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netcdf_data_input_mod.f90 @ 3516

Last change on this file since 3516 was 3516, checked in by gronemeier, 6 years ago
bugfix: difference in z coordinate between file and PALM must be <1e-6; output of error 553 for all PEs (netcdf_data_input_mod)
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1	!> @file netcdf_data_input_mod.f90
2	!------------------------------------------------------------------------------!
3	! This file is part of the PALM model system.
4	!
5	! PALM is free software: you can redistribute it and/or modify it under the
6	! terms of the GNU General Public License as published by the Free Software
7	! Foundation, either version 3 of the License, or (at your option) any later
8	! version.
9	!
10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
13	!
14	! You should have received a copy of the GNU General Public License along with
15	! PALM. If not, see <http://www.gnu.org/licenses/>.
16	!
17	! Copyright 1997-2018 Leibniz Universitaet Hannover
18	!------------------------------------------------------------------------------!
19	!
20	! Current revisions:
21	! -----------------
22	!
23	!
24	! Former revisions:
25	! -----------------
26	! $Id: netcdf_data_input_mod.f90 3516 2018-11-12 15:49:39Z gronemeier $
27	! bugfix: - difference in z coordinate between file and PALM must be <1e-6
28	! - output of error 553 for all PEs
29	!
30	! 3498 2018-11-07 10:53:03Z gronemeier
31	! Bugfix: print error message by processor which encounters the error
32	!
33	! 3485 2018-11-03 17:09:40Z gronemeier
34	! - get central meridian from origin_lon if crs does not exist
35	! - set default origin_lon to 0
36	!
37	! 3483 2018-11-02 14:19:26Z raasch
38	! bugfix: misplaced directives for netCDF fixed
39	!
40	! 3474 2018-10-30 21:07:39Z kanani
41	! Add UV exposure model input (Schrempf)
42	!
43	! 3472 2018-10-30 20:43:50Z suehring
44	! Salsa implemented
45	!
46	! 3464 2018-10-30 18:08:55Z kanani
47	! Define coordinate reference system (crs) and read from input dataset
48	! Revise default values for reference coordinates
49	!
50	! 3459 2018-10-30 15:04:11Z gronemeier
51	! from chemistry branch r3443, banzhafs, Russo:
52	! Uncommented lines on dimension of surface_fractions
53	! Removed par_emis_time_factor variable, moved to chem_emissions_mod
54	! Initialized nspec and other emission variables at time of declaration
55	! Modified EXPERT mode to PRE-PROCESSED mode
56	! Introduced Chemistry static netcdf file
57	! Added the routine for reading-in netcdf data for chemistry
58	! Added routines to get_variable interface specific for chemistry files
59	!
60	! 3429 2018-10-25 13:04:23Z knoop
61	! add default values of origin_x/y/z
62	!
63	! 3404 2018-10-23 13:29:11Z suehring
64	! Consider time-dependent geostrophic wind components in offline nesting
65	!
66	! 3376 2018-10-19 10:15:32Z suehring
67	! Additional check for consistent building initialization implemented
68	!
69	! 3347 2018-10-15 14:21:08Z suehring
70	! Subroutine renamed
71	!
72	! 3257 2018-09-17 17:11:46Z suehring
73	! (from branch resler)
74	! Formatting
75	!
76	! 3298 2018-10-02 12:21:11Z kanani
77	! Modified EXPERT mode to PRE-PROCESSED mode (Russo)
78	! Introduced Chemistry static netcdf file (Russo)
79	! Added the routine for reading-in netcdf data for chemistry (Russo)
80	! Added routines to get_variable interface specific for chemistry files (Russo)
81	!
82	! 3257 2018-09-17 17:11:46Z suehring
83	! Adjust checks for building_type and building_id, which is necessary after
84	! topography filtering (building_type and id can be modified by the filtering).
85	!
86	! 3254 2018-09-17 10:53:57Z suehring
87	! Additional check for surface_fractions and and checks for building_id and
88	! building_type extended.
89	!
90	! 3241 2018-09-12 15:02:00Z raasch
91	! unused variables removed
92	!
93	! 3215 2018-08-29 09:58:59Z suehring
94	! - Separate input of soil properties from input of atmospheric data. This
95	! enables input of soil properties also in child domains without any
96	! dependence on atmospheric input
97	! - Check for missing initial 1D/3D data in dynamic input file
98	! - Revise checks for matching grid spacing in model and input file
99	! - Bugfix, add netcdf4_parallel directive for collective read operation
100	! - Revise error message numbers
101	!
102	! 3209 2018-08-27 16:58:37Z suehring
103	! Read zsoil dimension length only if soil variables are provided
104	!
105	! 3183 2018-07-27 14:25:55Z suehring
106	! Adjust input of dynamic driver according to revised Inifor version.
107	! Replace simulated_time by time_since_reference_point.
108	! Rename variables in mesoscale-offline nesting mode.
109	!
110	! 3182 2018-07-27 13:36:03Z suehring
111	! Slightly revise check for surface_fraction in order to check only the relevant
112	! fractions
113	!
114	! 3103 2018-07-04 17:30:52Z suehring
115	! New check for negative terrain heights
116	!
117	! 3089 2018-06-27 13:20:38Z suehring
118	! Revise call for message routine in case of local data inconsistencies.
119	!
120	! 3054 2018-06-01 16:08:59Z gronemeier
121	! Bugfix: force an MPI abort if errors occur while reading building heights
122	! from ASCII file
123	!
124	! 3053 2018-06-01 12:59:07Z suehring
125	! Revise checks for variable surface_fraction
126	!
127	! 3051 2018-05-30 17:43:55Z suehring
128	! - Speed-up NetCDF input
129	! - Revise input routines and remove NetCDF input via IO-blocks since this is
130	! not working in parallel mode in case blocking collective read operations
131	! are done
132	! - Temporarily revoke renaming of input variables in dynamic driver (tend_ug,
133	! tend_vg, zsoil) in order to keep dynamic input file working with current
134	! model version
135	! - More detailed error messages created
136	!
137	! 3045 2018-05-28 07:55:41Z Giersch
138	! Error messages revised
139	!
140	! 3041 2018-05-25 10:39:54Z gronemeier
141	! Add data type for global file attributes
142	! Add read of global attributes of static driver
143	!
144	! 3037 2018-05-24 10:39:29Z gronemeier
145	! renamed 'depth' to 'zsoil'
146	!
147	! 3036 2018-05-24 10:18:26Z gronemeier
148	! Revision of input vars according to UC2 data standard
149	! - renamed 'orography_2D' to 'zt'
150	! - renamed 'buildings_2D' to 'buildings_2d'
151	! - renamed 'buildings_3D' to 'buildings_3d'
152	! - renamed 'leaf_are_density' to 'lad'
153	! - renamed 'basal_are_density' to 'bad'
154	! - renamed 'root_are_density_lad' to 'root_area_dens_r'
155	! - renamed 'root_are_density_lsm' to 'root_area_dens_s'
156	! - renamed 'ls_forcing_ug' to 'tend_ug'
157	! - renamed 'ls_forcing_vg' to 'tend_vg'
158	!
159	! 3019 2018-05-13 07:05:43Z maronga
160	! Improved reading speed of large NetCDF files
161	!
162	! 2963 2018-04-12 14:47:44Z suehring
163	! - Revise checks for static input variables.
164	! - Introduce index for vegetation/wall, pavement/green-wall and water/window
165	! surfaces, for clearer access of surface fraction, albedo, emissivity, etc. .
166	!
167	! 2958 2018-04-11 15:38:13Z suehring
168	! Synchronize longitude and latitude between nested model domains, values are
169	! taken from the root model.
170	!
171	! 2955 2018-04-09 15:14:01Z suehring
172	! Extend checks for consistent setting of buildings, its ID and type.
173	! Add log-points to measure CPU time of NetCDF data input.
174	!
175	! 2953 2018-04-09 11:26:02Z suehring
176	! Bugfix in checks for initialization data
177	!
178	! 2947 2018-04-04 18:01:41Z suehring
179	! Checks for dynamic input revised
180	!
181	! 2946 2018-04-04 17:01:23Z suehring
182	! Bugfix for revision 2945, perform checks only if dynamic input file is
183	! available.
184	!
185	! 2945 2018-04-04 16:27:14Z suehring
186	! - Mimic for topography input slightly revised, in order to enable consistency
187	! checks
188	! - Add checks for dimensions in dynamic input file and move already existing
189	! checks
190	!
191	! 2938 2018-03-27 15:52:42Z suehring
192	! Initial read of geostrophic wind components from dynamic driver.
193	!
194	! 2773 2018-01-30 14:12:54Z suehring
195	! Revise checks for surface_fraction.
196	!
197	! 2925 2018-03-23 14:54:11Z suehring
198	! Check for further inconsistent settings of surface_fractions.
199	! Some messages slightly rephrased and error numbers renamed.
200	!
201	! 2898 2018-03-15 13:03:01Z suehring
202	! Check if each building has a type. Further, check if dimensions in static
203	! input file match the model dimensions.
204	!
205	! 2897 2018-03-15 11:47:16Z suehring
206	! Relax restrictions for topography input, terrain and building heights can be
207	! input separately and are not mandatory any more.
208	!
209	! 2874 2018-03-13 10:55:42Z knoop
210	! Bugfix: wrong placement of netcdf cpp-macros fixed
211	!
212	! 2794 2018-02-07 14:09:43Z knoop
213	! Check if 3D building input is consistent to numeric grid.
214	!
215	! 2773 2018-01-30 14:12:54Z suehring
216	! - Enable initialization with 3D topography.
217	! - Move check for correct initialization in nesting mode to check_parameters.
218	!
219	! 2772 2018-01-29 13:10:35Z suehring
220	! Initialization of simulation independent on land-surface model.
221	!
222	! 2746 2018-01-15 12:06:04Z suehring
223	! Read plant-canopy variables independently on land-surface model usage
224	!
225	! 2718 2018-01-02 08:49:38Z maronga
226	! Corrected "Former revisions" section
227	!
228	! 2711 2017-12-20 17:04:49Z suehring
229	! Rename subroutine close_file to avoid double-naming.
230	!
231	! 2700 2017-12-15 14:12:35Z suehring
232	!
233	! 2696 2017-12-14 17:12:51Z kanani
234	! Initial revision (suehring)
235	!
236	!
237	!
238	!
239	! Authors:
240	! --------
241	! @author Matthias Suehring
242	!
243	! Description:
244	! ------------
245	!> Modulue contains routines to input data according to Palm input data
246	!> standart using dynamic and static input files.
247	!> @todo - Chemistry: revise reading of netcdf file and ajdust formatting according to standard!!!
248	!> @todo - Order input alphabetically
249	!> @todo - Revise error messages and error numbers
250	!> @todo - Input of missing quantities (chemical species, emission rates)
251	!> @todo - Defninition and input of still missing variable attributes
252	!> @todo - Input of initial geostrophic wind profiles with cyclic conditions.
253	!------------------------------------------------------------------------------!
254	MODULE netcdf_data_input_mod
255
256	USE control_parameters, &
257	ONLY: coupling_char, io_blocks, io_group
258
259	USE cpulog, &
260	ONLY: cpu_log, log_point_s
261
262	USE kinds
263
264	#if defined ( __netcdf )
265	USE NETCDF
266	#endif
267
268	USE pegrid
269
270	USE surface_mod, &
271	ONLY: ind_pav_green, ind_veg_wall, ind_wat_win
272	!
273	!-- Define type for dimensions.
274	TYPE dims_xy
275	INTEGER(iwp) :: nx !< dimension length in x
276	INTEGER(iwp) :: ny !< dimension length in y
277	INTEGER(iwp) :: nz !< dimension length in z
278	REAL(wp), DIMENSION(:), ALLOCATABLE :: x !< dimension array in x
279	REAL(wp), DIMENSION(:), ALLOCATABLE :: y !< dimension array in y
280	REAL(wp), DIMENSION(:), ALLOCATABLE :: z !< dimension array in z
281	END TYPE dims_xy
282	!
283	!-- Define data type for nesting in larger-scale models like COSMO.
284	!-- Data type comprises u, v, w, pt, and q at lateral and top boundaries.
285	TYPE nest_offl_type
286
287	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names
288
289	INTEGER(iwp) :: nt !< number of time levels in dynamic input file
290	INTEGER(iwp) :: nzu !< number of vertical levels on scalar grid in dynamic input file
291	INTEGER(iwp) :: nzw !< number of vertical levels on w grid in dynamic input file
292	INTEGER(iwp) :: tind !< time index for reference time in mesoscale-offline nesting
293	INTEGER(iwp) :: tind_p !< time index for following time in mesoscale-offline nesting
294
295	LOGICAL :: init = .FALSE.
296	LOGICAL :: from_file = .FALSE.
297
298	REAL(wp), DIMENSION(:), ALLOCATABLE :: surface_pressure !< time dependent surface pressure
299	REAL(wp), DIMENSION(:), ALLOCATABLE :: time !< time levels in dynamic input file
300	REAL(wp), DIMENSION(:), ALLOCATABLE :: zu_atmos !< vertical levels at scalar grid in dynamic input file
301	REAL(wp), DIMENSION(:), ALLOCATABLE :: zw_atmos !< vertical levels at w grid in dynamic input file
302
303	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: ug !< domain-averaged geostrophic component
304	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: vg !< domain-averaged geostrophic component
305
306	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: u_left !< u-component at left boundary
307	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: v_left !< v-component at left boundary
308	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: w_left !< w-component at left boundary
309	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: q_left !< mixing ratio at left boundary
310	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: pt_left !< potentital temperautre at left boundary
311
312	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: u_north !< u-component at north boundary
313	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: v_north !< v-component at north boundary
314	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: w_north !< w-component at north boundary
315	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: q_north !< mixing ratio at north boundary
316	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: pt_north !< potentital temperautre at north boundary
317
318	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: u_right !< u-component at right boundary
319	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: v_right !< v-component at right boundary
320	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: w_right !< w-component at right boundary
321	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: q_right !< mixing ratio at right boundary
322	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: pt_right !< potentital temperautre at right boundary
323
324	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: u_south !< u-component at south boundary
325	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: v_south !< v-component at south boundary
326	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: w_south !< w-component at south boundary
327	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: q_south !< mixing ratio at south boundary
328	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: pt_south !< potentital temperautre at south boundary
329
330	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: u_top !< u-component at top boundary
331	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: v_top !< v-component at top boundary
332	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: w_top !< w-component at top boundary
333	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: q_top !< mixing ratio at top boundary
334	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: pt_top !< potentital temperautre at top boundary
335
336	END TYPE nest_offl_type
337
338	TYPE init_type
339
340	CHARACTER(LEN=23) :: origin_time !< reference time of input data
341
342	INTEGER(iwp) :: lod_msoil !< level of detail - soil moisture
343	INTEGER(iwp) :: lod_pt !< level of detail - pt
344	INTEGER(iwp) :: lod_q !< level of detail - q
345	INTEGER(iwp) :: lod_tsoil !< level of detail - soil temperature
346	INTEGER(iwp) :: lod_u !< level of detail - u-component
347	INTEGER(iwp) :: lod_v !< level of detail - v-component
348	INTEGER(iwp) :: lod_w !< level of detail - w-component
349	INTEGER(iwp) :: nx !< number of scalar grid points along x in dynamic input file
350	INTEGER(iwp) :: nxu !< number of u grid points along x in dynamic input file
351	INTEGER(iwp) :: ny !< number of scalar grid points along y in dynamic input file
352	INTEGER(iwp) :: nyv !< number of v grid points along y in dynamic input file
353	INTEGER(iwp) :: nzs !< number of vertical soil levels in dynamic input file
354	INTEGER(iwp) :: nzu !< number of vertical levels on scalar grid in dynamic input file
355	INTEGER(iwp) :: nzw !< number of vertical levels on w grid in dynamic input file
356
357	LOGICAL :: from_file_msoil = .FALSE. !< flag indicating whether soil moisture is already initialized from file
358	LOGICAL :: from_file_pt = .FALSE. !< flag indicating whether pt is already initialized from file
359	LOGICAL :: from_file_q = .FALSE. !< flag indicating whether q is already initialized from file
360	LOGICAL :: from_file_tsoil = .FALSE. !< flag indicating whether soil temperature is already initialized from file
361	LOGICAL :: from_file_u = .FALSE. !< flag indicating whether u is already initialized from file
362	LOGICAL :: from_file_ug = .FALSE. !< flag indicating whether ug is already initialized from file
363	LOGICAL :: from_file_v = .FALSE. !< flag indicating whether v is already initialized from file
364	LOGICAL :: from_file_vg = .FALSE. !< flag indicating whether ug is already initialized from file
365	LOGICAL :: from_file_w = .FALSE. !< flag indicating whether w is already initialized from file
366
367	REAL(wp) :: fill_msoil !< fill value for soil moisture
368	REAL(wp) :: fill_pt !< fill value for pt
369	REAL(wp) :: fill_q !< fill value for q
370	REAL(wp) :: fill_tsoil !< fill value for soil temperature
371	REAL(wp) :: fill_u !< fill value for u
372	REAL(wp) :: fill_v !< fill value for v
373	REAL(wp) :: fill_w !< fill value for w
374	REAL(wp) :: latitude = 0.0_wp !< latitude of the lower left corner
375	REAL(wp) :: longitude = 0.0_wp !< longitude of the lower left corner
376	REAL(wp) :: origin_x = 500000.0_wp !< UTM easting of the lower left corner
377	REAL(wp) :: origin_y = 0.0_wp !< UTM northing of the lower left corner
378	REAL(wp) :: origin_z = 0.0_wp !< reference height of input data
379	REAL(wp) :: rotation_angle = 0.0_wp !< rotation angle of input data
380
381	REAL(wp), DIMENSION(:), ALLOCATABLE :: msoil_1d !< initial vertical profile of soil moisture
382	REAL(wp), DIMENSION(:), ALLOCATABLE :: pt_init !< initial vertical profile of pt
383	REAL(wp), DIMENSION(:), ALLOCATABLE :: q_init !< initial vertical profile of q
384	REAL(wp), DIMENSION(:), ALLOCATABLE :: tsoil_1d !< initial vertical profile of soil temperature
385	REAL(wp), DIMENSION(:), ALLOCATABLE :: u_init !< initial vertical profile of u
386	REAL(wp), DIMENSION(:), ALLOCATABLE :: ug_init !< initial vertical profile of ug
387	REAL(wp), DIMENSION(:), ALLOCATABLE :: v_init !< initial vertical profile of v
388	REAL(wp), DIMENSION(:), ALLOCATABLE :: vg_init !< initial vertical profile of ug
389	REAL(wp), DIMENSION(:), ALLOCATABLE :: w_init !< initial vertical profile of w
390	REAL(wp), DIMENSION(:), ALLOCATABLE :: z_soil !< vertical levels in soil in dynamic input file, used for interpolation
391	REAL(wp), DIMENSION(:), ALLOCATABLE :: zu_atmos !< vertical levels at scalar grid in dynamic input file, used for interpolation
392	REAL(wp), DIMENSION(:), ALLOCATABLE :: zw_atmos !< vertical levels at w grid in dynamic input file, used for interpolation
393
394
395	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: msoil_3d !< initial 3d soil moisture provide by Inifor and interpolated onto soil grid
396	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: tsoil_3d !< initial 3d soil temperature provide by Inifor and interpolated onto soil grid
397
398	END TYPE init_type
399
400	!-- Data type for the general information of chemistry emissions, do not dependent on the particular chemical species
401	TYPE chem_emis_att_type
402
403	!-DIMENSIONS
404	INTEGER(iwp) :: nspec=0 !< number of chem species for which emission values are provided
405	INTEGER(iwp) :: ncat=0 !< number of emission categories
406	INTEGER(iwp) :: nvoc=0 !< number of VOCs components
407	INTEGER(iwp) :: npm=0 !< number of PMs components
408	INTEGER(iwp) :: nnox=2 !< number of NOx components: NO and NO2
409	INTEGER(iwp) :: nsox=2 !< number of SOx components: SO and SO4
410	INTEGER(iwp) :: nhoursyear !< number of hours of a specific year in the HOURLY mode
411	! of the default mode
412	INTEGER(iwp) :: nmonthdayhour !< number of month days and hours in the MDH mode
413	! of the default mode
414	INTEGER(iwp) :: dt_emission !< Number of emissions timesteps for one year
415	! in the pre-processed emissions case
416	!-- 1d emission input variables
417	CHARACTER (LEN=25),ALLOCATABLE, DIMENSION(:) :: pm_name !< Names of PMs components
418	CHARACTER (LEN=25),ALLOCATABLE, DIMENSION(:) :: cat_name !< Emission categories names
419	CHARACTER (LEN=25),ALLOCATABLE, DIMENSION(:) :: species_name !< Names of emission chemical species
420	CHARACTER (LEN=25),ALLOCATABLE, DIMENSION(:) :: voc_name !< Names of VOCs components
421	CHARACTER (LEN=25) :: units !< Units
422
423	INTEGER(iwp) :: i_hour !< indices for assigning the emission values at different timesteps
424	INTEGER(iwp),ALLOCATABLE, DIMENSION(:) :: cat_index !< Index of emission categories
425	INTEGER(iwp),ALLOCATABLE, DIMENSION(:) :: species_index !< Index of emission chem species
426
427	REAL(wp),ALLOCATABLE, DIMENSION(:) :: xm !< Molecular masses of emission chem species
428
429	!-- 2d emission input variables
430	REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: hourly_emis_time_factor !< Time factors for HOURLY emissions (DEFAULT mode)
431	REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: mdh_emis_time_factor !< Time factors for MDH emissions (DEFAULT mode)
432	REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: nox_comp !< Composition of NO and NO2
433	REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: sox_comp !< Composition of SO2 and SO4
434	REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: voc_comp !< Composition of different VOC components (number not fixed)
435
436	!-- 3d emission input variables
437	REAL(wp),ALLOCATABLE, DIMENSION(:,:,:) :: pm_comp !< Composition of different PMs components (number not fixed)
438
439	END TYPE chem_emis_att_type
440
441
442	!-- Data type for the values of chemistry emissions ERUSSO
443	TYPE chem_emis_val_type
444
445	!REAL(wp),ALLOCATABLE, DIMENSION(:,:) :: stack_height !< stack height
446
447	!-- 3d emission input variables
448	REAL(wp),ALLOCATABLE, DIMENSION(:,:,:) :: default_emission_data !< Input Values emissions DEFAULT mode
449
450	!-- 4d emission input variables
451	REAL(wp),ALLOCATABLE, DIMENSION(:,:,:,:) :: preproc_emission_data !< Input Values emissions PRE-PROCESSED mode
452
453	END TYPE chem_emis_val_type
454
455	!
456	!-- Define data structures for different input data types.
457	!-- 8-bit Integer 2D
458	TYPE int_2d_8bit
459	INTEGER(KIND=1) :: fill = -127 !< fill value
460	INTEGER(KIND=1), DIMENSION(:,:), ALLOCATABLE :: var !< respective variable
461
462	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
463	END TYPE int_2d_8bit
464	!
465	!-- 8-bit Integer 3D
466	TYPE int_3d_8bit
467	INTEGER(KIND=1) :: fill = -127 !< fill value
468	INTEGER(KIND=1), DIMENSION(:,:,:), ALLOCATABLE :: var_3d !< respective variable
469
470	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
471	END TYPE int_3d_8bit
472	!
473	!-- 32-bit Integer 2D
474	TYPE int_2d_32bit
475	INTEGER(iwp) :: fill = -9999 !< fill value
476	INTEGER(iwp), DIMENSION(:,:), ALLOCATABLE :: var !< respective variable
477
478	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
479	END TYPE int_2d_32bit
480
481	!
482	!-- Define data type to read 2D real variables
483	TYPE real_2d
484	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
485
486	REAL(wp) :: fill = -9999.9_wp !< fill value
487	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: var !< respective variable
488	END TYPE real_2d
489
490	!
491	!-- Define data type to read 3D real variables
492	TYPE real_3d
493	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
494
495	INTEGER(iwp) :: nz !< number of grid points along vertical dimension
496
497	REAL(wp) :: fill = -9999.9_wp !< fill value
498	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: var !< respective variable
499	END TYPE real_3d
500	!
501	!-- Define data structure where the dimension and type of the input depends
502	!-- on the given level of detail.
503	!-- For buildings, the input is either 2D float, or 3d byte.
504	TYPE build_in
505	INTEGER(iwp) :: lod = 1 !< level of detail
506	INTEGER(KIND=1) :: fill2 = -127 !< fill value for lod = 2
507	INTEGER(iwp) :: nz !< number of vertical layers in file
508	INTEGER(KIND=1), DIMENSION(:,:,:), ALLOCATABLE :: var_3d !< 3d variable (lod = 2)
509
510	REAL(wp), DIMENSION(:), ALLOCATABLE :: z !< vertical coordinate for 3D building, used for consistency check
511
512	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
513
514	REAL(wp) :: fill1 = -9999.9_wp !< fill values for lod = 1
515	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: var_2d !< 2d variable (lod = 1)
516	END TYPE build_in
517
518	!
519	!-- For soil_type, the input is either 2D or 3D one-byte integer.
520	TYPE soil_in
521	INTEGER(iwp) :: lod = 1 !< level of detail
522	INTEGER(KIND=1) :: fill = -127 !< fill value for lod = 2
523	INTEGER(KIND=1), DIMENSION(:,:), ALLOCATABLE :: var_2d !< 2d variable (lod = 1)
524	INTEGER(KIND=1), DIMENSION(:,:,:), ALLOCATABLE :: var_3d !< 3d variable (lod = 2)
525
526	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
527	END TYPE soil_in
528
529	!
530	!-- Define data type for fractions between surface types
531	TYPE fracs
532	INTEGER(iwp) :: nf !< total number of fractions
533	INTEGER(iwp), DIMENSION(:), ALLOCATABLE :: nfracs !< dimension array for fraction
534
535	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
536
537	REAL(wp) :: fill = -9999.9_wp !< fill value
538	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: frac !< respective fraction between different surface types
539	END TYPE fracs
540	!
