE ( buildings_f%var_2d(nys:nyn,nxl:nxr) )
2574	DO j = nyn, nys, -1
2575	READ( 90, *, ERR=11, END=11 ) &
2576	( dum, i = 0, nxl-1 ), &
2577	( buildings_f%var_2d(j,i), i = nxl, nxr )
2578	ENDDO
2579
2580	GOTO 12
2581
2582	10 message_string = 'file TOPOGRAPHY_DATA'// &
2583	TRIM( coupling_char )// ' does not exist'
2584	CALL message( 'netcdf_data_input_mod', 'PA0208', 1, 2, 0, 6, 0 )
2585
2586	11 message_string = 'errors in file TOPOGRAPHY_DATA'// &
2587	TRIM( coupling_char )
2588	CALL message( 'netcdf_data_input_mod', 'PA0209', 2, 2, 0, 6, 0 )
2589
2590	12 CLOSE( 90 )
2591	buildings_f%from_file = .TRUE.
2592
2593	ENDIF
2594	#if defined( __parallel )
2595	CALL MPI_BARRIER( comm2d, ierr )
2596	#endif
2597	ENDDO
2598
2599	ENDIF
2600	!
2601	!-- End of CPU measurement
2602	CALL cpu_log( log_point_s(83), 'NetCDF/ASCII input topo', 'stop' )
2603	!
2604	!-- Check for minimum requirement to setup building topography. If buildings
2605	!-- are provided, also an ID and a type are required.
2606	!-- Note, doing this check in check_parameters
2607	!-- will be too late (data will be used for grid inititialization before).
2608	IF ( input_pids_static ) THEN
2609	IF ( buildings_f%from_file .AND. &
2610	.NOT. building_id_f%from_file ) THEN
2611	message_string = 'If building heigths are prescribed in ' // &
2612	'static input file, also an ID is required.'
2613	CALL message( 'netcdf_data_input_mod', 'PA0542', 1, 2, 0, 6, 0 )
2614	ENDIF
2615	ENDIF
2616	!
2617	!-- In case no terrain height is provided by static input file, allocate
2618	!-- array nevertheless and set terrain height to 0, which simplifies
2619	!-- topography initialization.
2620	IF ( .NOT. terrain_height_f%from_file ) THEN
2621	ALLOCATE ( terrain_height_f%var(nys:nyn,nxl:nxr) )
2622	terrain_height_f%var = 0.0_wp
2623	ENDIF
2624	!
2625	!-- Finally, exchange 1 ghost point for building ID and type.
2626	!-- In case of non-cyclic boundary conditions set Neumann conditions at the
2627	!-- lateral boundaries.
2628	IF ( building_id_f%from_file ) THEN
2629	CALL resize_array_2d_int32( building_id_f%var, nys, nyn, nxl, nxr )
2630	CALL exchange_horiz_2d_int( building_id_f%var, nys, nyn, nxl, nxr, &
2631	nbgp )
2632	ENDIF
2633
2634	IF ( building_type_f%from_file ) THEN
2635	CALL resize_array_2d_int8( building_type_f%var, nys, nyn, nxl, nxr )
2636	CALL exchange_horiz_2d_byte( building_type_f%var, nys, nyn, nxl, nxr, &
2637	nbgp )
2638	ENDIF
2639
2640	END SUBROUTINE netcdf_data_input_topo
2641
2642	!------------------------------------------------------------------------------!
2643	! Description:
2644	! ------------
2645	!> Reads initialization data of u, v, w, pt, q, geostrophic wind components,
2646	!> as well as soil moisture and soil temperature, derived from larger-scale
2647	!> model (COSMO) by Inifor.
2648	!------------------------------------------------------------------------------!
2649	SUBROUTINE netcdf_data_input_init_3d
2650
2651	USE arrays_3d, &
2652	ONLY: q, pt, u, v, w, zu, zw
2653
2654	USE control_parameters, &
2655	ONLY: bc_lr_cyc, bc_ns_cyc, humidity, message_string, neutral
2656
2657	USE indices, &
2658	ONLY: nx, nxl, nxlu, nxr, ny, nyn, nys, nysv, nzb, nz, nzt
2659
2660	IMPLICIT NONE
2661
2662	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names
2663
2664	LOGICAL :: dynamic_3d = .TRUE. !< flag indicating that 3D data is read from dynamic file
2665
2666	INTEGER(iwp) :: id_dynamic !< NetCDF id of dynamic input file
2667	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
2668
2669	LOGICAL :: check_passed !< flag indicating if a check passed
2670
2671	!
2672	!-- Skip routine if no input file with dynamic input data is available.
2673	IF ( .NOT. input_pids_dynamic ) RETURN
2674	!
2675	!-- Please note, Inifor is designed to provide initial data for u and v for
2676	!-- the prognostic grid points in case of lateral Dirichlet conditions.
2677	!-- This means that Inifor provides data from nxlu:nxr (for u) and
2678	!-- from nysv:nyn (for v) at the left and south domain boundary, respectively.
2679	!-- However, as work-around for the moment, PALM will run with cyclic
2680	!-- conditions and will be initialized with data provided by Inifor
2681	!-- boundaries in case of Dirichlet.
2682	!-- Hence, simply set set nxlu/nysv to 1 (will be reset to its original value
2683	!-- at the end of this routine.
2684	IF ( bc_lr_cyc .AND. nxl == 0 ) nxlu = 1
2685	IF ( bc_ns_cyc .AND. nys == 0 ) nysv = 1
2686
2687	!
2688	!-- CPU measurement
2689	CALL cpu_log( log_point_s(85), 'NetCDF input init', 'start' )
2690
2691	#if defined ( __netcdf )
2692	!
2693	!-- Open file in read-only mode
2694	CALL open_read_file( TRIM( input_file_dynamic ) // &
2695	TRIM( coupling_char ), id_dynamic )
2696
2697	!
2698	!-- At first, inquire all variable names.
2699	CALL inquire_num_variables( id_dynamic, num_vars )
2700	!
2701	!-- Allocate memory to store variable names.
2702	ALLOCATE( var_names(1:num_vars) )
2703	CALL inquire_variable_names( id_dynamic, var_names )
2704	!
2705	!-- Read vertical dimension of scalar und w grid.
2706	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nzu, 'z' )
2707	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nzw, 'zw' )
2708	!
2709	!-- Read also the horizontal dimensions. These are used just used fo
2710	!-- checking the compatibility with the PALM grid before reading.
2711	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nx, 'x' )
2712	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nxu, 'xu' )
2713	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%ny, 'y' )
2714	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nyv, 'yv' )
2715
2716	!
2717	!-- Check for correct horizontal and vertical dimension. Please note,
2718	!-- checks are performed directly here and not called from
2719	!-- check_parameters as some varialbes are still not allocated there.
2720	!-- Moreover, please note, u- and v-grid has 1 grid point less on
2721	!-- Inifor grid.
2722	IF ( init_3d%nx-1 /= nx .OR. init_3d%nxu-1 /= nx - 1 .OR. &
2723	init_3d%ny-1 /= ny .OR. init_3d%nyv-1 /= ny - 1 ) THEN
2724	message_string = 'Number of inifor horizontal grid points '// &
2725	'does not match the number of numeric grid '// &
2726	'points.'
2727	CALL message( 'netcdf_data_input_mod', 'PA0543', 1, 2, 0, 6, 0 )
2728	ENDIF
2729
2730	IF ( init_3d%nzu /= nz ) THEN
2731	message_string = 'Number of inifor vertical grid points ' // &
2732	'does not match the number of numeric grid '// &
2733	'points.'
2734	CALL message( 'netcdf_data_input_mod', 'PA0543', 1, 2, 0, 6, 0 )
2735	ENDIF
2736	!
2737	!-- Read vertical dimensions. Later, these are required for eventual
2738	!-- inter- and extrapolations of the initialization data.
2739	IF ( check_existence( var_names, 'z' ) ) THEN
2740	ALLOCATE( init_3d%zu_atmos(1:init_3d%nzu) )
2741	CALL get_variable( id_dynamic, 'z', init_3d%zu_atmos )
2742	ENDIF
2743	IF ( check_existence( var_names, 'zw' ) ) THEN
2744	ALLOCATE( init_3d%zw_atmos(1:init_3d%nzw) )
2745	CALL get_variable( id_dynamic, 'zw', init_3d%zw_atmos )
2746	ENDIF
2747	!
2748	!-- Check for consistency between vertical coordinates in dynamic
2749	!-- driver and numeric grid.
2750	!-- Please note, depending on compiler options both may be
2751	!-- equal up to a certain threshold, and differences between
2752	!-- the numeric grid and vertical coordinate in the driver can built-
2753	!-- up to 10E-1-10E-0 m. For this reason, the check is performed not
2754	!-- for exactly matching values.
2755	IF ( ANY( ABS( zu(1:nzt) - init_3d%zu_atmos(1:init_3d%nzu) ) &
2756	> 10E-1 ) .OR. &
2757	ANY( ABS( zw(1:nzt-1) - init_3d%zw_atmos(1:init_3d%nzw) ) &
2758	> 10E-1 ) ) THEN
2759	message_string = 'Vertical grid in dynamic driver does not '// &
2760	'match the numeric grid.'
2761	CALL message( 'netcdf_data_input_mod', 'PA0543', 1, 2, 0, 6, 0 )
2762	ENDIF
2763	!
2764	!-- Read initial geostrophic wind components at
2765	!-- t = 0 (index 1 in file).
2766	IF ( check_existence( var_names, 'ls_forcing_ug' ) ) THEN
2767	ALLOCATE( init_3d%ug_init(nzb:nzt+1) )
2768	init_3d%ug_init = 0.0_wp
2769
2770	CALL get_variable_pr( id_dynamic, 'ls_forcing_ug', 1, &
2771	init_3d%ug_init(1:nzt) )
2772	!
2773	!-- Set top-boundary condition (Neumann)
2774	init_3d%ug_init(nzt+1) = init_3d%ug_init(nzt)
2775
2776	init_3d%from_file_ug = .TRUE.
2777	ELSE
2778	init_3d%from_file_ug = .FALSE.
2779	ENDIF
2780	IF ( check_existence( var_names, 'ls_forcing_vg' ) ) THEN
2781	ALLOCATE( init_3d%vg_init(nzb:nzt+1) )
2782	init_3d%vg_init = 0.0_wp
2783
2784	CALL get_variable_pr( id_dynamic, 'ls_forcing_vg', 1, &
2785	init_3d%vg_init(1:nzt) )
2786	!
2787	!-- Set top-boundary condition (Neumann)
2788	init_3d%vg_init(nzt+1) = init_3d%vg_init(nzt)
2789
2790	init_3d%from_file_vg = .TRUE.
2791	ELSE
2792	init_3d%from_file_vg = .FALSE.
2793	ENDIF
2794	!
2795	!-- Read inital 3D data of u, v, w, pt and q,
2796	!-- derived from COSMO model. Read PE-wise yz-slices.