541	!-- Data type for parameter lists, Depending on the given level of detail,
542	!-- the input is 3D or 4D
543	TYPE pars
544	INTEGER(iwp) :: lod = 1 !< level of detail
545	INTEGER(iwp) :: np !< total number of parameters
546	INTEGER(iwp) :: nz !< vertical dimension - number of soil layers
547	INTEGER(iwp), DIMENSION(:), ALLOCATABLE :: layers !< dimension array for soil layers
548	INTEGER(iwp), DIMENSION(:), ALLOCATABLE :: pars !< dimension array for parameters
549
550	LOGICAL :: from_file = .FALSE. !< flag indicating whether an input variable is available and read from file or default values are used
551
552	REAL(wp) :: fill = -9999.9_wp !< fill value
553	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: pars_xy !< respective parameters, level of detail = 1
554	REAL(wp), DIMENSION(:,:,:,:), ALLOCATABLE :: pars_xyz !< respective parameters, level of detail = 2
555	END TYPE pars
556	!
557	!-- Define type for global file attributes
558	!-- Please refer to the PALM data standard for a detailed description of each
559	!-- attribute.
560	TYPE global_atts_type
561	CHARACTER(LEN=12 ) :: acronym !< acronym of institution
562	CHARACTER(LEN=7) :: acronym_char = 'acronym' !< name of attribute
563	CHARACTER(LEN=200) :: author !< first name, last name, email adress
564	CHARACTER(LEN=6) :: author_char = 'author' !< name of attribute
565	CHARACTER(LEN=12 ) :: campaign !< name of campaign
566	CHARACTER(LEN=8) :: campaign_char = 'campaign' !< name of attribute
567	CHARACTER(LEN=200) :: comment !< comment to data
568	CHARACTER(LEN=7) :: comment_char = 'comment' !< name of attribute
569	CHARACTER(LEN=200) :: contact_person !< first name, last name, email adress
570	CHARACTER(LEN=14) :: contact_person_char = 'contact_person' !< name of attribute
571	CHARACTER(LEN=200) :: conventions = 'CF-1.7' !< netCDF convention
572	CHARACTER(LEN=11) :: conventions_char = 'Conventions' !< name of attribute
573	CHARACTER(LEN=23 ) :: creation_time !< creation time of data set
574	CHARACTER(LEN=13) :: creation_time_char = 'creation_time' !< name of attribute
575	CHARACTER(LEN=16 ) :: data_content !< content of data set
576	CHARACTER(LEN=12) :: data_content_char = 'data_content' !< name of attribute
577	CHARACTER(LEN=200) :: dependencies !< dependencies of data set
578	CHARACTER(LEN=12) :: dependencies_char = 'dependencies' !< name of attribute
579	CHARACTER(LEN=200) :: history !< information about data processing
580	CHARACTER(LEN=7) :: history_char = 'history' !< name of attribute
581	CHARACTER(LEN=200) :: institution !< name of responsible institution
582	CHARACTER(LEN=11) :: institution_char = 'institution' !< name of attribute
583	CHARACTER(LEN=200) :: keywords !< keywords of data set
584	CHARACTER(LEN=8) :: keywords_char = 'keywords' !< name of attribute
585	CHARACTER(LEN=200) :: license !< license of data set
586	CHARACTER(LEN=7) :: license_char = 'license' !< name of attribute
587	CHARACTER(LEN=200) :: location !< place which refers to data set
588	CHARACTER(LEN=8) :: location_char = 'location' !< name of attribute
589	CHARACTER(LEN=10) :: origin_lat_char = 'origin_lat' !< name of attribute
590	CHARACTER(LEN=10) :: origin_lon_char = 'origin_lon' !< name of attribute
591	CHARACTER(LEN=23 ) :: origin_time !< reference time
592	CHARACTER(LEN=11) :: origin_time_char = 'origin_time' !< name of attribute
593	CHARACTER(LEN=8) :: origin_x_char = 'origin_x' !< name of attribute
594	CHARACTER(LEN=8) :: origin_y_char = 'origin_y' !< name of attribute
595	CHARACTER(LEN=8) :: origin_z_char = 'origin_z' !< name of attribute
596	CHARACTER(LEN=12) :: palm_version_char = 'palm_version' !< name of attribute
597	CHARACTER(LEN=200) :: references !< literature referring to data set
598	CHARACTER(LEN=10) :: references_char = 'references' !< name of attribute
599	CHARACTER(LEN=14) :: rotation_angle_char = 'rotation_angle' !< name of attribute
600	CHARACTER(LEN=12 ) :: site !< name of model domain
601	CHARACTER(LEN=4) :: site_char = 'site' !< name of attribute
602	CHARACTER(LEN=200) :: source !< source of data set
603	CHARACTER(LEN=6) :: source_char = 'source' !< name of attribute
604	CHARACTER(LEN=200) :: title !< title of data set
605	CHARACTER(LEN=5) :: title_char = 'title' !< name of attribute
606	CHARACTER(LEN=7) :: version_char = 'version' !< name of attribute
607
608	INTEGER(iwp) :: version !< version of data set
609
610	REAL(wp) :: origin_lat !< latitude of lower left corner
611	REAL(wp) :: origin_lon !< longitude of lower left corner
612	REAL(wp) :: origin_x !< easting (UTM coordinate) of lower left corner
613	REAL(wp) :: origin_y !< northing (UTM coordinate) of lower left corner
614	REAL(wp) :: origin_z !< reference height
615	REAL(wp) :: palm_version !< PALM version of data set
616	REAL(wp) :: rotation_angle !< rotation angle of coordinate system of data set
617	END TYPE global_atts_type
618	!
619	!-- Define type for coordinate reference system (crs)
620	TYPE crs_type
621	CHARACTER(LEN=200) :: epsg_code = 'EPSG:25831' !< EPSG code
622	CHARACTER(LEN=200) :: grid_mapping_name = 'transverse_mercator' !< name of grid mapping
623	CHARACTER(LEN=200) :: long_name = 'coordinate reference system' !< name of variable crs
624	CHARACTER(LEN=200) :: units = 'm' !< unit of crs
625
626	REAL(wp) :: false_easting = 500000.0_wp !< false easting
627	REAL(wp) :: false_northing = 0.0_wp !< false northing
628	REAL(wp) :: inverse_flattening = 298.257223563_wp !< 1/f (default for WGS84)
629	REAL(wp) :: latitude_of_projection_origin = 0.0_wp !< latitude of projection origin
630	REAL(wp) :: longitude_of_central_meridian = 3.0_wp !< longitude of central meridian of UTM zone (default: zone 31)
631	REAL(wp) :: longitude_of_prime_meridian = 0.0_wp !< longitude of prime meridian
632	REAL(wp) :: scale_factor_at_central_meridian = 0.9996_wp !< scale factor of UTM coordinates
633	REAL(wp) :: semi_major_axis = 6378137.0_wp !< length of semi major axis (default for WGS84)
634	END TYPE crs_type
635
636	!
637	!-- Define variables
638	TYPE(crs_type) :: coord_ref_sys !< coordinate reference system
639
640	TYPE(dims_xy) :: dim_static !< data structure for x, y-dimension in static input file
641
642	TYPE(nest_offl_type) :: nest_offl !< data structure for data input at lateral and top boundaries (provided by Inifor)
643
644	TYPE(init_type) :: init_3d !< data structure for the initialization of the 3D flow and soil fields
645	TYPE(init_type) :: init_model !< data structure for the initialization of the model
646
647	!
648	!-- Define 2D variables of type NC_BYTE
649	TYPE(int_2d_8bit) :: albedo_type_f !< input variable for albedo type
650	TYPE(int_2d_8bit) :: building_type_f !< input variable for building type
651	TYPE(int_2d_8bit) :: pavement_type_f !< input variable for pavenment type
652	TYPE(int_2d_8bit) :: street_crossing_f !< input variable for water type
653	TYPE(int_2d_8bit) :: street_type_f !< input variable for water type
654	TYPE(int_2d_8bit) :: vegetation_type_f !< input variable for vegetation type
655	TYPE(int_2d_8bit) :: water_type_f !< input variable for water type
656	!
657	!-- Define 3D variables of type NC_BYTE
658	TYPE(int_3d_8bit) :: building_obstruction_f !< input variable for building obstruction
659	TYPE(int_3d_8bit) :: building_obstruction_full !< input variable for building obstruction
660	!
661	!-- Define 2D variables of type NC_INT
662	TYPE(int_2d_32bit) :: building_id_f !< input variable for building ID
663	!
664	!-- Define 2D variables of type NC_FLOAT
665	TYPE(real_2d) :: terrain_height_f !< input variable for terrain height
666	TYPE(real_2d) :: uvem_irradiance_f !< input variable for uvem irradiance lookup table
667	TYPE(real_2d) :: uvem_integration_f !< input variable for uvem integration
668	!
669	!-- Define 3D variables of type NC_FLOAT
670	TYPE(real_3d) :: basal_area_density_f !< input variable for basal area density - resolved vegetation
671	TYPE(real_3d) :: leaf_area_density_f !< input variable for leaf area density - resolved vegetation
672	TYPE(real_3d) :: root_area_density_lad_f !< input variable for root area density - resolved vegetation
673	TYPE(real_3d) :: root_area_density_lsm_f !< input variable for root area density - parametrized vegetation
674	TYPE(real_3d) :: uvem_radiance_f !< input variable for uvem radiance lookup table
675	TYPE(real_3d) :: uvem_projarea_f !< input variable for uvem projection area lookup table
676	!
677	!-- Define input variable for buildings
678	TYPE(build_in) :: buildings_f !< input variable for buildings
679	!
680	!-- Define input variables for soil_type
681	TYPE(soil_in) :: soil_type_f !< input variable for soil type
682
683	TYPE(fracs) :: surface_fraction_f !< input variable for surface fraction
684
685	TYPE(pars) :: albedo_pars_f !< input variable for albedo parameters
686	TYPE(pars) :: building_pars_f !< input variable for building parameters
687	TYPE(pars) :: pavement_pars_f !< input variable for pavement parameters
688	TYPE(pars) :: pavement_subsurface_pars_f !< input variable for pavement parameters
689	TYPE(pars) :: soil_pars_f !< input variable for soil parameters
690	TYPE(pars) :: vegetation_pars_f !< input variable for vegetation parameters
691	TYPE(pars) :: water_pars_f !< input variable for water parameters
692
693	TYPE(chem_emis_att_type) :: chem_emis_att !< Input Information of Chemistry Emission Data from netcdf
694	TYPE(chem_emis_val_type), ALLOCATABLE, DIMENSION(:) :: chem_emis !< Input Chemistry Emission Data from netcdf
695
696	CHARACTER(LEN=3) :: char_lod = 'lod' !< name of level-of-detail attribute in NetCDF file
697
698	CHARACTER(LEN=10) :: char_fill = '_FillValue' !< name of fill value attribute in NetCDF file
699
700	CHARACTER(LEN=100) :: input_file_static = 'PIDS_STATIC' !< Name of file which comprises static input data
701	CHARACTER(LEN=100) :: input_file_dynamic = 'PIDS_DYNAMIC' !< Name of file which comprises dynamic input data
702	CHARACTER(LEN=100) :: input_file_chem = 'PIDS_CHEM' !< Name of file which comprises chemistry input data
703	CHARACTER(LEN=100) :: input_file_uvem = 'PIDS_UVEM' !< Name of file which comprises static uv_exposure model input data
704	CHARACTER(LEN=100) :: input_file_vm = 'PIDS_VM' !< Name of file which comprises virtual measurement data
705
706	CHARACTER (LEN=25), ALLOCATABLE, DIMENSION(:) :: string_values !< output of string variables read from netcdf input files
707
708	INTEGER(iwp) :: id_emis !< NetCDF id of input file for chemistry emissions: TBD: It has to be removed
709
710	INTEGER(iwp) :: nc_stat !< return value of nf90 function call
711
712	LOGICAL :: input_pids_static = .FALSE. !< Flag indicating whether Palm-input-data-standard file containing static information exists
713	LOGICAL :: input_pids_dynamic = .FALSE. !< Flag indicating whether Palm-input-data-standard file containing dynamic information exists
714	LOGICAL :: input_pids_chem = .FALSE. !< Flag indicating whether Palm-input-data-standard file containing chemistry information exists
715	LOGICAL :: input_pids_uvem = .FALSE. !< Flag indicating whether uv-expoure-model input file containing static information exists
716	LOGICAL :: input_pids_vm = .FALSE. !< Flag indicating whether input file for virtual measurements exist
717
718	LOGICAL :: collective_read = .FALSE. !< Enable NetCDF collective read
719
720	TYPE(global_atts_type) :: input_file_atts !< global attributes of input file
721
722	SAVE
723
724	PRIVATE
725
726	INTERFACE netcdf_data_input_interpolate
727	MODULE PROCEDURE netcdf_data_input_interpolate_1d
728	MODULE PROCEDURE netcdf_data_input_interpolate_1d_soil
729	MODULE PROCEDURE netcdf_data_input_interpolate_2d
730	MODULE PROCEDURE netcdf_data_input_interpolate_3d
731	END INTERFACE netcdf_data_input_interpolate
732
733	INTERFACE netcdf_data_input_check_dynamic
734	MODULE PROCEDURE netcdf_data_input_check_dynamic
735	END INTERFACE netcdf_data_input_check_dynamic
736
737	INTERFACE netcdf_data_input_check_static
738	MODULE PROCEDURE netcdf_data_input_check_static
739	END INTERFACE netcdf_data_input_check_static
740
741	INTERFACE netcdf_data_input_chemistry_data
742	MODULE PROCEDURE netcdf_data_input_chemistry_data
743	END INTERFACE netcdf_data_input_chemistry_data
744
745	INTERFACE netcdf_data_input_get_dimension_length
746	MODULE PROCEDURE netcdf_data_input_get_dimension_length
747	END INTERFACE netcdf_data_input_get_dimension_length
748
749	INTERFACE netcdf_data_input_inquire_file
750	MODULE PROCEDURE netcdf_data_input_inquire_file
751	END INTERFACE netcdf_data_input_inquire_file
752
753	INTERFACE netcdf_data_input_init
754	MODULE PROCEDURE netcdf_data_input_init
755	END INTERFACE netcdf_data_input_init
756
757	INTERFACE netcdf_data_input_att
758	MODULE PROCEDURE netcdf_data_input_att_int
759	MODULE PROCEDURE netcdf_data_input_att_real
760	MODULE PROCEDURE netcdf_data_input_att_string
761	END INTERFACE netcdf_data_input_att
762
763	INTERFACE netcdf_data_input_init_3d
764	MODULE PROCEDURE netcdf_data_input_init_3d
765	END INTERFACE netcdf_data_input_init_3d
766
767	INTERFACE netcdf_data_input_init_lsm
768	MODULE PROCEDURE netcdf_data_input_init_lsm
769	END INTERFACE netcdf_data_input_init_lsm
770
771	INTERFACE netcdf_data_input_offline_nesting
772	MODULE PROCEDURE netcdf_data_input_offline_nesting
773	END INTERFACE netcdf_data_input_offline_nesting
774
775	INTERFACE netcdf_data_input_surface_data
776	MODULE PROCEDURE netcdf_data_input_surface_data
777	END INTERFACE netcdf_data_input_surface_data
778
779	INTERFACE netcdf_data_input_var
780	MODULE PROCEDURE netcdf_data_input_var_char
781	MODULE PROCEDURE netcdf_data_input_var_real_1d
782	MODULE PROCEDURE netcdf_data_input_var_real_2d
783	END INTERFACE netcdf_data_input_var
784
785	INTERFACE netcdf_data_input_uvem
786	MODULE PROCEDURE netcdf_data_input_uvem
787	END INTERFACE netcdf_data_input_uvem
788
789	INTERFACE get_variable
790	MODULE PROCEDURE get_variable_1d_char
791	MODULE PROCEDURE get_variable_1d_int
792	MODULE PROCEDURE get_variable_1d_real
793	MODULE PROCEDURE get_variable_2d_int8
794	MODULE PROCEDURE get_variable_2d_int32
795	MODULE PROCEDURE get_variable_2d_real
796	MODULE PROCEDURE get_variable_3d_int8
797	MODULE PROCEDURE get_variable_3d_real
798	MODULE PROCEDURE get_variable_3d_real_dynamic
799	MODULE PROCEDURE get_variable_4d_to_3d_real
800	MODULE PROCEDURE get_variable_4d_real
801	MODULE PROCEDURE get_variable_5d_to_4d_real
802	MODULE PROCEDURE get_variable_string
803	END INTERFACE get_variable
804
805	INTERFACE get_variable_pr
806	MODULE PROCEDURE get_variable_pr
807	END INTERFACE get_variable_pr
808
809	INTERFACE get_attribute
810	MODULE PROCEDURE get_attribute_real
811	MODULE PROCEDURE get_attribute_int8
812	MODULE PROCEDURE get_attribute_int32
813	MODULE PROCEDURE get_attribute_string
814	END INTERFACE get_attribute
815
816	!
817	!-- Public variables
818	PUBLIC albedo_pars_f, albedo_type_f, basal_area_density_f, buildings_f, &
819	building_id_f, building_pars_f, building_type_f, &
820	chem_emis, chem_emis_att, chem_emis_att_type, chem_emis_val_type, &
821	coord_ref_sys, &
822	init_3d, init_model, input_file_static, input_pids_static, &
823	input_pids_dynamic, input_pids_vm, input_file_vm, &
824	leaf_area_density_f, nest_offl, &
825	pavement_pars_f, pavement_subsurface_pars_f, pavement_type_f, &
826	root_area_density_lad_f, root_area_density_lsm_f, soil_pars_f, &
827	soil_type_f, street_crossing_f, street_type_f, surface_fraction_f, &
828	terrain_height_f, vegetation_pars_f, vegetation_type_f, &
829	water_pars_f, water_type_f
830	!
831	!-- Public uv exposure variables
832	PUBLIC building_obstruction_f, input_file_uvem, input_pids_uvem, &
833	netcdf_data_input_uvem, &
834	uvem_integration_f, uvem_irradiance_f, &
835	uvem_projarea_f, uvem_radiance_f
836
837	!
838	!-- Public subroutines
839	PUBLIC netcdf_data_input_check_dynamic, netcdf_data_input_check_static, &
840	netcdf_data_input_chemistry_data, &
841	netcdf_data_input_get_dimension_length, &
842	netcdf_data_input_inquire_file, &
843	netcdf_data_input_init, netcdf_data_input_init_lsm, &
844	netcdf_data_input_init_3d, netcdf_data_input_att, &
845	netcdf_data_input_interpolate, netcdf_data_input_offline_nesting, &
846	netcdf_data_input_surface_data, netcdf_data_input_topo, &
847	netcdf_data_input_var, get_attribute, get_variable, open_read_file
848
849
850	CONTAINS
851
852	!------------------------------------------------------------------------------!
853	! Description:
854	! ------------
855	!> Inquires whether NetCDF input files according to Palm-input-data standard
856	!> exist. Moreover, basic checks are performed.
857	!------------------------------------------------------------------------------!
858	SUBROUTINE netcdf_data_input_inquire_file
859
860	USE control_parameters, &
861	ONLY: topo_no_distinct
862
863	IMPLICIT NONE
864
865	#if defined ( __netcdf )
866	INQUIRE( FILE = TRIM( input_file_static ) // TRIM( coupling_char ), &
867	EXIST = input_pids_static )
868	INQUIRE( FILE = TRIM( input_file_dynamic ) // TRIM( coupling_char ), &
869	EXIST = input_pids_dynamic )
870	INQUIRE( FILE = TRIM( input_file_chem ) // TRIM( coupling_char ), &
871	EXIST = input_pids_chem )
872	INQUIRE( FILE = TRIM( input_file_uvem ) // TRIM( coupling_char ), &
873	EXIST = input_pids_uvem )
874	INQUIRE( FILE = TRIM( input_file_vm ) // TRIM( coupling_char ), &
875	EXIST = input_pids_vm )
876	#endif
877
878	!
879	!-- As long as topography can be input via ASCII format, no distinction
880	!-- between building and terrain can be made. This case, classify all
881	!-- surfaces as default type. Same in case land-surface and urban-surface
882	!-- model are not applied.
883	IF ( .NOT. input_pids_static ) THEN
884	topo_no_distinct = .TRUE.
885	ENDIF
886
887	END SUBROUTINE netcdf_data_input_inquire_file
888
889	!------------------------------------------------------------------------------!
890	! Description:
891	! ------------
892	!> Reads global attributes and coordinate reference system required for
893	!> initialization of the model.
894	!------------------------------------------------------------------------------!
895	SUBROUTINE netcdf_data_input_init
896
897	IMPLICIT NONE
898
899	INTEGER(iwp) :: id_mod !< NetCDF id of input file
900	INTEGER(iwp) :: var_id_crs !< NetCDF id of variable crs
901
902	IF ( .NOT. input_pids_static ) RETURN
903
904	#if defined ( __netcdf )
905	!
906	!-- Open file in read-only mode
907	CALL open_read_file( TRIM( input_file_static ) // &
908	TRIM( coupling_char ), id_mod )
909	!
910	!-- Read global attributes
911	CALL get_attribute( id_mod, input_file_atts%origin_lat_char, &
912	input_file_atts%origin_lat, .TRUE. )
913
914	CALL get_attribute( id_mod, input_file_atts%origin_lon_char, &
915	input_file_atts%origin_lon, .TRUE. )
916
917	CALL get_attribute( id_mod, input_file_atts%origin_time_char, &
918	input_file_atts%origin_time, .TRUE. )
919
920	CALL get_attribute( id_mod, input_file_atts%origin_x_char, &
921	input_file_atts%origin_x, .TRUE. )
922
923	CALL get_attribute( id_mod, input_file_atts%origin_y_char, &
924	input_file_atts%origin_y, .TRUE. )
925
926	CALL get_attribute( id_mod, input_file_atts%origin_z_char, &
927	input_file_atts%origin_z, .TRUE. )
928
929	CALL get_attribute( id_mod, input_file_atts%rotation_angle_char, &
930	input_file_atts%rotation_angle, .TRUE. )
931	!
932	!-- Read coordinate reference system if available
933	nc_stat = NF90_INQ_VARID( id_mod, 'crs', var_id_crs )
934	IF ( nc_stat == NF90_NOERR ) THEN
935	CALL get_attribute( id_mod, 'epsg_code', &
936	coord_ref_sys%epsg_code, &
937	.FALSE., 'crs' )
938	CALL get_attribute( id_mod, 'false_easting', &
939	coord_ref_sys%false_easting, &
940	.FALSE., 'crs' )
941	CALL get_attribute( id_mod, 'false_northing', &
942	coord_ref_sys%false_northing, &
943	.FALSE., 'crs' )
944	CALL get_attribute( id_mod, 'grid_mapping_name', &
945	coord_ref_sys%grid_mapping_name, &
946	.FALSE., 'crs' )
947	CALL get_attribute( id_mod, 'inverse_flattening', &
948	coord_ref_sys%inverse_flattening, &
949	.FALSE., 'crs' )
950	CALL get_attribute( id_mod, 'latitude_of_projection_origin', &
951	coord_ref_sys%latitude_of_projection_origin, &
952	.FALSE., 'crs' )
953	CALL get_attribute( id_mod, 'long_name', &
954	coord_ref_sys%long_name, &
955	.FALSE., 'crs' )
956	CALL get_attribute( id_mod, 'longitude_of_central_meridian', &
957	coord_ref_sys%longitude_of_central_meridian, &
958	.FALSE., 'crs' )
959	CALL get_attribute( id_mod, 'longitude_of_prime_meridian', &
960	coord_ref_sys%longitude_of_prime_meridian, &
961	.FALSE., 'crs' )
962	CALL get_attribute( id_mod, 'scale_factor_at_central_meridian', &
963	coord_ref_sys%scale_factor_at_central_meridian, &
964	.FALSE., 'crs' )
965	CALL get_attribute( id_mod, 'semi_major_axis', &
966	coord_ref_sys%semi_major_axis, &
967	.FALSE., 'crs' )
968	CALL get_attribute( id_mod, 'units', &
969	coord_ref_sys%units, &
970	.FALSE., 'crs' )
971	ELSE
972	!
973	!-- Calculate central meridian from origin_lon
974	coord_ref_sys%longitude_of_central_meridian = &
975	CEILING( input_file_atts%origin_lon / 6.0_wp ) * 6.0_wp - 3.0_wp
976	ENDIF
977	!
978	!-- Finally, close input file
979	CALL close_input_file( id_mod )
980	#endif
981	!
982	!-- Copy latitude, longitude, origin_z, rotation angle on init type
983	init_model%latitude = input_file_atts%origin_lat
984	init_model%longitude = input_file_atts%origin_lon
985	init_model%origin_time = input_file_atts%origin_time
986	init_model%origin_x = input_file_atts%origin_x
987	init_model%origin_y = input_file_atts%origin_y
988	init_model%origin_z = input_file_atts%origin_z
989	init_model%rotation_angle = input_file_atts%rotation_angle
990
991	!
992	!-- In case of nested runs, each model domain might have different longitude
993	!-- and latitude, which would result in different Coriolis parameters and
994	!-- sun-zenith angles. To avoid this, longitude and latitude in each model
995	!-- domain will be set to the values of the root model. Please note, this
996	!-- synchronization is required already here.
997	#if defined( __parallel )
998	CALL MPI_BCAST( init_model%latitude, 1, MPI_REAL, 0, &
999	MPI_COMM_WORLD, ierr )
1000	CALL MPI_BCAST( init_model%longitude, 1, MPI_REAL, 0, &
1001	MPI_COMM_WORLD, ierr )
1002	#endif
1003
1004	END SUBROUTINE netcdf_data_input_init
1005
1006	!------------------------------------------------------------------------------!
1007	! Description:
1008	! ------------
1009	!> Read an array of characters.
1010	!------------------------------------------------------------------------------!
1011	SUBROUTINE netcdf_data_input_var_char( val, search_string, id_mod )
1012
1013	IMPLICIT NONE
1014
1015	CHARACTER(LEN=*) :: search_string !< name of the variable
1016	CHARACTER(LEN=*), DIMENSION(:) :: val !< variable which should be read
1017
1018	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1019
1020	#if defined ( __netcdf )
1021	!
1022	!-- Read variable
1023	CALL get_variable( id_mod, search_string, val )
1024	#endif
1025
1026	END SUBROUTINE netcdf_data_input_var_char
1027
1028	!------------------------------------------------------------------------------!
1029	! Description:
1030	! ------------
1031	!> Read an 1D array of REAL values.
1032	!------------------------------------------------------------------------------!
1033	SUBROUTINE netcdf_data_input_var_real_1d( val, search_string, id_mod )
1034
1035	IMPLICIT NONE
1036
1037	CHARACTER(LEN=*) :: search_string !< name of the variable
1038
1039	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1040
1041	REAL(wp), DIMENSION(:) :: val !< variable which should be read
1042
1043	#if defined ( __netcdf )
1044	!
1045	!-- Read variable
1046	CALL get_variable( id_mod, search_string, val )
1047	#endif
1048
1049	END SUBROUTINE netcdf_data_input_var_real_1d
1050
1051	!------------------------------------------------------------------------------!
1052	! Description:
1053	! ------------
1054	!> Read an 1D array of REAL values.
1055	!------------------------------------------------------------------------------!
1056	SUBROUTINE netcdf_data_input_var_real_2d( val, search_string, &
1057	id_mod, d1s, d1e, d2s, d2e )
1058
1059	IMPLICIT NONE
1060
1061	CHARACTER(LEN=*) :: search_string !< name of the variable
1062
1063	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1064	INTEGER(iwp) :: d1e !< end index of first dimension to be read
1065	INTEGER(iwp) :: d2e !< end index of second dimension to be read
1066	INTEGER(iwp) :: d1s !< start index of first dimension to be read
1067	INTEGER(iwp) :: d2s !< start index of second dimension to be read
1068
1069	REAL(wp), DIMENSION(:,:) :: val !< variable which should be read
1070
1071	#if defined ( __netcdf )
1072	!
1073	!-- Read character variable
1074	CALL get_variable( id_mod, search_string, val, d1s, d1e, d2s, d2e )
1075	#endif
1076
1077	END SUBROUTINE netcdf_data_input_var_real_2d
1078
1079	!------------------------------------------------------------------------------!
1080	! Description:
1081	! ------------
1082	!> Read a global string attribute
1083	!------------------------------------------------------------------------------!
1084	SUBROUTINE netcdf_data_input_att_string( val, search_string, id_mod, &
1085	input_file, global, openclose, &
1086	variable_name )
1087
1088	IMPLICIT NONE
1089
1090	CHARACTER(LEN=*) :: search_string !< name of the attribue
1091	CHARACTER(LEN=*) :: val !< attribute
1092
1093	CHARACTER(LEN=*) :: input_file !< name of input file
1094	CHARACTER(LEN=*) :: openclose !< string indicating whether NetCDF needs to be opend or closed
1095	CHARACTER(LEN=*) :: variable_name !< string indicating whether NetCDF needs to be opend or closed
1096
1097	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1098
1099	LOGICAL :: global !< flag indicating a global or a variable's attribute
1100
1101	#if defined ( __netcdf )
1102	!
1103	!-- Open file in read-only mode if necessary
1104	IF ( openclose == 'open' ) THEN
1105	CALL open_read_file( TRIM( input_file ) // TRIM( coupling_char ), &
1106	id_mod )
1107	ENDIF
1108	!
1109	!-- Read global attribute
1110	IF ( global ) THEN
1111	CALL get_attribute( id_mod, search_string, val, global )
1112	!
1113	!-- Read variable attribute
1114	ELSE
1115	CALL get_attribute( id_mod, search_string, val, global, variable_name )
1116	ENDIF
1117	!
1118	!-- Close input file
1119	IF ( openclose == 'close' ) CALL close_input_file( id_mod )
1120	#endif
1121
1122	END SUBROUTINE netcdf_data_input_att_string
1123
1124	!------------------------------------------------------------------------------!
1125	! Description:
1126	! ------------
1127	!> Read a global integer attribute
1128	!------------------------------------------------------------------------------!
1129	SUBROUTINE netcdf_data_input_att_int( val, search_string, id_mod, &
1130	input_file, global, openclose, &
1131	variable_name )
1132
1133	IMPLICIT NONE
1134
1135	CHARACTER(LEN=*) :: search_string !< name of the attribue
1136
1137	CHARACTER(LEN=*) :: input_file !< name of input file
1138	CHARACTER(LEN=*) :: openclose !< string indicating whether NetCDF needs to be opend or closed
1139	CHARACTER(LEN=*) :: variable_name !< string indicating whether NetCDF needs to be opend or closed
1140
1141	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1142	INTEGER(iwp) :: val !< value of the attribute
1143
1144	LOGICAL :: global !< flag indicating a global or a variable's attribute
1145
1146	#if defined ( __netcdf )
1147	!
1148	!-- Open file in read-only mode
1149	IF ( openclose == 'open' ) THEN
1150	CALL open_read_file( TRIM( input_file ) // TRIM( coupling_char ), &
1151	id_mod )
1152	ENDIF
1153	!
1154	!-- Read global attribute
1155	IF ( global ) THEN
1156	CALL get_attribute( id_mod, search_string, val, global )
1157	!
1158	!-- Read variable attribute
1159	ELSE
1160	CALL get_attribute( id_mod, search_string, val, global, variable_name )
1161	ENDIF
1162	!
1163	!-- Finally, close input file
1164	IF ( openclose == 'close' ) CALL close_input_file( id_mod )
1165	#endif
1166
1167	END SUBROUTINE netcdf_data_input_att_int
1168
1169	!------------------------------------------------------------------------------!
1170	! Description:
1171	! ------------
1172	!> Read a global real attribute
1173	!------------------------------------------------------------------------------!
1174	SUBROUTINE netcdf_data_input_att_real( val, search_string, id_mod, &
1175	input_file, global, openclose, &
1176	variable_name )
1177
1178	IMPLICIT NONE
1179
1180	CHARACTER(LEN=*) :: search_string !< name of the attribue
1181
1182	CHARACTER(LEN=*) :: input_file !< name of input file
1183	CHARACTER(LEN=*) :: openclose !< string indicating whether NetCDF needs to be opend or closed
1184	CHARACTER(LEN=*) :: variable_name !< string indicating whether NetCDF needs to be opend or closed
1185
1186	INTEGER(iwp) :: id_mod !< NetCDF id of input file
1187
1188	LOGICAL :: global !< flag indicating a global or a variable's attribute
1189
1190	REAL(wp) :: val !< value of the attribute
1191
1192	#if defined ( __netcdf )
1193	!
1194	!-- Open file in read-only mode
1195	IF ( openclose == 'open' ) THEN
1196	CALL open_read_file( TRIM( input_file ) // TRIM( coupling_char ), &
1197	id_mod )
1198	ENDIF
1199	!
1200	!-- Read global attribute
1201	IF ( global ) THEN
1202	CALL get_attribute( id_mod, search_string, val, global )
1203	!
1204	!-- Read variable attribute
1205	ELSE
1206	CALL get_attribute( id_mod, search_string, val, global, variable_name )
1207	ENDIF
1208	!
1209	!-- Finally, close input file
1210	IF ( openclose == 'close' ) CALL close_input_file( id_mod )
1211	#endif
1212
1213	END SUBROUTINE netcdf_data_input_att_real
1214
1215	!------------------------------------------------------------------------------!
1216	! Description:
1217	! ------------
1218	!> Reads Chemistry NETCDF Input data, such as emission values, emission species, etc. .
1219	!------------------------------------------------------------------------------!
1220	SUBROUTINE netcdf_data_input_chemistry_data(emt_att,emt)
1221
1222	USE chem_modules, &
1223	ONLY: do_emis, mode_emis, time_fac_type, &
1224	surface_csflux_name
1225
1226	USE control_parameters, &
1227	ONLY: message_string
1228
1229	USE indices, &
1230	ONLY: nz, nx, ny, nxl, nxr, nys, nyn, nzb, nzt
1231
1232	IMPLICIT NONE
1233
1234	TYPE(chem_emis_att_type), INTENT(INOUT) :: emt_att
1235	TYPE(chem_emis_val_type), ALLOCATABLE, DIMENSION(:), INTENT(INOUT) :: emt
1236
1237	CHARACTER (LEN=80) :: units='' !< units of chemistry inputs
1238
1239	INTEGER(iwp) :: ispec !< index for number of emission species in input
1240
1241	INTEGER(iwp), ALLOCATABLE, DIMENSION(:) :: dum_var !< value of variable read from netcdf input
1242	INTEGER(iwp) :: errno !< error number NF90_???? function
1243	INTEGER(iwp) :: id_var !< variable id
1244	! INTEGER(iwp) :: id_emis !< NetCDF id of input file
1245	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
1246	INTEGER(iwp) :: len_dims,len_dims_2 !< Length of dimensions
1247
1248	INTEGER(iwp) :: max_string_length=25 !< Variable for the maximum length of a string
1249
1250	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names !< Name of Variables
1251
1252	REAL(wp), ALLOCATABLE, DIMENSION(:,:,:) :: dum_var_3d !< variable for storing temporary data of 3-dimensional
1253	! variables read from netcdf for chemistry emissions
1254
1255	REAL(wp), ALLOCATABLE, DIMENSION(:,:,:,:) :: dum_var_4d !< variable for storing temporary data of 5-dimensional
1256	!< variables read from netcdf for chemistry emissions
1257	!--
1258	!> Start the processing of the data
1259	CALL location_message( 'starting allocation of chemistry emissions arrays', .FALSE. )
1260
1261	!> Parameterized mode of the emissions
1262	IF (TRIM(mode_emis)=="PARAMETERIZED" .OR. TRIM(mode_emis)=="parameterized") THEN
1263
1264	ispec=1
1265	emt_att%nspec=0
1266
1267	!number of species
1268	DO WHILE (TRIM( surface_csflux_name( ispec ) ) /= 'novalue' )
1269
1270	emt_att%nspec=emt_att%nspec+1
1271	ispec=ispec+1
1272
1273	ENDDO
1274
1275	!-- allocate emission values data type arrays
1276	ALLOCATE(emt(emt_att%nspec))
1277
1278	!-- Read EMISSION SPECIES NAMES
1279
1280	!Assign values
1281	ALLOCATE(emt_att%species_name(emt_att%nspec))
1282
1283	DO ispec=1,emt_att%nspec
1284	emt_att%species_name(ispec) = TRIM(surface_csflux_name(ispec))
1285	ENDDO
1286
1287
1288	!> DEFAULT AND PRE-PROCESSED MODE
1289	ELSE
1290
1291	#if defined ( __netcdf )
1292	IF ( .NOT. input_pids_chem ) RETURN
1293
1294	!-- Open file in read-only mode
1295	CALL open_read_file( TRIM( input_file_chem ) // &
1296	TRIM( coupling_char ), id_emis )
1297	!-- inquire number of variables
1298	CALL inquire_num_variables( id_emis, num_vars )
1299
1300	!-- Get General Dimension Lengths: only number of species and number of categories.
1301	! the other dimensions depend on the mode of the emissions or on the presence of specific components
1302	!nspecies
1303	CALL netcdf_data_input_get_dimension_length( id_emis, emt_att%nspec, 'nspecies' )
1304
1305
1306	!-- Allocate emission values data type arrays
1307	ALLOCATE(emt(1:emt_att%nspec))
1308
1309
1310	!-- Read EMISSION SPECIES NAMES
1311	!Allocate Arrays
1312	ALLOCATE(emt_att%species_name(emt_att%nspec))
1313
1314	!Call get Variable
1315	CALL get_variable( id_emis, 'emission_name', string_values, emt_att%nspec )
1316	emt_att%species_name=string_values
1317	! If allocated, Deallocate var_string, an array only used for reading-in strings
1318	IF (ALLOCATED(string_values)) DEALLOCATE(string_values)
1319
1320	!-- Read EMISSION SPECIES INDEX
1321	!Allocate Arrays
1322	ALLOCATE(emt_att%species_index(emt_att%nspec))
1323	!Call get Variable
1324	CALL get_variable( id_emis, 'emission_index', emt_att%species_index )
1325
1326
1327	!-- Now the routine has to distinguish between DEFAULT and PRE-PROCESSED chemistry emission modes
1328
1329	IF (TRIM(mode_emis)=="DEFAULT" .OR. TRIM(mode_emis)=="default") THEN
1330
1331	!number of categories
1332	CALL netcdf_data_input_get_dimension_length( id_emis, emt_att%ncat, 'ncat' )
1333
1334	!-- Read EMISSION CATEGORIES INDEX
1335	!Allocate Arrays
1336	ALLOCATE(emt_att%cat_index(emt_att%ncat))
1337	!Call get Variable
1338	CALL get_variable( id_emis, 'emission_cat_index', emt_att%cat_index )
1339
1340
1341	DO ispec=1,emt_att%nspec
1342	!-- EMISSION_VOC_NAME (1-DIMENSIONAL)
1343	IF (TRIM(emt_att%species_name(ispec))=="VOC" .OR. TRIM(emt_att%species_name(ispec))=="voc") THEN
1344	!Allocate Array
1345	CALL netcdf_data_input_get_dimension_length( id_emis, emt_att%nvoc, 'nvoc' )
1346	ALLOCATE(emt_att%voc_name(1:emt_att%nvoc))
1347	!Read-in Variable
1348	CALL get_variable( id_emis,"emission_voc_name",string_values, emt_att%nvoc)
1349	emt_att%voc_name=string_values
1350	IF (ALLOCATED(string_values)) DEALLOCATE(string_values)
1351
1352	!-- COMPOSITION VOC (2-DIMENSIONAL)
1353	!Allocate Array
1354	ALLOCATE(emt_att%voc_comp(1:emt_att%ncat,1:emt_att%nvoc))
1355	!Read-in Variable
1356	! CALL get_variable(id_emis,"composition_voc",emt%voc_comp,1,1,emt%ncat,emt%nvoc)
1357	CALL get_variable(id_emis,"composition_voc",emt_att%voc_comp,1,emt_att%ncat,1,emt_att%nvoc)
1358	ENDIF
1359
1360	!-- EMISSION_PM_NAME (1-DIMENSIONAL)
1361	IF (TRIM(emt_att%species_name(ispec))=="PM" .OR. TRIM(emt_att%species_name(ispec))=="pm") THEN
1362	CALL netcdf_data_input_get_dimension_length( id_emis, emt_att%npm, 'npm' )
1363	ALLOCATE(emt_att%pm_name(1:emt_att%npm))
1364	!Read-in Variable
1365	CALL get_variable( id_emis,"pm_name",string_values, emt_att%npm)
1366	emt_att%pm_name=string_values
1367	IF (ALLOCATED(string_values)) DEALLOCATE(string_values)
1368
1369	!-- COMPOSITION PM (3-DIMENSIONAL)
1370	!Allocate
1371	len_dims=3 !> number of PMs: PM1, PM2.5 and PM10
1372	ALLOCATE(emt_att%pm_comp(1:emt_att%ncat,1:emt_att%npm,1:len_dims))
1373	!Read-in Variable
1374	CALL get_variable(id_emis,"composition_pm",emt_att%pm_comp,1,emt_att%ncat,1,emt_att%npm,1,len_dims)
1375	ENDIF
1376
1377	!-- COMPOSITION_NOX (2-DIMENSIONAL)
1378	IF (TRIM(emt_att%species_name(ispec))=="NOx" .OR. TRIM(emt_att%species_name(ispec))=="nox") THEN
1379	!Allocate array
1380	ALLOCATE(emt_att%nox_comp(1:emt_att%ncat,1:emt_att%nnox))
1381	!Read-in Variable
1382	CALL get_variable(id_emis,"composition_nox",emt_att%nox_comp,1,emt_att%ncat,1,emt_att%nnox)
1383	ENDIF
1384
1385	!-- COMPOSITION-SOX (2-DIMENSIONAL)
1386	IF (TRIM(emt_att%species_name(ispec))=="SOx" .OR. TRIM(emt_att%species_name(ispec))=="sox") THEN
1387	ALLOCATE(emt_att%sox_comp(1:emt_att%ncat,1:emt_att%nsox))
1388	!Read-in Variable
1389	CALL get_variable(id_emis,"composition_sox",emt_att%sox_comp,1,emt_att%ncat,1,emt_att%nsox)
1390	ENDIF
1391	ENDDO !>ispec
1392
1393	!-- For reading the emission time factors, the distinction between HOUR and MDH data is necessary
1394
1395	!-- EMISSION_TIME_SCALING_FACTORS
1396	!-- HOUR
1397	IF (TRIM(time_fac_type)=="HOUR" .OR. TRIM(time_fac_type)=="hour") THEN
1398	!-- Allocate Array
1399	CALL netcdf_data_input_get_dimension_length( id_emis, emt_att%nhoursyear, 'nhoursyear' )
1400	ALLOCATE(emt_att%hourly_emis_time_factor(1:emt_att%ncat,1:emt_att%nhoursyear))
1401	!Read-in Variable
1402	CALL get_variable(id_emis,"emission_time_factors",emt_att%hourly_emis_time_factor,1, &
1403	emt_att%ncat,1,emt_att%nhoursyear)
1404
1405	!-- MDH
1406	ELSE IF (TRIM(time_fac_type) == "MDH" .OR. TRIM(time_fac_type) == "mdh") THEN
1407	!-- Allocate Array
1408	CALL netcdf_data_input_get_dimension_length( id_emis, emt_att%nmonthdayhour, 'nmonthdayhour' )
1409	ALLOCATE(emt_att%mdh_emis_time_factor(1:emt_att%ncat,1:emt_att%nmonthdayhour))
1410	!-- Read-in Variable
1411	CALL get_variable(id_emis,"emission_time_factors",emt_att%mdh_emis_time_factor,1, &
1412	emt_att%ncat,1,emt_att%nmonthdayhour)
1413
1414	ELSE
1415
1416	message_string = 'We are in the DEFAULT chemistry emissions mode: ' // &
1417	' !no time-factor type specified!' // &
1418	'Please, specify the value of time_fac_type:' // &
1419	' either "MDH" or "HOUR"'
1420	CALL message( 'netcdf_data_input_chemistry_data', 'CM0200', 2, 2, 0, 6, 0 )
1421
1422
1423	ENDIF
1424
1425	!-- Finally read-in the emission values and their units (DEFAULT mode)
1426
1427	DO ispec=1,emt_att%nspec
1428
1429	IF ( .NOT. ALLOCATED( emt(ispec)%default_emission_data ) ) &
1430	ALLOCATE(emt(ispec)%default_emission_data(1:emt_att%ncat,1:ny+1,1:nx+1))
1431
1432	ALLOCATE(dum_var_3d(1:emt_att%ncat,nys+1:nyn+1,nxl+1:nxr+1))
1433
1434	CALL get_variable(id_emis,"emission_values",dum_var_3d,ispec,1,emt_att%ncat,nys,nyn,nxl,nxr)
1435
1436	emt(ispec)%default_emission_data(:,nys+1:nyn+1,nxl+1:nxr+1) = &
1437	dum_var_3d(1:emt_att%ncat,nys+1:nyn+1,nxl+1:nxr+1)
1438
1439	DEALLOCATE (dum_var_3d)
1440
1441	ENDDO
1442
1443	!-- UNITS
1444	CALL get_attribute(id_emis,"units",emt_att%units,.FALSE.,"emission_values")
1445
1446
1447	!-- PRE-PROCESSED MODE --
1448
1449	ELSE IF (TRIM(mode_emis)=="PRE-PROCESSED" .OR. TRIM(mode_emis)=="pre-processed") THEN
1450	!-- In the PRE-PROCESSED mode, only the VOC names, the VOC_composition, the emission values and their units remain to be read at this point
1451
1452	DO ispec=1,emt_att%nspec
1453
1454	!-- EMISSION_VOC_NAME (1-DIMENSIONAL)
1455	IF (TRIM(emt_att%species_name(ispec))=="VOC" .OR. TRIM(emt_att%species_name(ispec))=="voc") THEN
1456	!Allocate Array
1457	CALL netcdf_data_input_get_dimension_length( id_emis, emt_att%nvoc, 'nvoc' )
1458	ALLOCATE(emt_att%voc_name(1:emt_att%nvoc))
1459	!Read-in Variable
1460	CALL get_variable( id_emis,"emission_voc_name",string_values, emt_att%nvoc)
1461	emt_att%voc_name=string_values
1462	IF (ALLOCATED(string_values)) DEALLOCATE(string_values)
1463
1464	!-- COMPOSITION VOC (2-DIMENSIONAL)
1465	!Allocate Array
1466	ALLOCATE(emt_att%voc_comp(1:emt_att%ncat,1:emt_att%nvoc))
1467	!Read-in Variable
1468	CALL get_variable(id_emis,"composition_voc",emt_att%voc_comp,1,emt_att%ncat,1,emt_att%nvoc)
1469	ENDIF
1470
1471	ENDDO !> ispec
1472
1473	!-- EMISSION_VALUES (4-DIMENSIONAL)
1474	!Calculate temporal dimension length
1475	CALL netcdf_data_input_get_dimension_length( id_emis, emt_att%dt_emission, 'time' )
1476
1477
1478	DO ispec=1,emt_att%nspec
1479
1480	!Allocation for the entire domain has to be done only for the first processor between all the subdomains
1481	IF ( .NOT. ALLOCATED( emt(ispec)%preproc_emission_data ) ) &
1482	ALLOCATE(emt(ispec)%preproc_emission_data(emt_att%dt_emission,1,1:ny+1,1:nx+1))
1483
1484	!> allocate variable where to pass emission values read from netcdf
1485	ALLOCATE(dum_var_4d(1:emt_att%dt_emission,1,nys+1:nyn+1,nxl+1:nxr+1))
1486
1487	!Read-in Variable
1488	CALL get_variable(id_emis,"emission_values",dum_var_4d,ispec,1,emt_att%dt_emission,1,1,nys,nyn,nxl,nxr)
1489
1490
1491	emt(ispec)%preproc_emission_data(:,1,nys+1:nyn+1,nxl+1:nxr+1) = &
1492	dum_var_4d(1:emt_att%dt_emission,1,nys+1:nyn+1,nxl+1:nxr+1)
1493
1494	DEALLOCATE ( dum_var_4d )
1495
1496	ENDDO
1497
1498	!-- UNITS
1499	CALL get_attribute(id_emis,"units",emt_att%units,.FALSE.,"emission_values")
1500
1501	ENDIF
1502
1503	CALL close_input_file( id_emis )
1504
1505	#endif
1506	ENDIF
1507
1508	END SUBROUTINE netcdf_data_input_chemistry_data
1509
1510	!------------------------------------------------------------------------------!
1511	! Description:
1512	! ------------
1513	!> Reads surface classification data, such as vegetation and soil type, etc. .
1514	!------------------------------------------------------------------------------!
1515	SUBROUTINE netcdf_data_input_surface_data
1516
1517	USE control_parameters, &
1518	ONLY: bc_lr_cyc, bc_ns_cyc, land_surface, plant_canopy, &
1519	urban_surface
1520
1521	USE indices, &
1522	ONLY: nbgp, nx, nxl, nxlg, nxr, nxrg, ny, nyn, nyng, nys, nysg
1523
1524
1525	IMPLICIT NONE
1526
1527	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names !< variable names in static input file
1528
1529	INTEGER(iwp) :: id_surf !< NetCDF id of input file
1530	INTEGER(iwp) :: k !< running index along z-direction
1531	INTEGER(iwp) :: k2 !< running index
1532	INTEGER(iwp) :: num_vars !< number of variables in input file
1533	INTEGER(iwp) :: nz_soil !< number of soil layers in file
1534
1535	INTEGER(iwp), DIMENSION(nysg:nyng,nxlg:nxrg) :: var_exchange_int !< dummy variables used to exchange 32-bit Integer arrays
1536	INTEGER(iwp), DIMENSION(:,:,:), ALLOCATABLE :: var_dum_int_3d !< dummy variables used to exchange real arrays
1537
1538	REAL(wp), DIMENSION(nysg:nyng,nxlg:nxrg) :: var_exchange_real !< dummy variables used to exchange real arrays
1539
1540	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: var_dum_real_3d !< dummy variables used to exchange real arrays
1541	REAL(wp), DIMENSION(:,:,:,:), ALLOCATABLE :: var_dum_real_4d !< dummy variables used to exchange real arrays
1542
1543	!
1544	!-- If not static input file is available, skip this routine
1545	IF ( .NOT. input_pids_static ) RETURN
1546	!
1547	!-- Measure CPU time
1548	CALL cpu_log( log_point_s(82), 'NetCDF input', 'start' )
1549	!
1550	!-- Read plant canopy variables.
1551	IF ( plant_canopy ) THEN
1552	#if defined ( __netcdf )
1553	!
1554	!-- Open file in read-only mode
1555	CALL open_read_file( TRIM( input_file_static ) // &
1556	TRIM( coupling_char ) , id_surf )
1557	!
1558	!-- At first, inquire all variable names.
1559	!-- This will be used to check whether an optional input variable
1560	!-- exist or not.
1561	CALL inquire_num_variables( id_surf, num_vars )
1562
1563	ALLOCATE( var_names(1:num_vars) )
1564	CALL inquire_variable_names( id_surf, var_names )
1565
1566	!
1567	!-- Read leaf area density - resolved vegetation
1568	IF ( check_existence( var_names, 'lad' ) ) THEN
1569	leaf_area_density_f%from_file = .TRUE.
1570	CALL get_attribute( id_surf, char_fill, &
1571	leaf_area_density_f%fill, &
1572	.FALSE., 'lad' )
1573	!
1574	!-- Inquire number of vertical vegetation layer
1575	CALL netcdf_data_input_get_dimension_length( id_surf, &
1576	leaf_area_density_f%nz, &
1577	'zlad' )
1578	!
1579	!-- Allocate variable for leaf-area density
1580	ALLOCATE( leaf_area_density_f%var( 0:leaf_area_density_f%nz-1, &
1581	nys:nyn,nxl:nxr) )
1582
1583	CALL get_variable( id_surf, 'lad', leaf_area_density_f%var, &
1584	nxl, nxr, nys, nyn, &
1585	0, leaf_area_density_f%nz-1 )
1586
1587	ELSE
1588	leaf_area_density_f%from_file = .FALSE.
1589	ENDIF
1590
1591	!
1592	!-- Read basal area density - resolved vegetation
1593	IF ( check_existence( var_names, 'bad' ) ) THEN
1594	basal_area_density_f%from_file = .TRUE.
1595	CALL get_attribute( id_surf, char_fill, &
1596	basal_area_density_f%fill, &
1597	.FALSE., 'bad' )
1598	!
1599	!-- Inquire number of vertical vegetation layer
1600	CALL netcdf_data_input_get_dimension_length( id_surf, &
1601	basal_area_density_f%nz, &
1602	'zlad' )
1603	!
1604	!-- Allocate variable
1605	ALLOCATE( basal_area_density_f%var(0:basal_area_density_f%nz-1, &
1606	nys:nyn,nxl:nxr) )
1607
1608	CALL get_variable( id_surf, 'bad', basal_area_density_f%var, &
1609	nxl, nxr, nys, nyn, &
1610	0, basal_area_density_f%nz-1 )
1611	ELSE
1612	basal_area_density_f%from_file = .FALSE.
1613	ENDIF
1614
1615	!