2797	!-- Please note, the u-, v- and w-component are defined on different
2798	!-- grids with one element less in the x-, y-,
2799	!-- and z-direction, respectively. Hence, reading is subdivided
2800	!-- into separate loops.
2801	!-- Read u-component
2802	IF ( check_existence( var_names, 'init_atmosphere_u' ) ) THEN
2803	!
2804	!-- Read attributes for the fill value and level-of-detail
2805	CALL get_attribute( id_dynamic, char_fill, init_3d%fill_u, &
2806	.FALSE., 'init_atmosphere_u' )
2807	CALL get_attribute( id_dynamic, char_lod, init_3d%lod_u, &
2808	.FALSE., 'init_atmosphere_u' )
2809	!
2810	!-- level-of-detail 1 - read initialization profile
2811	IF ( init_3d%lod_u == 1 ) THEN
2812	ALLOCATE( init_3d%u_init(nzb:nzt+1) )
2813	init_3d%u_init = 0.0_wp
2814
2815	CALL get_variable( id_dynamic, 'init_atmosphere_u', &
2816	init_3d%u_init(nzb+1:nzt) )
2817	!
2818	!-- Set top-boundary condition (Neumann)
2819	init_3d%u_init(nzt+1) = init_3d%u_init(nzt)
2820	!
2821	!-- level-of-detail 2 - read 3D initialization data
2822	ELSEIF ( init_3d%lod_u == 2 ) THEN
2823	CALL get_variable( id_dynamic, 'init_atmosphere_u', &
2824	u(nzb+1:nzt,nys:nyn,nxlu:nxr), &
2825	nxlu, nys+1, nzb+1, &
2826	nxr-nxlu+1, nyn-nys+1, init_3d%nzu, &
2827	dynamic_3d )
2828	!
2829	!-- Set value at leftmost model grid point nxl = 0. This is because
2830	!-- Inifor provides data only from 1:nx-1 since it assumes non-cyclic
2831	!-- conditions.
2832	IF ( nxl == 0 ) &
2833	u(nzb+1:nzt,nys:nyn,nxl) = u(nzb+1:nzt,nys:nyn,nxlu)
2834	!
2835	!-- Set bottom and top-boundary
2836	u(nzb,:,:) = u(nzb+1,:,:)
2837	u(nzt+1,:,:) = u(nzt,:,:)
2838
2839	ENDIF
2840	init_3d%from_file_u = .TRUE.
2841	ELSE
2842	message_string = 'Missing initial data for u-component'
2843	CALL message( 'netcdf_data_input_mod', 'PA0544', 1, 2, 0, 6, 0 )
2844	ENDIF
2845	!
2846	!-- Read v-component
2847	IF ( check_existence( var_names, 'init_atmosphere_v' ) ) THEN
2848	!
2849	!-- Read attributes for the fill value and level-of-detail
2850	CALL get_attribute( id_dynamic, char_fill, init_3d%fill_v, &
2851	.FALSE., 'init_atmosphere_v' )
2852	CALL get_attribute( id_dynamic, char_lod, init_3d%lod_v, &
2853	.FALSE., 'init_atmosphere_v' )
2854	!
2855	!-- level-of-detail 1 - read initialization profile
2856	IF ( init_3d%lod_v == 1 ) THEN
2857	ALLOCATE( init_3d%v_init(nzb:nzt+1) )
2858	init_3d%v_init = 0.0_wp
2859
2860	CALL get_variable( id_dynamic, 'init_atmosphere_v', &
2861	init_3d%v_init(nzb+1:nzt) )
2862	!
2863	!-- Set top-boundary condition (Neumann)
2864	init_3d%v_init(nzt+1) = init_3d%v_init(nzt)
2865	!
2866	!-- level-of-detail 2 - read 3D initialization data
2867	ELSEIF ( init_3d%lod_v == 2 ) THEN
2868
2869	CALL get_variable( id_dynamic, 'init_atmosphere_v', &
2870	v(nzb+1:nzt,nysv:nyn,nxl:nxr), &
2871	nxl+1, nysv, nzb+1, &
2872	nxr-nxl+1, nyn-nysv+1, init_3d%nzu, &
2873	dynamic_3d )
2874	!
2875	!-- Set value at southmost model grid point nys = 0. This is because
2876	!-- Inifor provides data only from 1:ny-1 since it assumes non-cyclic
2877	!-- conditions.
2878	IF ( nys == 0 ) &
2879	v(nzb+1:nzt,nys,nxl:nxr) = v(nzb+1:nzt,nysv,nxl:nxr)
2880	!
2881	!-- Set bottom and top-boundary
2882	v(nzb,:,:) = v(nzb+1,:,:)
2883	v(nzt+1,:,:) = v(nzt,:,:)
2884
2885	ENDIF
2886	init_3d%from_file_v = .TRUE.
2887	ELSE
2888	message_string = 'Missing initial data for v-component'
2889	CALL message( 'netcdf_data_input_mod', 'PA0544', 1, 2, 0, 6, 0 )
2890	ENDIF
2891	!
2892	!-- Read w-component
2893	IF ( check_existence( var_names, 'init_atmosphere_w' ) ) THEN
2894	!
2895	!-- Read attributes for the fill value and level-of-detail
2896	CALL get_attribute( id_dynamic, char_fill, init_3d%fill_w, &
2897	.FALSE., 'init_atmosphere_w' )
2898	CALL get_attribute( id_dynamic, char_lod, init_3d%lod_w, &
2899	.FALSE., 'init_atmosphere_w' )
2900	!
2901	!-- level-of-detail 1 - read initialization profile
2902	IF ( init_3d%lod_w == 1 ) THEN
2903	ALLOCATE( init_3d%w_init(nzb:nzt+1) )
2904	init_3d%w_init = 0.0_wp
2905
2906	CALL get_variable( id_dynamic, 'init_atmosphere_w', &
2907	init_3d%w_init(nzb+1:nzt-1) )
2908	!
2909	!-- Set top-boundary condition (Neumann)
2910	init_3d%w_init(nzt:nzt+1) = init_3d%w_init(nzt-1)
2911	!
2912	!-- level-of-detail 2 - read 3D initialization data
2913	ELSEIF ( init_3d%lod_w == 2 ) THEN
2914
2915	CALL get_variable( id_dynamic, 'init_atmosphere_w', &
2916	w(nzb+1:nzt-1,nys:nyn,nxl:nxr), &
2917	nxl+1, nys+1, nzb+1, &
2918	nxr-nxl+1, nyn-nys+1, init_3d%nzw, &
2919	dynamic_3d )
2920	!
2921	!-- Set bottom and top-boundary
2922	w(nzb,:,:) = 0.0_wp
2923	w(nzt,:,:) = w(nzt-1,:,:)
2924	w(nzt+1,:,:) = w(nzt-1,:,:)
2925
2926	ENDIF
2927	init_3d%from_file_w = .TRUE.
2928	ELSE
2929	message_string = 'Missing initial data for w-component'
2930	CALL message( 'netcdf_data_input_mod', 'PA0544', 1, 2, 0, 6, 0 )
2931	ENDIF
2932	!
2933	!-- Read potential temperature
2934	IF ( .NOT. neutral ) THEN
2935	IF ( check_existence( var_names, 'init_atmosphere_pt' ) ) THEN
2936	!
2937	!-- Read attributes for the fill value and level-of-detail
2938	CALL get_attribute( id_dynamic, char_fill, init_3d%fill_pt, &
2939	.FALSE., 'init_atmosphere_pt' )
2940	CALL get_attribute( id_dynamic, char_lod, init_3d%lod_pt, &
2941	.FALSE., 'init_atmosphere_pt' )
2942	!
2943	!-- level-of-detail 1 - read initialization profile
2944	IF ( init_3d%lod_pt == 1 ) THEN
2945	ALLOCATE( init_3d%pt_init(nzb:nzt+1) )
2946
2947	CALL get_variable( id_dynamic, 'init_atmosphere_pt', &
2948	init_3d%pt_init(nzb+1:nzt) )
2949	!
2950	!-- Set Neumann top and surface boundary condition for initial
2951	!-- profil
2952	init_3d%pt_init(nzb) = init_3d%pt_init(nzb+1)
2953	init_3d%pt_init(nzt+1) = init_3d%pt_init(nzt)
2954	!
2955	!-- level-of-detail 2 - read 3D initialization data
2956	ELSEIF ( init_3d%lod_pt == 2 ) THEN
2957
2958	CALL get_variable( id_dynamic, 'init_atmosphere_pt', &
2959	pt(nzb+1:nzt,nys:nyn,nxl:nxr), &
2960	nxl+1, nys+1, nzb+1, &
2961	nxr-nxl+1, nyn-nys+1, init_3d%nzu, &
2962	dynamic_3d )
2963
2964	!
2965	!-- Set bottom and top-boundary
2966	pt(nzb,:,:) = pt(nzb+1,:,:)
2967	pt(nzt+1,:,:) = pt(nzt,:,:)
2968
2969	ENDIF
2970	init_3d%from_file_pt = .TRUE.
2971	ELSE
2972	message_string = 'Missing initial data for ' // &
2973	'potential temperature'
2974	CALL message( 'netcdf_data_input_mod', 'PA0544', 1, 2, 0, 6, 0 )
2975	ENDIF
2976	ENDIF
2977	!
2978	!-- Read mixing ratio
2979	IF ( humidity ) THEN
2980	IF ( check_existence( var_names, 'init_atmosphere_qv' ) ) THEN
2981	!
2982	!-- Read attributes for the fill value and level-of-detail
2983	CALL get_attribute( id_dynamic, char_fill, init_3d%fill_q, &
2984	.FALSE., 'init_atmosphere_qv' )
2985	CALL get_attribute( id_dynamic, char_lod, init_3d%lod_q, &
2986	.FALSE., 'init_atmosphere_qv' )
2987	!
2988	!-- level-of-detail 1 - read initialization profile
2989	IF ( init_3d%lod_q == 1 ) THEN
2990	ALLOCATE( init_3d%q_init(nzb:nzt+1) )
2991
2992	CALL get_variable( id_dynamic, 'init_atmosphere_qv', &
2993	init_3d%q_init(nzb+1:nzt) )
2994	!
2995	!-- Set bottom and top boundary condition (Neumann)
2996	init_3d%q_init(nzb) = init_3d%q_init(nzb+1)
2997	init_3d%q_init(nzt+1) = init_3d%q_init(nzt)
2998	!
2999	!-- level-of-detail 2 - read 3D initialization data
3000	ELSEIF ( init_3d%lod_q == 2 ) THEN
3001
3002	CALL get_variable( id_dynamic, 'init_atmosphere_qv', &
3003	q(nzb+1:nzt,nys:nyn,nxl:nxr), &
3004	nxl+1, nys+1, nzb+1, &
3005	nxr-nxl+1, nyn-nys+1, init_3d%nzu, &
3006	dynamic_3d )
3007
3008	!
3009	!-- Set bottom and top-boundary
3010	q(nzb,:,:) = q(nzb+1,:,:)
3011	q(nzt+1,:,:) = q(nzt,:,:)
3012
3013	ENDIF
3014	init_3d%from_file_q = .TRUE.