1616	!-- Read root area density - resolved vegetation
1617	IF ( check_existence( var_names, 'root_area_dens_r' ) ) THEN
1618	root_area_density_lad_f%from_file = .TRUE.
1619	CALL get_attribute( id_surf, char_fill, &
1620	root_area_density_lad_f%fill, &
1621	.FALSE., 'root_area_dens_r' )
1622	!
1623	!-- Inquire number of vertical soil layers
1624	CALL netcdf_data_input_get_dimension_length( id_surf, &
1625	root_area_density_lad_f%nz, &
1626	'zsoil' )
1627	!
1628	!-- Allocate variable
1629	ALLOCATE( root_area_density_lad_f%var &
1630	(0:root_area_density_lad_f%nz-1, &
1631	nys:nyn,nxl:nxr) )
1632
1633	CALL get_variable( id_surf, 'root_area_dens_r', &
1634	root_area_density_lad_f%var, &
1635	nxl, nxr, nys, nyn, &
1636	0, root_area_density_lad_f%nz-1 )
1637	ELSE
1638	root_area_density_lad_f%from_file = .FALSE.
1639	ENDIF
1640	!
1641	!-- Finally, close input file
1642	CALL close_input_file( id_surf )
1643	#endif
1644	ENDIF
1645	!
1646	!-- Deallocate variable list. Will be re-allocated in case further
1647	!-- variables are read from file.
1648	IF ( ALLOCATED( var_names ) ) DEALLOCATE( var_names )
1649	!
1650	!-- Skip the following if no land-surface or urban-surface module are
1651	!-- applied. This case, no one of the following variables is used anyway.
1652	IF ( .NOT. land_surface .AND. .NOT. urban_surface ) RETURN
1653	!
1654	!-- Initialize dummy arrays used for ghost-point exchange
1655	var_exchange_int = 0
1656	var_exchange_real = 0.0_wp
1657
1658	#if defined ( __netcdf )
1659	!
1660	!-- Open file in read-only mode
1661	CALL open_read_file( TRIM( input_file_static ) // &
1662	TRIM( coupling_char ) , id_surf )
1663	!
1664	!-- Inquire all variable names.
1665	!-- This will be used to check whether an optional input variable exist
1666	!-- or not.
1667	CALL inquire_num_variables( id_surf, num_vars )
1668
1669	ALLOCATE( var_names(1:num_vars) )
1670	CALL inquire_variable_names( id_surf, var_names )
1671	!
1672	!-- Read vegetation type and required attributes
1673	IF ( check_existence( var_names, 'vegetation_type' ) ) THEN
1674	vegetation_type_f%from_file = .TRUE.
1675	CALL get_attribute( id_surf, char_fill, &
1676	vegetation_type_f%fill, &
1677	.FALSE., 'vegetation_type' )
1678
1679	ALLOCATE ( vegetation_type_f%var(nys:nyn,nxl:nxr) )
1680
1681	CALL get_variable( id_surf, 'vegetation_type', &
1682	vegetation_type_f%var, nxl, nxr, nys, nyn )
1683	ELSE
1684	vegetation_type_f%from_file = .FALSE.
1685	ENDIF
1686
1687	!
1688	!-- Read soil type and required attributes
1689	IF ( check_existence( var_names, 'soil_type' ) ) THEN
1690	soil_type_f%from_file = .TRUE.
1691	!
1692	!-- Note, lod is currently not on file; skip for the moment
1693	! CALL get_attribute( id_surf, char_lod, &
1694	! soil_type_f%lod, &
1695	! .FALSE., 'soil_type' )
1696	CALL get_attribute( id_surf, char_fill, &
1697	soil_type_f%fill, &
1698	.FALSE., 'soil_type' )
1699
1700	IF ( soil_type_f%lod == 1 ) THEN
1701
1702	ALLOCATE ( soil_type_f%var_2d(nys:nyn,nxl:nxr) )
1703
1704	CALL get_variable( id_surf, 'soil_type', soil_type_f%var_2d, &
1705	nxl, nxr, nys, nyn )
1706
1707	ELSEIF ( soil_type_f%lod == 2 ) THEN
1708	!
1709	!-- Obtain number of soil layers from file.
1710	CALL netcdf_data_input_get_dimension_length( id_surf, nz_soil, &
1711	'zsoil' )
1712
1713	ALLOCATE ( soil_type_f%var_3d(0:nz_soil,nys:nyn,nxl:nxr) )
1714
1715	CALL get_variable( id_surf, 'soil_type', soil_type_f%var_3d, &
1716	nxl, nxr, nys, nyn, 0, nz_soil )
1717
1718	ENDIF
1719	ELSE
1720	soil_type_f%from_file = .FALSE.
1721	ENDIF
1722
1723	!
1724	!-- Read pavement type and required attributes
1725	IF ( check_existence( var_names, 'pavement_type' ) ) THEN
1726	pavement_type_f%from_file = .TRUE.
1727	CALL get_attribute( id_surf, char_fill, &
1728	pavement_type_f%fill, .FALSE., &
1729	'pavement_type' )
1730
1731	ALLOCATE ( pavement_type_f%var(nys:nyn,nxl:nxr) )
1732
1733	CALL get_variable( id_surf, 'pavement_type', pavement_type_f%var, &
1734	nxl, nxr, nys, nyn )
1735	ELSE
1736	pavement_type_f%from_file = .FALSE.
1737	ENDIF
1738
1739	!
1740	!-- Read water type and required attributes
1741	IF ( check_existence( var_names, 'water_type' ) ) THEN
1742	water_type_f%from_file = .TRUE.
1743	CALL get_attribute( id_surf, char_fill, water_type_f%fill, &
1744	.FALSE., 'water_type' )
1745
1746	ALLOCATE ( water_type_f%var(nys:nyn,nxl:nxr) )
1747
1748	CALL get_variable( id_surf, 'water_type', water_type_f%var, &
1749	nxl, nxr, nys, nyn )
1750
1751	ELSE
1752	water_type_f%from_file = .FALSE.
1753	ENDIF
1754	!
1755	!-- Read relative surface fractions of vegetation, pavement and water.
1756	IF ( check_existence( var_names, 'surface_fraction' ) ) THEN
1757	surface_fraction_f%from_file = .TRUE.
1758	CALL get_attribute( id_surf, char_fill, &
1759	surface_fraction_f%fill, &
1760	.FALSE., 'surface_fraction' )
1761	!
1762	!-- Inquire number of surface fractions
1763	CALL netcdf_data_input_get_dimension_length( id_surf, &
1764	surface_fraction_f%nf, &
1765	'nsurface_fraction' )
1766	!
1767	!-- Allocate dimension array and input array for surface fractions
1768	ALLOCATE( surface_fraction_f%nfracs(0:surface_fraction_f%nf-1) )
1769	ALLOCATE( surface_fraction_f%frac(0:surface_fraction_f%nf-1, &
1770	nys:nyn,nxl:nxr) )
1771	!
1772	!-- Get dimension of surface fractions
1773	CALL get_variable( id_surf, 'nsurface_fraction', &
1774	surface_fraction_f%nfracs )
1775	!
1776	!-- Read surface fractions
1777	CALL get_variable( id_surf, 'surface_fraction', &
1778	surface_fraction_f%frac, nxl, nxr, nys, nyn, &
1779	0, surface_fraction_f%nf-1 )
1780	ELSE
1781	surface_fraction_f%from_file = .FALSE.
1782	ENDIF
1783	!
1784	!-- Read building parameters and related information
1785	IF ( check_existence( var_names, 'building_pars' ) ) THEN
1786	building_pars_f%from_file = .TRUE.
1787	CALL get_attribute( id_surf, char_fill, &
1788	building_pars_f%fill, &
1789	.FALSE., 'building_pars' )
1790	!
1791	!-- Inquire number of building parameters
1792	CALL netcdf_data_input_get_dimension_length( id_surf, &
1793	building_pars_f%np, &
1794	'nbuilding_pars' )
1795	!
1796	!-- Allocate dimension array and input array for building parameters
1797	ALLOCATE( building_pars_f%pars(0:building_pars_f%np-1) )
1798	ALLOCATE( building_pars_f%pars_xy(0:building_pars_f%np-1, &
1799	nys:nyn,nxl:nxr) )
1800	!
1801	!-- Get dimension of building parameters
1802	CALL get_variable( id_surf, 'nbuilding_pars', &
1803	building_pars_f%pars )
1804	!
1805	!-- Read building_pars
1806	CALL get_variable( id_surf, 'building_pars', &
1807	building_pars_f%pars_xy, nxl, nxr, nys, nyn, &
1808	0, building_pars_f%np-1 )
1809	ELSE
1810	building_pars_f%from_file = .FALSE.
1811	ENDIF
1812
1813	!
1814	!-- Read albedo type and required attributes
1815	IF ( check_existence( var_names, 'albedo_type' ) ) THEN
1816	albedo_type_f%from_file = .TRUE.
1817	CALL get_attribute( id_surf, char_fill, albedo_type_f%fill, &
1818	.FALSE., 'albedo_type' )
1819
1820	ALLOCATE ( albedo_type_f%var(nys:nyn,nxl:nxr) )
1821
1822	CALL get_variable( id_surf, 'albedo_type', albedo_type_f%var, &
1823	nxl, nxr, nys, nyn )
1824	ELSE
1825	albedo_type_f%from_file = .FALSE.
1826	ENDIF
1827	!
1828	!-- Read albedo parameters and related information
1829	IF ( check_existence( var_names, 'albedo_pars' ) ) THEN
1830	albedo_pars_f%from_file = .TRUE.
1831	CALL get_attribute( id_surf, char_fill, albedo_pars_f%fill, &
1832	.FALSE., 'albedo_pars' )
1833	!
1834	!-- Inquire number of albedo parameters
1835	CALL netcdf_data_input_get_dimension_length( id_surf, &
1836	albedo_pars_f%np, &
1837	'nalbedo_pars' )
1838	!
1839	!-- Allocate dimension array and input array for albedo parameters
1840	ALLOCATE( albedo_pars_f%pars(0:albedo_pars_f%np-1) )
1841	ALLOCATE( albedo_pars_f%pars_xy(0:albedo_pars_f%np-1, &
1842	nys:nyn,nxl:nxr) )
1843	!
1844	!-- Get dimension of albedo parameters
1845	CALL get_variable( id_surf, 'nalbedo_pars', albedo_pars_f%pars )
1846
1847	CALL get_variable( id_surf, 'albedo_pars', albedo_pars_f%pars_xy, &
1848	nxl, nxr, nys, nyn, &
1849	0, albedo_pars_f%np-1 )
1850	ELSE
1851	albedo_pars_f%from_file = .FALSE.
1852	ENDIF
1853
1854	!
1855	!-- Read pavement parameters and related information
1856	IF ( check_existence( var_names, 'pavement_pars' ) ) THEN
1857	pavement_pars_f%from_file = .TRUE.
1858	CALL get_attribute( id_surf, char_fill, &
1859	pavement_pars_f%fill, &
1860	.FALSE., 'pavement_pars' )
1861	!
1862	!-- Inquire number of pavement parameters
1863	CALL netcdf_data_input_get_dimension_length( id_surf, &
1864	pavement_pars_f%np, &
1865	'npavement_pars' )
1866	!
1867	!-- Allocate dimension array and input array for pavement parameters
1868	ALLOCATE( pavement_pars_f%pars(0:pavement_pars_f%np-1) )
1869	ALLOCATE( pavement_pars_f%pars_xy(0:pavement_pars_f%np-1, &
1870	nys:nyn,nxl:nxr) )
1871	!
1872	!-- Get dimension of pavement parameters
1873	CALL get_variable( id_surf, 'npavement_pars', pavement_pars_f%pars )
1874
1875	CALL get_variable( id_surf, 'pavement_pars', pavement_pars_f%pars_xy,&
1876	nxl, nxr, nys, nyn, &
1877	0, pavement_pars_f%np-1 )
1878	ELSE
1879	pavement_pars_f%from_file = .FALSE.
1880	ENDIF
1881
1882	!
1883	!-- Read pavement subsurface parameters and related information
1884	IF ( check_existence( var_names, 'pavement_subsurface_pars' ) ) &
1885	THEN
1886	pavement_subsurface_pars_f%from_file = .TRUE.
1887	CALL get_attribute( id_surf, char_fill, &
1888	pavement_subsurface_pars_f%fill, &
1889	.FALSE., 'pavement_subsurface_pars' )
1890	!
1891	!-- Inquire number of parameters
1892	CALL netcdf_data_input_get_dimension_length( id_surf, &
1893	pavement_subsurface_pars_f%np, &
1894	'npavement_subsurface_pars' )
1895	!
1896	!-- Inquire number of soil layers
1897	CALL netcdf_data_input_get_dimension_length( id_surf, &
1898	pavement_subsurface_pars_f%nz, &
1899	'zsoil' )
1900	!
1901	!-- Allocate dimension array and input array for pavement parameters
1902	ALLOCATE( pavement_subsurface_pars_f%pars &
1903	(0:pavement_subsurface_pars_f%np-1) )
1904	ALLOCATE( pavement_subsurface_pars_f%pars_xyz &
1905	(0:pavement_subsurface_pars_f%np-1, &
1906	0:pavement_subsurface_pars_f%nz-1, &
1907	nys:nyn,nxl:nxr) )
1908	!
1909	!-- Get dimension of pavement parameters
1910	CALL get_variable( id_surf, 'npavement_subsurface_pars', &
1911	pavement_subsurface_pars_f%pars )
1912
1913	CALL get_variable( id_surf, 'pavement_subsurface_pars', &
1914	pavement_subsurface_pars_f%pars_xyz, &
1915	nxl, nxr, nys, nyn, &
1916	0, pavement_subsurface_pars_f%nz-1, &
1917	0, pavement_subsurface_pars_f%np-1 )
1918	ELSE
1919	pavement_subsurface_pars_f%from_file = .FALSE.
1920	ENDIF
1921
1922
1923	!
1924	!-- Read vegetation parameters and related information
1925	IF ( check_existence( var_names, 'vegetation_pars' ) ) THEN
1926	vegetation_pars_f%from_file = .TRUE.
1927	CALL get_attribute( id_surf, char_fill, &
1928	vegetation_pars_f%fill, &
1929	.FALSE., 'vegetation_pars' )
1930	!
1931	!-- Inquire number of vegetation parameters
1932	CALL netcdf_data_input_get_dimension_length( id_surf, &
1933	vegetation_pars_f%np, &
1934	'nvegetation_pars' )
1935	!
1936	!-- Allocate dimension array and input array for surface fractions
1937	ALLOCATE( vegetation_pars_f%pars(0:vegetation_pars_f%np-1) )
1938	ALLOCATE( vegetation_pars_f%pars_xy(0:vegetation_pars_f%np-1, &
1939	nys:nyn,nxl:nxr) )
1940	!
1941	!-- Get dimension of the parameters
1942	CALL get_variable( id_surf, 'nvegetation_pars', &
1943	vegetation_pars_f%pars )
1944
1945	CALL get_variable( id_surf, 'vegetation_pars', &
1946	vegetation_pars_f%pars_xy, nxl, nxr, nys, nyn, &
1947	0, vegetation_pars_f%np-1 )
1948	ELSE
1949	vegetation_pars_f%from_file = .FALSE.
1950	ENDIF
1951
1952	!
1953	!-- Read root parameters/distribution and related information
1954	IF ( check_existence( var_names, 'soil_pars' ) ) THEN
1955	soil_pars_f%from_file = .TRUE.
1956	CALL get_attribute( id_surf, char_fill, &
1957	soil_pars_f%fill, &
1958	.FALSE., 'soil_pars' )
1959
1960	CALL get_attribute( id_surf, char_lod, &
1961	soil_pars_f%lod, &
1962	.FALSE., 'soil_pars' )
1963
1964	!
1965	!-- Inquire number of soil parameters
1966	CALL netcdf_data_input_get_dimension_length( id_surf, &
1967	soil_pars_f%np, &
1968	'nsoil_pars' )
1969	!
1970	!-- Read parameters array
1971	ALLOCATE( soil_pars_f%pars(0:soil_pars_f%np-1) )
1972	CALL get_variable( id_surf, 'nsoil_pars', soil_pars_f%pars )
1973
1974	!
1975	!-- In case of level of detail 2, also inquire number of vertical
1976	!-- soil layers, allocate memory and read the respective dimension
1977	IF ( soil_pars_f%lod == 2 ) THEN
1978	CALL netcdf_data_input_get_dimension_length( id_surf, &
1979	soil_pars_f%nz, &
1980	'zsoil' )
1981
1982	ALLOCATE( soil_pars_f%layers(0:soil_pars_f%nz-1) )
1983	CALL get_variable( id_surf, 'zsoil', soil_pars_f%layers )
1984
1985	ENDIF
1986
1987	!
1988	!-- Read soil parameters, depending on level of detail
1989	IF ( soil_pars_f%lod == 1 ) THEN
1990	ALLOCATE( soil_pars_f%pars_xy(0:soil_pars_f%np-1, &
1991	nys:nyn,nxl:nxr) )
1992
1993	CALL get_variable( id_surf, 'soil_pars', soil_pars_f%pars_xy, &
1994	nxl, nxr, nys, nyn, 0, soil_pars_f%np-1 )
1995
1996	ELSEIF ( soil_pars_f%lod == 2 ) THEN
1997	ALLOCATE( soil_pars_f%pars_xyz(0:soil_pars_f%np-1, &
1998	0:soil_pars_f%nz-1, &
1999	nys:nyn,nxl:nxr) )
2000	CALL get_variable( id_surf, 'soil_pars', &
2001	soil_pars_f%pars_xyz, &
2002	nxl, nxr, nys, nyn, 0, soil_pars_f%nz-1, &
2003	0, soil_pars_f%np-1 )
2004
2005	ENDIF
2006	ELSE
2007	soil_pars_f%from_file = .FALSE.
2008	ENDIF
2009
2010	!
2011	!-- Read water parameters and related information
2012	IF ( check_existence( var_names, 'water_pars' ) ) THEN
2013	water_pars_f%from_file = .TRUE.
2014	CALL get_attribute( id_surf, char_fill, &
2015	water_pars_f%fill, &
2016	.FALSE., 'water_pars' )
2017	!
2018	!-- Inquire number of water parameters
2019	CALL netcdf_data_input_get_dimension_length( id_surf, &
2020	water_pars_f%np, &
2021	'nwater_pars' )
2022	!
2023	!-- Allocate dimension array and input array for water parameters
2024	ALLOCATE( water_pars_f%pars(0:water_pars_f%np-1) )
2025	ALLOCATE( water_pars_f%pars_xy(0:water_pars_f%np-1, &
2026	nys:nyn,nxl:nxr) )
2027	!
2028	!-- Get dimension of water parameters
2029	CALL get_variable( id_surf, 'nwater_pars', water_pars_f%pars )
2030
2031	CALL get_variable( id_surf, 'water_pars', water_pars_f%pars_xy, &
2032	nxl, nxr, nys, nyn, 0, water_pars_f%np-1 )
2033	ELSE
2034	water_pars_f%from_file = .FALSE.
2035	ENDIF
2036	!
2037	!-- Read root area density - parametrized vegetation
2038	IF ( check_existence( var_names, 'root_area_dens_s' ) ) THEN
2039	root_area_density_lsm_f%from_file = .TRUE.
2040	CALL get_attribute( id_surf, char_fill, &
2041	root_area_density_lsm_f%fill, &
2042	.FALSE., 'root_area_dens_s' )
2043	!
2044	!-- Obtain number of soil layers from file and allocate variable
2045	CALL netcdf_data_input_get_dimension_length( id_surf, &
2046	root_area_density_lsm_f%nz, &
2047	'zsoil' )
2048	ALLOCATE( root_area_density_lsm_f%var &
2049	(0:root_area_density_lsm_f%nz-1, &
2050	nys:nyn,nxl:nxr) )
2051
2052	!
2053	!-- Read root-area density
2054	CALL get_variable( id_surf, 'root_area_dens_s', &
2055	root_area_density_lsm_f%var, &
2056	nxl, nxr, nys, nyn, &
2057	0, root_area_density_lsm_f%nz-1 )
2058
2059	ELSE
2060	root_area_density_lsm_f%from_file = .FALSE.
2061	ENDIF
2062	!
2063	!-- Read street type and street crossing
2064	IF ( check_existence( var_names, 'street_type' ) ) THEN
2065	street_type_f%from_file = .TRUE.
2066	CALL get_attribute( id_surf, char_fill, &
2067	street_type_f%fill, .FALSE., &
2068	'street_type' )
2069
2070	ALLOCATE ( street_type_f%var(nys:nyn,nxl:nxr) )
2071
2072	CALL get_variable( id_surf, 'street_type', street_type_f%var, &
2073	nxl, nxr, nys, nyn )
2074	ELSE
2075	street_type_f%from_file = .FALSE.
2076	ENDIF
2077
2078	IF ( check_existence( var_names, 'street_crossing' ) ) THEN
2079	street_crossing_f%from_file = .TRUE.
2080	CALL get_attribute( id_surf, char_fill, &
2081	street_crossing_f%fill, .FALSE., &
2082	'street_crossing' )
2083
2084	ALLOCATE ( street_crossing_f%var(nys:nyn,nxl:nxr) )
2085
2086	CALL get_variable( id_surf, 'street_crossing', &
2087	street_crossing_f%var, nxl, nxr, nys, nyn )
2088
2089	ELSE
2090	street_crossing_f%from_file = .FALSE.
2091	ENDIF
2092	!
2093	!-- Still missing: root_resolved and building_surface_pars.
2094	!-- Will be implemented as soon as they are available.
2095
2096	!
2097	!-- Finally, close input file
2098	CALL close_input_file( id_surf )
2099	#endif
2100	!
2101	!-- End of CPU measurement
2102	CALL cpu_log( log_point_s(82), 'NetCDF input', 'stop' )
2103	!
2104	!-- Exchange 1 ghost points for surface variables. Please note, ghost point
2105	!-- exchange for 3D parameter lists should be revised by using additional
2106	!-- MPI datatypes or rewriting exchange_horiz.
2107	!-- Moreover, varialbes will be resized in the following, including ghost
2108	!-- points.
2109	!-- Start with 2D Integer variables. Please note, for 8-bit integer
2110	!-- variables must be swapt to 32-bit integer before calling exchange_horiz.
2111	IF ( albedo_type_f%from_file ) THEN
2112	var_exchange_int = INT( albedo_type_f%fill, KIND = 1 )
2113	var_exchange_int(nys:nyn,nxl:nxr) = &
2114	INT( albedo_type_f%var(nys:nyn,nxl:nxr), KIND = 4 )
2115	CALL exchange_horiz_2d_int( var_exchange_int, nys, nyn, nxl, nxr, nbgp )
2116	DEALLOCATE( albedo_type_f%var )
2117	ALLOCATE( albedo_type_f%var(nysg:nyng,nxlg:nxrg) )
2118	albedo_type_f%var = INT( var_exchange_int, KIND = 1 )
2119	ENDIF
2120	IF ( pavement_type_f%from_file ) THEN
2121	var_exchange_int = INT( pavement_type_f%fill, KIND = 1 )
2122	var_exchange_int(nys:nyn,nxl:nxr) = &
2123	INT( pavement_type_f%var(nys:nyn,nxl:nxr), KIND = 4 )
2124	CALL exchange_horiz_2d_int( var_exchange_int, nys, nyn, nxl, nxr, nbgp )
2125	DEALLOCATE( pavement_type_f%var )
2126	ALLOCATE( pavement_type_f%var(nysg:nyng,nxlg:nxrg) )
2127	pavement_type_f%var = INT( var_exchange_int, KIND = 1 )
2128	ENDIF
2129	IF ( soil_type_f%from_file .AND. ALLOCATED( soil_type_f%var_2d ) ) THEN
2130	var_exchange_int = INT( soil_type_f%fill, KIND = 1 )
2131	var_exchange_int(nys:nyn,nxl:nxr) = &
2132	INT( soil_type_f%var_2d(nys:nyn,nxl:nxr), KIND = 4 )
2133	CALL exchange_horiz_2d_int( var_exchange_int, nys, nyn, nxl, nxr, nbgp )
2134	DEALLOCATE( soil_type_f%var_2d )
2135	ALLOCATE( soil_type_f%var_2d(nysg:nyng,nxlg:nxrg) )
2136	soil_type_f%var_2d = INT( var_exchange_int, KIND = 1 )
2137	ENDIF
2138	IF ( vegetation_type_f%from_file ) THEN
2139	var_exchange_int = INT( vegetation_type_f%fill, KIND = 1 )
2140	var_exchange_int(nys:nyn,nxl:nxr) = &
2141	INT( vegetation_type_f%var(nys:nyn,nxl:nxr), KIND = 4 )
2142	CALL exchange_horiz_2d_int( var_exchange_int, nys, nyn, nxl, nxr, nbgp )
2143	DEALLOCATE( vegetation_type_f%var )
2144	ALLOCATE( vegetation_type_f%var(nysg:nyng,nxlg:nxrg) )
2145	vegetation_type_f%var = INT( var_exchange_int, KIND = 1 )
2146	ENDIF
2147	IF ( water_type_f%from_file ) THEN
2148	var_exchange_int = INT( water_type_f%fill, KIND = 1 )
2149	var_exchange_int(nys:nyn,nxl:nxr) = &
2150	INT( water_type_f%var(nys:nyn,nxl:nxr), KIND = 4 )
2151	CALL exchange_horiz_2d_int( var_exchange_int, nys, nyn, nxl, nxr, nbgp )
2152	DEALLOCATE( water_type_f%var )
2153	ALLOCATE( water_type_f%var(nysg:nyng,nxlg:nxrg) )
2154	water_type_f%var = INT( var_exchange_int, KIND = 1 )
2155	ENDIF
2156	!
2157	!-- Exchange 1 ghost point for 3/4-D variables. For the sake of simplicity,
2158	!-- loop further dimensions to use 2D exchange routines.
2159	!-- This should be revised later by introducing new MPI datatypes.