3015	ELSE
3016	message_string = 'Missing initial data for ' // &
3017	'mixing ratio'
3018	CALL message( 'netcdf_data_input_mod', 'PA0544', 1, 2, 0, 6, 0 )
3019	ENDIF
3020	ENDIF
3021	!
3022	!-- Close input file
3023	CALL close_input_file( id_dynamic )
3024	#endif
3025	!
3026	!-- End of CPU measurement
3027	CALL cpu_log( log_point_s(85), 'NetCDF input init', 'stop' )
3028	!
3029	!-- Finally, check if the input data has any fill values. Please note,
3030	!-- checks depend on the LOD of the input data.
3031	IF ( init_3d%from_file_u ) THEN
3032	check_passed = .TRUE.
3033	IF ( init_3d%lod_u == 1 ) THEN
3034	IF ( ANY( init_3d%u_init(nzb+1:nzt+1) == init_3d%fill_u ) ) &
3035	check_passed = .FALSE.
3036	ELSEIF ( init_3d%lod_u == 2 ) THEN
3037	IF ( ANY( u(nzb+1:nzt+1,nys:nyn,nxlu:nxr) == init_3d%fill_u ) ) &
3038	check_passed = .FALSE.
3039	ENDIF
3040	IF ( .NOT. check_passed ) THEN
3041	message_string = 'NetCDF input for init_atmosphere_u must ' // &
3042	'not contain any _FillValues'
3043	CALL message( 'netcdf_data_input_mod', 'PA0545', 2, 2, 0, 6, 0 )
3044	ENDIF
3045	ENDIF
3046
3047	IF ( init_3d%from_file_v ) THEN
3048	check_passed = .TRUE.
3049	IF ( init_3d%lod_v == 1 ) THEN
3050	IF ( ANY( init_3d%v_init(nzb+1:nzt+1) == init_3d%fill_v ) ) &
3051	check_passed = .FALSE.
3052	ELSEIF ( init_3d%lod_v == 2 ) THEN
3053	IF ( ANY( v(nzb+1:nzt+1,nysv:nyn,nxl:nxr) == init_3d%fill_v ) ) &
3054	check_passed = .FALSE.
3055	ENDIF
3056	IF ( .NOT. check_passed ) THEN
3057	message_string = 'NetCDF input for init_atmosphere_v must ' // &
3058	'not contain any _FillValues'
3059	CALL message( 'netcdf_data_input_mod', 'PA0545', 2, 2, 0, 6, 0 )
3060	ENDIF
3061	ENDIF
3062
3063	IF ( init_3d%from_file_w ) THEN
3064	check_passed = .TRUE.
3065	IF ( init_3d%lod_w == 1 ) THEN
3066	IF ( ANY( init_3d%w_init(nzb+1:nzt) == init_3d%fill_w ) ) &
3067	check_passed = .FALSE.
3068	ELSEIF ( init_3d%lod_w == 2 ) THEN
3069	IF ( ANY( w(nzb+1:nzt,nys:nyn,nxl:nxr) == init_3d%fill_w ) ) &
3070	check_passed = .FALSE.
3071	ENDIF
3072	IF ( .NOT. check_passed ) THEN
3073	message_string = 'NetCDF input for init_atmosphere_w must ' // &
3074	'not contain any _FillValues'
3075	CALL message( 'netcdf_data_input_mod', 'PA0545', 2, 2, 0, 6, 0 )
3076	ENDIF
3077	ENDIF
3078
3079	IF ( init_3d%from_file_pt ) THEN
3080	check_passed = .TRUE.
3081	IF ( init_3d%lod_pt == 1 ) THEN
3082	IF ( ANY( init_3d%pt_init(nzb+1:nzt+1) == init_3d%fill_pt ) ) &
3083	check_passed = .FALSE.
3084	ELSEIF ( init_3d%lod_pt == 2 ) THEN
3085	IF ( ANY( pt(nzb+1:nzt+1,nys:nyn,nxl:nxr) == init_3d%fill_pt ) ) &
3086	check_passed = .FALSE.
3087	ENDIF
3088	IF ( .NOT. check_passed ) THEN
3089	message_string = 'NetCDF input for init_atmosphere_pt must ' // &
3090	'not contain any _FillValues'
3091	CALL message( 'netcdf_data_input_mod', 'PA0545', 2, 2, 0, 6, 0 )
3092	ENDIF
3093	ENDIF
3094
3095	IF ( init_3d%from_file_q ) THEN
3096	check_passed = .TRUE.
3097	IF ( init_3d%lod_q == 1 ) THEN
3098	IF ( ANY( init_3d%q_init(nzb+1:nzt+1) == init_3d%fill_q ) ) &
3099	check_passed = .FALSE.
3100	ELSEIF ( init_3d%lod_q == 2 ) THEN
3101	IF ( ANY( q(nzb+1:nzt+1,nys:nyn,nxl:nxr) == init_3d%fill_q ) ) &
3102	check_passed = .FALSE.
3103	ENDIF
3104	IF ( .NOT. check_passed ) THEN
3105	message_string = 'NetCDF input for init_atmosphere_q must ' // &
3106	'not contain any _FillValues'
3107	CALL message( 'netcdf_data_input_mod', 'PA0545', 2, 2, 0, 6, 0 )
3108	ENDIF
3109	ENDIF
3110	!
3111	!-- Workaround for cyclic conditions. Please see above for further explanation.
3112	IF ( bc_lr_cyc .AND. nxl == 0 ) nxlu = nxl
3113	IF ( bc_ns_cyc .AND. nys == 0 ) nysv = nys
3114
3115	END SUBROUTINE netcdf_data_input_init_3d
3116
3117	!------------------------------------------------------------------------------!
3118	! Description:
3119	! ------------
3120	!> Reads initialization data of u, v, w, pt, q, geostrophic wind components,
3121	!> as well as soil moisture and soil temperature, derived from larger-scale
3122	!> model (COSMO) by Inifor.
3123	!------------------------------------------------------------------------------!
3124	SUBROUTINE netcdf_data_input_init_lsm
3125
3126	USE control_parameters, &
3127	ONLY: message_string
3128
3129	USE indices, &
3130	ONLY: nx, nxl, nxr, ny, nyn, nys
3131
3132	IMPLICIT NONE
3133
3134	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names
3135
3136	INTEGER(iwp) :: id_dynamic !< NetCDF id of dynamic input file
3137	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
3138
3139	!
3140	!-- Skip routine if no input file with dynamic input data is available.
3141	IF ( .NOT. input_pids_dynamic ) RETURN
3142	!
3143	!-- CPU measurement
3144	CALL cpu_log( log_point_s(85), 'NetCDF input init', 'start' )
3145
3146	#if defined ( __netcdf )
3147	!
3148	!-- Open file in read-only mode
3149	CALL open_read_file( TRIM( input_file_dynamic ) // &
3150	TRIM( coupling_char ), id_dynamic )
3151
3152	!
3153	!-- At first, inquire all variable names.
3154	CALL inquire_num_variables( id_dynamic, num_vars )
3155	!
3156	!-- Allocate memory to store variable names.
3157	ALLOCATE( var_names(1:num_vars) )
3158	CALL inquire_variable_names( id_dynamic, var_names )
3159	!
3160	!-- Read vertical dimension for soil depth.
3161	IF ( check_existence( var_names, 'zsoil' ) ) &
3162	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nzs,&
3163	'zsoil' )
3164	!
3165	!-- Read also the horizontal dimensions required for soil initialization.
3166	!-- Please note, in case of non-nested runs or in case of root domain,
3167	!-- these data is already available, but will be read again for the sake
3168	!-- of clearness.
3169	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nx, &
3170	'x' )
3171	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%ny, &
3172	'y' )
3173	!
3174	!-- Check for correct horizontal and vertical dimension. Please note,
3175	!-- in case of non-nested runs or in case of root domain, these checks
3176	!-- are already performed
3177	IF ( init_3d%nx-1 /= nx .OR. init_3d%ny-1 /= ny ) THEN
3178	message_string = 'Number of inifor horizontal grid points '// &
3179	'does not match the number of numeric grid points.'
3180	CALL message( 'netcdf_data_input_mod', 'PA0543', 1, 2, 0, 6, 0 )
3181	ENDIF
3182	!
3183	!-- Read vertical dimensions. Later, these are required for eventual
3184	!-- inter- and extrapolations of the initialization data.
3185	IF ( check_existence( var_names, 'zsoil' ) ) THEN
3186	ALLOCATE( init_3d%z_soil(1:init_3d%nzs) )
3187	CALL get_variable( id_dynamic, 'zsoil', init_3d%z_soil )
3188	ENDIF
3189	!
3190	!-- Read initial data for soil moisture
3191	IF ( check_existence( var_names, 'init_soil_m' ) ) THEN
3192	!
3193	!-- Read attributes for the fill value and level-of-detail
3194	CALL get_attribute( id_dynamic, char_fill, &
3195	init_3d%fill_msoil, &
3196	.FALSE., 'init_soil_m' )
3197	CALL get_attribute( id_dynamic, char_lod, &
3198	init_3d%lod_msoil, &
3199	.FALSE., 'init_soil_m' )
3200	!
3201	!-- level-of-detail 1 - read initialization profile
3202	IF ( init_3d%lod_msoil == 1 ) THEN
3203	ALLOCATE( init_3d%msoil_1d(0:init_3d%nzs-1) )
3204
3205	CALL get_variable( id_dynamic, 'init_soil_m', &
3206	init_3d%msoil_1d(0:init_3d%nzs-1) )
3207	!
3208	!-- level-of-detail 2 - read 3D initialization data
3209	ELSEIF ( init_3d%lod_msoil == 2 ) THEN
3210	ALLOCATE ( init_3d%msoil_3d(0:init_3d%nzs-1,nys:nyn,nxl:nxr) )
3211
3212	CALL get_variable( id_dynamic, 'init_soil_m', &
3213	init_3d%msoil_3d(0:init_3d%nzs-1,nys:nyn,nxl:nxr),&
3214	nxl, nxr, nys, nyn, 0, init_3d%nzs-1 )
3215
3216	ENDIF
3217	init_3d%from_file_msoil = .TRUE.
3218	ENDIF
3219	!
3220	!-- Read soil temperature
3221	IF ( check_existence( var_names, 'init_soil_t' ) ) THEN
3222	!
3223	!-- Read attributes for the fill value and level-of-detail
3224	CALL get_attribute( id_dynamic, char_fill, &
3225	init_3d%fill_tsoil, &
3226	.FALSE., 'init_soil_t' )
3227	CALL get_attribute( id_dynamic, char_lod, &
3228	init_3d%lod_tsoil, &
3229	.FALSE., 'init_soil_t' )
3230	!
3231	!-- level-of-detail 1 - read initialization profile
3232	IF ( init_3d%lod_tsoil == 1 ) THEN
3233	ALLOCATE( init_3d%tsoil_1d(0:init_3d%nzs-1) )
3234
3235	CALL get_variable( id_dynamic, 'init_soil_t', &
3236	init_3d%tsoil_1d(0:init_3d%nzs-1) )
3237
3238	!