2160	IF ( soil_type_f%from_file .AND. ALLOCATED( soil_type_f%var_3d ) ) &
2161	THEN
2162	ALLOCATE( var_dum_int_3d(0:nz_soil,nys:nyn,nxl:nxr) )
2163	var_dum_int_3d = soil_type_f%var_3d
2164	DEALLOCATE( soil_type_f%var_3d )
2165	ALLOCATE( soil_type_f%var_3d(0:nz_soil,nysg:nyng,nxlg:nxrg) )
2166	soil_type_f%var_3d = soil_type_f%fill
2167
2168	DO k = 0, nz_soil
2169	var_exchange_int(nys:nyn,nxl:nxr) = var_dum_int_3d(k,nys:nyn,nxl:nxr)
2170	CALL exchange_horiz_2d_int( var_exchange_int, nys, nyn, nxl, nxr, nbgp )
2171	soil_type_f%var_3d(k,:,:) = INT( var_exchange_int(:,:), KIND = 1 )
2172	ENDDO
2173	DEALLOCATE( var_dum_int_3d )
2174	ENDIF
2175
2176	IF ( surface_fraction_f%from_file ) THEN
2177	ALLOCATE( var_dum_real_3d(0:surface_fraction_f%nf-1,nys:nyn,nxl:nxr) )
2178	var_dum_real_3d = surface_fraction_f%frac
2179	DEALLOCATE( surface_fraction_f%frac )
2180	ALLOCATE( surface_fraction_f%frac(0:surface_fraction_f%nf-1, &
2181	nysg:nyng,nxlg:nxrg) )
2182	surface_fraction_f%frac = surface_fraction_f%fill
2183
2184	DO k = 0, surface_fraction_f%nf-1
2185	var_exchange_real(nys:nyn,nxl:nxr) = var_dum_real_3d(k,nys:nyn,nxl:nxr)
2186	CALL exchange_horiz_2d( var_exchange_real, nbgp )
2187	surface_fraction_f%frac(k,:,:) = var_exchange_real(:,:)
2188	ENDDO
2189	DEALLOCATE( var_dum_real_3d )
2190	ENDIF
2191
2192	IF ( building_pars_f%from_file ) THEN
2193	ALLOCATE( var_dum_real_3d(0:building_pars_f%np-1,nys:nyn,nxl:nxr) )
2194	var_dum_real_3d = building_pars_f%pars_xy
2195	DEALLOCATE( building_pars_f%pars_xy )
2196	ALLOCATE( building_pars_f%pars_xy(0:building_pars_f%np-1, &
2197	nysg:nyng,nxlg:nxrg) )
2198	building_pars_f%pars_xy = building_pars_f%fill
2199	DO k = 0, building_pars_f%np-1
2200	var_exchange_real(nys:nyn,nxl:nxr) = &
2201	var_dum_real_3d(k,nys:nyn,nxl:nxr)
2202	CALL exchange_horiz_2d( var_exchange_real, nbgp )
2203	building_pars_f%pars_xy(k,:,:) = var_exchange_real(:,:)
2204	ENDDO
2205	DEALLOCATE( var_dum_real_3d )
2206	ENDIF
2207
2208	IF ( albedo_pars_f%from_file ) THEN
2209	ALLOCATE( var_dum_real_3d(0:albedo_pars_f%np-1,nys:nyn,nxl:nxr) )
2210	var_dum_real_3d = albedo_pars_f%pars_xy
2211	DEALLOCATE( albedo_pars_f%pars_xy )
2212	ALLOCATE( albedo_pars_f%pars_xy(0:albedo_pars_f%np-1, &
2213	nysg:nyng,nxlg:nxrg) )
2214	albedo_pars_f%pars_xy = albedo_pars_f%fill
2215	DO k = 0, albedo_pars_f%np-1
2216	var_exchange_real(nys:nyn,nxl:nxr) = &
2217	var_dum_real_3d(k,nys:nyn,nxl:nxr)
2218	CALL exchange_horiz_2d( var_exchange_real, nbgp )
2219	albedo_pars_f%pars_xy(k,:,:) = var_exchange_real(:,:)
2220	ENDDO
2221	DEALLOCATE( var_dum_real_3d )
2222	ENDIF
2223
2224	IF ( pavement_pars_f%from_file ) THEN
2225	ALLOCATE( var_dum_real_3d(0:pavement_pars_f%np-1,nys:nyn,nxl:nxr) )
2226	var_dum_real_3d = pavement_pars_f%pars_xy
2227	DEALLOCATE( pavement_pars_f%pars_xy )
2228	ALLOCATE( pavement_pars_f%pars_xy(0:pavement_pars_f%np-1, &
2229	nysg:nyng,nxlg:nxrg) )
2230	pavement_pars_f%pars_xy = pavement_pars_f%fill
2231	DO k = 0, pavement_pars_f%np-1
2232	var_exchange_real(nys:nyn,nxl:nxr) = &
2233	var_dum_real_3d(k,nys:nyn,nxl:nxr)
2234	CALL exchange_horiz_2d( var_exchange_real, nbgp )
2235	pavement_pars_f%pars_xy(k,:,:) = var_exchange_real(:,:)
2236	ENDDO
2237	DEALLOCATE( var_dum_real_3d )
2238	ENDIF
2239
2240	IF ( vegetation_pars_f%from_file ) THEN
2241	ALLOCATE( var_dum_real_3d(0:vegetation_pars_f%np-1,nys:nyn,nxl:nxr) )
2242	var_dum_real_3d = vegetation_pars_f%pars_xy
2243	DEALLOCATE( vegetation_pars_f%pars_xy )
2244	ALLOCATE( vegetation_pars_f%pars_xy(0:vegetation_pars_f%np-1, &
2245	nysg:nyng,nxlg:nxrg) )
2246	vegetation_pars_f%pars_xy = vegetation_pars_f%fill
2247	DO k = 0, vegetation_pars_f%np-1
2248	var_exchange_real(nys:nyn,nxl:nxr) = &
2249	var_dum_real_3d(k,nys:nyn,nxl:nxr)
2250	CALL exchange_horiz_2d( var_exchange_real, nbgp )
2251	vegetation_pars_f%pars_xy(k,:,:) = var_exchange_real(:,:)
2252	ENDDO
2253	DEALLOCATE( var_dum_real_3d )
2254	ENDIF
2255
2256	IF ( water_pars_f%from_file ) THEN
2257	ALLOCATE( var_dum_real_3d(0:water_pars_f%np-1,nys:nyn,nxl:nxr) )
2258	var_dum_real_3d = water_pars_f%pars_xy
2259	DEALLOCATE( water_pars_f%pars_xy )
2260	ALLOCATE( water_pars_f%pars_xy(0:water_pars_f%np-1, &
2261	nysg:nyng,nxlg:nxrg) )
2262	water_pars_f%pars_xy = water_pars_f%fill
2263	DO k = 0, water_pars_f%np-1
2264	var_exchange_real(nys:nyn,nxl:nxr) = &
2265	var_dum_real_3d(k,nys:nyn,nxl:nxr)
2266	CALL exchange_horiz_2d( var_exchange_real, nbgp )
2267	water_pars_f%pars_xy(k,:,:) = var_exchange_real(:,:)
2268	ENDDO
2269	DEALLOCATE( var_dum_real_3d )
2270	ENDIF
2271
2272	IF ( root_area_density_lsm_f%from_file ) THEN
2273	ALLOCATE( var_dum_real_3d(0:root_area_density_lsm_f%nz-1,nys:nyn,nxl:nxr) )
2274	var_dum_real_3d = root_area_density_lsm_f%var
2275	DEALLOCATE( root_area_density_lsm_f%var )
2276	ALLOCATE( root_area_density_lsm_f%var(0:root_area_density_lsm_f%nz-1,&
2277	nysg:nyng,nxlg:nxrg) )
2278	root_area_density_lsm_f%var = root_area_density_lsm_f%fill
2279
2280	DO k = 0, root_area_density_lsm_f%nz-1
2281	var_exchange_real(nys:nyn,nxl:nxr) = &
2282	var_dum_real_3d(k,nys:nyn,nxl:nxr)
2283	CALL exchange_horiz_2d( var_exchange_real, nbgp )
2284	root_area_density_lsm_f%var(k,:,:) = var_exchange_real(:,:)
2285	ENDDO
2286	DEALLOCATE( var_dum_real_3d )
2287	ENDIF
2288
2289	IF ( soil_pars_f%from_file ) THEN
2290	IF ( soil_pars_f%lod == 1 ) THEN
2291
2292	ALLOCATE( var_dum_real_3d(0:soil_pars_f%np-1,nys:nyn,nxl:nxr) )
2293	var_dum_real_3d = soil_pars_f%pars_xy
2294	DEALLOCATE( soil_pars_f%pars_xy )
2295	ALLOCATE( soil_pars_f%pars_xy(0:soil_pars_f%np-1, &
2296	nysg:nyng,nxlg:nxrg) )
2297	soil_pars_f%pars_xy = soil_pars_f%fill
2298
2299	DO k = 0, soil_pars_f%np-1
2300	var_exchange_real(nys:nyn,nxl:nxr) = &
2301	var_dum_real_3d(k,nys:nyn,nxl:nxr)
2302	CALL exchange_horiz_2d( var_exchange_real, nbgp )
2303	soil_pars_f%pars_xy(k,:,:) = var_exchange_real(:,:)
2304	ENDDO
2305	DEALLOCATE( var_dum_real_3d )
2306	ELSEIF ( soil_pars_f%lod == 2 ) THEN
2307	ALLOCATE( var_dum_real_4d(0:soil_pars_f%np-1, &
2308	0:soil_pars_f%nz-1, &
2309	nys:nyn,nxl:nxr) )
2310	var_dum_real_4d = soil_pars_f%pars_xyz
2311	DEALLOCATE( soil_pars_f%pars_xyz )
2312	ALLOCATE( soil_pars_f%pars_xyz(0:soil_pars_f%np-1, &
2313	0:soil_pars_f%nz-1, &
2314	nysg:nyng,nxlg:nxrg) )
2315	soil_pars_f%pars_xyz = soil_pars_f%fill
2316
2317	DO k2 = 0, soil_pars_f%nz-1
2318	DO k = 0, soil_pars_f%np-1
2319	var_exchange_real(nys:nyn,nxl:nxr) = &
2320	var_dum_real_4d(k,k2,nys:nyn,nxl:nxr)
2321	CALL exchange_horiz_2d( var_exchange_real, nbgp )
2322
2323	soil_pars_f%pars_xyz(k,k2,:,:) = var_exchange_real(:,:)
2324	ENDDO
2325	ENDDO
2326	DEALLOCATE( var_dum_real_4d )
2327	ENDIF
2328	ENDIF
2329
2330	IF ( pavement_subsurface_pars_f%from_file ) THEN
2331	ALLOCATE( var_dum_real_4d(0:pavement_subsurface_pars_f%np-1, &
2332	0:pavement_subsurface_pars_f%nz-1, &
2333	nys:nyn,nxl:nxr) )
2334	var_dum_real_4d = pavement_subsurface_pars_f%pars_xyz
2335	DEALLOCATE( pavement_subsurface_pars_f%pars_xyz )
2336	ALLOCATE( pavement_subsurface_pars_f%pars_xyz &
2337	(0:pavement_subsurface_pars_f%np-1, &
2338	0:pavement_subsurface_pars_f%nz-1, &
2339	nysg:nyng,nxlg:nxrg) )
2340	pavement_subsurface_pars_f%pars_xyz = pavement_subsurface_pars_f%fill
2341
2342	DO k2 = 0, pavement_subsurface_pars_f%nz-1
2343	DO k = 0, pavement_subsurface_pars_f%np-1
2344	var_exchange_real(nys:nyn,nxl:nxr) = &
2345	var_dum_real_4d(k,k2,nys:nyn,nxl:nxr)
2346	CALL exchange_horiz_2d( var_exchange_real, nbgp )
2347	pavement_subsurface_pars_f%pars_xyz(k,k2,:,:) = &
2348	var_exchange_real(:,:)
2349	ENDDO
2350	ENDDO
2351	DEALLOCATE( var_dum_real_4d )
2352	ENDIF
2353
2354	!
2355	!-- In case of non-cyclic boundary conditions, set Neumann conditions at the
2356	!-- lateral boundaries.
2357	IF ( .NOT. bc_ns_cyc ) THEN
2358	IF ( nys == 0 ) THEN
2359	IF ( albedo_type_f%from_file ) &
2360	albedo_type_f%var(-1,:) = albedo_type_f%var(0,:)
2361	IF ( pavement_type_f%from_file ) &
2362	pavement_type_f%var(-1,:) = pavement_type_f%var(0,:)
2363	IF ( soil_type_f%from_file ) THEN
2364	IF ( ALLOCATED( soil_type_f%var_2d ) ) THEN
2365	soil_type_f%var_2d(-1,:) = soil_type_f%var_2d(0,:)
2366	ELSE
2367	soil_type_f%var_3d(:,-1,:) = soil_type_f%var_3d(:,0,:)
2368	ENDIF
2369	ENDIF
2370	IF ( vegetation_type_f%from_file ) &
2371	vegetation_type_f%var(-1,:) = vegetation_type_f%var(0,:)
2372	IF ( water_type_f%from_file ) &
2373	water_type_f%var(-1,:) = water_type_f%var(0,:)
2374	IF ( surface_fraction_f%from_file ) &
2375	surface_fraction_f%frac(:,-1,:) = surface_fraction_f%frac(:,0,:)
2376	IF ( building_pars_f%from_file ) &
2377	building_pars_f%pars_xy(:,-1,:) = building_pars_f%pars_xy(:,0,:)
2378	IF ( albedo_pars_f%from_file ) &
2379	albedo_pars_f%pars_xy(:,-1,:) = albedo_pars_f%pars_xy(:,0,:)
2380	IF ( pavement_pars_f%from_file ) &
2381	pavement_pars_f%pars_xy(:,-1,:) = pavement_pars_f%pars_xy(:,0,:)
2382	IF ( vegetation_pars_f%from_file ) &
2383	vegetation_pars_f%pars_xy(:,-1,:) = &
2384	vegetation_pars_f%pars_xy(:,0,:)
2385	IF ( water_pars_f%from_file ) &
2386	water_pars_f%pars_xy(:,-1,:) = water_pars_f%pars_xy(:,0,:)
2387	IF ( root_area_density_lsm_f%from_file ) &
2388	root_area_density_lsm_f%var(:,-1,:) = &
2389	root_area_density_lsm_f%var(:,0,:)
2390	IF ( soil_pars_f%from_file ) THEN
2391	IF ( soil_pars_f%lod == 1 ) THEN
2392	soil_pars_f%pars_xy(:,-1,:) = soil_pars_f%pars_xy(:,0,:)
2393	ELSE
2394	soil_pars_f%pars_xyz(:,:,-1,:) = soil_pars_f%pars_xyz(:,:,0,:)
2395	ENDIF
2396	ENDIF
2397	IF ( pavement_subsurface_pars_f%from_file ) &
2398	pavement_subsurface_pars_f%pars_xyz(:,:,-1,:) = &
2399	pavement_subsurface_pars_f%pars_xyz(:,:,0,:)
2400	ENDIF
2401
2402	IF ( nyn == ny ) THEN
2403	IF ( albedo_type_f%from_file ) &
2404	albedo_type_f%var(ny+1,:) = albedo_type_f%var(ny,:)
2405	IF ( pavement_type_f%from_file ) &
2406	pavement_type_f%var(ny+1,:) = pavement_type_f%var(ny,:)
2407	IF ( soil_type_f%from_file ) THEN
2408	IF ( ALLOCATED( soil_type_f%var_2d ) ) THEN
2409	soil_type_f%var_2d(ny+1,:) = soil_type_f%var_2d(ny,:)
2410	ELSE
2411	soil_type_f%var_3d(:,ny+1,:) = soil_type_f%var_3d(:,ny,:)
2412	ENDIF
2413	ENDIF
2414	IF ( vegetation_type_f%from_file ) &
2415	vegetation_type_f%var(ny+1,:) = vegetation_type_f%var(ny,:)
2416	IF ( water_type_f%from_file ) &
2417	water_type_f%var(ny+1,:) = water_type_f%var(ny,:)
2418	IF ( surface_fraction_f%from_file ) &
2419	surface_fraction_f%frac(:,ny+1,:) = &
2420	surface_fraction_f%frac(:,ny,:)
2421	IF ( building_pars_f%from_file ) &
2422	building_pars_f%pars_xy(:,ny+1,:) = &
2423	building_pars_f%pars_xy(:,ny,:)
2424	IF ( albedo_pars_f%from_file ) &
2425	albedo_pars_f%pars_xy(:,ny+1,:) = albedo_pars_f%pars_xy(:,ny,:)
2426	IF ( pavement_pars_f%from_file ) &
2427	pavement_pars_f%pars_xy(:,ny+1,:) = &
2428	pavement_pars_f%pars_xy(:,ny,:)
2429	IF ( vegetation_pars_f%from_file ) &
2430	vegetation_pars_f%pars_xy(:,ny+1,:) = &
2431	vegetation_pars_f%pars_xy(:,ny,:)
2432	IF ( water_pars_f%from_file ) &
2433	water_pars_f%pars_xy(:,ny+1,:) = water_pars_f%pars_xy(:,ny,:)
2434	IF ( root_area_density_lsm_f%from_file ) &
2435	root_area_density_lsm_f%var(:,ny+1,:) = &
2436	root_area_density_lsm_f%var(:,ny,:)
2437	IF ( soil_pars_f%from_file ) THEN
2438	IF ( soil_pars_f%lod == 1 ) THEN
2439	soil_pars_f%pars_xy(:,ny+1,:) = soil_pars_f%pars_xy(:,ny,:)
2440	ELSE
2441	soil_pars_f%pars_xyz(:,:,ny+1,:) = &
2442	soil_pars_f%pars_xyz(:,:,ny,:)
2443	ENDIF
2444	ENDIF
2445	IF ( pavement_subsurface_pars_f%from_file ) &
2446	pavement_subsurface_pars_f%pars_xyz(:,:,ny+1,:) = &
2447	pavement_subsurface_pars_f%pars_xyz(:,:,ny,:)
2448	ENDIF
2449	ENDIF
2450
2451	IF ( .NOT. bc_lr_cyc ) THEN
2452	IF ( nxl == 0 ) THEN
2453	IF ( albedo_type_f%from_file ) &
2454	albedo_type_f%var(:,-1) = albedo_type_f%var(:,0)
2455	IF ( pavement_type_f%from_file ) &
2456	pavement_type_f%var(:,-1) = pavement_type_f%var(:,0)
2457	IF ( soil_type_f%from_file ) THEN
2458	IF ( ALLOCATED( soil_type_f%var_2d ) ) THEN
2459	soil_type_f%var_2d(:,-1) = soil_type_f%var_2d(:,0)
2460	ELSE
2461	soil_type_f%var_3d(:,:,-1) = soil_type_f%var_3d(:,:,0)
2462	ENDIF
2463	ENDIF
2464	IF ( vegetation_type_f%from_file ) &
2465	vegetation_type_f%var(:,-1) = vegetation_type_f%var(:,0)
2466	IF ( water_type_f%from_file ) &
2467	water_type_f%var(:,-1) = water_type_f%var(:,0)
2468	IF ( surface_fraction_f%from_file ) &
2469	surface_fraction_f%frac(:,:,-1) = surface_fraction_f%frac(:,:,0)
2470	IF ( building_pars_f%from_file ) &
2471	building_pars_f%pars_xy(:,:,-1) = building_pars_f%pars_xy(:,:,0)
2472	IF ( albedo_pars_f%from_file ) &
2473	albedo_pars_f%pars_xy(:,:,-1) = albedo_pars_f%pars_xy(:,:,0)
2474	IF ( pavement_pars_f%from_file ) &
2475	pavement_pars_f%pars_xy(:,:,-1) = pavement_pars_f%pars_xy(:,:,0)
2476	IF ( vegetation_pars_f%from_file ) &
2477	vegetation_pars_f%pars_xy(:,:,-1) = &
2478	vegetation_pars_f%pars_xy(:,:,0)
2479	IF ( water_pars_f%from_file ) &
2480	water_pars_f%pars_xy(:,:,-1) = water_pars_f%pars_xy(:,:,0)
2481	IF ( root_area_density_lsm_f%from_file ) &
2482	root_area_density_lsm_f%var(:,:,-1) = &
2483	root_area_density_lsm_f%var(:,:,0)
2484	IF ( soil_pars_f%from_file ) THEN
2485	IF ( soil_pars_f%lod == 1 ) THEN
2486	soil_pars_f%pars_xy(:,:,-1) = soil_pars_f%pars_xy(:,:,0)
2487	ELSE
2488	soil_pars_f%pars_xyz(:,:,:,-1) = soil_pars_f%pars_xyz(:,:,:,0)
2489	ENDIF
2490	ENDIF
2491	IF ( pavement_subsurface_pars_f%from_file ) &
2492	pavement_subsurface_pars_f%pars_xyz(:,:,:,-1) = &
2493	pavement_subsurface_pars_f%pars_xyz(:,:,:,0)
2494	ENDIF
2495
2496	IF ( nxr == nx ) THEN
2497	IF ( albedo_type_f%from_file ) &
2498	albedo_type_f%var(:,nx+1) = albedo_type_f%var(:,nx)
2499	IF ( pavement_type_f%from_file ) &
2500	pavement_type_f%var(:,nx+1) = pavement_type_f%var(:,nx)
2501	IF ( soil_type_f%from_file ) THEN
2502	IF ( ALLOCATED( soil_type_f%var_2d ) ) THEN
2503	soil_type_f%var_2d(:,nx+1) = soil_type_f%var_2d(:,nx)
2504	ELSE
2505	soil_type_f%var_3d(:,:,nx+1) = soil_type_f%var_3d(:,:,nx)
2506	ENDIF
2507	ENDIF
2508	IF ( vegetation_type_f%from_file ) &
2509	vegetation_type_f%var(:,nx+1) = vegetation_type_f%var(:,nx)
2510	IF ( water_type_f%from_file ) &
2511	water_type_f%var(:,nx+1) = water_type_f%var(:,nx)
2512	IF ( surface_fraction_f%from_file ) &
2513	surface_fraction_f%frac(:,:,nx+1) = &
2514	surface_fraction_f%frac(:,:,nx)
2515	IF ( building_pars_f%from_file ) &
2516	building_pars_f%pars_xy(:,:,nx+1) = &
2517	building_pars_f%pars_xy(:,:,nx)
2518	IF ( albedo_pars_f%from_file ) &
2519	albedo_pars_f%pars_xy(:,:,nx+1) = albedo_pars_f%pars_xy(:,:,nx)
2520	IF ( pavement_pars_f%from_file ) &
2521	pavement_pars_f%pars_xy(:,:,nx+1) = &
2522	pavement_pars_f%pars_xy(:,:,nx)
2523	IF ( vegetation_pars_f%from_file ) &
2524	vegetation_pars_f%pars_xy(:,:,nx+1) = &
2525	vegetation_pars_f%pars_xy(:,:,nx)
2526	IF ( water_pars_f%from_file ) &
2527	water_pars_f%pars_xy(:,:,nx+1) = water_pars_f%pars_xy(:,:,nx)
2528	IF ( root_area_density_lsm_f%from_file ) &
2529	root_area_density_lsm_f%var(:,:,nx+1) = &
2530	root_area_density_lsm_f%var(:,:,nx)
2531	IF ( soil_pars_f%from_file ) THEN
2532	IF ( soil_pars_f%lod == 1 ) THEN
2533	soil_pars_f%pars_xy(:,:,nx+1) = soil_pars_f%pars_xy(:,:,nx)
2534	ELSE
2535	soil_pars_f%pars_xyz(:,:,:,nx+1) = &
2536	soil_pars_f%pars_xyz(:,:,:,nx)
2537	ENDIF
2538	ENDIF
2539	IF ( pavement_subsurface_pars_f%from_file ) &
2540	pavement_subsurface_pars_f%pars_xyz(:,:,:,nx+1) = &
2541	pavement_subsurface_pars_f%pars_xyz(:,:,:,nx)
2542	ENDIF
2543	ENDIF
2544
2545	END SUBROUTINE netcdf_data_input_surface_data
2546
2547	!------------------------------------------------------------------------------!
2548	! Description:
2549	! ------------
2550	!> Reads uvem lookup table information.
2551	!------------------------------------------------------------------------------!
2552	SUBROUTINE netcdf_data_input_uvem
2553
2554	USE indices, &
2555	ONLY: nxl, nxr, nyn, nys
2556
2557	IMPLICIT NONE
2558
2559	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names !< variable names in static input file
2560
2561
2562	INTEGER(iwp) :: id_uvem !< NetCDF id of uvem lookup table input file
2563	INTEGER(iwp) :: nli = 35 !< dimension length of lookup table in x
2564	INTEGER(iwp) :: nlj = 9 !< dimension length of lookup table in y
2565	INTEGER(iwp) :: nlk = 90 !< dimension length of lookup table in z
2566	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
2567	!
2568	!-- Input via uv exposure model lookup table input
2569	IF ( input_pids_uvem ) THEN
2570
2571	#if defined ( __netcdf )
2572	!
2573	!-- Open file in read-only mode
2574	CALL open_read_file( TRIM( input_file_uvem ) // &
2575	TRIM( coupling_char ), id_uvem )
2576	!
2577	!-- At first, inquire all variable names.
2578	!-- This will be used to check whether an input variable exist or not.
2579	CALL inquire_num_variables( id_uvem, num_vars )
2580	!
2581	!-- Allocate memory to store variable names and inquire them.
2582	ALLOCATE( var_names(1:num_vars) )
2583	CALL inquire_variable_names( id_uvem, var_names )
2584	!
2585	!
2586	!-- uvem integration
2587	IF ( check_existence( var_names, 'int_factors' ) ) THEN
2588	uvem_integration_f%from_file = .TRUE.
2589	!
2590	!-- Input 2D uvem integration.
2591	ALLOCATE ( uvem_integration_f%var(0:nlj,0:nli) )
2592
2593	CALL get_variable( id_uvem, 'int_factors', uvem_integration_f%var, 0, nli, 0, nlj )
2594	ELSE
2595	uvem_integration_f%from_file = .FALSE.
2596	ENDIF
2597	!
2598	!
2599	!
2600	!-- uvem irradiance
2601	IF ( check_existence( var_names, 'irradiance' ) ) THEN
2602	uvem_irradiance_f%from_file = .TRUE.
2603	!
2604	!-- Input 2D uvem irradiance.
2605	ALLOCATE ( uvem_irradiance_f%var(0:nlk, 0:2) )
2606
2607	CALL get_variable( id_uvem, 'irradiance', uvem_irradiance_f%var, 0, 2, 0, nlk )
2608	ELSE
2609	uvem_irradiance_f%from_file = .FALSE.
2610	ENDIF
2611	!
2612	!
2613	!
2614	!-- uvem porjection areas
2615	IF ( check_existence( var_names, 'projarea' ) ) THEN
2616	uvem_projarea_f%from_file = .TRUE.
2617	!