3239	!-- level-of-detail 2 - read 3D initialization data
3240	ELSEIF ( init_3d%lod_tsoil == 2 ) THEN
3241	ALLOCATE ( init_3d%tsoil_3d(0:init_3d%nzs-1,nys:nyn,nxl:nxr) )
3242
3243	CALL get_variable( id_dynamic, 'init_soil_t', &
3244	init_3d%tsoil_3d(0:init_3d%nzs-1,nys:nyn,nxl:nxr),&
3245	nxl, nxr, nys, nyn, 0, init_3d%nzs-1 )
3246	ENDIF
3247	init_3d%from_file_tsoil = .TRUE.
3248	ENDIF
3249	!
3250	!-- Close input file
3251	CALL close_input_file( id_dynamic )
3252	#endif
3253	!
3254	!-- End of CPU measurement
3255	CALL cpu_log( log_point_s(85), 'NetCDF input init', 'stop' )
3256
3257	END SUBROUTINE netcdf_data_input_init_lsm
3258
3259	!------------------------------------------------------------------------------!
3260	! Description:
3261	! ------------
3262	!> Reads data at lateral and top boundaries derived from larger-scale model
3263	!> (COSMO) by Inifor.
3264	!------------------------------------------------------------------------------!
3265	SUBROUTINE netcdf_data_input_offline_nesting
3266
3267	USE control_parameters, &
3268	ONLY: bc_dirichlet_l, bc_dirichlet_n, bc_dirichlet_r, &
3269	bc_dirichlet_s, humidity, neutral, nesting_offline, &
3270	time_since_reference_point
3271
3272	USE indices, &
3273	ONLY: nxl, nxlu, nxr, nyn, nys, nysv, nzb, nzt
3274
3275	IMPLICIT NONE
3276
3277	INTEGER(iwp) :: id_dynamic !< NetCDF id of dynamic input file
3278	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
3279	INTEGER(iwp) :: t !< running index time dimension
3280
3281	nest_offl%from_file = MERGE( .TRUE., .FALSE., input_pids_dynamic )
3282	!
3283	!-- Skip input if no forcing from larger-scale models is applied.
3284	IF ( .NOT. nesting_offline ) RETURN
3285
3286	!
3287	!-- CPU measurement
3288	CALL cpu_log( log_point_s(86), 'NetCDF input forcing', 'start' )
3289
3290	#if defined ( __netcdf )
3291	!
3292	!-- Open file in read-only mode
3293	CALL open_read_file( TRIM( input_file_dynamic ) // &
3294	TRIM( coupling_char ), id_dynamic )
3295	!
3296	!-- Initialize INIFOR forcing.
3297	IF ( .NOT. nest_offl%init ) THEN
3298	!
3299	!-- At first, inquire all variable names.
3300	CALL inquire_num_variables( id_dynamic, num_vars )
3301	!
3302	!-- Allocate memory to store variable names.
3303	ALLOCATE( nest_offl%var_names(1:num_vars) )
3304	CALL inquire_variable_names( id_dynamic, nest_offl%var_names )
3305	!
3306	!-- Read time dimension, allocate memory and finally read time array
3307	CALL netcdf_data_input_get_dimension_length( id_dynamic, &
3308	nest_offl%nt, 'time' )
3309
3310	IF ( check_existence( nest_offl%var_names, 'time' ) ) THEN
3311	ALLOCATE( nest_offl%time(0:nest_offl%nt-1) )
3312	CALL get_variable( id_dynamic, 'time', nest_offl%time )
3313	ENDIF
3314	!
3315	!-- Read vertical dimension of scalar und w grid
3316	CALL netcdf_data_input_get_dimension_length( id_dynamic, &
3317	nest_offl%nzu, 'z' )
3318	CALL netcdf_data_input_get_dimension_length( id_dynamic, &
3319	nest_offl%nzw, 'zw' )
3320
3321	IF ( check_existence( nest_offl%var_names, 'z' ) ) THEN
3322	ALLOCATE( nest_offl%zu_atmos(1:nest_offl%nzu) )
3323	CALL get_variable( id_dynamic, 'z', nest_offl%zu_atmos )
3324	ENDIF
3325	IF ( check_existence( nest_offl%var_names, 'zw' ) ) THEN
3326	ALLOCATE( nest_offl%zw_atmos(1:nest_offl%nzw) )
3327	CALL get_variable( id_dynamic, 'zw', nest_offl%zw_atmos )
3328	ENDIF
3329
3330	!
3331	!-- Read surface pressure
3332	IF ( check_existence( nest_offl%var_names, &
3333	'surface_forcing_surface_pressure' ) ) THEN
3334	ALLOCATE( nest_offl%surface_pressure(0:nest_offl%nt-1) )
3335	CALL get_variable( id_dynamic, &
3336	'surface_forcing_surface_pressure', &
3337	nest_offl%surface_pressure )
3338	ENDIF
3339	!
3340	!-- Set control flag to indicate that initialization is already done
3341	nest_offl%init = .TRUE.
3342
3343	ENDIF
3344
3345	!
3346	!-- Obtain time index for current input starting at 0.
3347	!-- @todo: At the moment INIFOR and simulated time correspond
3348	!-- to each other. If required, adjust to daytime.
3349	nest_offl%tind = MINLOC( ABS( nest_offl%time - &
3350	time_since_reference_point ), DIM = 1 ) &
3351	- 1
3352	nest_offl%tind_p = nest_offl%tind + 1
3353	!
3354	!-- Read geostrophic wind components
3355	DO t = nest_offl%tind, nest_offl%tind_p
3356	CALL get_variable_pr( id_dynamic, 'ls_forcing_ug', t+1, &
3357	nest_offl%ug(t-nest_offl%tind,nzb+1:nzt) )
3358	CALL get_variable_pr( id_dynamic, 'ls_forcing_vg', t+1, &
3359	nest_offl%vg(t-nest_offl%tind,nzb+1:nzt) )
3360	ENDDO
3361	!
3362	!-- Read data at lateral and top boundaries. Please note, at left and
3363	!-- right domain boundary, yz-layers are read for u, v, w, pt and q.
3364	!-- For the v-component, the data starts at nysv, while for the other
3365	!-- quantities the data starts at nys. This is equivalent at the north
3366	!-- and south domain boundary for the u-component.
3367	!-- Further, lateral data is not accessed by parallel IO, indicated by the
3368	!-- last passed flag in the subroutine get_variable(). This is because
3369	!-- not every PE participates in this collective blocking read operation.
3370	IF ( bc_dirichlet_l ) THEN
3371	CALL get_variable( id_dynamic, 'ls_forcing_left_u', &
3372	nest_offl%u_left(0:1,nzb+1:nzt,nys:nyn), &
3373	nys+1, nzb+1, nest_offl%tind+1, &
3374	nyn-nys+1, nest_offl%nzu, 2, .FALSE. )
3375
3376	CALL get_variable( id_dynamic, 'ls_forcing_left_v', &
3377	nest_offl%v_left(0:1,nzb+1:nzt,nysv:nyn), &
3378	nysv, nzb+1, nest_offl%tind+1, &
3379	nyn-nysv+1, nest_offl%nzu, 2, .FALSE. )
3380
3381	CALL get_variable( id_dynamic, 'ls_forcing_left_w', &
3382	nest_offl%w_left(0:1,nzb+1:nzt-1,nys:nyn), &
3383	nys+1, nzb+1, nest_offl%tind+1, &
3384	nyn-nys+1, nest_offl%nzw, 2, .FALSE. )
3385
3386	IF ( .NOT. neutral ) THEN
3387	CALL get_variable( id_dynamic, 'ls_forcing_left_pt', &
3388	nest_offl%pt_left(0:1,nzb+1:nzt,nys:nyn), &
3389	nys+1, nzb+1, nest_offl%tind+1, &
3390	nyn-nys+1, nest_offl%nzu, 2, .FALSE. )
3391	ENDIF
3392
3393	IF ( humidity ) THEN
3394	CALL get_variable( id_dynamic, 'ls_forcing_left_qv', &
3395	nest_offl%q_left(0:1,nzb+1:nzt,nys:nyn), &
3396	nys+1, nzb+1, nest_offl%tind+1, &
3397	nyn-nys+1, nest_offl%nzu, 2, .FALSE. )
3398	ENDIF
3399
3400	ENDIF
3401
3402	IF ( bc_dirichlet_r ) THEN
3403	CALL get_variable( id_dynamic, 'ls_forcing_right_u', &
3404	nest_offl%u_right(0:1,nzb+1:nzt,nys:nyn), &
3405	nys+1, nzb+1, nest_offl%tind+1, &
3406	nyn-nys+1, nest_offl%nzu, 2, .FALSE. )
3407
3408	CALL get_variable( id_dynamic, 'ls_forcing_right_v', &
3409	nest_offl%v_right(0:1,nzb+1:nzt,nysv:nyn), &
3410	nysv, nzb+1, nest_offl%tind+1, &
3411	nyn-nysv+1, nest_offl%nzu, 2, .FALSE. )
3412
3413	CALL get_variable( id_dynamic, 'ls_forcing_right_w', &
3414	nest_offl%w_right(0:1,nzb+1:nzt-1,nys:nyn), &
3415	nys+1, nzb+1, nest_offl%tind+1, &
3416	nyn-nys+1, nest_offl%nzw, 2, .FALSE. )
3417
3418	IF ( .NOT. neutral ) THEN
3419	CALL get_variable( id_dynamic, 'ls_forcing_right_pt', &
3420	nest_offl%pt_right(0:1,nzb+1:nzt,nys:nyn), &
3421	nys+1, nzb+1, nest_offl%tind+1, &
3422	nyn-nys+1, nest_offl%nzu, 2, .FALSE. )
3423	ENDIF
3424	IF ( humidity ) THEN
3425	CALL get_variable( id_dynamic, 'ls_forcing_right_qv', &
3426	nest_offl%q_right(0:1,nzb+1:nzt,nys:nyn), &
3427	nys+1, nzb+1, nest_offl%tind+1, &
3428	nyn-nys+1, nest_offl%nzu, 2, .FALSE. )
3429	ENDIF
3430	ENDIF
3431
3432	IF ( bc_dirichlet_n ) THEN
3433
3434	CALL get_variable( id_dynamic, 'ls_forcing_north_u', &
3435	nest_offl%u_north(0:1,nzb+1:nzt,nxlu:nxr), &
3436	nxlu, nzb+1, nest_offl%tind+1, &
3437	nxr-nxlu+1, nest_offl%nzu, 2, .FALSE. )
3438
3439	CALL get_variable( id_dynamic, 'ls_forcing_north_v', &
3440	nest_offl%v_north(0:1,nzb+1:nzt,nxl:nxr), &
3441	nxl+1, nzb+1, nest_offl%tind+1, &
3442	nxr-nxl+1, nest_offl%nzu, 2, .FALSE. )
3443
3444	CALL get_variable( id_dynamic, 'ls_forcing_north_w', &
3445	nest_offl%w_north(0:1,nzb+1:nzt-1,nxl:nxr), &
3446	nxl+1, nzb+1, nest_offl%tind+1, &
3447	nxr-nxl+1, nest_offl%nzw, 2, .FALSE. )
3448
3449	IF ( .NOT. neutral ) THEN
3450	CALL get_variable( id_dynamic, 'ls_forcing_north_pt', &
3451	nest_offl%pt_north(0:1,nzb+1:nzt,nxl:nxr), &
3452	nxl+1, nzb+1, nest_offl%tind+1, &
3453	nxr-nxl+1, nest_offl%nzu, 2, .FALSE. )
3454	ENDIF
3455	IF ( humidity ) THEN
3456	CALL get_variable( id_dynamic, 'ls_forcing_north_qv', &
3457	nest_offl%q_north(0:1,nzb+1:nzt,nxl:nxr), &
3458	nxl+1, nzb+1, nest_offl%tind+1, &
3459	nxr-nxl+1, nest_offl%nzu, 2, .FALSE. )
3460	ENDIF
3461	ENDIF
3462
3463	IF ( bc_dirichlet_s ) THEN
3464	CALL get_variable( id_dynamic, 'ls_forcing_south_u', &
3465	nest_offl%u_south(0:1,nzb+1:nzt,nxlu:nxr), &
3466	nxlu, nzb+1, nest_offl%tind+1, &
3467	nxr-nxlu+1, nest_offl%nzu, 2, .FALSE. )
3468
3469	CALL get_variable( id_dynamic, 'ls_forcing_south_v', &
3470	nest_offl%v_south(0:1,nzb+1:nzt,nxl:nxr), &
3471	nxl+1, nzb+1, nest_offl%tind+1, &
3472	nxr-nxl+1, nest_offl%nzu, 2, .FALSE. )
3473
3474	CALL get_variable( id_dynamic, 'ls_forcing_south_w', &
3475	nest_offl%w_south(0:1,nzb+1:nzt-1,nxl:nxr), &
3476	nxl+1, nzb+1, nest_offl%tind+1, &
3477	nxr-nxl+1, nest_offl%nzw, 2, .FALSE. )
3478
3479	IF ( .NOT. neutral ) THEN
3480	CALL get_variable( id_dynamic, 'ls_forcing_south_pt', &
3481	nest_offl%pt_south(0:1,nzb+1:nzt,nxl:nxr), &
3482	nxl+1, nzb+1, nest_offl%tind+1, &
3483	nxr-nxl+1, nest_offl%nzu, 2, .FALSE. )
3484	ENDIF
3485	IF ( humidity ) THEN
3486	CALL get_variable( id_dynamic, 'ls_forcing_south_qv', &
3487	nest_offl%q_south(0:1,nzb+1:nzt,nxl:nxr), &
3488	nxl+1, nzb+1, nest_offl%tind+1, &
3489	nxr-nxl+1, nest_offl%nzu, 2, .FALSE. )
3490	ENDIF
3491	ENDIF
3492
3493	!
3494	!-- Top boundary
3495	CALL get_variable( id_dynamic, 'ls_forcing_top_u', &
3496	nest_offl%u_top(0:1,nys:nyn,nxlu:nxr), &
3497	nxlu, nys+1, nest_offl%tind+1, &
3498	nxr-nxlu+1, nyn-nys+1, 2, .TRUE. )
3499
3500	CALL get_variable( id_dynamic, 'ls_forcing_top_v', &
3501	nest_offl%v_top(0:1,nysv:nyn,nxl:nxr), &
3502	nxl+1, nysv, nest_offl%tind+1, &
3503	nxr-nxl+1, nyn-nysv+1, 2, .TRUE. )
3504
3505	CALL get_variable( id_dynamic, 'ls_forcing_top_w', &
3506	nest_offl%w_top(0:1,nys:nyn,nxl:nxr), &
3507	nxl+1, nys+1, nest_offl%tind+1, &
3508	nxr-nxl+1, nyn-nys+1, 2, .TRUE. )
3509
3510	IF ( .NOT. neutral ) THEN
3511	CALL get_variable( id_dynamic, 'ls_forcing_top_pt', &
3512	nest_offl%pt_top(0:1,nys:nyn,nxl:nxr), &
3513	nxl+1, nys+1, nest_offl%tind+1, &
3514	nxr-nxl+1, nyn-nys+1, 2, .TRUE. )
3515	ENDIF
3516	IF ( humidity ) THEN
3517	CALL get_variable( id_dynamic, 'ls_forcing_top_qv', &
3518	nest_offl%q_top(0:1,nys:nyn,nxl:nxr), &
3519	nxl+1, nys+1, nest_offl%tind+1, &
3520	nxr-nxl+1, nyn-nys+1, 2, .TRUE. )
3521	ENDIF
3522
3523	!
3524	!-- Close input file
3525	CALL close_input_file( id_dynamic )
3526	#endif
3527	!
3528	!-- End of CPU measurement
3529	CALL cpu_log( log_point_s(86), 'NetCDF input forcing', 'stop' )
3530
3531	END SUBROUTINE netcdf_data_input_offline_nesting
3532
3533
3534	!------------------------------------------------------------------------------!
3535	! Description:
3536	! ------------
3537	!> Checks input file for consistency and minimum requirements.
3538	!------------------------------------------------------------------------------!
3539	SUBROUTINE netcdf_data_input_check_dynamic
3540
3541	USE control_parameters, &
3542	ONLY: initializing_actions, message_string, nesting_offline
3543
3544	IMPLICIT NONE
3545
3546	!
3547	!-- In case of forcing, check whether dynamic input file is present
3548	IF ( .NOT. input_pids_dynamic .AND. nesting_offline ) THEN
3549	message_string = 'nesting_offline = .TRUE. requires dynamic ' // &
3550	'input file ' // &
3551	TRIM( input_file_dynamic ) // TRIM( coupling_char )
3552	CALL message( 'netcdf_data_input_mod', 'PA0546', 1, 2, 0, 6, 0 )
3553	ENDIF
3554	!
3555	!-- Dynamic input file must also be present if initialization via inifor is
3556	!-- prescribed.
3557	IF ( .NOT. input_pids_dynamic .AND. &
3558	TRIM( initializing_actions ) == 'inifor' ) THEN
3559	message_string = 'initializing_actions = inifor requires dynamic ' //&
3560	'input file ' // TRIM( input_file_dynamic ) // &
3561	TRIM( coupling_char )
3562	CALL message( 'netcdf_data_input_mod', 'PA0547', 1, 2, 0, 6, 0 )
3563	ENDIF
3564
3565	END SUBROUTINE netcdf_data_input_check_dynamic
3566
3567	!------------------------------------------------------------------------------!
3568	! Description:
3569	! ------------
3570	!> Checks input file for consistency and minimum requirements.
3571	!------------------------------------------------------------------------------!
3572	SUBROUTINE netcdf_data_input_check_static
3573
3574	USE arrays_3d, &
3575	ONLY: zu
3576
3577	USE control_parameters, &
3578	ONLY: land_surface, message_string, urban_surface
3579
3580	USE grid_variables, &
3581	ONLY: dx, dy
3582
3583	USE indices, &
3584	ONLY: nx, nxl, nxr, ny, nyn, nys
3585
3586	IMPLICIT NONE
3587
3588	INTEGER(iwp) :: i !< loop index along x-direction
3589	INTEGER(iwp) :: j !< loop index along y-direction
3590	INTEGER(iwp) :: n_surf !< number of different surface types at given location
3591
3592	LOGICAL :: check_passed !< flag indicating if a check passed
3593
3594	!
3595	!-- Return if no static input file is available
3596	IF ( .NOT. input_pids_static ) RETURN
3597	!
3598	!-- Check whether dimension size in input file matches the model dimensions
3599	IF ( dim_static%nx-1 /= nx .OR. dim_static%ny-1 /= ny ) THEN
3600	message_string = 'Static input file: horizontal dimension in ' // &
3601	'x- and/or y-direction ' // &
3602	'do not match the respective model dimension'
3603	CALL message( 'netcdf_data_input_mod', 'PA0548', 1, 2, 0, 6, 0 )
3604	ENDIF
3605	!
3606	!-- Check if grid spacing of provided input data matches the respective
3607	!-- grid spacing in the model.
3608	IF ( ABS( dim_static%x(1) - dim_static%x(0) - dx ) > 10E-6_wp .OR. &
3609	ABS( dim_static%y(1) - dim_static%y(0) - dy ) > 10E-6_wp ) THEN
3610	message_string = 'Static input file: horizontal grid spacing ' // &
3611	'in x- and/or y-direction ' // &
3612	'do not match the respective model grid spacing.'
3613	CALL message( 'netcdf_data_input_mod', 'PA0549', 1, 2, 0, 6, 0 )
3614	ENDIF
3615	!
3616	!-- Check for correct dimension of surface_fractions, should run from 0-2.
3617	IF ( surface_fraction_f%from_file ) THEN
3618	IF ( surface_fraction_f%nf-1 > 2 ) THEN
3619	message_string = 'nsurface_fraction must not be larger than 3.'
3620	CALL message( 'netcdf_data_input_mod', 'PA0580', 1, 2, 0, 6, 0 )
3621	ENDIF
3622	ENDIF
3623	!
3624	!-- Check orography for fill-values. For the moment, give an error message.
3625	!-- More advanced methods, e.g. a nearest neighbor algorithm as used in GIS
3626	!-- systems might be implemented later.
3627	!-- Please note, if no terrain height is provided, it is set to 0.
3628	IF ( ANY( terrain_height_f%var == terrain_height_f%fill ) ) THEN
3629	message_string = 'NetCDF variable zt is not ' // &
3630	'allowed to have missing data'
3631	CALL message( 'netcdf_data_input_mod', 'PA0550', 2, 2, myid, 6, 0 )
3632	ENDIF
3633	!
3634	!-- Check for negative terrain heights
3635	IF ( ANY( terrain_height_f%var < 0.0_wp ) ) THEN
3636	message_string = 'NetCDF variable zt is not ' // &
3637	'allowed to have negative values'
3638	CALL message( 'netcdf_data_input_mod', 'PA0551', 2, 2, myid, 6, 0 )
3639	ENDIF
3640	!
3641	!-- If 3D buildings are read, check if building information is consistent
3642	!-- to numeric grid.
3643	IF ( buildings_f%from_file ) THEN
3644	IF ( buildings_f%lod == 2 ) THEN
3645	IF ( buildings_f%nz > SIZE( zu ) ) THEN
3646	message_string = 'Reading 3D building data - too much ' // &
3647	'data points along the vertical coordinate.'
3648	CALL message( 'netcdf_data_input_mod', 'PA0552', 2, 2, 0, 6, 0 )
3649	ENDIF
3650
3651	IF ( ANY( ABS( buildings_f%z(0:buildings_f%nz-1) - &
3652	zu(0:buildings_f%nz-1) ) > 1E-6_wp ) ) THEN
3653	message_string = 'Reading 3D building data - vertical ' // &
3654	'coordinate do not match numeric grid.'