2618	!-- Input 3D uvem projection area (human geometgry)
2619	ALLOCATE ( uvem_projarea_f%var(0:2,0:nlj,0:nli) )
2620
2621	CALL get_variable( id_uvem, 'projarea', uvem_projarea_f%var, 0, nli, 0, nlj, 0, 2 )
2622	ELSE
2623	uvem_projarea_f%from_file = .FALSE.
2624	ENDIF
2625	!
2626	!
2627	!
2628	!-- uvem radiance
2629	IF ( check_existence( var_names, 'radiance' ) ) THEN
2630	uvem_radiance_f%from_file = .TRUE.
2631	!
2632	!-- Input 3D uvem radiance
2633	ALLOCATE ( uvem_radiance_f%var(0:nlk,0:nlj,0:nli) )
2634
2635	CALL get_variable( id_uvem, 'radiance', uvem_radiance_f%var, 0, nli, 0, nlj, 0, nlk )
2636	ELSE
2637	uvem_radiance_f%from_file = .FALSE.
2638	ENDIF
2639	!
2640	!
2641	!
2642	!-- Read building obstruction
2643	IF ( check_existence( var_names, 'obstruction' ) ) THEN
2644	building_obstruction_full%from_file = .TRUE.
2645	!-- Input 3D uvem building obstruction
2646	ALLOCATE ( building_obstruction_full%var_3d(0:44,0:2,0:2) )
2647	CALL get_variable( id_uvem, 'obstruction', building_obstruction_full%var_3d,0, 2, 0, 2, 0, 44 )
2648	ELSE
2649	building_obstruction_full%from_file = .FALSE.
2650	ENDIF
2651	!
2652	IF ( check_existence( var_names, 'obstruction' ) ) THEN
2653	building_obstruction_f%from_file = .TRUE.
2654	!
2655	!-- Input 3D uvem building obstruction
2656	ALLOCATE ( building_obstruction_f%var_3d(0:44,nys:nyn,nxl:nxr) )
2657	!
2658	CALL get_variable( id_uvem, 'obstruction', building_obstruction_f%var_3d, &
2659	nxl, nxr, nys, nyn, 0, 44 )
2660	ELSE
2661	building_obstruction_f%from_file = .FALSE.
2662	ENDIF
2663	!
2664	!
2665	!
2666	!
2667	!-- Close uvem lookup table input file
2668	CALL close_input_file( id_uvem )
2669	#else
2670	CONTINUE
2671	#endif
2672	ENDIF
2673	END SUBROUTINE netcdf_data_input_uvem
2674
2675	!------------------------------------------------------------------------------!
2676	! Description:
2677	! ------------
2678	!> Reads orography and building information.
2679	!------------------------------------------------------------------------------!
2680	SUBROUTINE netcdf_data_input_topo
2681
2682	USE control_parameters, &
2683	ONLY: bc_lr_cyc, bc_ns_cyc, message_string, topography
2684
2685	USE indices, &
2686	ONLY: nbgp, nx, nxl, nxr, ny, nyn, nys, nzb
2687
2688
2689	IMPLICIT NONE
2690
2691	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names !< variable names in static input file
2692
2693
2694	INTEGER(iwp) :: i !< running index along x-direction
2695	INTEGER(iwp) :: ii !< running index for IO blocks
2696	INTEGER(iwp) :: id_topo !< NetCDF id of topograhy input file
2697	INTEGER(iwp) :: j !< running index along y-direction
2698	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
2699	INTEGER(iwp) :: skip_n_rows !< counting variable to skip rows while reading topography file
2700
2701	INTEGER(iwp), DIMENSION(nys-nbgp:nyn+nbgp,nxl-nbgp:nxr+nbgp) :: var_exchange_int !< dummy variables used to exchange 32-bit Integer arrays
2702
2703	REAL(wp) :: dum !< dummy variable to skip columns while reading topography file
2704	!
2705	!-- CPU measurement
2706	CALL cpu_log( log_point_s(83), 'NetCDF/ASCII input topo', 'start' )
2707
2708	!
2709	!-- Input via palm-input data standard
2710	IF ( input_pids_static ) THEN
2711	#if defined ( __netcdf )
2712	!
2713	!-- Open file in read-only mode
2714	CALL open_read_file( TRIM( input_file_static ) // &
2715	TRIM( coupling_char ), id_topo )
2716	!
2717	!-- At first, inquire all variable names.
2718	!-- This will be used to check whether an input variable exist
2719	!-- or not.
2720	CALL inquire_num_variables( id_topo, num_vars )
2721	!
2722	!-- Allocate memory to store variable names and inquire them.
2723	ALLOCATE( var_names(1:num_vars) )
2724	CALL inquire_variable_names( id_topo, var_names )
2725	!
2726	!-- Read x, y - dimensions. Only required for consistency checks.
2727	CALL netcdf_data_input_get_dimension_length( id_topo, dim_static%nx, 'x' )
2728	CALL netcdf_data_input_get_dimension_length( id_topo, dim_static%ny, 'y' )
2729	ALLOCATE( dim_static%x(0:dim_static%nx-1) )
2730	ALLOCATE( dim_static%y(0:dim_static%ny-1) )
2731	CALL get_variable( id_topo, 'x', dim_static%x )
2732	CALL get_variable( id_topo, 'y', dim_static%y )
2733	!
2734	!-- Terrain height. First, get variable-related _FillValue attribute
2735	IF ( check_existence( var_names, 'zt' ) ) THEN
2736	terrain_height_f%from_file = .TRUE.
2737	CALL get_attribute( id_topo, char_fill, terrain_height_f%fill, &
2738	.FALSE., 'zt' )
2739	!
2740	!-- Input 2D terrain height.
2741	ALLOCATE ( terrain_height_f%var(nys:nyn,nxl:nxr) )
2742
2743	CALL get_variable( id_topo, 'zt', terrain_height_f%var, &
2744	nxl, nxr, nys, nyn )
2745
2746	ELSE
2747	terrain_height_f%from_file = .FALSE.
2748	ENDIF
2749
2750	!
2751	!-- Read building height. First, read its _FillValue attribute,
2752	!-- as well as lod attribute
2753	buildings_f%from_file = .FALSE.
2754	IF ( check_existence( var_names, 'buildings_2d' ) ) THEN
2755	buildings_f%from_file = .TRUE.
2756	CALL get_attribute( id_topo, char_lod, buildings_f%lod, &
2757	.FALSE., 'buildings_2d' )
2758
2759	CALL get_attribute( id_topo, char_fill, buildings_f%fill1, &
2760	.FALSE., 'buildings_2d' )
2761
2762	!
2763	!-- Read 2D buildings
2764	IF ( buildings_f%lod == 1 ) THEN
2765	ALLOCATE ( buildings_f%var_2d(nys:nyn,nxl:nxr) )
2766
2767	CALL get_variable( id_topo, 'buildings_2d', &
2768	buildings_f%var_2d, &
2769	nxl, nxr, nys, nyn )
2770	ELSE
2771	message_string = 'NetCDF attribute lod ' // &
2772	'(level of detail) is not set ' // &
2773	'properly for buildings_2d.'
2774	CALL message( 'netcdf_data_input_mod', 'PA0540', &
2775	1, 2, 0, 6, 0 )
2776	ENDIF
2777	ENDIF
2778	!
2779	!-- If available, also read 3D building information. If both are
2780	!-- available, use 3D information.
2781	IF ( check_existence( var_names, 'buildings_3d' ) ) THEN
2782	buildings_f%from_file = .TRUE.
2783	CALL get_attribute( id_topo, char_lod, buildings_f%lod, &
2784	.FALSE., 'buildings_3d' )
2785
2786	CALL get_attribute( id_topo, char_fill, buildings_f%fill2, &
2787	.FALSE., 'buildings_3d' )
2788
2789	CALL netcdf_data_input_get_dimension_length( id_topo, &
2790	buildings_f%nz, 'z' )
2791	!
2792	!-- Read 3D buildings
2793	IF ( buildings_f%lod == 2 ) THEN
2794	ALLOCATE( buildings_f%z(nzb:buildings_f%nz-1) )
2795	CALL get_variable( id_topo, 'z', buildings_f%z )
2796
2797	ALLOCATE( buildings_f%var_3d(nzb:buildings_f%nz-1, &
2798	nys:nyn,nxl:nxr) )
2799	buildings_f%var_3d = 0
2800
2801	CALL get_variable( id_topo, 'buildings_3d', &
2802	buildings_f%var_3d, &
2803	nxl, nxr, nys, nyn, 0, buildings_f%nz-1 )
2804	ELSE
2805	message_string = 'NetCDF attribute lod ' // &
2806	'(level of detail) is not set ' // &
2807	'properly for buildings_3d.'
2808	CALL message( 'netcdf_data_input_mod', 'PA0541', &
2809	1, 2, 0, 6, 0 )
2810	ENDIF
2811	ENDIF
2812	!
2813	!-- Read building IDs and its FillValue attribute. Further required
2814	!-- for mapping buildings on top of orography.
2815	IF ( check_existence( var_names, 'building_id' ) ) THEN
2816	building_id_f%from_file = .TRUE.
2817	CALL get_attribute( id_topo, char_fill, &
2818	building_id_f%fill, .FALSE., &
2819	'building_id' )
2820
2821	ALLOCATE ( building_id_f%var(nys:nyn,nxl:nxr) )
2822
2823	CALL get_variable( id_topo, 'building_id', building_id_f%var, &
2824	nxl, nxr, nys, nyn )
2825	ELSE
2826	building_id_f%from_file = .FALSE.
2827	ENDIF
2828	!
2829	!-- Read building_type and required attributes.
2830	IF ( check_existence( var_names, 'building_type' ) ) THEN
2831	building_type_f%from_file = .TRUE.
2832	CALL get_attribute( id_topo, char_fill, &
2833	building_type_f%fill, .FALSE., &
2834	'building_type' )
2835
2836	ALLOCATE ( building_type_f%var(nys:nyn,nxl:nxr) )
2837
2838	CALL get_variable( id_topo, 'building_type', building_type_f%var, &
2839	nxl, nxr, nys, nyn )
2840
2841	ELSE
2842	building_type_f%from_file = .FALSE.
2843	ENDIF
2844	!
2845	!-- Close topography input file
2846	CALL close_input_file( id_topo )
2847	#else
2848	CONTINUE
2849	#endif
2850	!
2851	!-- ASCII input
2852	ELSEIF ( TRIM( topography ) == 'read_from_file' ) THEN
2853
2854	DO ii = 0, io_blocks-1
2855	IF ( ii == io_group ) THEN
2856
2857	OPEN( 90, FILE='TOPOGRAPHY_DATA'//TRIM( coupling_char ), &
2858	STATUS='OLD', FORM='FORMATTED', ERR=10 )
2859	!
2860	!-- Read topography PE-wise. Rows are read from nyn to nys, columns
2861	!-- are read from nxl to nxr. At first, ny-nyn rows need to be skipped.
2862	skip_n_rows = 0
2863	DO WHILE ( skip_n_rows < ny - nyn )
2864	READ( 90, * )
2865	skip_n_rows = skip_n_rows + 1
2866	ENDDO
2867	!
2868	!-- Read data from nyn to nys and nxl to nxr. Therefore, skip
2869	!-- column until nxl-1 is reached
2870	ALLOCATE ( buildings_f%var_2d(nys:nyn,nxl:nxr) )
2871	DO j = nyn, nys, -1
2872	READ( 90, *, ERR=11, END=11 ) &
2873	( dum, i = 0, nxl-1 ), &
2874	( buildings_f%var_2d(j,i), i = nxl, nxr )
2875	ENDDO
2876
2877	GOTO 12
2878
2879	10 message_string = 'file TOPOGRAPHY_DATA'// &
2880	TRIM( coupling_char )// ' does not exist'
2881	CALL message( 'netcdf_data_input_mod', 'PA0208', 1, 2, 0, 6, 0 )
2882
2883	11 message_string = 'errors in file TOPOGRAPHY_DATA'// &
2884	TRIM( coupling_char )
2885	CALL message( 'netcdf_data_input_mod', 'PA0209', 2, 2, 0, 6, 0 )
2886
2887	12 CLOSE( 90 )
2888	buildings_f%from_file = .TRUE.
2889
2890	ENDIF
2891	#if defined( __parallel )
2892	CALL MPI_BARRIER( comm2d, ierr )
2893	#endif
2894	ENDDO
2895
2896	ENDIF
2897	!
2898	!-- End of CPU measurement
2899	CALL cpu_log( log_point_s(83), 'NetCDF/ASCII input topo', 'stop' )
2900	!
2901	!-- Check for minimum requirement to setup building topography. If buildings
2902	!-- are provided, also an ID and a type are required.
2903	!-- Note, doing this check in check_parameters
2904	!-- will be too late (data will be used for grid inititialization before).
2905	IF ( input_pids_static ) THEN
2906	IF ( buildings_f%from_file .AND. &
2907	.NOT. building_id_f%from_file ) THEN
2908	message_string = 'If building heigths are prescribed in ' // &
2909	'static input file, also an ID is required.'
2910	CALL message( 'netcdf_data_input_mod', 'PA0542', 1, 2, 0, 6, 0 )
2911	ENDIF
2912	ENDIF
2913	!
2914	!-- In case no terrain height is provided by static input file, allocate
2915	!-- array nevertheless and set terrain height to 0, which simplifies
2916	!-- topography initialization.
2917	IF ( .NOT. terrain_height_f%from_file ) THEN
2918	ALLOCATE ( terrain_height_f%var(nys:nyn,nxl:nxr) )
2919	terrain_height_f%var = 0.0_wp
2920	ENDIF
2921	!
2922	!-- Finally, exchange 1 ghost point for building ID and type.
2923	!-- In case of non-cyclic boundary conditions set Neumann conditions at the
2924	!-- lateral boundaries.
2925	IF ( building_id_f%from_file ) THEN
2926	var_exchange_int = building_id_f%fill
2927	var_exchange_int(nys:nyn,nxl:nxr) = building_id_f%var(nys:nyn,nxl:nxr)
2928	CALL exchange_horiz_2d_int( var_exchange_int, nys, nyn, nxl, nxr, nbgp )
2929	DEALLOCATE( building_id_f%var )
2930	ALLOCATE( building_id_f%var(nys-nbgp:nyn+nbgp,nxl-nbgp:nxr+nbgp) )
2931	building_id_f%var = var_exchange_int
2932
2933	IF ( .NOT. bc_ns_cyc ) THEN
2934	IF ( nys == 0 ) building_id_f%var(-1,:) = building_id_f%var(0,:)
2935	IF ( nyn == ny ) building_id_f%var(ny+1,:) = building_id_f%var(ny,:)
2936	ENDIF
2937	IF ( .NOT. bc_lr_cyc ) THEN
2938	IF ( nxl == 0 ) building_id_f%var(:,-1) = building_id_f%var(:,0)
2939	IF ( nxr == nx ) building_id_f%var(:,nx+1) = building_id_f%var(:,nx)
2940	ENDIF
2941	ENDIF
2942
2943	IF ( building_type_f%from_file ) THEN
2944	var_exchange_int = INT( building_type_f%fill, KIND = 4 )
2945	var_exchange_int(nys:nyn,nxl:nxr) = &
2946	INT( building_type_f%var(nys:nyn,nxl:nxr), KIND = 4 )
2947	CALL exchange_horiz_2d_int( var_exchange_int, nys, nyn, nxl, nxr, nbgp )
2948	DEALLOCATE( building_type_f%var )
2949	ALLOCATE( building_type_f%var(nys-nbgp:nyn+nbgp,nxl-nbgp:nxr+nbgp) )
2950	building_type_f%var = INT( var_exchange_int, KIND = 1 )
2951
2952	IF ( .NOT. bc_ns_cyc ) THEN
2953	IF ( nys == 0 ) building_type_f%var(-1,:) = building_type_f%var(0,:)
2954	IF ( nyn == ny ) building_type_f%var(ny+1,:) = building_type_f%var(ny,:)
2955	ENDIF
2956	IF ( .NOT. bc_lr_cyc ) THEN
2957	IF ( nxl == 0 ) building_type_f%var(:,-1) = building_type_f%var(:,0)
2958	IF ( nxr == nx ) building_type_f%var(:,nx+1) = building_type_f%var(:,nx)
2959	ENDIF
2960	ENDIF
2961
2962	END SUBROUTINE netcdf_data_input_topo
2963
2964	!------------------------------------------------------------------------------!
2965	! Description:
2966	! ------------
2967	!> Reads initialization data of u, v, w, pt, q, geostrophic wind components,
2968	!> as well as soil moisture and soil temperature, derived from larger-scale
2969	!> model (COSMO) by Inifor.
2970	!------------------------------------------------------------------------------!
2971	SUBROUTINE netcdf_data_input_init_3d
2972
2973	USE arrays_3d, &
2974	ONLY: q, pt, u, v, w, zu, zw
2975
2976	USE control_parameters, &
2977	ONLY: bc_lr_cyc, bc_ns_cyc, humidity, message_string, neutral
2978
2979	USE indices, &
2980	ONLY: nx, nxl, nxlu, nxr, ny, nyn, nys, nysv, nzb, nz, nzt
2981
2982	IMPLICIT NONE
2983
2984	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names
2985
2986	LOGICAL :: dynamic_3d = .TRUE. !< flag indicating that 3D data is read from dynamic file
2987
2988	INTEGER(iwp) :: id_dynamic !< NetCDF id of dynamic input file
2989	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
2990
2991	LOGICAL :: check_passed !< flag indicating if a check passed
2992
2993	!
2994	!-- Skip routine if no input file with dynamic input data is available.
2995	IF ( .NOT. input_pids_dynamic ) RETURN
2996	!
2997	!-- Please note, Inifor is designed to provide initial data for u and v for
2998	!-- the prognostic grid points in case of lateral Dirichlet conditions.
2999	!-- This means that Inifor provides data from nxlu:nxr (for u) and
3000	!-- from nysv:nyn (for v) at the left and south domain boundary, respectively.
3001	!-- However, as work-around for the moment, PALM will run with cyclic
3002	!-- conditions and will be initialized with data provided by Inifor
3003	!-- boundaries in case of Dirichlet.
3004	!-- Hence, simply set set nxlu/nysv to 1 (will be reset to its original value
3005	!-- at the end of this routine.
3006	IF ( bc_lr_cyc .AND. nxl == 0 ) nxlu = 1
3007	IF ( bc_ns_cyc .AND. nys == 0 ) nysv = 1
3008
3009	!
3010	!-- CPU measurement
3011	CALL cpu_log( log_point_s(85), 'NetCDF input init', 'start' )
3012
3013	#if defined ( __netcdf )
3014	!
3015	!-- Open file in read-only mode
3016	CALL open_read_file( TRIM( input_file_dynamic ) // &
3017	TRIM( coupling_char ), id_dynamic )
3018
3019	!
3020	!-- At first, inquire all variable names.
3021	CALL inquire_num_variables( id_dynamic, num_vars )
3022	!
3023	!-- Allocate memory to store variable names.
3024	ALLOCATE( var_names(1:num_vars) )
3025	CALL inquire_variable_names( id_dynamic, var_names )
3026	!
3027	!-- Read vertical dimension of scalar und w grid.
3028	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nzu, 'z' )
3029	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nzw, 'zw' )
3030	!
3031	!-- Read also the horizontal dimensions. These are used just used fo
3032	!-- checking the compatibility with the PALM grid before reading.
3033	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nx, 'x' )
3034	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nxu, 'xu' )
3035	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%ny, 'y' )
3036	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nyv, 'yv' )
3037
3038	!
3039	!-- Check for correct horizontal and vertical dimension. Please note,
3040	!-- checks are performed directly here and not called from
3041	!-- check_parameters as some varialbes are still not allocated there.
3042	!-- Moreover, please note, u- and v-grid has 1 grid point less on
3043	!-- Inifor grid.
3044	IF ( init_3d%nx-1 /= nx .OR. init_3d%nxu-1 /= nx - 1 .OR. &
3045	init_3d%ny-1 /= ny .OR. init_3d%nyv-1 /= ny - 1 ) THEN
3046	message_string = 'Number of inifor horizontal grid points '// &
3047	'does not match the number of numeric grid '// &
3048	'points.'
3049	CALL message( 'netcdf_data_input_mod', 'PA0543', 1, 2, 0, 6, 0 )
3050	ENDIF
3051
3052	IF ( init_3d%nzu /= nz ) THEN
3053	message_string = 'Number of inifor vertical grid points ' // &
3054	'does not match the number of numeric grid '// &
3055	'points.'
3056	CALL message( 'netcdf_data_input_mod', 'PA0543', 1, 2, 0, 6, 0 )
3057	ENDIF
3058	!
3059	!-- Read vertical dimensions. Later, these are required for eventual
3060	!-- inter- and extrapolations of the initialization data.
3061	IF ( check_existence( var_names, 'z' ) ) THEN
3062	ALLOCATE( init_3d%zu_atmos(1:init_3d%nzu) )
3063	CALL get_variable( id_dynamic, 'z', init_3d%zu_atmos )
3064	ENDIF
3065	IF ( check_existence( var_names, 'zw' ) ) THEN
3066	ALLOCATE( init_3d%zw_atmos(1:init_3d%nzw) )
3067	CALL get_variable( id_dynamic, 'zw', init_3d%zw_atmos )
3068	ENDIF
3069	!
3070	!-- Check for consistency between vertical coordinates in dynamic
3071	!-- driver and numeric grid.
3072	!-- Please note, depending on compiler options both may be
3073	!-- equal up to a certain threshold, and differences between
3074	!-- the numeric grid and vertical coordinate in the driver can built-
3075	!-- up to 10E-1-10E-0 m. For this reason, the check is performed not
3076	!-- for exactly matching values.
3077	IF ( ANY( ABS( zu(1:nzt) - init_3d%zu_atmos(1:init_3d%nzu) ) &
3078	> 10E-1 ) .OR. &
3079	ANY( ABS( zw(1:nzt-1) - init_3d%zw_atmos(1:init_3d%nzw) ) &
3080	> 10E-1 ) ) THEN
3081	message_string = 'Vertical grid in dynamic driver does not '// &
3082	'match the numeric grid.'
3083	CALL message( 'netcdf_data_input_mod', 'PA0543', 1, 2, 0, 6, 0 )
3084	ENDIF
3085	!
3086	!-- Read initial geostrophic wind components at
3087	!-- t = 0 (index 1 in file).
3088	IF ( check_existence( var_names, 'ls_forcing_ug' ) ) THEN
3089	ALLOCATE( init_3d%ug_init(nzb:nzt+1) )
3090	init_3d%ug_init = 0.0_wp
3091
3092	CALL get_variable_pr( id_dynamic, 'ls_forcing_ug', 1, &
3093	init_3d%ug_init(1:nzt) )
3094	!
3095	!-- Set top-boundary condition (Neumann)
3096	init_3d%ug_init(nzt+1) = init_3d%ug_init(nzt)
3097
3098	init_3d%from_file_ug = .TRUE.
3099	ELSE
3100	init_3d%from_file_ug = .FALSE.
3101	ENDIF
3102	IF ( check_existence( var_names, 'ls_forcing_vg' ) ) THEN
3103	ALLOCATE( init_3d%vg_init(nzb:nzt+1) )
3104	init_3d%vg_init = 0.0_wp
3105
3106	CALL get_variable_pr( id_dynamic, 'ls_forcing_vg', 1, &
3107	init_3d%vg_init(1:nzt) )
3108	!
3109	!-- Set top-boundary condition (Neumann)
3110	init_3d%vg_init(nzt+1) = init_3d%vg_init(nzt)
3111
3112	init_3d%from_file_vg = .TRUE.
3113	ELSE
3114	init_3d%from_file_vg = .FALSE.
3115	ENDIF
3116	!
3117	!-- Read inital 3D data of u, v, w, pt and q,
3118	!-- derived from COSMO model. Read PE-wise yz-slices.
3119	!-- Please note, the u-, v- and w-component are defined on different
3120	!-- grids with one element less in the x-, y-,
3121	!-- and z-direction, respectively. Hence, reading is subdivided
3122	!-- into separate loops.
3123	!-- Read u-component
3124	IF ( check_existence( var_names, 'init_atmosphere_u' ) ) THEN
3125	!
3126	!-- Read attributes for the fill value and level-of-detail
3127	CALL get_attribute( id_dynamic, char_fill, init_3d%fill_u, &
3128	.FALSE., 'init_atmosphere_u' )
3129	CALL get_attribute( id_dynamic, char_lod, init_3d%lod_u, &
3130	.FALSE., 'init_atmosphere_u' )
3131	!
3132	!-- level-of-detail 1 - read initialization profile
3133	IF ( init_3d%lod_u == 1 ) THEN
3134	ALLOCATE( init_3d%u_init(nzb:nzt+1) )
3135	init_3d%u_init = 0.0_wp
3136
3137	CALL get_variable( id_dynamic, 'init_atmosphere_u', &
3138	init_3d%u_init(nzb+1:nzt) )
3139	!
3140	!-- Set top-boundary condition (Neumann)
3141	init_3d%u_init(nzt+1) = init_3d%u_init(nzt)
3142	!
3143	!-- level-of-detail 2 - read 3D initialization data
3144	ELSEIF ( init_3d%lod_u == 2 ) THEN
3145	CALL get_variable( id_dynamic, 'init_atmosphere_u', &
3146	u(nzb+1:nzt,nys:nyn,nxlu:nxr), &
3147	nxlu, nys+1, nzb+1, &
3148	nxr-nxlu+1, nyn-nys+1, init_3d%nzu, &
3149	dynamic_3d )
3150	!
3151	!-- Set value at leftmost model grid point nxl = 0. This is because
3152	!-- Inifor provides data only from 1:nx-1 since it assumes non-cyclic
3153	!-- conditions.
3154	IF ( nxl == 0 ) &
3155	u(nzb+1:nzt,nys:nyn,nxl) = u(nzb+1:nzt,nys:nyn,nxlu)
3156	!
3157	!-- Set bottom and top-boundary
3158	u(nzb,:,:) = u(nzb+1,:,:)
3159	u(nzt+1,:,:) = u(nzt,:,:)
3160
3161	ENDIF
3162	init_3d%from_file_u = .TRUE.
3163	ELSE
3164	message_string = 'Missing initial data for u-component'
3165	CALL message( 'netcdf_data_input_mod', 'PA0544', 1, 2, 0, 6, 0 )
3166	ENDIF
3167	!
3168	!-- Read v-component
3169	IF ( check_existence( var_names, 'init_atmosphere_v' ) ) THEN
3170	!