3655	CALL message( 'netcdf_data_input_mod', 'PA0553', 2, 2, myid, 6, 0 )
3656	ENDIF
3657	ENDIF
3658	ENDIF
3659
3660	!
3661	!-- Skip further checks concerning buildings and natural surface properties
3662	!-- if no urban surface and land surface model are applied.
3663	IF ( .NOT. land_surface .AND. .NOT. urban_surface ) RETURN
3664	!
3665	!-- Check for minimum requirement of surface-classification data in case
3666	!-- static input file is used.
3667	IF ( ( .NOT. vegetation_type_f%from_file .OR. &
3668	.NOT. pavement_type_f%from_file .OR. &
3669	.NOT. water_type_f%from_file .OR. &
3670	.NOT. soil_type_f%from_file ) .OR. &
3671	( urban_surface .AND. .NOT. building_type_f%from_file ) ) THEN
3672	message_string = 'Minimum requirement for surface classification ' //&
3673	'is not fulfilled. At least ' // &
3674	'vegetation_type, pavement_type, ' // &
3675	'soil_type and water_type are '// &
3676	'required. If urban-surface model is applied, ' // &
3677	'also building_type ist required'
3678	CALL message( 'netcdf_data_input_mod', 'PA0554', 1, 2, 0, 6, 0 )
3679	ENDIF
3680	!
3681	!-- Check for general availability of input variables.
3682	!-- If vegetation_type is 0 at any location, vegetation_pars as well as
3683	!-- root_area_dens_s are required.
3684	IF ( vegetation_type_f%from_file ) THEN
3685	IF ( ANY( vegetation_type_f%var == 0 ) ) THEN
3686	IF ( .NOT. vegetation_pars_f%from_file ) THEN
3687	message_string = 'If vegetation_type = 0 at any location, ' // &
3688	'vegetation_pars is required'
3689	CALL message( 'netcdf_data_input_mod', 'PA0555', 2, 2, -1, 6, 0 )
3690	ENDIF
3691	IF ( .NOT. root_area_density_lsm_f%from_file ) THEN
3692	message_string = 'If vegetation_type = 0 at any location, ' // &
3693	'root_area_dens_s is required'
3694	CALL message( 'netcdf_data_input_mod', 'PA0556', 2, 2, myid, 6, 0 )
3695	ENDIF
3696	ENDIF
3697	ENDIF
3698	!
3699	!-- If soil_type is zero at any location, soil_pars is required.
3700	IF ( soil_type_f%from_file ) THEN
3701	check_passed = .TRUE.
3702	IF ( ALLOCATED( soil_type_f%var_2d ) ) THEN
3703	IF ( ANY( soil_type_f%var_2d == 0 ) ) THEN
3704	IF ( .NOT. soil_pars_f%from_file ) check_passed = .FALSE.
3705	ENDIF
3706	ELSE
3707	IF ( ANY( soil_type_f%var_3d == 0 ) ) THEN
3708	IF ( .NOT. soil_pars_f%from_file ) check_passed = .FALSE.
3709	ENDIF
3710	ENDIF
3711	IF ( .NOT. check_passed ) THEN
3712	message_string = 'If soil_type = 0 at any location, ' // &
3713	'soil_pars is required'
3714	CALL message( 'netcdf_data_input_mod', 'PA0557', 2, 2, myid, 6, 0 )
3715	ENDIF
3716	ENDIF
3717	!
3718	!-- Buildings require a type in case of urban-surface model.
3719	IF ( buildings_f%from_file .AND. .NOT. building_type_f%from_file ) THEN
3720	message_string = 'If buildings are provided, also building_type ' // &
3721	'is required'
3722	CALL message( 'netcdf_data_input_mod', 'PA0581', 2, 2, myid, 6, 0 )
3723	ENDIF
3724	!
3725	!-- Buildings require an ID.
3726	IF ( buildings_f%from_file .AND. .NOT. building_id_f%from_file ) THEN
3727	message_string = 'If buildings are provided, also building_id ' // &
3728	'is required'
3729	CALL message( 'netcdf_data_input_mod', 'PA0582', 2, 2, myid, 6, 0 )
3730	ENDIF
3731	!
3732	!-- If building_type is zero at any location, building_pars is required.
3733	IF ( building_type_f%from_file ) THEN
3734	IF ( ANY( building_type_f%var == 0 ) ) THEN
3735	IF ( .NOT. building_pars_f%from_file ) THEN
3736	message_string = 'If building_type = 0 at any location, ' // &
3737	'building_pars is required'
3738	CALL message( 'netcdf_data_input_mod', 'PA0558', 2, 2, myid, 6, 0 )
3739	ENDIF
3740	ENDIF
3741	ENDIF
3742	!
3743	!-- If building_type is provided, also building_id is needed (due to the
3744	!-- filtering algorithm).
3745	IF ( building_type_f%from_file .AND. .NOT. building_id_f%from_file ) &
3746	THEN
3747	message_string = 'If building_type is provided, also building_id '// &
3748	'is required'
3749	CALL message( 'netcdf_data_input_mod', 'PA0519', 2, 2, myid, 6, 0 )
3750	ENDIF
3751	!
3752	!-- If albedo_type is zero at any location, albedo_pars is required.
3753	IF ( albedo_type_f%from_file ) THEN
3754	IF ( ANY( albedo_type_f%var == 0 ) ) THEN
3755	IF ( .NOT. albedo_pars_f%from_file ) THEN
3756	message_string = 'If albedo_type = 0 at any location, ' // &
3757	'albedo_pars is required'
3758	CALL message( 'netcdf_data_input_mod', 'PA0559', 2, 2, myid, 6, 0 )
3759	ENDIF
3760	ENDIF
3761	ENDIF
3762	!
3763	!-- If pavement_type is zero at any location, pavement_pars is required.
3764	IF ( pavement_type_f%from_file ) THEN
3765	IF ( ANY( pavement_type_f%var == 0 ) ) THEN
3766	IF ( .NOT. pavement_pars_f%from_file ) THEN
3767	message_string = 'If pavement_type = 0 at any location, ' // &
3768	'pavement_pars is required'
3769	CALL message( 'netcdf_data_input_mod', 'PA0560', 2, 2, myid, 6, 0 )
3770	ENDIF
3771	ENDIF
3772	ENDIF
3773	!
3774	!-- If pavement_type is zero at any location, also pavement_subsurface_pars
3775	!-- is required.
3776	IF ( pavement_type_f%from_file ) THEN
3777	IF ( ANY( pavement_type_f%var == 0 ) ) THEN
3778	IF ( .NOT. pavement_subsurface_pars_f%from_file ) THEN
3779	message_string = 'If pavement_type = 0 at any location, ' // &
3780	'pavement_subsurface_pars is required'
3781	CALL message( 'netcdf_data_input_mod', 'PA0561', 2, 2, myid, 6, 0 )
3782	ENDIF
3783	ENDIF
3784	ENDIF
3785	!
3786	!-- If water_type is zero at any location, water_pars is required.
3787	IF ( water_type_f%from_file ) THEN
3788	IF ( ANY( water_type_f%var == 0 ) ) THEN
3789	IF ( .NOT. water_pars_f%from_file ) THEN
3790	message_string = 'If water_type = 0 at any location, ' // &
3791	'water_pars is required'
3792	CALL message( 'netcdf_data_input_mod', 'PA0562', 2, 2,myid, 6, 0 )
3793	ENDIF
3794	ENDIF
3795	ENDIF
3796	!
3797	!-- Check for local consistency of the input data.
3798	DO i = nxl, nxr
3799	DO j = nys, nyn
3800	!
3801	!-- For each (y,x)-location at least one of the parameters
3802	!-- vegetation_type, pavement_type, building_type, or water_type
3803	!-- must be set to a nonÂmissing value.
3804	IF ( vegetation_type_f%var(j,i) == vegetation_type_f%fill .AND. &
3805	pavement_type_f%var(j,i) == pavement_type_f%fill .AND. &
3806	building_type_f%var(j,i) == building_type_f%fill .AND. &
3807	water_type_f%var(j,i) == water_type_f%fill ) THEN
3808	WRITE( message_string, * ) 'At least one of the parameters '// &
3809	'vegetation_type, pavement_type, ' // &
3810	'building_type, or water_type must be set '// &
3811	'to a non-missing value. Grid point: ', j, i
3812	CALL message( 'netcdf_data_input_mod', 'PA0563', 2, 2, myid, 6, 0 )
3813	ENDIF
3814	!
3815	!-- Note that a soil_type is required for each location (y,x) where
3816	!-- either vegetation_type or pavement_type is a nonÂmissing value.
3817	IF ( ( vegetation_type_f%var(j,i) /= vegetation_type_f%fill .OR. &
3818	pavement_type_f%var(j,i) /= pavement_type_f%fill ) ) THEN
3819	check_passed = .TRUE.
3820	IF ( ALLOCATED( soil_type_f%var_2d ) ) THEN
3821	IF ( soil_type_f%var_2d(j,i) == soil_type_f%fill ) &
3822	check_passed = .FALSE.
3823	ELSE
3824	IF ( ANY( soil_type_f%var_3d(:,j,i) == soil_type_f%fill) ) &
3825	check_passed = .FALSE.
3826	ENDIF
3827
3828	IF ( .NOT. check_passed ) THEN
3829	message_string = 'soil_type is required for each '// &
3830	'location (y,x) where vegetation_type or ' // &
3831	'pavement_type is a non-missing value.'
3832	CALL message( 'netcdf_data_input_mod', 'PA0564', &
3833	2, 2, myid, 6, 0 )
3834	ENDIF
3835	ENDIF
3836	!
3837	!-- Check for consistency of surface fraction. If more than one type
3838	!-- is set, surface fraction need to be given and the sum must not
3839	!-- be larger than 1.
3840	n_surf = 0
3841	IF ( vegetation_type_f%var(j,i) /= vegetation_type_f%fill ) &
3842	n_surf = n_surf + 1
3843	IF ( water_type_f%var(j,i) /= water_type_f%fill ) &
3844	n_surf = n_surf + 1
3845	IF ( pavement_type_f%var(j,i) /= pavement_type_f%fill ) &
3846	n_surf = n_surf + 1
3847
3848	IF ( n_surf > 1 ) THEN
3849	IF ( .NOT. surface_fraction_f%from_file ) THEN
3850	message_string = 'If more than one surface type is ' // &
3851	'given at a location, surface_fraction ' // &
3852	'must be provided.'
3853	CALL message( 'netcdf_data_input_mod', 'PA0565', &
3854	2, 2, myid, 6, 0 )
3855	ELSEIF ( ANY ( surface_fraction_f%frac(:,j,i) == &
3856	surface_fraction_f%fill ) ) THEN
3857	message_string = 'If more than one surface type is ' // &
3858	'given at a location, surface_fraction ' // &
3859	'must be provided.'
3860	CALL message( 'netcdf_data_input_mod', 'PA0565', &
3861	2, 2, myid, 6, 0 )
3862	ENDIF
3863	ENDIF
3864	!