3171	!-- Read attributes for the fill value and level-of-detail
3172	CALL get_attribute( id_dynamic, char_fill, init_3d%fill_v, &
3173	.FALSE., 'init_atmosphere_v' )
3174	CALL get_attribute( id_dynamic, char_lod, init_3d%lod_v, &
3175	.FALSE., 'init_atmosphere_v' )
3176	!
3177	!-- level-of-detail 1 - read initialization profile
3178	IF ( init_3d%lod_v == 1 ) THEN
3179	ALLOCATE( init_3d%v_init(nzb:nzt+1) )
3180	init_3d%v_init = 0.0_wp
3181
3182	CALL get_variable( id_dynamic, 'init_atmosphere_v', &
3183	init_3d%v_init(nzb+1:nzt) )
3184	!
3185	!-- Set top-boundary condition (Neumann)
3186	init_3d%v_init(nzt+1) = init_3d%v_init(nzt)
3187	!
3188	!-- level-of-detail 2 - read 3D initialization data
3189	ELSEIF ( init_3d%lod_v == 2 ) THEN
3190
3191	CALL get_variable( id_dynamic, 'init_atmosphere_v', &
3192	v(nzb+1:nzt,nysv:nyn,nxl:nxr), &
3193	nxl+1, nysv, nzb+1, &
3194	nxr-nxl+1, nyn-nysv+1, init_3d%nzu, &
3195	dynamic_3d )
3196	!
3197	!-- Set value at southmost model grid point nys = 0. This is because
3198	!-- Inifor provides data only from 1:ny-1 since it assumes non-cyclic
3199	!-- conditions.
3200	IF ( nys == 0 ) &
3201	v(nzb+1:nzt,nys,nxl:nxr) = v(nzb+1:nzt,nysv,nxl:nxr)
3202	!
3203	!-- Set bottom and top-boundary
3204	v(nzb,:,:) = v(nzb+1,:,:)
3205	v(nzt+1,:,:) = v(nzt,:,:)
3206
3207	ENDIF
3208	init_3d%from_file_v = .TRUE.
3209	ELSE
3210	message_string = 'Missing initial data for v-component'
3211	CALL message( 'netcdf_data_input_mod', 'PA0544', 1, 2, 0, 6, 0 )
3212	ENDIF
3213	!
3214	!-- Read w-component
3215	IF ( check_existence( var_names, 'init_atmosphere_w' ) ) THEN
3216	!
3217	!-- Read attributes for the fill value and level-of-detail
3218	CALL get_attribute( id_dynamic, char_fill, init_3d%fill_w, &
3219	.FALSE., 'init_atmosphere_w' )
3220	CALL get_attribute( id_dynamic, char_lod, init_3d%lod_w, &
3221	.FALSE., 'init_atmosphere_w' )
3222	!
3223	!-- level-of-detail 1 - read initialization profile
3224	IF ( init_3d%lod_w == 1 ) THEN
3225	ALLOCATE( init_3d%w_init(nzb:nzt+1) )
3226	init_3d%w_init = 0.0_wp
3227
3228	CALL get_variable( id_dynamic, 'init_atmosphere_w', &
3229	init_3d%w_init(nzb+1:nzt-1) )
3230	!
3231	!-- Set top-boundary condition (Neumann)
3232	init_3d%w_init(nzt:nzt+1) = init_3d%w_init(nzt-1)
3233	!
3234	!-- level-of-detail 2 - read 3D initialization data
3235	ELSEIF ( init_3d%lod_w == 2 ) THEN
3236
3237	CALL get_variable( id_dynamic, 'init_atmosphere_w', &
3238	w(nzb+1:nzt-1,nys:nyn,nxl:nxr), &
3239	nxl+1, nys+1, nzb+1, &
3240	nxr-nxl+1, nyn-nys+1, init_3d%nzw, &
3241	dynamic_3d )
3242	!
3243	!-- Set bottom and top-boundary
3244	w(nzb,:,:) = 0.0_wp
3245	w(nzt,:,:) = w(nzt-1,:,:)
3246	w(nzt+1,:,:) = w(nzt-1,:,:)
3247
3248	ENDIF
3249	init_3d%from_file_w = .TRUE.
3250	ELSE
3251	message_string = 'Missing initial data for w-component'
3252	CALL message( 'netcdf_data_input_mod', 'PA0544', 1, 2, 0, 6, 0 )
3253	ENDIF
3254	!
3255	!-- Read potential temperature
3256	IF ( .NOT. neutral ) THEN
3257	IF ( check_existence( var_names, 'init_atmosphere_pt' ) ) THEN
3258	!
3259	!-- Read attributes for the fill value and level-of-detail
3260	CALL get_attribute( id_dynamic, char_fill, init_3d%fill_pt, &
3261	.FALSE., 'init_atmosphere_pt' )
3262	CALL get_attribute( id_dynamic, char_lod, init_3d%lod_pt, &
3263	.FALSE., 'init_atmosphere_pt' )
3264	!
3265	!-- level-of-detail 1 - read initialization profile
3266	IF ( init_3d%lod_pt == 1 ) THEN
3267	ALLOCATE( init_3d%pt_init(nzb:nzt+1) )
3268
3269	CALL get_variable( id_dynamic, 'init_atmosphere_pt', &
3270	init_3d%pt_init(nzb+1:nzt) )
3271	!
3272	!-- Set Neumann top and surface boundary condition for initial
3273	!-- profil
3274	init_3d%pt_init(nzb) = init_3d%pt_init(nzb+1)
3275	init_3d%pt_init(nzt+1) = init_3d%pt_init(nzt)
3276	!
3277	!-- level-of-detail 2 - read 3D initialization data
3278	ELSEIF ( init_3d%lod_pt == 2 ) THEN
3279
3280	CALL get_variable( id_dynamic, 'init_atmosphere_pt', &
3281	pt(nzb+1:nzt,nys:nyn,nxl:nxr), &
3282	nxl+1, nys+1, nzb+1, &
3283	nxr-nxl+1, nyn-nys+1, init_3d%nzu, &
3284	dynamic_3d )
3285
3286	!
3287	!-- Set bottom and top-boundary
3288	pt(nzb,:,:) = pt(nzb+1,:,:)
3289	pt(nzt+1,:,:) = pt(nzt,:,:)
3290
3291	ENDIF
3292	init_3d%from_file_pt = .TRUE.
3293	ELSE
3294	message_string = 'Missing initial data for ' // &
3295	'potential temperature'
3296	CALL message( 'netcdf_data_input_mod', 'PA0544', 1, 2, 0, 6, 0 )
3297	ENDIF
3298	ENDIF
3299	!
3300	!-- Read mixing ratio
3301	IF ( humidity ) THEN
3302	IF ( check_existence( var_names, 'init_atmosphere_qv' ) ) THEN
3303	!
3304	!-- Read attributes for the fill value and level-of-detail
3305	CALL get_attribute( id_dynamic, char_fill, init_3d%fill_q, &
3306	.FALSE., 'init_atmosphere_qv' )
3307	CALL get_attribute( id_dynamic, char_lod, init_3d%lod_q, &
3308	.FALSE., 'init_atmosphere_qv' )
3309	!
3310	!-- level-of-detail 1 - read initialization profile
3311	IF ( init_3d%lod_q == 1 ) THEN
3312	ALLOCATE( init_3d%q_init(nzb:nzt+1) )
3313
3314	CALL get_variable( id_dynamic, 'init_atmosphere_qv', &
3315	init_3d%q_init(nzb+1:nzt) )
3316	!
3317	!-- Set bottom and top boundary condition (Neumann)
3318	init_3d%q_init(nzb) = init_3d%q_init(nzb+1)
3319	init_3d%q_init(nzt+1) = init_3d%q_init(nzt)
3320	!
3321	!-- level-of-detail 2 - read 3D initialization data
3322	ELSEIF ( init_3d%lod_q == 2 ) THEN
3323
3324	CALL get_variable( id_dynamic, 'init_atmosphere_qv', &
3325	q(nzb+1:nzt,nys:nyn,nxl:nxr), &
3326	nxl+1, nys+1, nzb+1, &
3327	nxr-nxl+1, nyn-nys+1, init_3d%nzu, &
3328	dynamic_3d )
3329
3330	!
3331	!-- Set bottom and top-boundary
3332	q(nzb,:,:) = q(nzb+1,:,:)
3333	q(nzt+1,:,:) = q(nzt,:,:)
3334
3335	ENDIF
3336	init_3d%from_file_q = .TRUE.
3337	ELSE
3338	message_string = 'Missing initial data for ' // &
3339	'mixing ratio'
3340	CALL message( 'netcdf_data_input_mod', 'PA0544', 1, 2, 0, 6, 0 )
3341	ENDIF
3342	ENDIF
3343	!
3344	!-- Close input file
3345	CALL close_input_file( id_dynamic )
3346	#endif
3347	!
3348	!-- End of CPU measurement
3349	CALL cpu_log( log_point_s(85), 'NetCDF input init', 'stop' )
3350	!
3351	!-- Finally, check if the input data has any fill values. Please note,
3352	!-- checks depend on the LOD of the input data.
3353	IF ( init_3d%from_file_u ) THEN
3354	check_passed = .TRUE.
3355	IF ( init_3d%lod_u == 1 ) THEN
3356	IF ( ANY( init_3d%u_init(nzb+1:nzt+1) == init_3d%fill_u ) ) &
3357	check_passed = .FALSE.
3358	ELSEIF ( init_3d%lod_u == 2 ) THEN
3359	IF ( ANY( u(nzb+1:nzt+1,nys:nyn,nxlu:nxr) == init_3d%fill_u ) ) &
3360	check_passed = .FALSE.
3361	ENDIF
3362	IF ( .NOT. check_passed ) THEN
3363	message_string = 'NetCDF input for init_atmosphere_u must ' // &
3364	'not contain any _FillValues'
3365	CALL message( 'netcdf_data_input_mod', 'PA0545', 2, 2, 0, 6, 0 )
3366	ENDIF
3367	ENDIF
3368
3369	IF ( init_3d%from_file_v ) THEN
3370	check_passed = .TRUE.
3371	IF ( init_3d%lod_v == 1 ) THEN
3372	IF ( ANY( init_3d%v_init(nzb+1:nzt+1) == init_3d%fill_v ) ) &
3373	check_passed = .FALSE.
3374	ELSEIF ( init_3d%lod_v == 2 ) THEN
3375	IF ( ANY( v(nzb+1:nzt+1,nysv:nyn,nxl:nxr) == init_3d%fill_v ) ) &
3376	check_passed = .FALSE.
3377	ENDIF
3378	IF ( .NOT. check_passed ) THEN
3379	message_string = 'NetCDF input for init_atmosphere_v must ' // &
3380	'not contain any _FillValues'
3381	CALL message( 'netcdf_data_input_mod', 'PA0545', 2, 2, 0, 6, 0 )
3382	ENDIF
3383	ENDIF
3384
3385	IF ( init_3d%from_file_w ) THEN
3386	check_passed = .TRUE.
3387	IF ( init_3d%lod_w == 1 ) THEN
3388	IF ( ANY( init_3d%w_init(nzb+1:nzt) == init_3d%fill_w ) ) &
3389	check_passed = .FALSE.
3390	ELSEIF ( init_3d%lod_w == 2 ) THEN
3391	IF ( ANY( w(nzb+1:nzt,nys:nyn,nxl:nxr) == init_3d%fill_w ) ) &
3392	check_passed = .FALSE.
3393	ENDIF
3394	IF ( .NOT. check_passed ) THEN
3395	message_string = 'NetCDF input for init_atmosphere_w must ' // &
3396	'not contain any _FillValues'
3397	CALL message( 'netcdf_data_input_mod', 'PA0545', 2, 2, 0, 6, 0 )
3398	ENDIF
3399	ENDIF
3400
3401	IF ( init_3d%from_file_pt ) THEN
3402	check_passed = .TRUE.
3403	IF ( init_3d%lod_pt == 1 ) THEN
3404	IF ( ANY( init_3d%pt_init(nzb+1:nzt+1) == init_3d%fill_pt ) ) &
3405	check_passed = .FALSE.
3406	ELSEIF ( init_3d%lod_pt == 2 ) THEN
3407	IF ( ANY( pt(nzb+1:nzt+1,nys:nyn,nxl:nxr) == init_3d%fill_pt ) ) &
3408	check_passed = .FALSE.
3409	ENDIF
3410	IF ( .NOT. check_passed ) THEN
3411	message_string = 'NetCDF input for init_atmosphere_pt must ' // &
3412	'not contain any _FillValues'
3413	CALL message( 'netcdf_data_input_mod', 'PA0545', 2, 2, 0, 6, 0 )
3414	ENDIF
3415	ENDIF
3416
3417	IF ( init_3d%from_file_q ) THEN
3418	check_passed = .TRUE.
3419	IF ( init_3d%lod_q == 1 ) THEN
3420	IF ( ANY( init_3d%q_init(nzb+1:nzt+1) == init_3d%fill_q ) ) &
3421	check_passed = .FALSE.
3422	ELSEIF ( init_3d%lod_q == 2 ) THEN
3423	IF ( ANY( q(nzb+1:nzt+1,nys:nyn,nxl:nxr) == init_3d%fill_q ) ) &
3424	check_passed = .FALSE.
3425	ENDIF
3426	IF ( .NOT. check_passed ) THEN
3427	message_string = 'NetCDF input for init_atmosphere_q must ' // &
3428	'not contain any _FillValues'
3429	CALL message( 'netcdf_data_input_mod', 'PA0545', 2, 2, 0, 6, 0 )
3430	ENDIF
3431	ENDIF
3432	!
3433	!-- Workaround for cyclic conditions. Please see above for further explanation.
3434	IF ( bc_lr_cyc .AND. nxl == 0 ) nxlu = nxl
3435	IF ( bc_ns_cyc .AND. nys == 0 ) nysv = nys
3436
3437	END SUBROUTINE netcdf_data_input_init_3d
3438
3439	!------------------------------------------------------------------------------!
3440	! Description:
3441	! ------------
3442	!> Reads initialization data of u, v, w, pt, q, geostrophic wind components,
3443	!> as well as soil moisture and soil temperature, derived from larger-scale
3444	!> model (COSMO) by Inifor.
3445	!------------------------------------------------------------------------------!
3446	SUBROUTINE netcdf_data_input_init_lsm
3447
3448	USE control_parameters, &
3449	ONLY: message_string
3450
3451	USE indices, &
3452	ONLY: nx, nxl, nxr, ny, nyn, nys
3453
3454	IMPLICIT NONE
3455
3456	CHARACTER(LEN=100), DIMENSION(:), ALLOCATABLE :: var_names
3457
3458	INTEGER(iwp) :: id_dynamic !< NetCDF id of dynamic input file
3459	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
3460
3461	!
3462	!-- Skip routine if no input file with dynamic input data is available.
3463	IF ( .NOT. input_pids_dynamic ) RETURN
3464	!
3465	!-- CPU measurement
3466	CALL cpu_log( log_point_s(85), 'NetCDF input init', 'start' )
3467
3468	#if defined ( __netcdf )
3469	!
3470	!-- Open file in read-only mode
3471	CALL open_read_file( TRIM( input_file_dynamic ) // &
3472	TRIM( coupling_char ), id_dynamic )
3473
3474	!
3475	!-- At first, inquire all variable names.
3476	CALL inquire_num_variables( id_dynamic, num_vars )
3477	!
3478	!-- Allocate memory to store variable names.
3479	ALLOCATE( var_names(1:num_vars) )
3480	CALL inquire_variable_names( id_dynamic, var_names )
3481	!
3482	!-- Read vertical dimension for soil depth.
3483	IF ( check_existence( var_names, 'zsoil' ) ) &
3484	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nzs,&
3485	'zsoil' )
3486	!
3487	!-- Read also the horizontal dimensions required for soil initialization.
3488	!-- Please note, in case of non-nested runs or in case of root domain,
3489	!-- these data is already available, but will be read again for the sake
3490	!-- of clearness.
3491	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%nx, &
3492	'x' )
3493	CALL netcdf_data_input_get_dimension_length( id_dynamic, init_3d%ny, &
3494	'y' )
3495	!
3496	!-- Check for correct horizontal and vertical dimension. Please note,
3497	!-- in case of non-nested runs or in case of root domain, these checks
3498	!-- are already performed
3499	IF ( init_3d%nx-1 /= nx .OR. init_3d%ny-1 /= ny ) THEN
3500	message_string = 'Number of inifor horizontal grid points '// &
3501	'does not match the number of numeric grid points.'
3502	CALL message( 'netcdf_data_input_mod', 'PA0543', 1, 2, 0, 6, 0 )
3503	ENDIF
3504	!
3505	!-- Read vertical dimensions. Later, these are required for eventual
3506	!-- inter- and extrapolations of the initialization data.
3507	IF ( check_existence( var_names, 'zsoil' ) ) THEN
3508	ALLOCATE( init_3d%z_soil(1:init_3d%nzs) )
3509	CALL get_variable( id_dynamic, 'zsoil', init_3d%z_soil )
3510	ENDIF
3511	!
3512	!-- Read initial data for soil moisture
3513	IF ( check_existence( var_names, 'init_soil_m' ) ) THEN
3514	!
3515	!-- Read attributes for the fill value and level-of-detail
3516	CALL get_attribute( id_dynamic, char_fill, &
3517	init_3d%fill_msoil, &
3518	.FALSE., 'init_soil_m' )
3519	CALL get_attribute( id_dynamic, char_lod, &
3520	init_3d%lod_msoil, &
3521	.FALSE., 'init_soil_m' )
3522	!
3523	!-- level-of-detail 1 - read initialization profile
3524	IF ( init_3d%lod_msoil == 1 ) THEN
3525	ALLOCATE( init_3d%msoil_1d(0:init_3d%nzs-1) )
3526
3527	CALL get_variable( id_dynamic, 'init_soil_m', &
3528	init_3d%msoil_1d(0:init_3d%nzs-1) )
3529	!
3530	!-- level-of-detail 2 - read 3D initialization data
3531	ELSEIF ( init_3d%lod_msoil == 2 ) THEN
3532	ALLOCATE ( init_3d%msoil_3d(0:init_3d%nzs-1,nys:nyn,nxl:nxr) )
3533
3534	CALL get_variable( id_dynamic, 'init_soil_m', &
3535	init_3d%msoil_3d(0:init_3d%nzs-1,nys:nyn,nxl:nxr),&
3536	nxl, nxr, nys, nyn, 0, init_3d%nzs-1 )
3537
3538	ENDIF
3539	init_3d%from_file_msoil = .TRUE.
3540	ENDIF
3541	!
3542	!-- Read soil temperature
3543	IF ( check_existence( var_names, 'init_soil_t' ) ) THEN
3544	!
3545	!-- Read attributes for the fill value and level-of-detail
3546	CALL get_attribute( id_dynamic, char_fill, &
3547	init_3d%fill_tsoil, &
3548	.FALSE., 'init_soil_t' )
3549	CALL get_attribute( id_dynamic, char_lod, &
3550	init_3d%lod_tsoil, &
3551	.FALSE., 'init_soil_t' )
3552	!
3553	!-- level-of-detail 1 - read initialization profile
3554	IF ( init_3d%lod_tsoil == 1 ) THEN
3555	ALLOCATE( init_3d%tsoil_1d(0:init_3d%nzs-1) )
3556
3557	CALL get_variable( id_dynamic, 'init_soil_t', &
3558	init_3d%tsoil_1d(0:init_3d%nzs-1) )
3559
3560	!
3561	!-- level-of-detail 2 - read 3D initialization data
3562	ELSEIF ( init_3d%lod_tsoil == 2 ) THEN
3563	ALLOCATE ( init_3d%tsoil_3d(0:init_3d%nzs-1,nys:nyn,nxl:nxr) )
3564
3565	CALL get_variable( id_dynamic, 'init_soil_t', &
3566	init_3d%tsoil_3d(0:init_3d%nzs-1,nys:nyn,nxl:nxr),&
3567	nxl, nxr, nys, nyn, 0, init_3d%nzs-1 )
3568	ENDIF
3569	init_3d%from_file_tsoil = .TRUE.
3570	ENDIF
3571	!
3572	!-- Close input file
3573	CALL close_input_file( id_dynamic )
3574	#endif
3575	!
3576	!-- End of CPU measurement
3577	CALL cpu_log( log_point_s(85), 'NetCDF input init', 'stop' )
3578
3579	END SUBROUTINE netcdf_data_input_init_lsm
3580
3581	!------------------------------------------------------------------------------!
3582	! Description:
3583	! ------------
3584	!> Reads data at lateral and top boundaries derived from larger-scale model
3585	!> (COSMO) by Inifor.
3586	!------------------------------------------------------------------------------!
3587	SUBROUTINE netcdf_data_input_offline_nesting
3588
3589	USE control_parameters, &
3590	ONLY: bc_dirichlet_l, bc_dirichlet_n, bc_dirichlet_r, &
3591	bc_dirichlet_s, humidity, neutral, nesting_offline, &
3592	time_since_reference_point
3593
3594	USE indices, &
3595	ONLY: nxl, nxlu, nxr, nyn, nys, nysv, nzb, nzt
3596
3597	IMPLICIT NONE
3598
3599	INTEGER(iwp) :: id_dynamic !< NetCDF id of dynamic input file
3600	INTEGER(iwp) :: num_vars !< number of variables in netcdf input file
3601	INTEGER(iwp) :: t !< running index time dimension
3602
3603	nest_offl%from_file = MERGE( .TRUE., .FALSE., input_pids_dynamic )
3604	!
3605	!-- Skip input if no forcing from larger-scale models is applied.
3606	IF ( .NOT. nesting_offline ) RETURN
3607
3608	!
3609	!-- CPU measurement
3610	CALL cpu_log( log_point_s(86), 'NetCDF input forcing', 'start' )
3611
3612	#if defined ( __netcdf )
3613	!
3614	!-- Open file in read-only mode
3615	CALL open_read_file( TRIM( input_file_dynamic ) // &
3616	TRIM( coupling_char ), id_dynamic )
3617	!
3618	!-- Initialize INIFOR forcing.
3619	IF ( .NOT. nest_offl%init ) THEN
3620	!
3621	!-- At first, inquire all variable names.
3622	CALL inquire_num_variables( id_dynamic, num_vars )
3623	!
3624	!-- Allocate memory to store variable names.
3625	ALLOCATE( nest_offl%var_names(1:num_vars) )
3626	CALL inquire_variable_names( id_dynamic, nest_offl%var_names )
3627	!
3628	!-- Read time dimension, allocate memory and finally read time array
3629	CALL netcdf_data_input_get_dimension_length( id_dynamic, &
3630	nest_offl%nt, 'time' )
3631
3632	IF ( check_existence( nest_offl%var_names, 'time' ) ) THEN
3633	ALLOCATE( nest_offl%time(0:nest_offl%nt-1) )
3634	CALL get_variable( id_dynamic, 'time', nest_offl%time )
3635	ENDIF
3636	!
3637	!-- Read vertical dimension of scalar und w grid
3638	CALL netcdf_data_input_get_dimension_length( id_dynamic, &
3639	nest_offl%nzu, 'z' )
3640	CALL netcdf_data_input_get_dimension_length( id_dynamic, &
3641	nest_offl%nzw, 'zw' )
3642
3643	IF ( check_existence( nest_offl%var_names, 'z' ) ) THEN
3644	ALLOCATE( nest_offl%zu_atmos(1:nest_offl%nzu) )
3645	CALL get_variable( id_dynamic, 'z', nest_offl%zu_atmos )
3646	ENDIF
3647	IF ( check_existence( nest_offl%var_names, 'zw' ) ) THEN
3648	ALLOCATE( nest_offl%zw_atmos(1:nest_offl%nzw) )
3649	CALL get_variable( id_dynamic, 'zw', nest_offl%zw_atmos )
3650	ENDIF
3651
3652	!
3653	!-- Read surface pressure
3654	IF ( check_existence( nest_offl%var_names, &
3655	'surface_forcing_surface_pressure' ) ) THEN
3656	ALLOCATE( nest_offl%surface_pressure(0:nest_offl%nt-1) )
3657	CALL get_variable( id_dynamic, &
3658	'surface_forcing_surface_pressure', &
3659	nest_offl%surface_pressure )
3660	ENDIF
3661	!
3662	!-- Set control flag to indicate that initialization is already done
3663	nest_offl%init = .TRUE.
3664
3665	ENDIF
3666
3667	!
3668	!-- Obtain time index for current input starting at 0.
3669	!-- @todo: At the moment INIFOR and simulated time correspond
3670	!-- to each other. If required, adjust to daytime.
3671	nest_offl%tind = MINLOC( ABS( nest_offl%time - &
3672	time_since_reference_point ), DIM = 1 ) &
3673	- 1
3674	nest_offl%tind_p = nest_offl%tind + 1
3675	!
3676	!-- Read geostrophic wind components
3677	DO t = nest_offl%tind, nest_offl%tind_p
3678	CALL get_variable_pr( id_dynamic, 'ls_forcing_ug', t+1, &
3679	nest_offl%ug(t-nest_offl%tind,nzb+1:nzt) )
3680	CALL get_variable_pr( id_dynamic, 'ls_forcing_vg', t+1, &
3681	nest_offl%vg(t-nest_offl%tind,nzb+1:nzt) )
3682	ENDDO
3683	!
3684	!-- Read data at lateral and top boundaries. Please note, at left and
3685	!-- right domain boundary, yz-layers are read for u, v, w, pt and q.
3686	!-- For the v-component, the data starts at nysv, while for the other
3687	!-- quantities the data starts at nys. This is equivalent at the north
3688	!-- and south domain boundary for the u-component.
3689	!-- Further, lateral data is not accessed by parallel IO, indicated by the
3690	!-- last passed flag in the subroutine get_variable(). This is because
3691	!-- not every PE participates in this collective blocking read operation.
3692	IF ( bc_dirichlet_l ) THEN
3693	CALL get_variable( id_dynamic, 'ls_forcing_left_u', &
3694	nest_offl%u_left(0:1,nzb+1:nzt,nys:nyn), &
3695	nys+1, nzb+1, nest_offl%tind+1, &
3696	nyn-nys+1, nest_offl%nzu, 2, .FALSE. )
3697
3698	CALL get_variable( id_dynamic, 'ls_forcing_left_v', &
3699	nest_offl%v_left(0:1,nzb+1:nzt,nysv:nyn), &
3700	nysv, nzb+1, nest_offl%tind+1, &
3701	nyn-nysv+1, nest_offl%nzu, 2, .FALSE. )
3702
3703	CALL get_variable( id_dynamic, 'ls_forcing_left_w', &
3704	nest_offl%w_left(0:1,nzb+1:nzt-1,nys:nyn), &
3705	nys+1, nzb+1, nest_offl%tind+1, &
3706	nyn-nys+1, nest_offl%nzw, 2, .FALSE. )
3707
3708	IF ( .NOT. neutral ) THEN
3709	CALL get_variable( id_dynamic, 'ls_forcing_left_pt', &
3710	nest_offl%pt_left(0:1,nzb+1:nzt,nys:nyn), &
3711	nys+1, nzb+1, nest_offl%tind+1, &
3712	nyn-nys+1, nest_offl%nzu, 2, .FALSE. )
3713	ENDIF
3714
3715	IF ( humidity ) THEN
3716	CALL get_variable( id_dynamic, 'ls_forcing_left_qv', &
3717	nest_offl%q_left(0:1,nzb+1:nzt,nys:nyn), &
3718	nys+1, nzb+1, nest_offl%tind+1, &
3719	nyn-nys+1, nest_offl%nzu, 2, .FALSE. )
3720	ENDIF
3721
3722	ENDIF
3723
3724	IF ( bc_dirichlet_r ) THEN
3725	CALL get_variable( id_dynamic, 'ls_forcing_right_u', &
3726	nest_offl%u_right(0:1,nzb+1:nzt,nys:nyn), &
3727	nys+1, nzb+1, nest_offl%tind+1, &
3728	nyn-nys+1, nest_offl%nzu, 2, .FALSE. )
3729
3730	CALL get_variable( id_dynamic, 'ls_forcing_right_v', &
3731	nest_offl%v_right(0:1,nzb+1:nzt,nysv:nyn), &
3732	nysv, nzb+1, nest_offl%tind+1, &
3733	nyn-nysv+1, nest_offl%nzu, 2, .FALSE. )
3734
3735	CALL get_variable( id_dynamic, 'ls_forcing_right_w', &
3736	nest_offl%w_right(0:1,nzb+1:nzt-1,nys:nyn), &
3737	nys+1, nzb+1, nest_offl%tind+1, &
3738	nyn-nys+1, nest_offl%nzw, 2, .FALSE. )
3739
3740	IF ( .NOT. neutral ) THEN
3741	CALL get_variable( id_dynamic, 'ls_forcing_right_pt', &
3742	nest_offl%pt_right(0:1,nzb+1:nzt,nys:nyn), &
3743	nys+1, nzb+1, nest_offl%tind+1, &
3744	nyn-nys+1, nest_offl%nzu, 2, .FALSE. )
3745	ENDIF
3746	IF ( humidity ) THEN
3747	CALL get_variable( id_dynamic, 'ls_forcing_right_qv', &
3748	nest_offl%q_right(0:1,nzb+1:nzt,nys:nyn), &
3749	nys+1, nzb+1, nest_offl%tind+1, &
3750	nyn-nys+1, nest_offl%nzu, 2, .FALSE. )
3751	ENDIF
3752	ENDIF
3753
3754	IF ( bc_dirichlet_n ) THEN
3755
3756	CALL get_variable( id_dynamic, 'ls_forcing_north_u', &
3757	nest_offl%u_north(0:1,nzb+1:nzt,nxlu:nxr), &
3758	nxlu, nzb+1, nest_offl%tind+1, &
3759	nxr-nxlu+1, nest_offl%nzu, 2, .FALSE. )
3760
3761	CALL get_variable( id_dynamic, 'ls_forcing_north_v', &
3762	nest_offl%v_north(0:1,nzb+1:nzt,nxl:nxr), &
3763	nxl+1, nzb+1, nest_offl%tind+1, &
3764	nxr-nxl+1, nest_offl%nzu, 2, .FALSE. )
3765
3766	CALL get_variable( id_dynamic, 'ls_forcing_north_w', &
3767	nest_offl%w_north(0:1,nzb+1:nzt-1,nxl:nxr), &
3768	nxl+1, nzb+1, nest_offl%tind+1, &
3769	nxr-nxl+1, nest_offl%nzw, 2, .FALSE. )
3770
3771	IF ( .NOT. neutral ) THEN
3772	CALL get_variable( id_dynamic, 'ls_forcing_north_pt', &
3773	nest_offl%pt_north(0:1,nzb+1:nzt,nxl:nxr), &
3774	nxl+1, nzb+1, nest_offl%tind+1, &
3775	nxr-nxl+1, nest_offl%nzu, 2, .FALSE. )
3776	ENDIF
3777	IF ( humidity ) THEN
3778	CALL get_variable( id_dynamic, 'ls_forcing_north_qv', &
3779	nest_offl%q_north(0:1,nzb+1:nzt,nxl:nxr), &
3780	nxl+1, nzb+1, nest_offl%tind+1, &
3781	nxr-nxl+1, nest_offl%nzu, 2, .FALSE. )
3782	ENDIF
3783	ENDIF
3784
3785	IF ( bc_dirichlet_s ) THEN
3786	CALL get_variable( id_dynamic, 'ls_forcing_south_u', &
3787	nest_offl%u_south(0:1,nzb+1:nzt,nxlu:nxr), &
3788	nxlu, nzb+1, nest_offl%tind+1, &
3789	nxr-nxlu+1, nest_offl%nzu, 2, .FALSE. )
3790
3791	CALL get_variable( id_dynamic, 'ls_forcing_south_v', &
3792	nest_offl%v_south(0:1,nzb+1:nzt,nxl:nxr), &
3793	nxl+1, nzb+1, nest_offl%tind+1, &
3794	nxr-nxl+1, nest_offl%nzu, 2, .FALSE. )
3795
3796	CALL get_variable( id_dynamic, 'ls_forcing_south_w', &
3797	nest_offl%w_south(0:1,nzb+1:nzt-1,nxl:nxr), &
3798	nxl+1, nzb+1, nest_offl%tind+1, &
3799	nxr-nxl+1, nest_offl%nzw, 2, .FALSE. )
3800
3801	IF ( .NOT. neutral ) THEN
3802	CALL get_variable( id_dynamic, 'ls_forcing_south_pt', &
3803	nest_offl%pt_south(0:1,nzb+1:nzt,nxl:nxr), &
3804	nxl+1, nzb+1, nest_offl%tind+1, &
3805	nxr-nxl+1, nest_offl%nzu, 2, .FALSE. )
3806	ENDIF
3807	IF ( humidity ) THEN
3808	CALL get_variable( id_dynamic, 'ls_forcing_south_qv', &
3809	nest_offl%q_south(0:1,nzb+1:nzt,nxl:nxr), &
3810	nxl+1, nzb+1, nest_offl%tind+1, &
3811	nxr-nxl+1, nest_offl%nzu, 2, .FALSE. )
3812	ENDIF
3813	ENDIF
3814
3815	!
3816	!-- Top boundary
3817	CALL get_variable( id_dynamic, 'ls_forcing_top_u', &
3818	nest_offl%u_top(0:1,nys:nyn,nxlu:nxr), &
3819	nxlu, nys+1, nest_offl%tind+1, &
3820	nxr-nxlu+1, nyn-nys+1, 2, .TRUE. )
3821
3822	CALL get_variable( id_dynamic, 'ls_forcing_top_v', &
3823	nest_offl%v_top(0:1,nysv:nyn,nxl:nxr), &
3824	nxl+1, nysv, nest_offl%tind+1, &
3825	nxr-nxl+1, nyn-nysv+1, 2, .TRUE. )
3826
3827	CALL get_variable( id_dynamic, 'ls_forcing_top_w', &
3828	nest_offl%w_top(0:1,nys:nyn,nxl:nxr), &
3829	nxl+1, nys+1, nest_offl%tind+1, &
3830	nxr-nxl+1, nyn-nys+1, 2, .TRUE. )
3831
3832	IF ( .NOT. neutral ) THEN
3833	CALL get_variable( id_dynamic, 'ls_forcing_top_pt', &
3834	nest_offl%pt_top(0:1,nys:nyn,nxl:nxr), &
3835	nxl+1, nys+1, nest_offl%tind+1, &
3836	nxr-nxl+1, nyn-nys+1, 2, .TRUE. )
3837	ENDIF
3838	IF ( humidity ) THEN
3839	CALL get_variable( id_dynamic, 'ls_forcing_top_qv', &
3840	nest_offl%q_top(0:1,nys:nyn,nxl:nxr), &
3841	nxl+1, nys+1, nest_offl%tind+1, &
3842	nxr-nxl+1, nyn-nys+1, 2, .TRUE. )
3843	ENDIF
3844
3845	!
3846	!-- Close input file
3847	CALL close_input_file( id_dynamic )
3848	#endif
3849	!
3850	!-- End of CPU measurement
3851	CALL cpu_log( log_point_s(86), 'NetCDF input forcing', 'stop' )
3852
3853	END SUBROUTINE netcdf_data_input_offline_nesting
3854
3855
3856	!------------------------------------------------------------------------------!
3857	! Description:
3858	! ------------
3859	!> Checks input file for consistency and minimum requirements.
3860	!------------------------------------------------------------------------------!
3861	SUBROUTINE netcdf_data_input_check_dynamic
3862
3863	USE control_parameters, &
3864	ONLY: initializing_actions, message_string, nesting_offline
3865
3866	IMPLICIT NONE
3867
3868	!
3869	!-- In case of forcing, check whether dynamic input file is present
3870	IF ( .NOT. input_pids_dynamic .AND. nesting_offline ) THEN
3871	message_string = 'nesting_offline = .TRUE. requires dynamic ' // &
3872	'input file ' // &
3873	TRIM( input_file_dynamic ) // TRIM( coupling_char )
3874	CALL message( 'netcdf_data_input_mod', 'PA0546', 1, 2, 0, 6, 0 )
3875	ENDIF
3876	!
3877	!-- Dynamic input file must also be present if initialization via inifor is
3878	!-- prescribed.
3879	IF ( .NOT. input_pids_dynamic .AND. &
3880	TRIM( initializing_actions ) == 'inifor' ) THEN
3881	message_string = 'initializing_actions = inifor requires dynamic ' //&
3882	'input file ' // TRIM( input_file_dynamic ) // &
3883	TRIM( coupling_char )
3884	CALL message( 'netcdf_data_input_mod', 'PA0547', 1, 2, 0, 6, 0 )
3885	ENDIF
3886
3887	END SUBROUTINE netcdf_data_input_check_dynamic
3888
3889	!------------------------------------------------------------------------------!
3890	! Description:
3891	! ------------
3892	!> Checks input file for consistency and minimum requirements.
3893	!------------------------------------------------------------------------------!
3894	SUBROUTINE netcdf_data_input_check_static
3895
3896	USE arrays_3d, &
3897	ONLY: zu
3898
3899	USE control_parameters, &
3900	ONLY: land_surface, message_string, urban_surface
3901
3902	USE grid_variables, &
3903	ONLY: dx, dy
3904
3905	USE indices, &
3906	ONLY: nx, nxl, nxr, ny, nyn, nys
3907
3908	IMPLICIT NONE
3909
3910	INTEGER(iwp) :: i !< loop index along x-direction
3911	INTEGER(iwp) :: j !< loop index along y-direction
3912	INTEGER(iwp) :: n_surf !< number of different surface types at given location
3913
3914	LOGICAL :: check_passed !< flag indicating if a check passed
3915
3916	!
3917	!-- Return if no static input file is available
3918	IF ( .NOT. input_pids_static ) RETURN
3919	!
3920	!-- Check whether dimension size in input file matches the model dimensions
3921	IF ( dim_static%nx-1 /= nx .OR. dim_static%ny-1 /= ny ) THEN
3922	message_string = 'Static input file: horizontal dimension in ' // &
3923	'x- and/or y-direction ' // &
3924	'do not match the respective model dimension'
3925	CALL message( 'netcdf_data_input_mod', 'PA0548', 1, 2, 0, 6, 0 )
3926	ENDIF
3927	!
3928	!-- Check if grid spacing of provided input data matches the respective
3929	!-- grid spacing in the model.
3930	IF ( ABS( dim_static%x(1) - dim_static%x(0) - dx ) > 10E-6_wp .OR. &
3931	ABS( dim_static%y(1) - dim_static%y(0) - dy ) > 10E-6_wp ) THEN
3932	message_string = 'Static input file: horizontal grid spacing ' // &
3933	'in x- and/or y-direction ' // &
3934	'do not match the respective model grid spacing.'
3935	CALL message( 'netcdf_data_input_mod', 'PA0549', 1, 2, 0, 6, 0 )
3936	ENDIF
3937	!
3938	!-- Check for correct dimension of surface_fractions, should run from 0-2.
3939	IF ( surface_fraction_f%from_file ) THEN
3940	IF ( surface_fraction_f%nf-1 > 2 ) THEN
3941	message_string = 'nsurface_fraction must not be larger than 3.'
3942	CALL message( 'netcdf_data_input_mod', 'PA0580', 1, 2, 0, 6, 0 )
3943	ENDIF
3944	ENDIF
3945	!
3946	!-- Check orography for fill-values. For the moment, give an error message.
3947	!-- More advanced methods, e.g. a nearest neighbor algorithm as used in GIS
3948	!-- systems might be implemented later.
3949	!-- Please note, if no terrain height is provided, it is set to 0.
3950	IF ( ANY( terrain_height_f%var == terrain_height_f%fill ) ) THEN
3951	message_string = 'NetCDF variable zt is not ' // &
3952	'allowed to have missing data'
3953	CALL message( 'netcdf_data_input_mod', 'PA0550', 2, 2, myid, 6, 0 )
3954	ENDIF
3955	!
3956	!-- Check for negative terrain heights
3957	IF ( ANY( terrain_height_f%var < 0.0_wp ) ) THEN
3958	message_string = 'NetCDF variable zt is not ' // &
3959	'allowed to have negative values'
3960	CALL message( 'netcdf_data_input_mod', 'PA0551', 2, 2, myid, 6, 0 )
3961	ENDIF
3962	!
3963	!-- If 3D buildings are read, check if building information is consistent
3964	!-- to numeric grid.
3965	IF ( buildings_f%from_file ) THEN
3966	IF ( buildings_f%lod == 2 ) THEN
3967	IF ( buildings_f%nz > SIZE( zu ) ) THEN
3968	message_string = 'Reading 3D building data - too much ' // &
3969	'data points along the vertical coordinate.'
3970	CALL message( 'netcdf_data_input_mod', 'PA0552', 2, 2, 0, 6, 0 )
3971	ENDIF
3972
3973	IF ( ANY( ABS( buildings_f%z(0:buildings_f%nz-1) - &
3974	zu(0:buildings_f%nz-1) ) > 1E-6_wp ) ) THEN
3975	message_string = 'Reading 3D building data - vertical ' // &
3976	'coordinate do not match numeric grid.'
3977	CALL message( 'netcdf_data_input_mod', 'PA0553', 2, 2, myid, 6, 0 )
3978	ENDIF
3979	ENDIF
3980	ENDIF
3981
3982	!
3983	!-- Skip further checks concerning buildings and natural surface properties
3984	!-- if no urban surface and land surface model are applied.
3985	IF ( .NOT. land_surface .AND. .NOT. urban_surface ) RETURN
3986	!
3987	!-- Check for minimum requirement of surface-classification data in case
3988	!-- static input file is used.
3989	IF ( ( .NOT. vegetation_type_f%from_file .OR. &
3990	.NOT. pavement_type_f%from_file .OR. &
3991	.NOT. water_type_f%from_file .OR. &
3992	.NOT. soil_type_f%from_file ) .OR. &
3993	( urban_surface .AND. .NOT. building_type_f%from_file ) ) THEN
3994	message_string = 'Minimum requirement for surface classification ' //&
3995	'is not fulfilled. At least ' // &
3996	'vegetation_type, pavement_type, ' // &
3997	'soil_type and water_type are '// &
3998	'required. If urban-surface model is applied, ' // &
3999	'also building_type ist required'
4000	CALL message( 'netcdf_data_input_mod', 'PA0554', 1, 2, 0, 6, 0 )
4001	ENDIF
4002	!
4003	!-- Check for general availability of input variables.
4004	!-- If vegetation_type is 0 at any location, vegetation_pars as well as
4005	!-- root_area_dens_s are required.
4006	IF ( vegetation_type_f%from_file ) THEN
4007	IF ( ANY( vegetation_type_f%var == 0 ) ) THEN
4008	IF ( .NOT. vegetation_pars_f%from_file ) THEN
4009	message_string = 'If vegetation_type = 0 at any location, ' // &
4010	'vegetation_pars is required'
4011	CALL message( 'netcdf_data_input_mod', 'PA0555', 2, 2, -1, 6, 0 )
4012	ENDIF
4013	IF ( .NOT. root_area_density_lsm_f%from_file ) THEN
4014	message_string = 'If vegetation_type = 0 at any location, ' // &
4015	'root_area_dens_s is required'
4016	CALL message( 'netcdf_data_input_mod', 'PA0556', 2, 2, myid, 6, 0 )
4017	ENDIF
4018	ENDIF
4019	ENDIF
4020	!
4021	!-- If soil_type is zero at any location, soil_pars is required.
4022	IF ( soil_type_f%from_file ) THEN
4023	check_passed = .TRUE.
4024	IF ( ALLOCATED( soil_type_f%var_2d ) ) THEN
4025	IF ( ANY( soil_type_f%var_2d == 0 ) ) THEN
4026	IF ( .NOT. soil_pars_f%from_file ) check_passed = .FALSE.
4027	ENDIF
4028	ELSE
4029	IF ( ANY( soil_type_f%var_3d == 0 ) ) THEN
4030	IF ( .NOT. soil_pars_f%from_file ) check_passed = .FALSE.
4031	ENDIF
4032	ENDIF
4033	IF ( .NOT. check_passed ) THEN
4034	message_string = 'If soil_type = 0 at any location, ' // &
4035	'soil_pars is required'
4036	CALL message( 'netcdf_data_input_mod', 'PA0557', 2, 2, myid, 6, 0 )
4037	ENDIF
4038	ENDIF
4039	!
4040	!-- If building_type is zero at any location, building_pars is required.
4041	IF ( building_type_f%from_file ) THEN
4042	IF ( ANY( building_type_f%var == 0 ) ) THEN
4043	IF ( .NOT. building_pars_f%from_file ) THEN
4044	message_string = 'If building_type = 0 at any location, ' // &
4045	'building_pars is required'
4046	CALL message( 'netcdf_data_input_mod', 'PA0558', 2, 2, myid, 6, 0 )
4047	ENDIF
4048	ENDIF
4049	ENDIF
4050	!
4051	!-- If building_type is provided, also building_id is needed
4052	IF ( building_type_f%from_file .AND. .NOT. building_id_f%from_file ) &
4053	THEN
4054	message_string = 'If building_type is provided, also building_id '// &
4055	'is required'
4056	CALL message( 'netcdf_data_input_mod', 'PA0519', 2, 2, myid, 6, 0 )
4057	ENDIF
4058	!
4059	!-- If albedo_type is zero at any location, albedo_pars is required.
4060	IF ( albedo_type_f%from_file ) THEN
4061	IF ( ANY( albedo_type_f%var == 0 ) ) THEN
4062	IF ( .NOT. albedo_pars_f%from_file ) THEN
4063	message_string = 'If albedo_type = 0 at any location, ' // &
4064	'albedo_pars is required'
4065	CALL message( 'netcdf_data_input_mod', 'PA0559', 2, 2, myid, 6, 0 )
4066	ENDIF
4067	ENDIF
4068	ENDIF
4069	!
4070	!-- If pavement_type is zero at any location, pavement_pars is required.
4071	IF ( pavement_type_f%from_file ) THEN
4072	IF ( ANY( pavement_type_f%var == 0 ) ) THEN
4073	IF ( .NOT. pavement_pars_f%from_file ) THEN
4074	message_string = 'If pavement_type = 0 at any location, ' // &
4075	'pavement_pars is required'
4076	CALL message( 'netcdf_data_input_mod', 'PA0560', 2, 2, myid, 6, 0 )
4077	ENDIF
4078	ENDIF
4079	ENDIF
4080	!
4081	!-- If pavement_type is zero at any location, also pavement_subsurface_pars
4082	!-- is required.
4083	IF ( pavement_type_f%from_file ) THEN
4084	IF ( ANY( pavement_type_f%var == 0 ) ) THEN
4085	IF ( .NOT. pavement_subsurface_pars_f%from_file ) THEN
4086	message_string = 'If pavement_type = 0 at any location, ' // &
4087	'pavement_subsurface_pars is required'
4088	CALL message( 'netcdf_data_input_mod', 'PA0561', 2, 2, myid, 6, 0 )
4089	ENDIF
4090	ENDIF
4091	ENDIF
4092	!
4093	!-- If water_type is zero at any location, water_pars is required.
4094	IF ( water_type_f%from_file ) THEN
4095	IF ( ANY( water_type_f%var == 0 ) ) THEN
4096	IF ( .NOT. water_pars_f%from_file ) THEN
4097	message_string = 'If water_type = 0 at any location, ' // &
4098	'water_pars is required'
4099	CALL message( 'netcdf_data_input_mod', 'PA0562', 2, 2,myid, 6, 0 )
4100	ENDIF
4101	ENDIF
4102	ENDIF
4103	!
4104	!-- Check for local consistency of the input data.
4105	DO i = nxl, nxr
4106	DO j = nys, nyn
4107	!
4108	!-- For each (y,x)-location at least one of the parameters
4109	!-- vegetation_type, pavement_type, building_type, or water_type
4110	!-- must be set to a nonÂmissing value.
4111	IF ( vegetation_type_f%var(j,i) == vegetation_type_f%fill .AND. &
4112	pavement_type_f%var(j,i) == pavement_type_f%fill .AND. &
4113	building_type_f%var(j,i) == building_type_f%fill .AND. &
4114	water_type_f%var(j,i) == water_type_f%fill ) THEN
4115	WRITE( message_string, * ) 'At least one of the parameters '// &
4116	'vegetation_type, pavement_type, ' // &
4117	'building_type, or water_type must be set '// &
4118	'to a non-missing value. Grid point: ', j, i
4119	CALL message( 'netcdf_data_input_mod', 'PA0563', 2, 2, myid, 6, 0 )
4120	ENDIF
4121	!
4122	!-- Note that a soil_type is required for each location (y,x) where
4123	!-- either vegetation_type or pavement_type is a nonÂmissing value.
4124	IF ( ( vegetation_type_f%var(j,i) /= vegetation_type_f%fill .OR. &
4125	pavement_type_f%var(j,i) /= pavement_type_f%fill ) ) THEN
4126	check_passed = .TRUE.
4127	IF ( ALLOCATED( soil_type_f%var_2d ) ) THEN
4128	IF ( soil_type_f%var_2d(j,i) == soil_type_f%fill ) &
4129	check_passed = .FALSE.
4130	ELSE
4131	IF ( ANY( soil_type_f%var_3d(:,j,i) == soil_type_f%fill) ) &
4132	check_passed = .FALSE.
4133	ENDIF
4134
4135	IF ( .NOT. check_passed ) THEN
4136	message_string = 'soil_type is required for each '// &
4137	'location (y,x) where vegetation_type or ' // &
4138	'pavement_type is a non-missing value.'
4139	CALL message( 'netcdf_data_input_mod', 'PA0564', &
4140	2, 2, myid, 6, 0 )
4141	ENDIF
4142	ENDIF
4143	!
4144	!-- Check for consistency of surface fraction. If more than one type
4145	!-- is set, surface fraction need to be given and the sum must not
4146	!-- be larger than 1.
4147	n_surf = 0
4148	IF ( vegetation_type_f%var(j,i) /= vegetation_type_f%fill ) &
4149	n_surf = n_surf + 1
4150	IF ( water_type_f%var(j,i) /= water_type_f%fill ) &
4151	n_surf = n_surf + 1
4152	IF ( pavement_type_f%var(j,i) /= pavement_type_f%fill ) &
4153	n_surf = n_surf + 1
4154
4155	IF ( n_surf > 1 ) THEN
4156	IF ( .NOT. surface_fraction_f%from_file ) THEN
4157	message_string = 'If more than one surface type is ' // &
4158	'given at a location, surface_fraction ' // &
4159	'must be provided.'
4160	CALL message( 'netcdf_data_input_mod', 'PA0565', &
4161	2, 2, myid, 6, 0 )
4162	ELSEIF ( ANY ( surface_fraction_f%frac(:,j,i) == &
4163	surface_fraction_f%fill ) ) THEN
4164	message_string = 'If more than one surface type is ' // &
4165	'given at a location, surface_fraction ' // &
4166	'must be provided.'
4167	CALL message( 'netcdf_data_input_mod', 'PA0565', &
4168	2, 2, myid, 6, 0 )
4169	ENDIF
4170	ENDIF
4171	!
4172	!-- Check for further mismatches. e.g. relative fractions exceed 1 or
4173	!-- vegetation_type is set but surface vegetation fraction is zero,
4174	!-- etc..
4175	IF ( surface_fraction_f%from_file ) THEN
4176	!
4177	!-- Sum of relative fractions must not exceed 1.
4178	IF ( SUM ( surface_fraction_f%frac(0:2,j,i) ) > 1.0_wp ) THEN
4179	message_string = 'surface_fraction must not exceed 1'
4180	CALL message( 'netcdf_data_input_mod', 'PA0566', &
4181	2, 2, myid, 6, 0 )
4182	ENDIF
4183	!
4184	!-- Relative fraction for a type must not be zero at locations where
4185	!-- this type is set.
4186	IF ( &
4187	( vegetation_type_f%var(j,i) /= vegetation_type_f%fill .AND.&
4188	( surface_fraction_f%frac(ind_veg_wall,j,i) == 0.0_wp .OR. &
4189	surface_fraction_f%frac(ind_veg_wall,j,i) == &
4190	surface_fraction_f%fill ) &
4191	) .OR. &
4192	( pavement_type_f%var(j,i) /= pavement_type_f%fill .AND. &
4193	( surface_fraction_f%frac(ind_pav_green,j,i) == 0.0_wp .OR. &
4194	surface_fraction_f%frac(ind_pav_green,j,i) == &
4195	surface_fraction_f%fill ) &
4196	) .OR. &
4197	( water_type_f%var(j,i) /= water_type_f%fill .AND. &
4198	( surface_fraction_f%frac(ind_wat_win,j,i) == 0.0_wp .OR. &
4199	surface_fraction_f%frac(ind_wat_win,j,i) == &
4200	surface_fraction_f%fill ) &
4201	) ) THEN
4202	WRITE( message_string, * ) 'Mismatch in setting of ' //