3865	!-- Check for further mismatches. e.g. relative fractions exceed 1 or
3866	!-- vegetation_type is set but surface vegetation fraction is zero,
3867	!-- etc..
3868	IF ( surface_fraction_f%from_file ) THEN
3869	!
3870	!-- Sum of relative fractions must not exceed 1.
3871	IF ( SUM ( surface_fraction_f%frac(0:2,j,i) ) > 1.0_wp ) THEN
3872	message_string = 'surface_fraction must not exceed 1'
3873	CALL message( 'netcdf_data_input_mod', 'PA0566', &
3874	2, 2, myid, 6, 0 )
3875	ENDIF
3876	!
3877	!-- Relative fraction for a type must not be zero at locations where
3878	!-- this type is set.
3879	IF ( &
3880	( vegetation_type_f%var(j,i) /= vegetation_type_f%fill .AND.&
3881	( surface_fraction_f%frac(ind_veg_wall,j,i) == 0.0_wp .OR. &
3882	surface_fraction_f%frac(ind_veg_wall,j,i) == &
3883	surface_fraction_f%fill ) &
3884	) .OR. &
3885	( pavement_type_f%var(j,i) /= pavement_type_f%fill .AND. &
3886	( surface_fraction_f%frac(ind_pav_green,j,i) == 0.0_wp .OR. &
3887	surface_fraction_f%frac(ind_pav_green,j,i) == &
3888	surface_fraction_f%fill ) &
3889	) .OR. &
3890	( water_type_f%var(j,i) /= water_type_f%fill .AND. &
3891	( surface_fraction_f%frac(ind_wat_win,j,i) == 0.0_wp .OR. &
3892	surface_fraction_f%frac(ind_wat_win,j,i) == &
3893	surface_fraction_f%fill ) &
3894	) ) THEN
3895	WRITE( message_string, * ) 'Mismatch in setting of ' // &
3896	'surface_fraction. Vegetation-, pavement-, or '// &
3897	'water surface is given at (i,j) = ( ', i, j, &
3898	' ), but surface fraction is 0 for the given type.'
3899	CALL message( 'netcdf_data_input_mod', 'PA0567', &
3900	2, 2, myid, 6, 0 )
3901	ENDIF
3902	!
3903	!-- Relative fraction for a type must not contain non-zero values
3904	!-- if this type is not set.
3905	IF ( &
3906	( vegetation_type_f%var(j,i) == vegetation_type_f%fill .AND.&
3907	( surface_fraction_f%frac(ind_veg_wall,j,i) /= 0.0_wp .AND. &
3908	surface_fraction_f%frac(ind_veg_wall,j,i) /= &
3909	surface_fraction_f%fill ) &
3910	) .OR. &
3911	( pavement_type_f%var(j,i) == pavement_type_f%fill .AND. &
3912	( surface_fraction_f%frac(ind_pav_green,j,i) /= 0.0_wp .AND. &
3913	surface_fraction_f%frac(ind_pav_green,j,i) /= &
3914	surface_fraction_f%fill ) &
3915	) .OR. &
3916	( water_type_f%var(j,i) == water_type_f%fill .AND. &
3917	( surface_fraction_f%frac(ind_wat_win,j,i) /= 0.0_wp .AND. &
3918	surface_fraction_f%frac(ind_wat_win,j,i) /= &
3919	surface_fraction_f%fill ) &
3920	) ) THEN
3921	WRITE( message_string, * ) 'Mismatch in setting of ' // &
3922	'surface_fraction. Vegetation-, pavement-, or '// &
3923	'water surface is not given at (i,j) = ( ', i, j, &
3924	' ), but surface fraction is not 0 for the ' // &
3925	'given type.'
3926	CALL message( 'netcdf_data_input_mod', 'PA0568', &
3927	2, 2, myid, 6, 0 )
3928	ENDIF
3929	ENDIF
3930	!
3931	!-- Check vegetation_pars. If vegetation_type is 0, all parameters
3932	!-- need to be set, otherwise, single parameters set by
3933	!-- vegetation_type can be overwritten.
3934	IF ( vegetation_type_f%from_file ) THEN
3935	IF ( vegetation_type_f%var(j,i) == 0 ) THEN
3936	IF ( ANY( vegetation_pars_f%pars_xy(:,j,i) == &
3937	vegetation_pars_f%fill ) ) THEN
3938	message_string = 'If vegetation_type(y,x) = 0, all ' // &
3939	'parameters of vegetation_pars at '// &
3940	'this location must be set.'
3941	CALL message( 'netcdf_data_input_mod', 'PA0569', &
3942	2, 2, myid, 6, 0 )
3943	ENDIF
3944	ENDIF
3945	ENDIF
3946	!
3947	!-- Check root distribution. If vegetation_type is 0, all levels must
3948	!-- be set.
3949	IF ( vegetation_type_f%from_file ) THEN
3950	IF ( vegetation_type_f%var(j,i) == 0 ) THEN
3951	IF ( ANY( root_area_density_lsm_f%var(:,j,i) == &
3952	root_area_density_lsm_f%fill ) ) THEN
3953	message_string = 'If vegetation_type(y,x) = 0, all ' // &
3954	'levels of root_area_dens_s ' // &
3955	'must be set at this location.'
3956	CALL message( 'netcdf_data_input_mod', 'PA0570', &
3957	2, 2, myid, 6, 0 )
3958	ENDIF
3959	ENDIF
3960	ENDIF
3961	!
3962	!-- Check soil parameters. If soil_type is 0, all parameters
3963	!-- must be set.
3964	IF ( soil_type_f%from_file ) THEN
3965	check_passed = .TRUE.
3966	IF ( ALLOCATED( soil_type_f%var_2d ) ) THEN
3967	IF ( soil_type_f%var_2d(j,i) == 0 ) THEN
3968	IF ( ANY( soil_pars_f%pars_xy(:,j,i) == &
3969	soil_pars_f%fill ) ) check_passed = .FALSE.
3970	ENDIF
3971	ELSE
3972	IF ( ANY( soil_type_f%var_3d(:,j,i) == 0 ) ) THEN
3973	IF ( ANY( soil_pars_f%pars_xy(:,j,i) == &
3974	soil_pars_f%fill ) ) check_passed = .FALSE.
3975	ENDIF
3976	ENDIF
3977	IF ( .NOT. check_passed ) THEN
3978	message_string = 'If soil_type(y,x) = 0, all levels of ' //&
3979	'soil_pars at this location must be set.'
3980	CALL message( 'netcdf_data_input_mod', 'PA0571', &
3981	2, 2, myid, 6, 0 )
3982	ENDIF
3983	ENDIF
3984
3985	!
3986	!-- Check building parameters. If building_type is 0, all parameters
3987	!-- must be set.
3988	IF ( building_type_f%from_file ) THEN
3989	IF ( building_type_f%var(j,i) == 0 ) THEN
3990	IF ( ANY( building_pars_f%pars_xy(:,j,i) == &
3991	building_pars_f%fill ) ) THEN
3992	message_string = 'If building_type(y,x) = 0, all ' // &
3993	'parameters of building_pars at this '//&
3994	'location must be set.'
3995	CALL message( 'netcdf_data_input_mod', 'PA0572', &
3996	2, 2, myid, 6, 0 )
3997	ENDIF
3998	ENDIF
3999	ENDIF
4000	!
4001	!-- Check if building_type is set at each building and vice versa.
4002	IF ( building_type_f%from_file .AND. buildings_f%from_file ) THEN
4003	IF ( buildings_f%lod == 1 ) THEN
4004	IF ( buildings_f%var_2d(j,i) /= buildings_f%fill1 .AND. &
4005	building_type_f%var(j,i) == building_type_f%fill ) THEN
4006	WRITE( message_string, * ) 'Each location where a ' // &
4007	'building is set requires a type ' // &
4008	'( and vice versa ) in case the ' // &
4009	'urban-surface model is applied. ' // &
4010	'i, j = ', i, j
4011	CALL message( 'netcdf_data_input_mod', 'PA0573', &
4012	2, 2, myid, 6, 0 )
4013	ENDIF
4014	ENDIF
4015	IF ( buildings_f%lod == 2 ) THEN
4016	IF ( ANY( buildings_f%var_3d(:,j,i) == 1 ) .AND. &
4017	building_type_f%var(j,i) == building_type_f%fill ) THEN
4018	WRITE( message_string, * ) 'Each location where a ' // &
4019	'building is set requires a type ' // &
4020	'( and vice versa ) in case the ' // &
4021	'urban-surface model is applied. ' // &
4022	'i, j = ', i, j
4023	CALL message( 'netcdf_data_input_mod', 'PA0573', &
4024	2, 2, myid, 6, 0 )
4025	ENDIF
4026	ENDIF
4027	ENDIF
4028	!
4029	!-- Check if at each location where a building is present also an ID
4030	!-- is set and vice versa.
4031	IF ( buildings_f%from_file ) THEN
4032	IF ( buildings_f%lod == 1 ) THEN
4033	IF ( buildings_f%var_2d(j,i) /= buildings_f%fill1 .AND. &
4034	building_id_f%var(j,i) == building_id_f%fill ) THEN
4035	WRITE( message_string, * ) 'Each location where a ' // &
4036	'building is set requires an ID ' // &
4037	'( and vice versa ). i, j = ', i, j
4038	CALL message( 'netcdf_data_input_mod', 'PA0574', &
4039	2, 2, myid, 6, 0 )
4040	ENDIF
4041	ELSEIF ( buildings_f%lod == 2 ) THEN
4042	IF ( ANY( buildings_f%var_3d(:,j,i) == 1 ) .AND. &
4043	building_id_f%var(j,i) == building_id_f%fill ) THEN
4044	WRITE( message_string, * ) 'Each location where a ' // &
4045	'building is set requires an ID ' // &
4046	'( and vice versa ). i, j = ', i, j
4047	CALL message( 'netcdf_data_input_mod', 'PA0574', &
4048	2, 2, myid, 6, 0 )
4049	ENDIF
4050	ENDIF
4051	ENDIF
4052	!
4053	!-- Check if building ID is set where a bulding is defined.
4054	IF ( buildings_f%from_file ) THEN
4055	IF ( buildings_f%lod == 1 ) THEN
4056	IF ( buildings_f%var_2d(j,i) /= buildings_f%fill1 .AND. &
4057	building_id_f%var(j,i) == building_id_f%fill ) THEN
4058	WRITE( message_string, * ) 'Each building grid point '// &
4059	'requires an ID.', i, j
4060	CALL message( 'netcdf_data_input_mod', 'PA0575', &
4061	2, 2, myid, 6, 0 )
4062	ENDIF
4063	ELSEIF ( buildings_f%lod == 2 ) THEN
4064	IF ( ANY( buildings_f%var_3d(:,j,i) == 1 ) .AND. &
4065	building_id_f%var(j,i) == building_id_f%fill ) THEN
4066	WRITE( message_string, * ) 'Each building grid point '// &
4067	'requires an ID.', i, j
4068	CALL message( 'netcdf_data_input_mod', 'PA0575', &
4069	2, 2, myid, 6, 0 )
4070	ENDIF
4071	ENDIF
4072	ENDIF
4073	!
4074	!-- Check albedo parameters. If albedo_type is 0, all parameters
4075	!-- must be set.
4076	IF ( albedo_type_f%from_file ) THEN
4077	IF ( albedo_type_f%var(j,i) == 0 ) THEN
4078	IF ( ANY( albedo_pars_f%pars_xy(:,j,i) == &
4079	albedo_pars_f%fill ) ) THEN
4080	message_string = 'If albedo_type(y,x) = 0, all ' // &
4081	'parameters of albedo_pars at this ' // &
4082	'location must be set.'
4083	CALL message( 'netcdf_data_input_mod', 'PA0576', &
4084	2, 2, myid, 6, 0 )
4085	ENDIF
4086	ENDIF
4087	ENDIF
4088
4089	!
4090	!-- Check pavement parameters. If pavement_type is 0, all parameters
4091	!-- of pavement_pars must be set at this location.
4092	IF ( pavement_type_f%from_file ) THEN
4093	IF ( pavement_type_f%var(j,i) == 0 ) THEN
4094	IF ( ANY( pavement_pars_f%pars_xy(:,j,i) == &
4095	pavement_pars_f%fill ) ) THEN
4096	message_string = 'If pavement_type(y,x) = 0, all ' // &
4097	'parameters of pavement_pars at this '//&
4098	'location must be set.'
4099	CALL message( 'netcdf_data_input_mod', 'PA0577', &
4100	2, 2, myid, 6, 0 )
4101	ENDIF
4102	ENDIF
4103	ENDIF
4104	!
4105	!-- Check pavement-subsurface parameters. If pavement_type is 0,
4106	!-- all parameters of pavement_subsurface_pars must be set at this
4107	!-- location.
4108	IF ( pavement_type_f%from_file ) THEN
4109	IF ( pavement_type_f%var(j,i) == 0 ) THEN
4110	IF ( ANY( pavement_subsurface_pars_f%pars_xyz(:,:,j,i) == &
4111	pavement_subsurface_pars_f%fill ) ) THEN
4112	message_string = 'If pavement_type(y,x) = 0, all ' // &
4113	'parameters of ' // &
4114	'pavement_subsurface_pars at this '// &
4115	'location must be set.'
4116	CALL message( 'netcdf_data_input_mod', 'PA0578', &
4117	2, 2, myid, 6, 0 )
4118	ENDIF
4119	ENDIF
4120	ENDIF
4121
4122	!
4123	!-- Check water parameters. If water_type is 0, all parameters
4124	!-- must be set at this location.
4125	IF ( water_type_f%from_file ) THEN
4126	IF ( water_type_f%var(j,i) == 0 ) THEN
4127	IF ( ANY( water_pars_f%pars_xy(:,j,i) == &
4128	water_pars_f%fill ) ) THEN
4129	message_string = 'If water_type(y,x) = 0, all ' // &
4130	'parameters of water_pars at this ' // &
4131	'location must be set.'
4132	CALL message( 'netcdf_data_input_mod', 'PA0579', &
4133	2, 2, myid, 6, 0 )
4134	ENDIF
4135	ENDIF
4136	ENDIF
4137
4138	ENDDO
4139	ENDDO
4140
4141	END SUBROUTINE netcdf_data_input_check_static
4142
4143	!------------------------------------------------------------------------------!
4144	! Description:
4145	! ------------
4146	!> Resize 8-bit 2D Integer array: (nys:nyn,nxl:nxr) -> (nysg:nyng,nxlg:nxrg)
4147	!------------------------------------------------------------------------------!
4148	SUBROUTINE resize_array_2d_int8( var, js, je, is, ie )
4149
4150	IMPLICIT NONE
4151
4152	INTEGER(iwp) :: je !< upper index bound along y direction
4153	INTEGER(iwp) :: js !< lower index bound along y direction
4154	INTEGER(iwp) :: ie !< upper index bound along x direction
4155	INTEGER(iwp) :: is !< lower index bound along x direction
4156
4157	INTEGER(KIND=1), DIMENSION(:,:), ALLOCATABLE :: var !< treated variable
4158	INTEGER(KIND=1), DIMENSION(:,:), ALLOCATABLE :: var_tmp !< temporary copy
4159	!
4160	!-- Allocate temporary variable
4161	ALLOCATE( var_tmp(js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4162	!
4163	!-- Temporary copy of the variable
4164	var_tmp(js:je,is:ie) = var(js:je,is:ie)
4165	!
4166	!-- Resize the array
4167	DEALLOCATE( var )
4168	ALLOCATE( var(js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4169	!
4170	!-- Transfer temporary copy back to original array
4171	var(js:je,is:ie) = var_tmp(js:je,is:ie)
4172
4173	END SUBROUTINE resize_array_2d_int8
4174
4175	!------------------------------------------------------------------------------!
4176	! Description:
4177	! ------------
4178	!> Resize 32-bit 2D Integer array: (nys:nyn,nxl:nxr) -> (nysg:nyng,nxlg:nxrg)
4179	!------------------------------------------------------------------------------!
4180	SUBROUTINE resize_array_2d_int32( var, js, je, is, ie )
4181
4182	IMPLICIT NONE
4183
4184	INTEGER(iwp) :: je !< upper index bound along y direction
4185	INTEGER(iwp) :: js !< lower index bound along y direction
4186	INTEGER(iwp) :: ie !< upper index bound along x direction
4187	INTEGER(iwp) :: is !< lower index bound along x direction
4188
4189	INTEGER(iwp), DIMENSION(:,:), ALLOCATABLE :: var !< treated variable
4190	INTEGER(iwp), DIMENSION(:,:), ALLOCATABLE :: var_tmp !< temporary copy
4191	!
4192	!-- Allocate temporary variable
4193	ALLOCATE( var_tmp(js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4194	!
4195	!-- Temporary copy of the variable
4196	var_tmp(js:je,is:ie) = var(js:je,is:ie)
4197	!
4198	!-- Resize the array
4199	DEALLOCATE( var )
4200	ALLOCATE( var(js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4201	!
4202	!-- Transfer temporary copy back to original array
4203	var(js:je,is:ie) = var_tmp(js:je,is:ie)
4204
4205	END SUBROUTINE resize_array_2d_int32
4206
4207	!------------------------------------------------------------------------------!
4208	! Description:
4209	! ------------
4210	!> Resize 8-bit 3D Integer array: (:,nys:nyn,nxl:nxr) -> (:,nysg:nyng,nxlg:nxrg)
4211	!------------------------------------------------------------------------------!
4212	SUBROUTINE resize_array_3d_int8( var, ks, ke, js, je, is, ie )
4213
4214	IMPLICIT NONE
4215
4216	INTEGER(iwp) :: je !< upper index bound along y direction
4217	INTEGER(iwp) :: js !< lower index bound along y direction
4218	INTEGER(iwp) :: ie !< upper index bound along x direction
4219	INTEGER(iwp) :: is !< lower index bound along x direction
4220	INTEGER(iwp) :: ke !< upper bound of treated array in z-direction
4221	INTEGER(iwp) :: ks !< lower bound of treated array in z-direction
4222
4223	INTEGER(KIND=1), DIMENSION(:,:,:), ALLOCATABLE :: var !< treated variable
4224	INTEGER(KIND=1), DIMENSION(:,:,:), ALLOCATABLE :: var_tmp !< temporary copy
4225	!
4226	!-- Allocate temporary variable
4227	ALLOCATE( var_tmp(ks:ke,js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4228	!
4229	!-- Temporary copy of the variable
4230	var_tmp(ks:ke,js:je,is:ie) = var(ks:ke,js:je,is:ie)
4231	!
4232	!-- Resize the array
4233	DEALLOCATE( var )
4234	ALLOCATE( var(ks:ke,js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4235	!
4236	!-- Transfer temporary copy back to original array
4237	var(ks:ke,js:je,is:ie) = var_tmp(ks:ke,js:je,is:ie)
4238
4239	END SUBROUTINE resize_array_3d_int8
4240
4241	!------------------------------------------------------------------------------!
4242	! Description:
4243	! ------------
4244	!> Resize 3D Real array: (:,nys:nyn,nxl:nxr) -> (:,nysg:nyng,nxlg:nxrg)
4245	!------------------------------------------------------------------------------!
4246	SUBROUTINE resize_array_3d_real( var, ks, ke, js, je, is, ie )
4247
4248	IMPLICIT NONE
4249
4250	INTEGER(iwp) :: je !< upper index bound along y direction
4251	INTEGER(iwp) :: js !< lower index bound along y direction
4252	INTEGER(iwp) :: ie !< upper index bound along x direction
4253	INTEGER(iwp) :: is !< lower index bound along x direction
4254	INTEGER(iwp) :: ke !< upper bound of treated array in z-direction
4255	INTEGER(iwp) :: ks !< lower bound of treated array in z-direction
4256
4257	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: var !< treated variable
4258	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: var_tmp !< temporary copy
4259	!
4260	!-- Allocate temporary variable
4261	ALLOCATE( var_tmp(ks:ke,js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4262	!
4263	!-- Temporary copy of the variable
4264	var_tmp(ks:ke,js:je,is:ie) = var(ks:ke,js:je,is:ie)
4265	!
4266	!-- Resize the array
4267	DEALLOCATE( var )
4268	ALLOCATE( var(ks:ke,js-nbgp:je+nbgp,is-nbgp:ie+nbgp) )
4269	!
4270	!-- Transfer temporary copy back to original array
4271	var(ks:ke,js:je,is:ie) = var_tmp(ks:ke,js:je,is:ie)
4272
4273	END SUBROUTINE resize_array_3d_real
4274
4275	!------------------------------------------------------------------------------!
4276	! Description:
4277	! ------------
4278	!> Resize 4D Real array: (:,:,nys:nyn,nxl:nxr) -> (:,nysg:nyng,nxlg:nxrg)
4279	!------------------------------------------------------------------------------!
4280	SUBROUTINE resize_array_4d_real( var, k1s, k1e, k2s, k2e, js, je, is, ie )
4281
4282	IMPLICIT NONE
4283
4284	INTEGER(iwp) :: je !< upper index bound along y direction
4285	INTEGER(iwp) :: js !< lower index bound along y direction
4286	INTEGER(iwp) :: ie !< upper index bound along x direction
4287	INTEGER(iwp) :: is !< lower index bound along x direction
4288	INTEGER(iwp) :: k1e !< upper bound of treated array in z-direction
4289	INTEGER(iwp) :: k1s !< lower bound of treated array in z-direction
4290	INTEGER(iwp) :: k2e !< upper bound of treated array along parameter space
4291	INTEGER(iwp) :: k2s !< lower bound of treated array along parameter space
4292
4293	REAL(wp), DIMENSION(:,:,:,:), ALLOCATABLE :: var !< treated variable
4294	REAL(wp), DIMENSION(:,:,:,:), ALLOCATABLE :: var_tmp !< temporary copy
4295	!
4296	!-- Allocate temporary variable
4297	ALLOCATE( var_tmp(k1s:k1e,k2s: