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init_grid.f90 @ 4878

Last change on this file since 4878 was 4868, checked in by raasch, 4 years ago
Height of level k=0 for the u,v-grid is always set 0.0
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File size: 115.8 KB

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1	!> @file init_grid.f90
2	!--------------------------------------------------------------------------------------------------!
3	! This file is part of the PALM model system.
4	!
5	! PALM is free software: you can redistribute it and/or modify it under the terms of the GNU General
6	! Public License as published by the Free Software Foundation, either version 3 of the License, or
7	! (at your option) any later version.
8	!
9	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the
10	! implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
11	! Public License for more details.
12	!
13	! You should have received a copy of the GNU General Public License along with PALM. If not, see
14	! <http://www.gnu.org/licenses/>.
15	!
16	! Copyright 1997-2021 Leibniz Universitaet Hannover
17	!--------------------------------------------------------------------------------------------------!
18	!
19	! Current revisions:
20	! -----------------
21	!
22	!
23	! Former revisions:
24	! -----------------
25	! $Id: init_grid.f90 4868 2021-02-08 10:07:43Z suehring $
26	! Height of level k=0 for the u,v-grid is always set 0.0,
27	! small changes to follow coding standard
28	!
29	! 4828 2021-01-05 11:21:41Z Giersch
30	! Bugfix in building mapping when static driver is available but no actual building is present
31	! within the model domain
32	!
33	! 4691 2020-09-22 14:38:38Z suehring
34	! Reference model topography to the lowest grid point also in ASCII input case
35	!
36	! 4653 2020-08-27 08:54:43Z pavelkrc
37	! file re-formatted to follow the PALM coding standard
38	!
39	! 4630 2020-07-30 14:54:34Z suehring
40	! In case of ASCII topography input flag grid points as terrain and building.
41	!
42	! 4601 2020-07-14 12:06:09Z suehring
43	! Minor formatting adjustments
44	!
45	! 4564 2020-06-12 14:03:36Z raasch
46	! Vertical nesting method of Huq et al. (2019) removed
47	!
48	! 4543 2020-05-20 14:12:22Z gronemeier
49	! Remove non-required check for canyon height
50	!
51	! 4507 2020-04-22 18:21:45Z gronemeier
52	! update origin_z with shifting height of orography (oro_min)
53	!
54	! 4457 2020-03-11 14:20:43Z raasch
55	! use statement for exchange horiz added,
56	! bugfix for call of exchange horiz 2d
57	!
58	! 4444 2020-03-05 15:59:50Z raasch
59	! bugfix: cpp-directives for serial mode added
60	!
61	! 4414 2020-02-19 20:16:04Z suehring
62	! - Remove deprecated topography arrays nzb_s_inner, nzb_u_inner, etc.
63	! - Move initialization of boundary conditions and multigrid into an extra module interface.
64	!
65	! 4386 2020-01-27 15:07:30Z Giersch
66	! Allocation statements, comments, naming of variables revised and _wp added to real type values
67	!
68	! 4360 2020-01-07 11:25:50Z suehring
69	! Revise error messages for generic tunnel setup.
70	!
71	! 4346 2019-12-18 11:55:56Z motisi
72	! Introduction of wall_flags_total_0, which currently sets bits based on static topography
73	! information used in wall_flags_static_0
74	!
75	! 4340 2019-12-16 08:17:03Z Giersch
76	! Topography closed channel flow with symmetric boundaries implemented
77	!
78	! 4329 2019-12-10 15:46:36Z motisi
79	! Renamed wall_flags_0 to wall_flags_static_0
80	!
81	! 4328 2019-12-09 18:53:04Z suehring
82	! Minor change in nzb_max computation. Commentation added.
83	!
84	! 4314 2019-11-29 10:29:20Z suehring
85	! Set additional topography flag 4 to mark topography grid points emerged from the filtering process.
86	!
87	! 4294 2019-11-13 18:34:16Z suehring
88	! Bugfix, always set bit 5 and 6 of wall_flags, indicating terrain- and building surfaces in all
89	! cases, in order to enable terrain-following output also when no land- or urban-surface model is
90	! applied.
91	!
92	! 4265 2019-10-15 16:16:24Z suehring
93	! Bugfix for last commit, exchange oro_max variable only when it is allocated (not necessarily the
94	! case when topography is input from ASCII file).
95	!
96	! 4245 2019-09-30 08:40:37Z pavelkrc
97	! Store oro_max (building z-offset) in 2D for building surfaces
98	!
99	! 4189 2019-08-26 16:19:38Z suehring
100	! - Add check for proper setting of namelist parameter topography
101	! - Set flag to indicate land surfaces in case no topography is provided
102	!
103	! 4182 2019-08-22 15:20:23Z scharf
104	! Corrected "Former revisions" section
105	!
106	! 4168 2019-08-16 13:50:17Z suehring
107	! Pre-calculate topography top index and store it on an array (replaces former functions
108	! get_topography_top_index)
109	!
110	! 4159 2019-08-15 13:31:35Z suehring
111	! Revision of topography processing. This was not consistent between 2D and 3D buildings.
112	!
113	! 4144 2019-08-06 09:11:47Z raasch
114	! relational operators .EQ., .NE., etc. replaced by ==, /=, etc.
115	!
116	! 4115 2019-07-24 12:50:49Z suehring
117	! Bugfix in setting near-surface flag 24, inidicating wall-bounded grid points
118	!
119	! 4110 2019-07-22 17:05:21Z suehring
120	! - Separate initialization of advection flags for momentum and scalars.
121	! - Change subroutine interface for ws_init_flags_scalar to pass boundary flags
122	!
123	! 4109 2019-07-22 17:00:34Z suehring
124	! Fix bad commit
125	!
126	! 3926 2019-04-23 12:56:42Z suehring
127	! Minor bugfix in building mapping when all building IDs in the model domain are missing
128	!
129	! 3857 2019-04-03 13:00:16Z knoop
130	! In projection of non-building 3D objects onto numerical grid remove dependency on building_type
131	!
132	! 3763 2019-02-25 17:33:49Z suehring
133	! Replace work-around for ghost point exchange of 1-byte arrays with specific routine as already
134	! done in other routines
135	!
136	! 3761 2019-02-25 15:31:42Z raasch
137	! unused variables removed
138	!
139	! 3661 2019-01-08 18:22:50Z suehring
140	! Remove setting of nzb_max to nzt at non-cyclic boundary PEs, instead, order degradation of
141	! advection scheme is handeled directly in advec_ws
142	!
143	! 3655 2019-01-07 16:51:22Z knoop
144	! Comment added
145	!
146	! Revision 1.1 1997/08/11 06:17:45 raasch
147	! Initial revision (Testversion)
148	!
149	!
150	! Description:
151	! -------------------------------------------------------------------------------------------------!
152	!> Creating grid depending constants
153	!> @todo: Rearrange topo flag list
154	!> @todo: reference 3D buildings on top of orography is not tested and may need further improvement
155	!> for steep slopes
156	!> @todo: Use more advanced setting of building type at filled holes
157	!--------------------------------------------------------------------------------------------------!
158	SUBROUTINE init_grid
159
160	USE arrays_3d, &
161	ONLY: dd2zu, ddzu, ddzu_pres, ddzw, dzu, dzw, x, xu, y, yv, zu, zw
162
163	USE control_parameters, &
164	ONLY: constant_flux_layer, dz, dz_max, dz_stretch_factor, &
165	dz_stretch_factor_array, dz_stretch_level, dz_stretch_level_end, &
166	dz_stretch_level_end_index, dz_stretch_level_start_index, &
167	dz_stretch_level_start, message_string, &
168	number_stretch_level_end, &
169	number_stretch_level_start, &
170	ocean_mode, &
171	psolver, &
172	symmetry_flag, &
173	topography, &
174	use_surface_fluxes
175
176	USE grid_variables, &
177	ONLY: ddx, ddx2, ddy, ddy2, dx, dx2, dy, dy2, zu_s_inner, zw_w_inner
178
179	USE indices, &
180	ONLY: nbgp, &
181	nx, &
182	nxl, &
183	nxlg, &
184	nxr, &
185	nxrg, &
186	ny, &
187	nyn, &
188	nyng, &
189	nys, &
190	nysg, &
191	nz, &
192	nzb, &
193	nzb_diff, &
194	nzb_max, &
195	nzt, &
196	topo_top_ind, &
197	topo_min_level
198
199	USE kinds
200
201	USE pegrid
202
203	IMPLICIT NONE
204
205	INTEGER(iwp) :: i !< index variable along x
206	INTEGER(iwp) :: j !< index variable along y
207	INTEGER(iwp) :: k !< index variable along z
208	INTEGER(iwp) :: k_top !< topography top index on local PE
209	INTEGER(iwp) :: n !< loop variable for stretching
210	INTEGER(iwp) :: number_dz !< number of user-specified dz values
211	INTEGER(iwp) :: nzb_local_max !< vertical grid index of maximum topography height
212	INTEGER(iwp) :: nzb_local_min !< vertical grid index of minimum topography height
213
214	INTEGER(iwp), DIMENSION(:,:,:), ALLOCATABLE :: topo !< input array for 3D topography and dummy array for setting "outer"-flags
215
216	REAL(wp) :: dz_level_end !< distance between calculated height level for u/v-grid and user-specified end level for stretching
217	REAL(wp) :: dz_stretched !< stretched vertical grid spacing
218
219	REAL(wp), DIMENSION(:), ALLOCATABLE :: min_dz_stretch_level_end !< Array that contains all minimum heights where the stretching
220	!< can end
221
222
223	!
224	!-- Calculation of horizontal array bounds including ghost layers
225	nxlg = nxl - nbgp
226	nxrg = nxr + nbgp
227	nysg = nys - nbgp
228	nyng = nyn + nbgp
229
230	!
231	!-- Allocate grid arrays
232	ALLOCATE( x(0:nx) )
233	ALLOCATE( xu(0:nx) )
234
235	DO i = 0, nx
236	xu(i) = i * dx
237	x(i) = i * dx + 0.5_wp * dx
238	ENDDO
239
240	ALLOCATE( y(0:ny) )
241	ALLOCATE( yv(0:ny) )
242
243	DO j = 0, ny
244	yv(j) = j * dy
245	y(j) = j * dy + 0.5_wp * dy
246	ENDDO
247
248	ALLOCATE( ddzu(1:nzt+1) )
249	ALLOCATE( ddzw(1:nzt+1) )
250	ALLOCATE( dd2zu(1:nzt) )
251	ALLOCATE( dzu(1:nzt+1) )
252	ALLOCATE( dzw(1:nzt+1) )
253	ALLOCATE( zu(nzb:nzt+1) )
254	ALLOCATE( zw(nzb:nzt+1) )
255
256	!
257	!-- For constructing an appropriate grid, the vertical grid spacing dz has to be specified with a
258	!-- non-negative value in the parameter file.
259	IF ( dz(1) == -1.0_wp ) THEN
260	message_string = 'missing dz'
261	CALL message( 'init_grid', 'PA0200', 1, 2, 0, 6, 0 )
262	ELSEIF ( dz(1) <= 0.0_wp ) THEN
263	WRITE( message_string, * ) 'dz=',dz(1),' <= 0.0'
264	CALL message( 'init_grid', 'PA0201', 1, 2, 0, 6, 0 )
265	ENDIF
266
267	!
268	!-- Initialize dz_stretch_level_start with the value of dz_stretch_level if it was set by the user.
269	IF ( dz_stretch_level /= -9999999.9_wp ) THEN
270	dz_stretch_level_start(1) = dz_stretch_level
271	ENDIF
272
273	!
274	!-- Determine number of dz values and stretching levels specified by the user to allow right
275	!-- controlling of the stretching mechanism and to perform error checks. The additional requirement
276	!-- that dz /= dz_max for counting number of user-specified dz values is necessary. Otherwise
277	!-- restarts would abort if the old stretching mechanism with dz_stretch_level is used (Attention:
278	!-- The user is not allowed to specify a dz value equal to the default of dz_max = 999.0).
279	number_dz = COUNT( dz /= -1.0_wp .AND. dz /= dz_max)
280	number_stretch_level_start = COUNT( dz_stretch_level_start /= -9999999.9_wp )
281	number_stretch_level_end = COUNT( dz_stretch_level_end /= 9999999.9_wp )
282
283	!
284	!-- The number of specified end levels +1 has to be the same as the number
285	!-- of specified dz values
286	IF ( number_dz /= number_stretch_level_end + 1 ) THEN
287	WRITE( message_string, * ) 'The number of values for dz = ', number_dz, &
288	'has to be the same as& ', 'the number of values for ', &
289	'dz_stretch_level_end + 1 = ', number_stretch_level_end+1
290	CALL message( 'init_grid', 'PA0156', 1, 2, 0, 6, 0 )
291	ENDIF
292
293	!
294	!-- The number of specified start levels has to be the same or one less than the number of specified
295	!-- dz values
296	IF ( number_dz /= number_stretch_level_start + 1 .AND. &
297	number_dz /= number_stretch_level_start ) THEN
298	WRITE( message_string, * ) 'The number of values for dz = ', number_dz, &
299	'has to be the same as or one ', &
300	'more than& the number of values for ', &
301	'dz_stretch_level_start = ', number_stretch_level_start
302	CALL message( 'init_grid', 'PA0211', 1, 2, 0, 6, 0 )
303	ENDIF
304
305	!-- The number of specified start levels has to be the same or one more than the number of specified
306	!-- end levels
307	IF ( number_stretch_level_start /= number_stretch_level_end + 1 .AND. &
308	number_stretch_level_start /= number_stretch_level_end ) THEN
309	WRITE( message_string, * ) 'The number of values for ', &
310	'dz_stretch_level_start = ', dz_stretch_level_start, &
311	'has to be the ', 'same or one more than& the number of ', &
312	'values for dz_stretch_level_end = ', number_stretch_level_end
313	CALL message( 'init_grid', 'PA0216', 1, 2, 0, 6, 0 )
314	ENDIF
315
316	!
317	!-- Initialize dz for the free atmosphere with the value of dz_max
318	IF ( dz(number_stretch_level_start+1) == -1.0_wp .AND. number_stretch_level_start /= 0 ) THEN
319	dz(number_stretch_level_start+1) = dz_max
320	ENDIF
321
322	!
323	!-- Initialize the stretching factor if (infinitely) stretching in the free atmosphere is desired
324	!-- (dz_stretch_level_end was not specified for the free atmosphere)
325	IF ( number_stretch_level_start == number_stretch_level_end + 1 ) THEN
326	dz_stretch_factor_array(number_stretch_level_start) = dz_stretch_factor
327	ENDIF
328
329	!
330	!-- Allocation of arrays for stretching
331	ALLOCATE( min_dz_stretch_level_end(number_stretch_level_start) )
332
333	!
334	!-- Define the vertical grid levels. Start with atmosphere branch
335	IF ( .NOT. ocean_mode ) THEN
336
337	!
338	!-- The stretching region has to be large enough to allow for a smooth transition between two
339	!-- different grid spacings. The number 4 is an empirical value.
340	DO n = 1, number_stretch_level_start
341	min_dz_stretch_level_end(n) = dz_stretch_level_start(n) + 4 * MAX( dz(n),dz(n+1) )
342	ENDDO
343
344	IF ( ANY( min_dz_stretch_level_end(1:number_stretch_level_start) > &
345	dz_stretch_level_end(1:number_stretch_level_start) ) ) THEN
346	message_string= 'Each dz_stretch_level_end has to be larger ' // &
347	'than its corresponding value for &' // &
348	'dz_stretch_level_start + 4*MAX(dz(n),dz(n+1)) '// &
349	'to allow for smooth grid stretching'
350	CALL message( 'init_grid', 'PA0224', 1, 2, 0, 6, 0 )
351	ENDIF
352
353	!
354	!-- Stretching must not be applied within the surface layer (first two grid points). For the
355	!-- default case dz_stretch_level_start is negative. Therefore the absolut value is checked here.
356	IF ( ANY( ABS( dz_stretch_level_start ) <= dz(1) * 1.5_wp ) ) THEN
357	WRITE( message_string, * ) 'Each dz_stretch_level_start has to be ', &
358	'larger than ', dz(1) * 1.5
359	CALL message( 'init_grid', 'PA0226', 1, 2, 0, 6, 0 )
360	ENDIF
361
362	!
363	!-- The stretching has to start and end on a grid level. Therefore user-specified values are
364	!-- mapped to the next lowest level. The calculation of the first level is realized differently
365	!-- just because of historical reasons (the advanced/new stretching mechanism was realized in a
366	!-- way that results don't change if the old parameters dz_stretch_level, dz_stretch_factor and
367	!-- dz_max are used).
368	IF ( number_stretch_level_start /= 0 ) THEN
369	dz_stretch_level_start(1) = INT( (dz_stretch_level_start(1) - dz(1)/2.0) / dz(1) ) &
370	* dz(1) + dz(1)/2.0
371	ENDIF
372
373	IF ( number_stretch_level_start > 1 ) THEN
374	DO n = 2, number_stretch_level_start
375	dz_stretch_level_start(n) = INT( dz_stretch_level_start(n) / dz(n) ) * dz(n)
376	ENDDO
377	ENDIF
378
379	IF ( number_stretch_level_end /= 0 ) THEN
380	DO n = 1, number_stretch_level_end
381	dz_stretch_level_end(n) = INT( dz_stretch_level_end(n) / dz(n+1) ) * dz(n+1)
382	ENDDO
383	ENDIF
384
385	!
386	!-- Determine stretching factor if necessary
387	IF ( number_stretch_level_end >= 1 ) THEN
388	CALL calculate_stretching_factor( number_stretch_level_end )
389	ENDIF
390
391	!
392	!-- Grid for atmosphere with surface at z=0. This corresponds to k=0 on the w-grid AND
393	!-- the u-grid.
394	!-- First compute the u- and v-levels.
395	!-- The second u-level (k=1) corresponds to the top of the surface layer.
396	zu(0) = 0.0_wp
397	zu(1) = dz(1) * 0.5_wp
398
399	!
400	!-- Determine u and v height levels considering the possibility of grid stretching in several
401	!-- heights.
402	n = 1
403	dz_stretch_level_start_index = nzt+1
404	dz_stretch_level_end_index = nzt+1
405	dz_stretched = dz(1)
406
407	!-- The default value of dz_stretch_level_start is negative, thus the first condition is true
408	!-- even if no stretching shall be applied. Hence, the second condition is also necessary.
409	DO k = 2, nzt+1-symmetry_flag
410	IF ( dz_stretch_level_start(n) <= zu(k-1) .AND. &
411	dz_stretch_level_start(n) /= -9999999.9_wp ) THEN
412	dz_stretched = dz_stretched * dz_stretch_factor_array(n)
413
414	IF ( dz(n) > dz(n+1) ) THEN
415	dz_stretched = MAX( dz_stretched, dz(n+1) ) !Restrict dz_stretched to the user-specified (higher) dz
416	ELSE
417	dz_stretched = MIN( dz_stretched, dz(n+1) ) !Restrict dz_stretched to the user-specified (lower) dz
418	ENDIF
419
420	IF ( dz_stretch_level_start_index(n) == nzt+1 ) dz_stretch_level_start_index(n) = k-1
421
422	ENDIF
423
424	zu(k) = zu(k-1) + dz_stretched
425
426	!
427	!-- Make sure that the stretching ends exactly at dz_stretch_level_end
428	dz_level_end = ABS( zu(k) - dz_stretch_level_end(n) )
429
430	IF ( dz_level_end < dz(n+1) / 3.0 ) THEN
431	zu(k) = dz_stretch_level_end(n)
432	dz_stretched = dz(n+1)
433	dz_stretch_level_end_index(n) = k
434	n = n + 1
435	ENDIF
436	ENDDO
437
438	!
439	!-- If a closed channel flow is simulated, make sure that grid structure is the same for both
440	!-- bottom and top boundary. (Hint: Using a different dz at the bottom and at the top makes no
441	!-- sense due to symmetric boundaries where dz should be equal. Therefore, different dz at the
442	!-- bottom and top causes an abort (see check_parameters).)
443	IF ( topography == 'closed_channel' ) THEN
444	zu(nzt+1) = zu(nzt) + dz(1) * 0.5_wp
445	ENDIF
446
447	!
448	!-- Compute the w-levels. They are always staggered half-way between the corresponding u-levels.
449	!-- In case of dirichlet bc for u and v at the ground the first u- and w-level (k=0) are defined
450	!-- at same height (z=0).
451	!-- Per default, the top w-level is extrapolated linearly. In case of a closed channel flow,
452	!-- zu(nzt+1) and zw(nzt) must be set explicitely.
453	!-- (Hint: Using a different dz at the bottom and at the top makes no sense due to symmetric
454	!-- boundaries where dz should be equal. Therefore, different dz at the bottom and top causes an
455	!-- abort (see check_parameters).)
456	zw(0) = 0.0_wp
457	DO k = 1, nzt-symmetry_flag
458	zw(k) = ( zu(k) + zu(k+1) ) * 0.5_wp
459	ENDDO
460	IF ( topography == 'closed_channel' ) THEN
461	zw(nzt) = zw(nzt-1) + dz(1)
462	zw(nzt+1) = zw(nzt) + dz(1)
463	ELSE
464	zw(nzt+1) = zw(nzt) + 2.0_wp * ( zu(nzt+1) - zw(nzt) )
465	ENDIF
466
467	ELSE !ocean branch
468
469	!
470	!-- The stretching region has to be large enough to allow for a smooth transition between two
471	!-- different grid spacings. The number 4 is an empirical value
472	DO n = 1, number_stretch_level_start
473	min_dz_stretch_level_end(n) = dz_stretch_level_start(n) - 4 * MAX( dz(n),dz(n+1) )
474	ENDDO
475
476	IF ( ANY( min_dz_stretch_level_end (1:number_stretch_level_start) < &
477	dz_stretch_level_end(1:number_stretch_level_start) ) ) THEN
478	message_string= 'Each dz_stretch_level_end has to be less ' // &
479	'than its corresponding value for &' // &
480	'dz_stretch_level_start - 4*MAX(dz(n),dz(n+1)) '// &
481	'to allow for smooth grid stretching'
482	CALL message( 'init_grid', 'PA0224', 1, 2, 0, 6, 0 )
483	ENDIF
484
485	!
486	!-- Stretching must not be applied close to the surface (last two grid points). For the default
487	!-- case dz_stretch_level_start is negative.
488	IF ( ANY( dz_stretch_level_start >= - dz(1) * 1.5_wp ) ) THEN
489	WRITE( message_string, * ) 'Each dz_stretch_level_start has to be ', &
490	'less than ', -dz(1) * 1.5
491	CALL message( 'init_grid', 'PA0226', 1, 2, 0, 6, 0 )
492	ENDIF
493
494	!
495	!-- The stretching has to start and end on a grid level. Therefore user-specified values are
496	!-- mapped to the next highest level. The calculation of the first level is realized differently
497	!-- just because of historical reasons (the advanced/new stretching mechanism was realized in a
498	!-- way that results don't change if the old parameters dz_stretch_level, dz_stretch_factor and
499	!-- dz_max are used)
500	IF ( number_stretch_level_start /= 0 ) THEN
501	dz_stretch_level_start(1) = INT( (dz_stretch_level_start(1) + dz(1)/2.0) / dz(1) ) &
502	* dz(1) - dz(1)/2.0
503	ENDIF
504
505	IF ( number_stretch_level_start > 1 ) THEN
506	DO n = 2, number_stretch_level_start
507	dz_stretch_level_start(n) = INT( dz_stretch_level_start(n) / dz(n) ) * dz(n)
508	ENDDO
509	ENDIF
510
511	IF ( number_stretch_level_end /= 0 ) THEN
512	DO n = 1, number_stretch_level_end
513	dz_stretch_level_end(n) = INT( dz_stretch_level_end(n) / dz(n+1) ) * dz(n+1)
514	ENDDO
515	ENDIF
516
517	!
518	!-- Determine stretching factor if necessary
519	IF ( number_stretch_level_end >= 1 ) THEN
520	CALL calculate_stretching_factor( number_stretch_level_end )
521	ENDIF
522
523	!
524	!-- Grid for ocean with free water surface is at k=nzt (w-grid).
525	!-- In case of neumann bc at the ground the first first u-level (k=0) lies below the first
526	!-- w-level (k=0). In case of dirichlet bc the first u- and w-level are defined at same height,
527	!-- but staggered from the second level.
528	!-- The second u-level (k=1) corresponds to the top of the surface layer.
529	!-- z values are negative starting from z=0 (surface)
530	zu(nzt+1) = dz(1) * 0.5_wp
531	zu(nzt) = - dz(1) * 0.5_wp
532
533	!
534	!-- Determine u and v height levels considering the possibility of grid stretching in several
535	!-- heights.
536	n = 1
537	dz_stretch_level_start_index = 0
538	dz_stretch_level_end_index = 0
539	dz_stretched = dz(1)
540
541	DO k = nzt-1, 0, -1
542
543	IF ( dz_stretch_level_start(n) >= zu(k+1) ) THEN
544	dz_stretched = dz_stretched * dz_stretch_factor_array(n)
545
546	IF ( dz(n) > dz(n+1) ) THEN
547	dz_stretched = MAX( dz_stretched, dz(n+1) ) !Restrict dz_stretched to the user-specified (higher) dz
548	ELSE
549	dz_stretched = MIN( dz_stretched, dz(n+1) ) !Restrict dz_stretched to the user-specified (lower) dz
550	ENDIF
551
552	IF ( dz_stretch_level_start_index(n) == 0 ) dz_stretch_level_start_index(n) = k+1
553
554	ENDIF
555
556	zu(k) = zu(k+1) - dz_stretched
557
558	!
559	!-- Make sure that the stretching ends exactly at dz_stretch_level_end
560	dz_level_end = ABS( zu(k) - dz_stretch_level_end(n) )
561
562	IF ( dz_level_end < dz(n+1)/3.0 ) THEN
563	zu(k) = dz_stretch_level_end(n)
564	dz_stretched = dz(n+1)
565	dz_stretch_level_end_index(n) = k
566	n = n + 1
567	ENDIF
568	ENDDO
569
570	!
571	!-- Compute the w-levels. They are always staggered half-way between the corresponding u-levels,
572	!-- except for u and v at the ground. In this case the first u- and
573	!-- w-level are defined at same height. The top w-level (nzt+1) is not used but set for
574	!-- consistency, since w and all scalar variables are defined up to nzt+1.
575	zw(nzt+1) = dz(1)
576	zw(nzt) = 0.0_wp
577	DO k = 0, nzt
578	zw(k) = ( zu(k) + zu(k+1) ) * 0.5_wp
579	ENDDO
580
581	!
582	!-- Like for the atmosphere, the first u-grid and w-grid-level are defined at same height.
583	zu(0) = zw(0)
584
585	ENDIF !End of defining the vertical grid levels
586
587	!
588	!-- Compute grid lengths.
589	DO k = 1, nzt+1
590	dzu(k) = zu(k) - zu(k-1)
591	ddzu(k) = 1.0_wp / dzu(k)
592	dzw(k) = zw(k) - zw(k-1)
593	ddzw(k) = 1.0_wp / dzw(k)
594	ENDDO
595
596	DO k = 1, nzt
597	dd2zu(k) = 1.0_wp / ( dzu(k) + dzu(k+1) )
598	ENDDO
599
600	!
601	!-- The FFT- SOR-pressure solvers assume grid spacings of a staggered grid everywhere. For the
602	!-- actual grid, the grid spacing at the lowest level is only dz/2, but should be dz. Therefore, an
603	!-- additional array containing with appropriate grid information is created for these solvers.
604	IF ( psolver(1:9) /= 'multigrid' ) THEN
605	ALLOCATE( ddzu_pres(1:nzt+1) )
606	ddzu_pres = ddzu
607	ddzu_pres(1) = ddzu_pres(2) ! change for lowest level
608	ENDIF
609
610	!
611	!-- Compute the reciprocal values of the horizontal grid lengths.
612	ddx = 1.0_wp / dx
613	ddy = 1.0_wp / dy
614	dx2 = dx * dx
615	dy2 = dy * dy
616	ddx2 = 1.0_wp / dx2
617	ddy2 = 1.0_wp / dy2
618
619	!
620	!-- Allocate 3D array to set topography
621	ALLOCATE( topo(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
622	topo = 0
623	!
624	!-- Initialize topography by generic topography or read topography from file.
625	CALL init_topo( topo )
626	!
627	!-- Set flags to mask topography on the grid.
628	CALL set_topo_flags( topo )
629
630	!
631	!-- Determine the maximum level of topography. It is used for steering the degradation of order of
632	!-- the applied advection scheme, as well in the lpm.
633	k_top = 0
634	DO i = nxl, nxr
635	DO j = nys, nyn
636	DO k = nzb, nzt + 1
637	k_top = MAX( k_top, MERGE( k, 0, .NOT. BTEST( topo(k,j,i), 0 ) ) )
638	ENDDO
639	ENDDO
640	ENDDO
641	#if defined( __parallel )
642	CALL MPI_ALLREDUCE( k_top, nzb_max, 1, MPI_INTEGER, MPI_MAX, comm2d, ierr )
643	#else
644	nzb_max = k_top
645	#endif
646	!
647	!-- Increment nzb_max by 1 in order to allow for proper diverengence correction.
648	!-- Further, in case topography extents up to the model top, limit to nzt.
649	nzb_max = MIN( nzb_max+1, nzt )
650	!
651	!-- Determine minimum index of topography. Usually, this will be nzb. In case there is elevated
652	!-- topography, however, the lowest topography will be higher.
653	!-- This index is e.g. used to calculate mean first-grid point atmosphere temperature, surface
654	!-- pressure and density, etc. .
655	topo_min_level = 0
656	#if defined( __parallel )
657	CALL MPI_ALLREDUCE( MINVAL( topo_top_ind(nys:nyn,nxl:nxr,0) ), topo_min_level, 1, MPI_INTEGER, &
658	MPI_MIN, comm2d, ierr )
659	#else
660	topo_min_level = MINVAL( topo_top_ind(nys:nyn,nxl:nxr,0) )
661	#endif
662
663	!
664	!-- Check topography for consistency with model domain. Therefore, use maximum and minium
665	!-- topography-top indices. Note, minimum topography top index is already calculated.
666	IF ( TRIM( topography ) /= 'flat' ) THEN
667	#if defined( __parallel )
668	CALL MPI_ALLREDUCE( MAXVAL( topo_top_ind(nys:nyn,nxl:nxr,0) ), nzb_local_max, 1, &
669	MPI_INTEGER, MPI_MAX, comm2d, ierr )
670	#else
671	nzb_local_max = MAXVAL( topo_top_ind(nys:nyn,nxl:nxr,0) )
672	#endif
673	nzb_local_min = topo_min_level
674	!
675	!-- Consistency checks
676	IF ( nzb_local_min < 0 .OR. nzb_local_max > nz + 1 ) THEN
677	WRITE( message_string, * ) 'nzb_local values are outside the model domain', &
678	'&MINVAL( nzb_local ) = ', nzb_local_min, &
679	'&MAXVAL( nzb_local ) = ', nzb_local_max
680	CALL message( 'init_grid', 'PA0210', 1, 2, 0, 6, 0 )
681	ENDIF
682	ENDIF
683	!
684	!-- Define vertical gridpoint from (or to) which on the usual finite difference form (which does not
685	!-- use surface fluxes) is applied.
686	IF ( constant_flux_layer .OR. use_surface_fluxes ) THEN
687	nzb_diff = nzb + 2
688	ELSE
689	nzb_diff = nzb + 1
690	ENDIF
691
692	IF ( TRIM( topography ) /= 'flat' ) THEN
693	!
694	!-- Allocate and set the arrays containing the topography height (for output reasons only).
695	IF ( nxr == nx .AND. nyn /= ny ) THEN
696	ALLOCATE( zu_s_inner(nxl:nxr+1,nys:nyn), zw_w_inner(nxl:nxr+1,nys:nyn) )
697	ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
698	ALLOCATE( zu_s_inner(nxl:nxr,nys:nyn+1), zw_w_inner(nxl:nxr,nys:nyn+1) )
699	ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
700	ALLOCATE( zu_s_inner(nxl:nxr+1,nys:nyn+1), zw_w_inner(nxl:nxr+1,nys:nyn+1) )
701	ELSE
702	ALLOCATE( zu_s_inner(nxl:nxr,nys:nyn), zw_w_inner(nxl:nxr,nys:nyn) )
703	ENDIF
704
705	zu_s_inner = 0.0_wp
706	zw_w_inner = 0.0_wp
707	!
708	!-- Determine local topography height on scalar and w-grid. Note, setting lateral boundary values
709	!-- is not necessary, realized via wall_flags_static_0 array. Further, please note that loop
710	!-- bounds are different from nxl to nxr and nys to nyn on south and right model boundary, hence,
711	!-- use intrinsic lbound and ubound functions to infer array bounds.
712	DO i = LBOUND(zu_s_inner, 1), UBOUND(zu_s_inner, 1)
713	DO j = LBOUND(zu_s_inner, 2), UBOUND(zu_s_inner, 2)
714	!
715	!-- Topography height on scalar grid. Therefore, determine index of upward-facing surface
716	!-- element on scalar grid.
717	zu_s_inner(i,j) = zu(topo_top_ind(j,i,0))
718	!
719	!-- Topography height on w grid. Therefore, determine index of upward-facing surface
720	!-- element on w grid.
721	zw_w_inner(i,j) = zw(topo_top_ind(j,i,3))
722	ENDDO
723	ENDDO
724	ENDIF
725
726	END SUBROUTINE init_grid
727
728
729	! Description:
730	! -------------------------------------------------------------------------------------------------!
731	!> Calculation of the stretching factor through an iterative method. Ideas were taken from the paper
732	!> "Regional stretched grid generation and its application to the NCAR RegCM (1999)". Normally, no
733	!> analytic solution exists because the system of equations has two variables (r,l) but four
734	!> requirements (l=integer, r=[0,88;1,2], Eq(6), Eq(5) starting from index j=1) which results into
735	!> an overdetermined system.
736	!--------------------------------------------------------------------------------------------------!
737	SUBROUTINE calculate_stretching_factor( number_end )
738
739	USE control_parameters, &
740	ONLY: dz, dz_stretch_factor_array, dz_stretch_level_end, dz_stretch_level_start, &
741	message_string
742
743	USE kinds
744
745	IMPLICIT NONE
746
747	REAL(wp), PARAMETER :: stretch_factor_interval = 1.0E-06_wp !< interval for sampling possible stretching factors
748	REAL(wp), PARAMETER :: stretch_factor_lower_limit = 0.88_wp !< lowest possible stretching factor
749	REAL(wp), PARAMETER :: stretch_factor_upper_limit = 1.12_wp !< highest possible stretching factor
750
751	INTEGER(iwp) :: iterations !< number of iterations until stretch_factor_lower/upper_limit is reached
752	INTEGER(iwp) :: l_rounded !< after l_rounded grid levels dz(n) is strechted to dz(n+1) with stretch_factor_2
753	INTEGER(iwp) :: n !< loop variable for stretching
754
755	INTEGER(iwp), INTENT(IN) :: number_end !< number of user-specified end levels for stretching
756
757	REAL(wp) :: delta_l !< absolute difference between l and l_rounded
758	REAL(wp) :: delta_stretch_factor !< absolute difference between stretch_factor_1 and stretch_factor_2
759	REAL(wp) :: delta_total_new !< sum of delta_l and delta_stretch_factor for the next iteration (should be as small as
760	!< possible)
761	REAL(wp) :: delta_total_old !< sum of delta_l and delta_stretch_factor for the last iteration
762	REAL(wp) :: distance !< distance between dz_stretch_level_start and dz_stretch_level_end (stretching region)
763	REAL(wp) :: l !< value that fulfil Eq. (5) in the paper mentioned above together with stretch_factor_1
764	!< exactly
765	REAL(wp) :: numerator !< numerator of the quotient
766	REAL(wp) :: stretch_factor_1 !< stretching factor that fulfil Eq. (5) togehter with l exactly
767	REAL(wp) :: stretch_factor_2 !< stretching factor that fulfil Eq. (6) togehter with l_rounded exactly
768
769	REAL(wp) :: dz_stretch_factor_array_2(9) = 1.08_wp !< Array that contains all stretch_factor_2 that belongs to
770	!< stretch_factor_1
771
772
773	l = 0
774	DO n = 1, number_end
775
776	iterations = 1
777	stretch_factor_1 = 1.0_wp
778	stretch_factor_2 = 1.0_wp
779	delta_total_old = 1.0_wp
780
781	!
782	!-- First branch for stretching from rough to fine
783	IF ( dz(n) > dz(n+1) ) THEN
784	DO WHILE ( stretch_factor_1 >= stretch_factor_lower_limit )
785
786	stretch_factor_1 = 1.0_wp - iterations * stretch_factor_interval
787	distance = ABS( dz_stretch_level_end(n) - dz_stretch_level_start(n) )
788	numerator = distance * stretch_factor_1 / dz(n) + stretch_factor_1 - distance / dz(n)
789
790	IF ( numerator > 0.0_wp ) THEN
791	l = LOG( numerator ) / LOG( stretch_factor_1 ) - 1.0_wp
792	l_rounded = NINT( l )
793	delta_l = ABS( l_rounded - l ) / l
794	ENDIF
795
796	stretch_factor_2 = EXP( LOG( dz(n+1)/dz(n) ) / (l_rounded) )
797
798	delta_stretch_factor = ABS( stretch_factor_1 - stretch_factor_2 ) / stretch_factor_2
799
800	delta_total_new = delta_l + delta_stretch_factor
801
802	!
803	!-- stretch_factor_1 is taken to guarantee that the stretching procedure ends as close as
804	!-- possible to dz_stretch_level_end.
805	!-- stretch_factor_2 would guarantee that the stretched dz(n) is equal to dz(n+1) after
806	!-- l_rounded grid levels.
807	IF (delta_total_new < delta_total_old) THEN
808	dz_stretch_factor_array(n) = stretch_factor_1
809	dz_stretch_factor_array_2(n) = stretch_factor_2
810	delta_total_old = delta_total_new
811	ENDIF
812
813	iterations = iterations + 1
814
815	ENDDO
816
817	!
818	!-- Second branch for stretching from fine to rough
819	ELSEIF ( dz(n) < dz(n+1) ) THEN
820
821	DO WHILE ( stretch_factor_1 <= stretch_factor_upper_limit )
822
823	stretch_factor_1 = 1.0_wp + iterations * stretch_factor_interval
824	distance = ABS( dz_stretch_level_end(n) - dz_stretch_level_start(n) )
825	numerator = distance * stretch_factor_1 / dz(n) + stretch_factor_1 - distance / dz(n)
826
827	l = LOG( numerator ) / LOG( stretch_factor_1 ) - 1.0_wp
828	l_rounded = NINT( l )
829	delta_l = ABS( l_rounded - l ) / l
830
831	stretch_factor_2 = EXP( LOG( dz(n+1)/dz(n) ) / (l_rounded) )
832
833	delta_stretch_factor = ABS( stretch_factor_1 - stretch_factor_2 ) / stretch_factor_2
834
835	delta_total_new = delta_l + delta_stretch_factor
836
837	!
838	!-- stretch_factor_1 is taken to guarantee that the stretching procedure ends as close as
839	!-- possible to dz_stretch_level_end.
840	!-- stretch_factor_2 would guarantee that the stretched dz(n) is equal to dz(n+1) after
841	!-- l_rounded grid levels.
842	IF (delta_total_new < delta_total_old) THEN
843	dz_stretch_factor_array(n) = stretch_factor_1
844	dz_stretch_factor_array_2(n) = stretch_factor_2
845	delta_total_old = delta_total_new
846	ENDIF
847
848	iterations = iterations + 1
849	ENDDO
850
851	ELSE
852
853	message_string= 'Two adjacent values of dz must be different'
854	CALL message( 'init_grid', 'PA0228', 1, 2, 0, 6, 0 )
855
856	ENDIF
857
858	!
859	!-- Check if also the second stretching factor fits into the allowed interval. If not, print a
860	!-- warning for the user.
861	IF ( dz_stretch_factor_array_2(n) < stretch_factor_lower_limit .OR. &
862	dz_stretch_factor_array_2(n) > stretch_factor_upper_limit ) THEN
863	WRITE( message_string, * ) 'stretch_factor_2 = ', dz_stretch_factor_array_2(n), &
864	' which is', ' responsible for exactly reaching& dz =', &
865	dz(n+1), 'after a specific amount of', &
866	' grid levels& exceeds the upper', &
867	' limit =', stretch_factor_upper_limit, &
868	' &or lower limit = ', stretch_factor_lower_limit
869	CALL message( 'init_grid', 'PA0499', 0, 1, 0, 6, 0 )
870
871	ENDIF
872
873	ENDDO
874
875	END SUBROUTINE calculate_stretching_factor
876
877
878	! Description:
879	! -------------------------------------------------------------------------------------------------!
880	!> Set temporary topography flags and reference buildings on top of underlying orography.
881	!--------------------------------------------------------------------------------------------------!
882	SUBROUTINE process_topography( topo_3d )
883
884	USE arrays_3d, &
885	ONLY: zu, zw
886
887	USE control_parameters, &
888	ONLY: bc_lr_cyc, bc_ns_cyc, ocean_mode
889
890	USE exchange_horiz_mod, &
891	ONLY: exchange_horiz_2d, exchange_horiz_int
892
893	USE indices, &
894	ONLY: nbgp, nx, nxl, nxlg, nxr, nxrg, ny, nyn, nyng, nys, nysg, nzb, nzt
895
896	USE netcdf_data_input_mod, &
897	ONLY: buildings_f, building_id_f, building_type_f, &
898	init_model, &
899	input_pids_static, &
900	terrain_height_f
901
902	USE kinds
903
904	USE pegrid
905
906	IMPLICIT NONE
907
908	INTEGER(iwp) :: dim_builds !< total number of buildings within the model domain
909	INTEGER(iwp) :: i !< running index along x-direction
910	INTEGER(iwp) :: j !< running index along y-direction
911	INTEGER(iwp) :: k !< running index along z-direction with respect to numeric grid
912	INTEGER(iwp) :: k2 !< running index along z-direction with respect to netcdf grid
913	INTEGER(iwp) :: nr !< index variable indication maximum terrain height for respective building ID
914	INTEGER(iwp) :: num_build !< counter for number of buildings
915	INTEGER(iwp) :: topo_top_index !< orography top index, used to map 3D buildings onto terrain
916
917	#if defined( __parallel )
918	INTEGER(iwp), DIMENSION(:), ALLOCATABLE :: displace_dum !< displacements of start addresses, used for MPI_ALLGATHERV
919	#endif
920	INTEGER(iwp), DIMENSION(:), ALLOCATABLE :: build_ids !< building IDs on entire model domain
921	INTEGER(iwp), DIMENSION(:), ALLOCATABLE :: build_ids_final !< building IDs on entire model domain, multiple occurences are
922	!< sorted out
923	INTEGER(iwp), DIMENSION(:), ALLOCATABLE :: build_ids_final_tmp !< temporary array used for resizing
924	INTEGER(iwp), DIMENSION(:), ALLOCATABLE :: build_ids_l !< building IDs on local subdomain
925	INTEGER(iwp), DIMENSION(:), ALLOCATABLE :: build_ids_l_tmp !< temporary array used to resize array of building IDs
926
927	INTEGER(iwp), DIMENSION(0:numprocs-1) :: num_buildings !< number of buildings with different ID on entire model domain
928	INTEGER(iwp), DIMENSION(0:numprocs-1) :: num_buildings_l !< number of buildings with different ID on local subdomain
929
930	INTEGER(iwp), DIMENSION(nzb:nzt+1,nysg:nyng,nxlg:nxrg) :: topo_3d !< input array for 3D topography and dummy array for setting
931	!< "outer"-flags
932
933	REAL(wp) :: ocean_offset !< offset to consider inverse vertical coordinate at topography
934	!< definition
935	REAL(wp) :: oro_min = 0.0_wp !< minimum terrain height in entire model domain, used to reference
936	!< terrain to zero
937	REAL(wp), DIMENSION(:), ALLOCATABLE :: oro_max !< maximum terrain height occupied by an building with certain id
938	REAL(wp), DIMENSION(:), ALLOCATABLE :: oro_max_l !< maximum terrain height occupied by an building with certain id,
939	!< on local subdomain
940
941	!
942	!-- Reference lowest terrain height to zero. This ensures that first, non-required gird levels
943	!-- (those which lie entirely below the minimum orography) are avoided, and second, that also
944	!-- negative orography can be used within the input file.
945	!-- Please note, in case of a nested run, the global minimum from all parent and childs needs to be
946	!-- removed to avoid steep edges at the child-domain boundaries.
947	IF ( input_pids_static ) THEN
948
949	#if defined( __parallel )
950	CALL MPI_ALLREDUCE( MINVAL( terrain_height_f%var ), oro_min, 1, MPI_REAL, MPI_MIN, &
951	MPI_COMM_WORLD, ierr )
952	#else
953	oro_min = MINVAL( terrain_height_f%var )
954	#endif
955	terrain_height_f%var = terrain_height_f%var - oro_min
956	!
957	!-- Update reference height used within output files
958	init_model%origin_z = init_model%origin_z + oro_min
959	!
960	!-- ASCII topography branch. In this case, in contrast to the static driver input, topography is
961	!-- assumed to be building; thus the minimum building height is substracted from the building array.
962	ELSE
963	#if defined( __parallel )
964	CALL MPI_ALLREDUCE( MINVAL( buildings_f%var_2d ), oro_min, 1, MPI_REAL, MPI_MIN, &
965	MPI_COMM_WORLD, ierr )
966	#else
967	oro_min = MINVAL( buildings_f%var_2d )
968	#endif
969	buildings_f%var_2d = buildings_f%var_2d - oro_min
970	!
971	!-- Update reference height used within output files
972	init_model%origin_z = init_model%origin_z + oro_min
973	ENDIF
974
975	!
976	!-- In the following, buildings and orography are further preprocessed before they are mapped on the
977	!-- LES grid.
978	!-- Buildings are mapped on top of the orography by maintaining the roof shape of the building. This
979	!-- can be achieved by referencing building on top of the maximum terrain height within the area
980	!-- occupied by the respective building. As buildings and terrain height are defined PE-wise,
981	!-- parallelization of this referencing is required (a building can be distributed between different
982	!-- PEs).
983	!-- In a first step, determine the number of buildings with different building id on each PE. In a
984	!-- next step, all building ids are gathered into one array which is present to all PEs. For each
985	!-- building ID, the maximum terrain height occupied by the respective building is computed and
986	!-- distributed to each PE.
987	!-- Finally, for each building id and its respective reference orography, builidings are mapped on
988	!-- top.
989	!--
990	!-- First, pre-set topography flags, bit 1 indicates orography, bit 2 buildings classify the
991	!-- respective surfaces.
992	topo_3d = IBSET( topo_3d, 0 )
993	topo_3d(nzb,:,:) = IBCLR( topo_3d(nzb,:,:), 0 )
994	!
995	!-- In order to map topography on PALM grid also in case of ocean simulations, pre-calculate an
996	!-- offset value.
997	ocean_offset = MERGE( zw(0), 0.0_wp, ocean_mode )
998	!
999	!-- Reference buildings on top of orography. This is not necessary if topography is read from ASCII
1000	!-- file as no distinction between buildings and terrain height can be made. Moreover, this is also
1001	!-- not necessary if urban-surface and land-surface model are used at the same time.
1002	IF ( input_pids_static ) THEN
1003
1004	IF ( buildings_f%from_file ) THEN
1005	num_buildings_l = 0
1006	num_buildings = 0
1007	!
1008	!-- Allocate at least one element for building ids and give it an inital negative value that
1009	!-- will be overwritten later. This, however, is necessary in case there all IDs in the model
1010	!-- domain are fill values.
1011	ALLOCATE( build_ids_l(1) )
1012	build_ids_l = -1
1013	DO i = nxl, nxr
1014	DO j = nys, nyn
1015	IF ( building_id_f%var(j,i) /= building_id_f%fill ) THEN
1016	IF ( num_buildings_l(myid) > 0 ) THEN
1017	IF ( ANY( building_id_f%var(j,i) == build_ids_l ) ) THEN
1018	CYCLE
1019	ELSE
1020	num_buildings_l(myid) = num_buildings_l(myid) + 1
1021	!
1022	!-- Resize array with different local building ids
1023	ALLOCATE( build_ids_l_tmp(1:SIZE(build_ids_l)) )
1024	build_ids_l_tmp = build_ids_l
1025	DEALLOCATE( build_ids_l )
1026	ALLOCATE( build_ids_l(1:num_buildings_l(myid)) )
1027	build_ids_l(1:num_buildings_l(myid)-1) = &
1028	build_ids_l_tmp(1:num_buildings_l(myid)-1)
1029	build_ids_l(num_buildings_l(myid)) = building_id_f%var(j,i)
1030	DEALLOCATE( build_ids_l_tmp )
1031	ENDIF
1032	!
1033	!-- First occuring building id on PE
1034	ELSE
1035	num_buildings_l(myid) = num_buildings_l(myid) + 1
1036	build_ids_l(1) = building_id_f%var(j,i)
1037	ENDIF
1038	ENDIF
1039	ENDDO
1040	ENDDO
1041	!
1042	!-- Determine number of different building ids for the entire domain
1043	#if defined( __parallel )
1044	CALL MPI_ALLREDUCE( num_buildings_l, num_buildings, numprocs, MPI_INTEGER, MPI_SUM, &
1045	comm2d, ierr )
1046	#else
1047	num_buildings = num_buildings_l
1048	#endif
1049	!
1050	!-- Gather all buildings ids on each PEs.
1051	!-- First, allocate array encompassing all building ids in model domain.
1052	ALLOCATE( build_ids(1:SUM(num_buildings)) )
1053	#if defined( __parallel )
1054	!
1055	!-- Allocate array for displacements.
1056	!-- As each PE may has a different number of buildings, so that the block sizes send by each
1057	!-- PE may not be equal. Hence, information about the respective displacement is required,
1058	!-- indicating the respective adress where each MPI-task writes into the receive buffer array.
1059	ALLOCATE( displace_dum(0:numprocs-1) )
1060	displace_dum(0) = 0
1061	DO i = 1, numprocs-1
1062	displace_dum(i) = displace_dum(i-1) + num_buildings(i-1)
1063	ENDDO
1064
1065	CALL MPI_ALLGATHERV( build_ids_l(1:num_buildings_l(myid)), num_buildings(myid), &
1066	MPI_INTEGER, build_ids, num_buildings, displace_dum, MPI_INTEGER, &
1067	comm2d, ierr )
1068
1069	DEALLOCATE( displace_dum )
1070
1071	#else
1072	build_ids = build_ids_l
1073	#endif
1074
1075	!
1076	!-- Note, in parallel mode building ids can occure mutliple times, as each PE has send its own
1077	!-- ids. Therefore, sort out building ids which appear more than one time.
1078	num_build = 0
1079	DO nr = 1, SIZE(build_ids)
1080
1081	IF ( ALLOCATED(build_ids_final) ) THEN
1082	IF ( ANY( build_ids(nr) == build_ids_final ) ) THEN
1083	CYCLE
1084	ELSE
1085	num_build = num_build + 1
1086	!
1087	!-- Resize
1088	ALLOCATE( build_ids_final_tmp(1:num_build) )
1089	build_ids_final_tmp(1:num_build-1) = build_ids_final(1:num_build-1)
1090	DEALLOCATE( build_ids_final )
1091	ALLOCATE( build_ids_final(1:num_build) )
1092	build_ids_final(1:num_build-1) = build_ids_final_tmp(1:num_build-1)
1093	build_ids_final(num_build) = build_ids(nr)
1094	DEALLOCATE( build_ids_final_tmp )
1095	ENDIF
1096	ELSE
1097	num_build = num_build + 1
1098	ALLOCATE( build_ids_final(1:num_build) )
1099	build_ids_final(num_build) = build_ids(nr)
1100	ENDIF
1101	ENDDO
1102
1103	!
1104	!-- Determine maximumum terrain height occupied by the respective building and temporalily
1105	!-- store on oro_max. Before, check whether any buildings are defined within the domain.
1106	IF ( ALLOCATED( build_ids_final ) ) THEN
1107	dim_builds = SIZE(build_ids_final)
1108	ELSE
1109	dim_builds = 0
1110	ENDIF
1111
1112	ALLOCATE( oro_max_l(1:dim_builds) )
1113	ALLOCATE( oro_max(1:dim_builds) )
1114	oro_max_l = 0.0_wp
1115
1116	DO nr = 1, dim_builds
1117	oro_max_l(nr) = MAXVAL( MERGE( terrain_height_f%var(nys:nyn,nxl:nxr), &
1118	0.0_wp, &
1119	building_id_f%var(nys:nyn,nxl:nxr) == &
1120	build_ids_final(nr) ) )
1121	ENDDO
1122
1123	#if defined( __parallel )
1124	IF ( dim_builds >= 1 ) THEN
1125	CALL MPI_ALLREDUCE( oro_max_l, oro_max, SIZE( oro_max ), MPI_REAL, MPI_MAX, comm2d, &
1126	ierr )
1127	ENDIF
1128	#else
1129	oro_max = oro_max_l
1130	#endif
1131	!
1132	!-- Finally, determine discrete grid height of maximum orography occupied by a building. Use
1133	!-- all-or-nothing approach, i.e. if terrain exceeds the scalar level the grid box is fully
1134	!-- terrain and the maximum terrain is set to the zw level.
1135	!-- terrain or
1136	oro_max_l = 0.0
1137	DO nr = 1, dim_builds
1138	DO k = nzb, nzt
1139	IF ( zu(k) - ocean_offset <= oro_max(nr) ) oro_max_l(nr) = zw(k) - ocean_offset
1140	ENDDO
1141	oro_max(nr) = oro_max_l(nr)
1142	ENDDO
1143	ENDIF
1144	!
1145	!-- Allocate array for storing terrain height under buildings
1146	IF ( buildings_f%from_file ) THEN
1147	ALLOCATE( buildings_f%oro_max(nysg:nyng,nxlg:nxrg) )
1148	buildings_f%oro_max = buildings_f%fill1
1149	END IF
1150	!
1151	!-- Map orography as well as buildings onto grid.
1152	DO i = nxl, nxr
1153	DO j = nys, nyn
1154	topo_top_index = 0
1155	!
1156	!-- Obtain index in global building_id array
1157	IF ( buildings_f%from_file ) THEN
1158	IF ( building_id_f%var(j,i) /= building_id_f%fill ) THEN
1159	!
1160	!-- Determine index where maximum terrain height occupied by the respective building
1161	!-- height is stored.
1162	nr = MINLOC( ABS( build_ids_final - building_id_f%var(j,i) ), DIM=1 )
1163	!
1164	!-- Save grid-indexed oro_max
1165	buildings_f%oro_max(j,i) = oro_max(nr)
1166	ENDIF
1167	ENDIF
1168	DO k = nzb, nzt
1169	!
1170	!-- In a first step, if grid point is below or equal the given terrain height, grid
1171	!-- point is flagged to be of type natural.
1172	!-- Please note, in case there is also a building which is lower than the vertical grid
1173	!-- spacing, initialization of surface attributes will not be correct as given surface
1174	!-- information will not be in accordance to the classified grid points.
1175	!-- Hence, in this case, also a building flag.
1176	IF ( zu(k) - ocean_offset <= terrain_height_f%var(j,i) ) THEN
1177	topo_3d(k,j,i) = IBCLR( topo_3d(k,j,i), 0 )
1178	topo_3d(k,j,i) = IBSET( topo_3d(k,j,i), 1 )
1179	topo_top_index = k ! topo_top_index + 1
1180	ENDIF
1181	!
1182	!-- Set building grid points. Here, only consider 2D buildings.
1183	!-- 3D buildings require separate treatment.
1184	IF ( buildings_f%from_file .AND. buildings_f%lod == 1 ) THEN
1185	!
1186	!-- Fill-up the terrain to the level of maximum orography within the building-covered
1187	!-- area.
1188	IF ( building_id_f%var(j,i) /= building_id_f%fill ) THEN
1189	!
1190	!-- Note, oro_max is always on zw level
1191	IF ( zu(k) - ocean_offset < oro_max(nr) ) THEN
1192	topo_3d(k,j,i) = IBCLR( topo_3d(k,j,i), 0 )
1193	topo_3d(k,j,i) = IBSET( topo_3d(k,j,i), 1 )
1194	ELSEIF ( zu(k) - ocean_offset <= oro_max(nr) + buildings_f%var_2d(j,i) ) THEN
1195	topo_3d(k,j,i) = IBCLR( topo_3d(k,j,i), 0 )
1196	topo_3d(k,j,i) = IBSET( topo_3d(k,j,i), 2 )
1197	ENDIF
1198	ENDIF
1199	ENDIF
1200	ENDDO
1201	!
1202	!-- Special treatment for non grid-resolved buildings. This case, the uppermost terrain
1203	!-- grid point is flagged as building as well, even though no building exists at all.
1204	!-- However, the surface element will be identified as urban-surface and the input data
1205	!-- provided by the drivers is consistent to the surface classification. Else, all non
1206	!-- grid-resolved buildings would vanish and identified as terrain grid points, which,
1207	!-- however, won't be consistent with the input data.
1208	IF ( buildings_f%from_file .AND. buildings_f%lod == 1 ) THEN
1209	IF ( building_id_f%var(j,i) /= building_id_f%fill ) THEN
1210	DO k = nzb, nzt
1211	IF( zw(k) - ocean_offset == oro_max(nr) ) THEN
1212	IF ( buildings_f%var_2d(j,i) <= zu(k+1) - zw(k) ) THEN
1213	topo_3d(k,j,i) = IBSET( topo_3d(k,j,i), 2 )
1214	ENDIF
1215	ENDIF
1216	ENDDO
1217	ENDIF
1218	ENDIF
1219	!
1220	!-- Map 3D buildings onto terrain height.
1221	!-- In case of any slopes, map building on top of maximum terrain height covered by the
1222	!-- building. In other words, extend building down to the respective local terrain-surface
1223	!-- height.
1224	IF ( buildings_f%from_file .AND. buildings_f%lod == 2 ) THEN
1225	IF ( building_id_f%var(j,i) /= building_id_f%fill ) THEN
1226	!
1227	!-- Extend building down to the terrain surface, i.e. fill-up surface irregularities
1228	!-- below a building. Note, oro_max is already a discrete height according to the
1229	!-- all-or-nothing approach, i.e. grid box is either topography or atmosphere,
1230	!-- terrain top is defined at upper bound of the grid box.
1231	!-- Hence, check for zw in this case.
1232	!-- Note, do this only for buildings which are surface mounted, i.e. building types
1233	!-- 1-6. Below bridges, which are represented exclusively by building type 7, terrain
1234	!-- shape should be maintained.
1235	IF ( building_type_f%from_file ) THEN
1236	IF ( building_type_f%var(j,i) /= 7 ) THEN
1237	DO k = topo_top_index + 1, nzt + 1
1238	IF ( zu(k) - ocean_offset <= oro_max(nr) ) THEN
1239	topo_3d(k,j,i) = IBCLR( topo_3d(k,j,i), 0 )
1240	topo_3d(k,j,i) = IBSET( topo_3d(k,j,i), 1 )
1241	ENDIF
1242	ENDDO
1243	!
1244	!-- After surface irregularities are smoothen, determine lower start index
1245	!-- where building starts.
1246	DO k = nzb, nzt
1247	IF ( zu(k) - ocean_offset <= oro_max(nr) ) topo_top_index = k
1248	ENDDO
1249	ENDIF
1250	ENDIF
1251	!
1252	!-- Finally, map building on top.
1253	k2 = 0
1254	DO k = topo_top_index, nzt + 1
1255	IF ( k2 <= buildings_f%nz-1 ) THEN
1256	IF ( buildings_f%var_3d(k2,j,i) == 1 ) THEN
1257	topo_3d(k,j,i) = IBCLR( topo_3d(k,j,i), 0 )
1258	topo_3d(k,j,i) = IBSET( topo_3d(k,j,i), 2 )
1259	ENDIF
1260	ENDIF
1261	k2 = k2 + 1
1262	ENDDO
1263	ENDIF
1264	ENDIF
1265	ENDDO
1266	ENDDO
1267	!
1268	!-- Horizontal exchange the oro_max array, which is required to for initialization of
1269	!-- building-surface properties.
1270	IF ( ALLOCATED( buildings_f%oro_max ) ) THEN
1271	CALL exchange_horiz_2d( buildings_f%oro_max(:,:) )
1272	ENDIF
1273	!
1274	!-- Deallocate temporary arrays required for processing and reading data
1275	IF ( ALLOCATED( oro_max ) ) DEALLOCATE( oro_max )
1276	IF ( ALLOCATED( oro_max_l ) ) DEALLOCATE( oro_max_l )
1277	IF ( ALLOCATED( build_ids_final ) ) DEALLOCATE( build_ids_final )
1278	!
1279	!-- Topography input via ASCII format.
1280	ELSE
1281
1282	ocean_offset = MERGE( zw(0), 0.0_wp, ocean_mode )
1283	!
1284	!-- Initialize topography bit 0 (indicates obstacle) everywhere to zero and clear all grid points
1285	!-- at nzb, where alway a surface is defined.
1286	!-- Further, set also bit 1 (indicates terrain) at nzb, which is further used for masked data
1287	!-- output and further processing. Note, in the ASCII case no distinction is made between
1288	!-- buildings and terrain, so that setting of bit 1 and 2 at the same time has no effect.
1289	topo_3d = IBSET( topo_3d, 0 )
1290	topo_3d(nzb,:,:) = IBCLR( topo_3d(nzb,:,:), 0 )
1291	topo_3d(nzb,:,:) = IBSET( topo_3d(nzb,:,:), 1 )
1292	DO i = nxl, nxr
1293	DO j = nys, nyn
1294	DO k = nzb, nzt
1295	!
1296	!-- Flag topography for all grid points which are below the local topography height.
1297	!-- Note, each topography is flagged as building (bit 2) as well as terrain (bit 1) in
1298	!-- order to employ urban-surface as well as land-surface model.
1299	IF ( zu(k) - ocean_offset <= buildings_f%var_2d(j,i) ) THEN
1300	topo_3d(k,j,i) = IBCLR( topo_3d(k,j,i), 0 )
1301	topo_3d(k,j,i) = IBCLR( topo_3d(k,j,i), 1 )
1302	topo_3d(k,j,i) = IBSET( topo_3d(k,j,i), 2 )
1303	ENDIF
1304	ENDDO
1305	ENDDO
1306	ENDDO
1307
1308	ENDIF
1309
1310	CALL exchange_horiz_int( topo_3d, nys, nyn, nxl, nxr, nzt, nbgp )
1311
1312	IF ( .NOT. bc_ns_cyc ) THEN
1313	IF ( nys == 0 ) topo_3d(:,-1,:) = topo_3d(:,0,:)
1314	IF ( nyn == ny ) topo_3d(:,ny+1,:) = topo_3d(:,ny,:)
1315	ENDIF
1316
1317	IF ( .NOT. bc_lr_cyc ) THEN
1318	IF ( nxl == 0 ) topo_3d(:,:,-1) = topo_3d(:,:,0)
1319	IF ( nxr == nx ) topo_3d(:,:,nx+1) = topo_3d(:,:,nx)
1320	ENDIF
1321
1322	END SUBROUTINE process_topography
1323
1324
1325	! Description:
1326	! -------------------------------------------------------------------------------------------------!
1327	!> Filter topography, i.e. fill holes resolved by only one grid point.
1328	!> Such holes are suspected to lead to velocity blow-ups as continuity equation on discrete grid
1329	!> cannot be fulfilled in such case.
1330	!--------------------------------------------------------------------------------------------------!
1331	SUBROUTINE filter_topography( topo_3d )
1332
1333	USE control_parameters, &
1334	ONLY: bc_lr_cyc, bc_ns_cyc, message_string
1335
1336	USE exchange_horiz_mod, &
1337	ONLY: exchange_horiz_int, exchange_horiz_2d_byte, exchange_horiz_2d_int
1338
1339	USE indices, &
1340	ONLY: nbgp, nx, nxl, nxlg, nxr, nxrg, ny, nyn, nyng, nys, nysg, nzb, nzt
1341
1342	USE netcdf_data_input_mod, &
1343	ONLY: building_id_f, building_type_f
1344
1345	USE pegrid
1346
1347	IMPLICIT NONE
1348
1349	INTEGER(iwp) :: i !< running index along x-direction
1350	INTEGER(iwp) :: j !< running index along y-direction
1351	INTEGER(iwp) :: k !< running index along z-direction
1352	INTEGER(iwp) :: num_hole !< number of holes (in topography) resolved by only one grid point
1353	INTEGER(iwp) :: num_hole_l !< number of holes (in topography) resolved by only one grid point on local PE
1354	INTEGER(iwp) :: num_wall !< number of surrounding vertical walls for a single grid point
1355
1356	INTEGER(iwp), DIMENSION(:,:,:), ALLOCATABLE :: topo_tmp !< temporary 3D-topography used to fill holes
1357	INTEGER(iwp), DIMENSION(nzb:nzt+1,nysg:nyng,nxlg:nxrg) :: topo_3d !< 3D-topography array merging buildings and
1358	!< orography
1359
1360	LOGICAL :: filled = .FALSE. !< flag indicating if holes were filled
1361
1362	!
1363	!-- Before checking for holes, set lateral boundary conditions for
1364	!-- topography. After hole-filling, boundary conditions must be set again.
1365	!-- Several iterations are performed, in order to fill holes which might
1366	!-- emerge by the filling-algorithm itself.
1367	ALLOCATE( topo_tmp(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
1368	topo_tmp = 0
1369
1370	num_hole = 99999
1371	DO WHILE ( num_hole > 0 )
1372
1373	num_hole = 0
1374	CALL exchange_horiz_int( topo_3d, nys, nyn, nxl, nxr, nzt, nbgp )
1375	!
1376	!-- Exchange also building ID and type. Note, building_type is an one-byte variable.
1377	IF ( building_id_f%from_file ) &
1378	CALL exchange_horiz_2d_int( building_id_f%var, nys, nyn, nxl, nxr, nbgp )
1379	IF ( building_type_f%from_file ) &
1380	CALL exchange_horiz_2d_byte( building_type_f%var, nys, nyn, nxl, nxr, nbgp )
1381
1382	topo_tmp = topo_3d
1383	!
1384	!-- In case of non-cyclic lateral boundaries, assume lateral boundary to be a solid wall. Thus,
1385	!-- intermediate spaces of one grid point between boundary and some topographic structure will be
1386	!-- filled.
1387	IF ( .NOT. bc_ns_cyc ) THEN
1388	IF ( nys == 0 ) topo_tmp(:,-1,:) = IBCLR( topo_tmp(:,0,:), 0 )
1389	IF ( nyn == ny ) topo_tmp(:,ny+1,:) = IBCLR( topo_tmp(:,ny,:), 0 )
1390	ENDIF
1391
1392	IF ( .NOT. bc_lr_cyc ) THEN
1393	IF ( nxl == 0 ) topo_tmp(:,:,-1) = IBCLR( topo_tmp(:,:,0), 0 )
1394	IF ( nxr == nx ) topo_tmp(:,:,nx+1) = IBCLR( topo_tmp(:,:,nx), 0 )
1395	ENDIF
1396
1397	num_hole_l = 0
1398	DO i = nxl, nxr
1399	DO j = nys, nyn
1400	DO k = nzb+1, nzt
1401	IF ( BTEST( topo_tmp(k,j,i), 0 ) ) THEN
1402	num_wall = 0
1403	IF ( .NOT. BTEST( topo_tmp(k,j-1,i), 0 ) ) num_wall = num_wall + 1
1404	IF ( .NOT. BTEST( topo_tmp(k,j+1,i), 0 ) ) num_wall = num_wall + 1
1405	IF ( .NOT. BTEST( topo_tmp(k,j,i-1), 0 ) ) num_wall = num_wall + 1
1406	IF ( .NOT. BTEST( topo_tmp(k,j,i+1), 0 ) ) num_wall = num_wall + 1
1407	IF ( .NOT. BTEST( topo_tmp(k-1,j,i), 0 ) ) num_wall = num_wall + 1
1408	IF ( .NOT. BTEST( topo_tmp(k+1,j,i), 0 ) ) num_wall = num_wall + 1
1409
1410	IF ( num_wall >= 4 ) THEN
1411	num_hole_l = num_hole_l + 1
1412	!
1413	!-- Clear flag 0 and set special flag ( bit 4) to indicate that new topography
1414	!-- point is a result of filtering process.
1415	topo_3d(k,j,i) = IBCLR( topo_3d(k,j,i), 0 )
1416	topo_3d(k,j,i) = IBSET( topo_3d(k,j,i), 4 )
1417	!
1418	!-- If filled grid point is occupied by a building, classify it as building grid
1419	!-- point.
1420	IF ( building_type_f%from_file ) THEN
1421	IF ( building_type_f%var(j,i) /= building_type_f%fill .OR. &
1422	building_type_f%var(j+1,i) /= building_type_f%fill .OR. &
1423	building_type_f%var(j-1,i) /= building_type_f%fill .OR. &
1424	building_type_f%var(j,i+1) /= building_type_f%fill .OR. &
1425	building_type_f%var(j,i-1) /= building_type_f%fill ) THEN
1426	!
1427	!-- Set flag indicating building surfaces
1428	topo_3d(k,j,i) = IBSET( topo_3d(k,j,i), 2 )
1429	!
1430	!-- Set building_type and ID at this position if not already set. This is
1431	!-- required for proper initialization of urban-surface energy balance
1432	!-- solver.
1433	IF ( building_type_f%var(j,i) == building_type_f%fill ) THEN
1434
1435	IF ( building_type_f%var(j+1,i) /= building_type_f%fill ) THEN
1436	building_type_f%var(j,i) = building_type_f%var(j+1,i)
1437	building_id_f%var(j,i) = building_id_f%var(j+1,i)
1438	ELSEIF ( building_type_f%var(j-1,i) /= building_type_f%fill ) THEN
1439	building_type_f%var(j,i) = building_type_f%var(j-1,i)
1440	building_id_f%var(j,i) = building_id_f%var(j-1,i)
1441	ELSEIF ( building_type_f%var(j,i+1) /= building_type_f%fill ) THEN
1442	building_type_f%var(j,i) = building_type_f%var(j,i+1)
1443	building_id_f%var(j,i) = building_id_f%var(j,i+1)
1444	ELSEIF ( building_type_f%var(j,i-1) /= building_type_f%fill ) THEN
1445	building_type_f%var(j,i) = building_type_f%var(j,i-1)
1446	building_id_f%var(j,i) = building_id_f%var(j,i-1)
1447	ENDIF
1448	ENDIF
1449	ENDIF
1450	ENDIF
1451	!
1452	!-- If filled grid point is already classified as building everything is fine,
1453	!-- else classify this grid point as natural type grid point. This case, values
1454	!-- for the surface type are already set.
1455	IF ( .NOT. BTEST( topo_3d(k,j,i), 2 ) ) THEN
1456	topo_3d(k,j,i) = IBSET( topo_3d(k,j,i), 1 )
1457	ENDIF
1458	ENDIF
1459	ENDIF
1460	ENDDO
1461	ENDDO
1462	ENDDO
1463	!
1464	!-- Count the total number of holes, required for informative message.
1465	#if defined( __parallel )
1466	CALL MPI_ALLREDUCE( num_hole_l, num_hole, 1, MPI_INTEGER, MPI_SUM, comm2d, ierr )
1467	#else
1468	num_hole = num_hole_l
1469	#endif
1470	IF ( num_hole > 0 .AND. .NOT. filled ) filled = .TRUE.
1471
1472	ENDDO
1473	!
1474	!-- Create an informative message if any holes were filled.
1475	IF ( filled ) THEN
1476	WRITE( message_string, * ) 'Topography was filtered, i.e. holes ' // &
1477	'resolved by only one grid point ' // &
1478	'were filled during initialization.'
1479	CALL message( 'init_grid', 'PA0430', 0, 0, 0, 6, 0 )
1480	ENDIF
1481
1482	DEALLOCATE( topo_tmp )
1483	!
1484	!-- Finally, exchange topo_3d array again and if necessary set Neumann boundary condition in case of
1485	!-- non-cyclic lateral boundaries.
1486	CALL exchange_horiz_int( topo_3d, nys, nyn, nxl, nxr, nzt, nbgp )
1487
1488	IF ( .NOT. bc_ns_cyc ) THEN
1489	IF ( nys == 0 ) topo_3d(:,-1,:) = topo_3d(:,0,:)
1490	IF ( nyn == ny ) topo_3d(:,ny+1,:) = topo_3d(:,ny,:)
1491	ENDIF
1492
1493	IF ( .NOT. bc_lr_cyc ) THEN
1494	IF ( nxl == 0 ) topo_3d(:,:,-1) = topo_3d(:,:,0)
1495	IF ( nxr == nx ) topo_3d(:,:,nx+1) = topo_3d(:,:,nx)
1496	ENDIF
1497	!
1498	!-- Exchange building ID and type. Note, building_type is an one-byte variable.
1499	IF ( building_id_f%from_file ) &
1500	CALL exchange_horiz_2d_int( building_id_f%var, nys, nyn, nxl, nxr, nbgp )
1501	IF ( building_type_f%from_file ) &
1502	CALL exchange_horiz_2d_byte( building_type_f%var, nys, nyn, nxl, nxr, nbgp )
1503
1504	END SUBROUTINE filter_topography
1505
1506
1507	! Description:
1508	! -------------------------------------------------------------------------------------------------!
1509	!> Reads topography information from file or sets generic topography. Moreover, all
1510	!> topography-relevant topography arrays are initialized, and grid flags are set.
1511	!--------------------------------------------------------------------------------------------------!
1512	SUBROUTINE init_topo( topo )
1513
1514	USE arrays_3d, &
1515	ONLY: zw
1516
1517	USE control_parameters, &
1518	ONLY: bc_lr_cyc, bc_ns_cyc, building_height, building_length_x, building_length_y, &
1519	building_wall_left, building_wall_south, canyon_height, canyon_wall_left, &
1520	canyon_wall_south, canyon_width_x, canyon_width_y, dp_level_ind_b, dz, &
1521	message_string, topography, topography_grid_convention, tunnel_height, &
1522	tunnel_length, tunnel_width_x, tunnel_width_y, tunnel_wall_depth
1523
1524	USE exchange_horiz_mod, &
1525	ONLY: exchange_horiz_int
1526
1527	USE grid_variables, &
1528	ONLY: dx, dy
1529
1530	USE indices, &
1531	ONLY: nbgp, nx, nxl, nxlg, nxr, nxrg, ny, nyn, nyng, nys, nysg, nz, nzb, nzt
1532
1533	USE kinds
1534
1535	USE netcdf_data_input_mod, &
1536	ONLY: buildings_f, terrain_height_f
1537
1538	USE pegrid
1539
1540	IMPLICIT NONE
1541
1542	INTEGER(iwp) :: bh !< temporary vertical index of building height
1543	INTEGER(iwp) :: ch !< temporary vertical index for canyon height
1544	INTEGER(iwp) :: hv_in !< heavyside function to model inner tunnel surface
1545	INTEGER(iwp) :: i !< index variable along x
1546	INTEGER(iwp) :: index_left_bwall !< index for left building wall
1547	INTEGER(iwp) :: index_north_bwall !< index for north building wall
1548	INTEGER(iwp) :: index_right_bwall !< index for right building wall
1549	INTEGER(iwp) :: index_south_bwall !< index for south building wall
1550	INTEGER(iwp) :: index_left_cwall !< index for left canyon wall
1551	INTEGER(iwp) :: index_north_cwall !< index for north canyon wall
1552	INTEGER(iwp) :: index_right_cwall !< index for right canyon wall
1553	INTEGER(iwp) :: index_south_cwall !< index for south canyon wall
1554	INTEGER(iwp) :: j !< index variable along y
1555	INTEGER(iwp) :: k !< index variable along z
1556	INTEGER(iwp) :: ngp_bx !< grid point number of building size along x
1557	INTEGER(iwp) :: ngp_by !< grid point number of building size along y
1558	INTEGER(iwp) :: ngp_cx !< grid point number of canyon size along x
1559	INTEGER(iwp) :: ngp_cy !< grid point number of canyon size along y
1560	INTEGER(iwp) :: hv_out !< heavyside function to model outer tunnel surface
1561	INTEGER(iwp) :: td !< tunnel wall depth
1562	INTEGER(iwp) :: th !< height of outer tunnel wall
1563	INTEGER(iwp) :: txe_in !< end position of inner tunnel wall in x
1564	INTEGER(iwp) :: txe_out !< end position of outer tunnel wall in x
1565	INTEGER(iwp) :: txs_in !< start position of inner tunnel wall in x
1566	INTEGER(iwp) :: txs_out !< start position of outer tunnel wall in x
1567	INTEGER(iwp) :: tye_in !< end position of inner tunnel wall in y
1568	INTEGER(iwp) :: tye_out !< end position of outer tunnel wall in y
1569	INTEGER(iwp) :: tys_in !< start position of inner tunnel wall in y
1570	INTEGER(iwp) :: tys_out !< start position of outer tunnel wall in y
1571
1572	INTEGER(iwp), DIMENSION(:,:), ALLOCATABLE :: nzb_local !< index for topography top at cell-center
1573	INTEGER(iwp), DIMENSION(nzb:nzt+1,nysg:nyng,nxlg:nxrg) :: topo !< input array for 3D topography and dummy array for setting
1574	!< "outer"-flags
1575	!
1576	!-- Check for correct setting of the namelist parameter topography. If topography information is
1577	!-- read from file but topography = 'flat', initialization does not work properly.
1578	IF ( ( buildings_f%from_file .OR. terrain_height_f%from_file ) .AND. &
1579	TRIM( topography ) /= 'read_from_file' ) THEN
1580	message_string = 'If topography information is provided (via ' // &
1581	'Netcdf or ASCII input) topography = ' // &
1582	'"read_from_file" is required.'
1583	CALL message( 'init_grid', 'PA0437', 1, 2, 0, 6, 0 )
1584	ENDIF
1585	!
1586	!-- Set outer and inner index arrays for non-flat topography.
1587	!-- Here consistency checks concerning domain size and periodicity are necessary.
1588	!-- Within this SELECT CASE structure only nzb_local is initialized individually depending on the
1589	!-- chosen topography type, all other index arrays are initialized further below.
1590	SELECT CASE ( TRIM( topography ) )
1591
1592	CASE ( 'flat' )
1593	!
1594	!-- Initialilize 3D topography array, used later for initializing flags
1595	topo(nzb+1:nzt+1,:,:) = IBSET( topo(nzb+1:nzt+1,:,:), 0 )
1596
1597	CASE ( 'closed_channel' )
1598	!
1599	!-- Initialilize 3D topography array, used later for initializing flags
1600	topo(nzb+1:nzt,:,:) = IBSET( topo(nzb+1:nzt,:,:), 0 )
1601
1602	CASE ( 'single_building' )
1603	!
1604	!-- Single rectangular building, by default centered in the middle of the
1605	!-- total domain
1606	ngp_bx = NINT( building_length_x / dx )
1607	ngp_by = NINT( building_length_y / dy )
1608	bh = MINLOC( ABS( zw - building_height ), 1 ) - 1
1609	IF ( ABS( zw(bh) - building_height ) == ABS( zw(bh+1) - building_height ) ) bh = bh + 1
1610	IF ( building_wall_left == 9999999.9_wp ) THEN
1611	building_wall_left = ( nx + 1 - ngp_bx ) / 2 * dx
1612	ENDIF
1613	index_left_bwall = NINT( building_wall_left / dx )
1614	index_right_bwall = index_left_bwall + ngp_bx
1615
1616	IF ( building_wall_south == 9999999.9_wp ) THEN
1617	building_wall_south = ( ny + 1 - ngp_by ) / 2 * dy
1618	ENDIF
1619	index_south_bwall = NINT( building_wall_south / dy )
1620	index_north_bwall = index_south_bwall + ngp_by
1621
1622	!
1623	!-- Building size has to meet some requirements
1624	IF ( ( index_left_bwall < 1 ) .OR. ( index_right_bwall > nx-1 ) .OR. &
1625	( index_right_bwall < index_left_bwall+3 ) .OR. &
1626	( index_south_bwall < 1 ) .OR. ( index_north_bwall > ny-1 ) .OR. &
1627	( index_north_bwall < index_south_bwall+3 ) ) THEN
1628	WRITE( message_string, * ) 'inconsistent building parameters:', &
1629	'&index_left_bwall=', index_left_bwall, &
1630	'index_right_bwall=', index_right_bwall, &
1631	'index_south_bwall=', index_south_bwall, &
1632	'index_north_bwall=', index_north_bwall, &
1633	'nx=', nx, 'ny=', ny
1634	CALL message( 'init_grid', 'PA0203', 1, 2, 0, 6, 0 )
1635	ENDIF
1636
1637	ALLOCATE( nzb_local(nysg:nyng,nxlg:nxrg) )
1638	nzb_local = 0
1639	!
1640	!-- Define the building.
1641	IF ( index_left_bwall <= nxr .AND. index_right_bwall >= nxl .AND. &
1642	index_south_bwall <= nyn .AND. index_north_bwall >= nys ) &
1643	nzb_local(MAX(nys,index_south_bwall):MIN(nyn,index_north_bwall), &
1644	MAX(nxl,index_left_bwall):MIN(nxr,index_right_bwall)) = bh
1645	!
1646	!-- Set bit array on basis of nzb_local
1647	DO i = nxl, nxr
1648	DO j = nys, nyn
1649	topo(nzb_local(j,i)+1:nzt+1,j,i) = IBSET( topo(nzb_local(j,i)+1:nzt+1,j,i), 0 )
1650	ENDDO
1651	ENDDO
1652
1653	DEALLOCATE( nzb_local )
1654
1655	CALL exchange_horiz_int( topo, nys, nyn, nxl, nxr, nzt, nbgp )
1656	!
1657	!-- Set boundary conditions also for flags. Can be interpreted as Neumannb oundary conditions
1658	!-- for topography.
1659	IF ( .NOT. bc_ns_cyc ) THEN
1660	IF ( nys == 0 ) THEN
1661	DO i = 1, nbgp
1662	topo(:,nys-i,:) = topo(:,nys,:)
1663	ENDDO
1664	ENDIF
1665	IF ( nyn == ny ) THEN
1666	DO i = 1, nbgp
1667	topo(:,nyn+i,:) = topo(:,nyn,:)
1668	ENDDO
1669	ENDIF
1670	ENDIF
1671	IF ( .NOT. bc_lr_cyc ) THEN
1672	IF ( nxl == 0 ) THEN
1673	DO i = 1, nbgp
1674	topo(:,:,nxl-i) = topo(:,:,nxl)
1675	ENDDO
1676	ENDIF
1677	IF ( nxr == nx ) THEN
1678	DO i = 1, nbgp
1679	topo(:,:,nxr+i) = topo(:,:,nxr)
1680	ENDDO
1681	ENDIF
1682	ENDIF
1683
1684	CASE ( 'single_street_canyon' )
1685	!
1686	!-- Single quasi-2D street canyon of infinite length in x or y direction.
1687	!-- The canyon is centered in the other direction by default.
1688	IF ( canyon_width_x /= 9999999.9_wp ) THEN
1689	!
1690	!-- Street canyon in y direction
1691	ngp_cx = NINT( canyon_width_x / dx )
1692	IF ( canyon_wall_left == 9999999.9_wp ) THEN
1693	canyon_wall_left = ( nx + 1 - ngp_cx ) / 2 * dx
1694	ENDIF
1695	index_left_cwall= NINT( canyon_wall_left / dx )
1696	index_right_cwall= index_left_cwall+ ngp_cx
1697	ELSEIF ( canyon_width_y /= 9999999.9_wp ) THEN
1698	!
1699	!-- Street canyon in x direction
1700	ngp_cy = NINT( canyon_width_y / dy )
1701	IF ( canyon_wall_south == 9999999.9_wp ) THEN
1702	canyon_wall_south = ( ny + 1 - ngp_cy ) / 2 * dy
1703	ENDIF
1704	index_south_cwall = NINT( canyon_wall_south / dy )
1705	index_north_cwall = index_south_cwall + ngp_cy
1706
1707	ELSE
1708
1709	message_string = 'no street canyon width given'
1710	CALL message( 'init_grid', 'PA0204', 1, 2, 0, 6, 0 )
1711
1712	ENDIF
1713
1714	ch = MINLOC( ABS( zw - canyon_height ), 1 ) - 1
1715	IF ( ABS( zw(ch) - canyon_height ) == ABS( zw(ch+1) - canyon_height ) ) ch = ch + 1
1716	dp_level_ind_b = ch
1717	!
1718	!-- Street canyon size has to meet some requirements
1719	IF ( canyon_width_x /= 9999999.9_wp ) THEN
1720	IF ( ( index_left_cwall< 1 ) .OR. ( index_right_cwall> nx-1 ) .OR. &
1721	( ngp_cx < 3 ) ) THEN
1722	WRITE( message_string, * ) 'inconsistent canyon parameters:', &
1723	'&index_left_cwall=', index_left_cwall, &
1724	' index_right_cwall=', index_right_cwall, &
1725	' ngp_cx=', ngp_cx, ' ch=', ch, ' nx=', nx, ' ny=', ny
1726	CALL message( 'init_grid', 'PA0205', 1, 2, 0, 6, 0 )
1727	ENDIF
1728	ELSEIF ( canyon_width_y /= 9999999.9_wp ) THEN
1729	IF ( ( index_south_cwall < 1 ) .OR. &
1730	( index_north_cwall > ny-1 ) .OR. ( ngp_cy < 3 ) ) THEN
1731	WRITE( message_string, * ) 'inconsistent canyon parameters:', &
1732	'&index_south_cwall=', index_south_cwall, &
1733	' index_north_cwall=', index_north_cwall, &
1734	' ngp_cy=', ngp_cy, ' ch=', ch, ' nx=', nx, ' ny=', ny
1735	CALL message( 'init_grid', 'PA0206', 1, 2, 0, 6, 0 )
1736	ENDIF
1737	ENDIF
1738	IF ( canyon_width_x /= 9999999.9_wp .AND. canyon_width_y /= 9999999.9_wp ) THEN
1739	message_string = 'inconsistent canyon parameters:' // &
1740	'&street canyon can only be oriented' // &
1741	' either in x- or in y-direction'
1742	CALL message( 'init_grid', 'PA0207', 1, 2, 0, 6, 0 )
1743	ENDIF
1744
1745	ALLOCATE( nzb_local(nysg:nyng,nxlg:nxrg) )
1746	nzb_local = ch
1747	IF ( canyon_width_x /= 9999999.9_wp ) THEN
1748	IF ( index_left_cwall<= nxr .AND. index_right_cwall>= nxl ) &
1749	nzb_local(:,MAX(nxl,index_left_cwall+1):MIN(nxr,index_right_cwall-1)) = 0
1750	ELSEIF ( canyon_width_y /= 9999999.9_wp ) THEN
1751	IF ( index_south_cwall <= nyn .AND. index_north_cwall >= nys ) &
1752	nzb_local(MAX(nys,index_south_cwall+1):MIN(nyn,index_north_cwall-1),:) = 0
1753	ENDIF
1754	!
1755	!-- Set bit array on basis of nzb_local
1756	DO i = nxl, nxr
1757	DO j = nys, nyn
1758	topo(nzb_local(j,i)+1:nzt+1,j,i) = IBSET( topo(nzb_local(j,i)+1:nzt+1,j,i), 0 )
1759	ENDDO
1760	ENDDO
1761	DEALLOCATE( nzb_local )
1762
1763	CALL exchange_horiz_int( topo, nys, nyn, nxl, nxr, nzt, nbgp )
1764	!
1765	!-- Set boundary conditions also for flags. Can be interpreted as Neumann boundary conditions
1766	!-- for topography.
1767	IF ( .NOT. bc_ns_cyc ) THEN
1768	IF ( nys == 0 ) THEN
1769	DO i = 1, nbgp
1770	topo(:,nys-i,:) = topo(:,nys,:)
1771	ENDDO
1772	ENDIF
1773	IF ( nyn == ny ) THEN
1774	DO i = 1, nbgp
1775	topo(:,nyn+i,:) = topo(:,nyn,:)
1776	ENDDO
1777	ENDIF
1778	ENDIF
1779	IF ( .NOT. bc_lr_cyc ) THEN
1780	IF ( nxl == 0 ) THEN
1781	DO i = 1, nbgp
1782	topo(:,:,nxl-i) = topo(:,:,nxl)
1783	ENDDO
1784	ENDIF
1785	IF ( nxr == nx ) THEN
1786	DO i = 1, nbgp
1787	topo(:,:,nxr+i) = topo(:,:,nxr)
1788	ENDDO
1789	ENDIF
1790	ENDIF
1791
1792	CASE ( 'tunnel' )
1793	!
1794	!-- Tunnel height
1795	IF ( tunnel_height == 9999999.9_wp ) THEN
1796	th = zw( INT( 0.2 * nz) )
1797	ELSE
1798	th = tunnel_height
1799	ENDIF
1800	!
1801	!-- Tunnel-wall depth
1802	IF ( tunnel_wall_depth == 9999999.9_wp ) THEN
1803	td = MAX ( dx, dy, dz(1) )
1804	ELSE
1805	td = tunnel_wall_depth
1806	ENDIF
1807	!
1808	!-- Check for tunnel width
1809	IF ( tunnel_width_x == 9999999.9_wp .AND. tunnel_width_y == 9999999.9_wp ) THEN
1810	message_string = 'No tunnel width is given. '
1811	CALL message( 'init_grid', 'PA0280', 1, 2, 0, 6, 0 )
1812	ENDIF
1813	IF ( tunnel_width_x /= 9999999.9_wp .AND. tunnel_width_y /= 9999999.9_wp ) THEN
1814	message_string = 'Inconsistent tunnel parameters:' // &
1815	'tunnel can only be oriented' // &
1816	'either in x- or in y-direction.'
1817	CALL message( 'init_grid', 'PA0281', 1, 2, 0, 6, 0 )
1818	ENDIF
1819	!
1820	!-- Check for too small tunnel width in x- and y-direction
1821	IF ( tunnel_width_x /= 9999999.9_wp .AND. &
1822	tunnel_width_x - 2.0_wp * td <= 2.0_wp * dx ) THEN
1823	message_string = 'tunnel_width_x too small'
1824	CALL message( 'init_grid', 'PA0175', 1, 2, 0, 6, 0 )
1825	ENDIF
1826	IF ( tunnel_width_y /= 9999999.9_wp .AND. &
1827	tunnel_width_y - 2.0_wp * td <= 2.0_wp * dy ) THEN
1828	message_string = 'tunnel_width_y too small'
1829	CALL message( 'init_grid', 'PA0455', 1, 2, 0, 6, 0 )
1830	ENDIF
1831	!
1832	!-- Check for too large tunnel width.
1833	!-- Tunnel axis along y.
1834	IF ( tunnel_width_x /= 9999999.9_wp ) THEN
1835	IF ( tunnel_width_x > ( nx + 1 ) * dx ) THEN
1836	message_string = 'tunnel_width_x too large'
1837	CALL message( 'init_grid', 'PA0282', 1, 2, 0, 6, 0 )
1838	ENDIF
1839
1840	txs_out = INT( ( nx + 1 ) * 0.5_wp * dx - tunnel_width_x * 0.5_wp )
1841	txe_out = INT( ( nx + 1 ) * 0.5_wp * dx + tunnel_width_x * 0.5_wp )
1842	txs_in = INT( ( nx + 1 ) * 0.5_wp * dx - ( tunnel_width_x * 0.5_wp - td ) )
1843	txe_in = INT( ( nx + 1 ) * 0.5_wp * dx + ( tunnel_width_x * 0.5_wp - td ) )
1844
1845	tys_out = INT( ( ny + 1 ) * 0.5_wp * dy - tunnel_length * 0.5_wp )
1846	tye_out = INT( ( ny + 1 ) * 0.5_wp * dy + tunnel_length * 0.5_wp )
1847	tys_in = tys_out
1848	tye_in = tye_out
1849	ENDIF
1850	!
1851	!-- Tunnel axis along x.
1852	IF ( tunnel_width_y /= 9999999.9_wp ) THEN
1853	IF ( tunnel_width_y > ( ny + 1 ) * dy ) THEN
1854	message_string = 'tunnel_width_y too large'
1855	CALL message( 'init_grid', 'PA0456', 1, 2, 0, 6, 0 )
1856	ENDIF
1857
1858	txs_out = INT( ( nx + 1 ) * 0.5_wp * dx - tunnel_length * 0.5_wp )
1859	txe_out = INT( ( nx + 1 ) * 0.5_wp * dx + tunnel_length * 0.5_wp )
1860	txs_in = txs_out
1861	txe_in = txe_out
1862
1863	tys_out = INT( ( ny + 1 ) * 0.5_wp * dy - tunnel_width_y * 0.5_wp )
1864	tye_out = INT( ( ny + 1 ) * 0.5_wp * dy + tunnel_width_y * 0.5_wp )
1865	tys_in = INT( ( ny + 1 ) * 0.5_wp * dy - ( tunnel_width_y * 0.5_wp - td ) )
1866	tye_in = INT( ( ny + 1 ) * 0.5_wp * dy + ( tunnel_width_y * 0.5_wp - td ) )
1867	ENDIF
1868
1869	topo = 0
1870	DO i = nxl, nxr
1871	DO j = nys, nyn
1872	!
1873	!-- Use heaviside function to model outer tunnel surface
1874	hv_out = th * 0.5_wp * ( ( SIGN( 1.0_wp, i * dx - txs_out ) + 1.0_wp ) &
1875	- ( SIGN( 1.0_wp, i * dx - txe_out ) + 1.0_wp ) )
1876
1877	hv_out = hv_out * 0.5_wp * ( ( SIGN( 1.0_wp, j * dy - tys_out ) + 1.0_wp ) &
1878	- ( SIGN( 1.0_wp, j * dy - tye_out ) + 1.0_wp ) )
1879	!
1880	!-- Use heaviside function to model inner tunnel surface
1881	hv_in = ( th - td ) * 0.5_wp * ( ( SIGN( 1.0_wp, i * dx - txs_in ) + 1.0_wp ) &
1882	- ( SIGN( 1.0_wp, i * dx - txe_in ) + 1.0_wp ) )
1883
1884	hv_in = hv_in * 0.5_wp * ( ( SIGN( 1.0_wp, j * dy - tys_in ) + 1.0_wp ) &
1885	- ( SIGN( 1.0_wp, j * dy - tye_in ) + 1.0_wp ) )
1886	!
1887	!-- Set flags at x-y-positions without any tunnel surface
1888	IF ( hv_out - hv_in == 0.0_wp ) THEN
1889	topo(nzb+1:nzt+1,j,i) = IBSET( topo(nzb+1:nzt+1,j,i), 0 )
1890	!
1891	!-- Set flags at x-y-positions with tunnel surfaces
1892	ELSE
1893	DO k = nzb + 1, nzt + 1
1894	!
1895	!-- Inner tunnel
1896	IF ( hv_out - hv_in == th ) THEN
1897	IF ( zw(k) <= hv_out ) THEN
1898	topo(k,j,i) = IBCLR( topo(k,j,i), 0 )
1899	ELSE
1900	topo(k,j,i) = IBSET( topo(k,j,i), 0 )
1901	ENDIF
1902	ENDIF
1903	!
1904	!-- Lateral tunnel walls
1905	IF ( hv_out - hv_in == td ) THEN
1906	IF ( zw(k) <= hv_in ) THEN
1907	topo(k,j,i) = IBSET( topo(k,j,i), 0 )
1908	ELSEIF ( zw(k) > hv_in .AND. zw(k) <= hv_out ) THEN
1909	topo(k,j,i) = IBCLR( topo(k,j,i), 0 )
1910	ELSEIF ( zw(k) > hv_out ) THEN
1911	topo(k,j,i) = IBSET( topo(k,j,i), 0 )
1912	ENDIF
1913	ENDIF
1914	ENDDO
1915	ENDIF
1916	ENDDO
1917	ENDDO
1918
1919	CALL exchange_horiz_int( topo, nys, nyn, nxl, nxr, nzt, nbgp )
1920	!
1921	!-- Set boundary conditions also for flags. Can be interpreted as Neumann boundary conditions
1922	!-- for topography.
1923	IF ( .NOT. bc_ns_cyc ) THEN
1924	IF ( nys == 0 ) THEN
1925	DO i = 1, nbgp
1926	topo(:,nys-i,:) = topo(:,nys,:)
1927	ENDDO
1928	ENDIF
1929	IF ( nyn == ny ) THEN
1930	DO i = 1, nbgp
1931	topo(:,nyn+i,:) = topo(:,nyn,:)
1932	ENDDO
1933	ENDIF
1934	ENDIF
1935	IF ( .NOT. bc_lr_cyc ) THEN
1936	IF ( nxl == 0 ) THEN
1937	DO i = 1, nbgp
1938	topo(:,:,nxl-i) = topo(:,:,nxl)
1939	ENDDO
1940	ENDIF
1941	IF ( nxr == nx ) THEN
1942	DO i = 1, nbgp
1943	topo(:,:,nxr+i) = topo(:,:,nxr)
1944	ENDDO
1945	ENDIF
1946	ENDIF
1947
1948	CASE ( 'read_from_file' )
1949	!
1950	!-- Note, topography information have been already read.
1951	!-- If required, further process topography, i.e. reference buildings on top of orography and
1952	!-- set temporary 3D topography array, which is used later to set grid flags. Calling of this
1953	!-- rouinte is also required in case of ASCII input, even though no distinction between
1954	!-- terrain- and building height is made in this case.
1955	CALL process_topography( topo )
1956	!
1957	!-- Filter holes resolved by only one grid-point
1958	CALL filter_topography( topo )
1959	!
1960	!-- Exchange ghost-points, as well as add cyclic or Neumann boundary conditions.
1961	CALL exchange_horiz_int( topo, nys, nyn, nxl, nxr, nzt, nbgp )
1962	!
1963	!-- Set lateral boundary conditions for topography on all ghost layers
1964	IF ( .NOT. bc_ns_cyc ) THEN
1965	IF ( nys == 0 ) THEN
1966	DO i = 1, nbgp
1967	topo(:,nys-i,:) = topo(:,nys,:)
1968	ENDDO
1969	ENDIF
1970	IF ( nyn == ny ) THEN
1971	DO i = 1, nbgp
1972	topo(:,nyn+i,:) = topo(:,nyn,:)
1973	ENDDO
1974	ENDIF
1975	ENDIF
1976
1977	IF ( .NOT. bc_lr_cyc ) THEN
1978	IF ( nxl == 0 ) THEN
1979	DO i = 1, nbgp
1980	topo(:,:,nxl-i) = topo(:,:,nxl)
1981	ENDDO
1982	ENDIF
1983	IF ( nxr == nx ) THEN
1984	DO i = 1, nbgp
1985	topo(:,:,nxr+i) = topo(:,:,nxr)
1986	ENDDO
1987	ENDIF
1988	ENDIF
1989
1990
1991	CASE DEFAULT
1992	!
1993	!-- The DEFAULT case is reached either if the parameter topography contains a wrong character
1994	!-- string or if the user has defined a special case in the user interface. There, the
1995	!-- subroutine user_init_grid checks which of these two conditions applies.
1996	CALL user_init_grid( topo )
1997	CALL filter_topography( topo )
1998
1999	END SELECT
2000	!
2001	!-- Consistency checks and index array initialization are only required for non-flat topography.
2002	IF ( TRIM( topography ) /= 'flat' ) THEN
2003	!
2004	!-- In case of non-flat topography, check whether the convention how to define the topography
2005	!-- grid has been set correctly, or whether the default is applicable. If this is not possible,
2006	!-- abort.
2007	IF ( TRIM( topography_grid_convention ) == ' ' ) THEN
2008	IF ( TRIM( topography ) /= 'closed_channel' .AND. &
2009	TRIM( topography ) /= 'single_building' .AND. &
2010	TRIM( topography ) /= 'single_street_canyon' .AND. &
2011	TRIM( topography ) /= 'tunnel' .AND. &
2012	TRIM( topography ) /= 'read_from_file') THEN
2013	!-- The default value is not applicable here, because it is only valid for the four
2014	!-- standard cases 'single_building', 'single_street_canyon', 'tunnel' and 'read_from_file'
2015	!-- defined in init_grid.
2016	WRITE( message_string, * ) 'The value for "topography_grid_convention" ', &
2017	'is not set. Its default value is & only valid for ', &
2018	'"topography" = ''single_building'', ''tunnel'' ', &
2019	'''single_street_canyon'', ''closed_channel'' & or ', &
2020	'''read_from_file''.', &
2021	'& Choose ''cell_edge'' or ''cell_center''.'
2022	CALL message( 'init_grid', 'PA0239', 1, 2, 0, 6, 0 )
2023	ELSE
2024	!-- The default value is applicable here.
2025	!-- Set convention according to topography.
2026	IF ( TRIM( topography ) == 'single_building' .OR. &
2027	TRIM( topography ) == 'single_street_canyon' ) THEN
2028	topography_grid_convention = 'cell_edge'
2029	ELSEIF ( TRIM( topography ) == 'read_from_file' .OR. &
2030	TRIM( topography ) == 'tunnel') THEN
2031	topography_grid_convention = 'cell_center'
2032	ENDIF
2033	ENDIF
2034	ELSEIF ( TRIM( topography_grid_convention ) /= 'cell_edge' .AND. &
2035	TRIM( topography_grid_convention ) /= 'cell_center' ) THEN
2036	WRITE( message_string, * ) 'The value for "topography_grid_convention" is ', &
2037	'not recognized.& Choose ''cell_edge'' or ''cell_center''.'
2038	CALL message( 'init_grid', 'PA0240', 1, 2, 0, 6, 0 )
2039	ENDIF
2040
2041
2042	IF ( topography_grid_convention == 'cell_edge' ) THEN
2043	!
2044	!-- The array nzb_local as defined using the 'cell_edge' convention
2045	!-- describes the actual total size of topography which is defined at the
2046	!-- cell edges where u=0 on the topography walls in x-direction and v=0
2047	!-- on the topography walls in y-direction. However, PALM uses individual
2048	!-- arrays nzb_u\|v\|w\|s_inner\|outer that are based on nzb_s_inner.
2049	!-- Therefore, the extent of topography in nzb_local is now reduced by
2050	!-- 1dx at the E topography walls and by 1dy at the N topography walls
2051	!-- to form the basis for nzb_s_inner.
2052	!-- Note, the reverse memory access (i-j instead of j-i) is absolutely
2053	!-- required at this point.
2054	DO j = nys+1, nyn+1
2055	DO i = nxl-1, nxr
2056	DO k = nzb, nzt+1
2057	IF ( BTEST( topo(k,j,i), 0 ) .OR. BTEST( topo(k,j,i+1), 0 ) ) &
2058	topo(k,j,i) = IBSET( topo(k,j,i), 0 )
2059	ENDDO
2060	ENDDO
2061	ENDDO
2062	CALL exchange_horiz_int( topo, nys, nyn, nxl, nxr, nzt, nbgp )
2063
2064	DO i = nxl, nxr+1
2065	DO j = nys-1, nyn
2066	DO k = nzb, nzt+1
2067	IF ( BTEST( topo(k,j,i), 0 ) .OR. BTEST( topo(k,j+1,i), 0 ) ) &
2068	topo(k,j,i) = IBSET( topo(k,j,i), 0 )
2069	ENDDO
2070	ENDDO
2071	ENDDO
2072	CALL exchange_horiz_int( topo, nys, nyn, nxl, nxr, nzt, nbgp )
2073
2074	ENDIF
2075	ENDIF
2076
2077	END SUBROUTINE init_topo
2078
2079
2080	SUBROUTINE set_topo_flags(topo)
2081
2082	USE control_parameters, &
2083	ONLY: bc_lr_cyc, bc_ns_cyc, constant_flux_layer, scalar_advec, topography, &
2084	use_surface_fluxes, use_top_fluxes
2085
2086	USE exchange_horiz_mod, &
2087	ONLY: exchange_horiz_int
2088
2089	USE indices, &
2090	ONLY: nbgp, nx, nxl, nxlg, nxr, nxrg, ny, nyn, nyng, nys, nysg, nzb, nzt, topo_top_ind, &
2091	wall_flags_static_0, wall_flags_total_0
2092
2093	USE kinds
2094
2095	IMPLICIT NONE
2096
2097	INTEGER(iwp) :: i !< index variable along x
2098	INTEGER(iwp) :: ibit !< integer bit position of topgraphy masking array
2099	INTEGER(iwp) :: j !< index variable along y
2100	INTEGER(iwp) :: k !< index variable along z
2101
2102	INTEGER(iwp), DIMENSION(nzb:nzt+1,nysg:nyng,nxlg:nxrg) :: topo !< input array for 3D topography and dummy array for setting
2103	!< "outer"-flags
2104
2105	ALLOCATE( wall_flags_static_0(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
2106	wall_flags_static_0 = 0
2107	!
2108	!-- Set-up topography flags. First, set flags only for s, u, v and w-grid.
2109	!-- Further special flags will be set in following loops.
2110	DO i = nxl, nxr
2111	DO j = nys, nyn
2112	DO k = nzb, nzt+1
2113	!
2114	!-- scalar grid
2115	IF ( BTEST( topo(k,j,i), 0 ) ) &
2116	wall_flags_static_0(k,j,i) = IBSET( wall_flags_static_0(k,j,i), 0 )
2117	!
2118	!-- u grid
2119	IF ( BTEST( topo(k,j,i), 0 ) .AND. BTEST( topo(k,j,i-1), 0 ) ) &
2120	wall_flags_static_0(k,j,i) = IBSET( wall_flags_static_0(k,j,i), 1 )
2121	!
2122	!-- v grid
2123	IF ( BTEST( topo(k,j,i), 0 ) .AND. BTEST( topo(k,j-1,i), 0 ) ) &
2124	wall_flags_static_0(k,j,i) = IBSET( wall_flags_static_0(k,j,i), 2 )
2125
2126	ENDDO
2127
2128	DO k = nzb, nzt
2129	!
2130	!-- w grid
2131	IF ( BTEST( topo(k,j,i), 0 ) .AND. BTEST( topo(k+1,j,i), 0 ) ) &
2132	wall_flags_static_0(k,j,i) = IBSET( wall_flags_static_0(k,j,i), 3 )
2133	ENDDO
2134
2135	IF ( topography /= 'closed_channel' ) THEN
2136	wall_flags_static_0(nzt+1,j,i) = IBSET( wall_flags_static_0(nzt+1,j,i), 3 )
2137	ENDIF
2138
2139	ENDDO
2140	ENDDO
2141
2142	CALL exchange_horiz_int( wall_flags_static_0, nys, nyn, nxl, nxr, nzt, nbgp )
2143
2144	!
2145	!-- Set outer array for scalars to mask near-surface grid points. Note, on basis of flag 24 futher
2146	!-- flags will be derived which are used to control production of subgrid TKE production near walls.
2147	ALLOCATE( wall_flags_total_0(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
2148	wall_flags_total_0 = 0
2149
2150	DO i = nxl, nxr
2151	DO j = nys, nyn
2152	DO k = nzb, nzt+1
2153	wall_flags_total_0(k,j,i) = IOR( wall_flags_total_0(k,j,i), wall_flags_static_0(k,j,i) )
2154	ENDDO
2155	ENDDO
2156	ENDDO
2157
2158	CALL exchange_horiz_int( wall_flags_total_0, nys, nyn, nxl, nxr, nzt, nbgp )
2159
2160	DO i = nxl, nxr
2161	DO j = nys, nyn
2162	DO k = nzb, nzt+1
2163	IF ( BTEST( wall_flags_total_0(k,j-1,i), 0 ) .AND. &
2164	BTEST( wall_flags_total_0(k,j+1,i), 0 ) .AND. &
2165	BTEST( wall_flags_total_0(k,j,i-1), 0 ) .AND. &
2166	BTEST( wall_flags_total_0(k,j,i+1), 0 ) .AND. &
2167	BTEST( wall_flags_total_0(k,j-1,i-1), 0 ) .AND. &
2168	BTEST( wall_flags_total_0(k,j+1,i-1), 0 ) .AND. &
2169	BTEST( wall_flags_total_0(k,j-1,i+1), 0 ) .AND. &
2170	BTEST( wall_flags_total_0(k,j+1,i+1), 0 ) ) &
2171	wall_flags_total_0(k,j,i) = IBSET( wall_flags_total_0(k,j,i), 24 )
2172	ENDDO
2173	ENDDO
2174	ENDDO
2175	!
2176	!-- Set further special flags
2177	DO i = nxl, nxr
2178	DO j = nys, nyn
2179	DO k = nzb, nzt+1
2180	!
2181	!-- scalar grid, former nzb_diff_s_inner.
2182	!-- Note, use this flag also to mask topography in diffusion_u and diffusion_v along the
2183	!-- vertical direction. In case of use_surface_fluxes, fluxes are calculated via MOST,
2184	!-- else, simple gradient approach is applied. Please note, in case of u- and v-diffuison,
2185	!-- a small error is made at edges (on the east side for u, at the north side for v), since
2186	!-- topography on scalar grid point is used instead of topography on u/v-grid. As number of
2187	!-- topography grid points on uv-grid is different than s-grid, different number of surface
2188	!-- elements would be required. In order to avoid this, treat edges (u(k,j,i+1)) simply by
2189	!-- a gradient approach, i.e. these points are not masked within diffusion_u. Tests had
2190	!-- shown that the effect on the flow is negligible.
2191	IF ( constant_flux_layer .OR. use_surface_fluxes ) THEN
2192	IF ( BTEST( wall_flags_total_0(k,j,i), 0 ) ) &
2193	wall_flags_total_0(k,j,i) = IBSET( wall_flags_total_0(k,j,i), 8 )
2194	ELSE
2195	wall_flags_total_0(k,j,i) = IBSET( wall_flags_total_0(k,j,i), 8 )
2196	ENDIF
2197
2198	ENDDO
2199	!
2200	!-- Special flag to control vertical diffusion at model top - former nzt_diff
2201	wall_flags_total_0(:,j,i) = IBSET( wall_flags_total_0(:,j,i), 9 )
2202	IF ( use_top_fluxes ) &
2203	wall_flags_total_0(nzt+1,j,i) = IBCLR( wall_flags_total_0(nzt+1,j,i), 9 )
2204
2205
2206	DO k = nzb+1, nzt
2207	!
2208	!-- Special flag on u grid, former nzb_u_inner + 1, required for disturb_field and
2209	!-- initialization. Do not disturb directly at topography, as well as initialize u with
2210	!-- zero one grid point outside of topography.
2211	IF ( BTEST( wall_flags_total_0(k-1,j,i), 1 ) .AND. &
2212	BTEST( wall_flags_total_0(k,j,i), 1 ) .AND. &
2213	BTEST( wall_flags_total_0(k+1,j,i), 1 ) ) &
2214	wall_flags_total_0(k,j,i) = IBSET( wall_flags_total_0(k,j,i), 20 )
2215	!
2216	!-- Special flag on v grid, former nzb_v_inner + 1, required for disturb_field and
2217	!-- initialization. Do not disturb directly at topography, as well as initialize v with
2218	!-- zero one grid point outside of topography.
2219	IF ( BTEST( wall_flags_total_0(k-1,j,i), 2 ) .AND. &
2220	BTEST( wall_flags_total_0(k,j,i), 2 ) .AND. &
2221	BTEST( wall_flags_total_0(k+1,j,i), 2 ) ) &
2222	wall_flags_total_0(k,j,i) = IBSET( wall_flags_total_0(k,j,i), 21 )
2223	!
2224	!-- Special flag on scalar grid, former nzb_s_inner+1. Used for lpm_sgs_tke
2225	IF ( BTEST( wall_flags_total_0(k,j,i), 0 ) .AND. &
2226	BTEST( wall_flags_total_0(k-1,j,i), 0 ) .AND. &
2227	BTEST( wall_flags_total_0(k+1,j,i), 0 ) ) &
2228	wall_flags_total_0(k,j,i) = IBSET( wall_flags_total_0(k,j,i), 25 )
2229	!
2230	!-- Special flag on scalar grid, nzb_diff_s_outer - 1, required in in production_e
2231	IF ( constant_flux_layer .OR. use_surface_fluxes ) THEN
2232	IF ( BTEST( wall_flags_total_0(k,j,i), 24 ) .AND. &
2233	BTEST( wall_flags_total_0(k-1,j,i), 24 ) .AND. &
2234	BTEST( wall_flags_total_0(k+1,j,i), 0 ) ) &
2235	wall_flags_total_0(k,j,i) = IBSET( wall_flags_total_0(k,j,i), 29 )
2236	ELSE
2237	IF ( BTEST( wall_flags_total_0(k,j,i), 0 ) ) &
2238	wall_flags_total_0(k,j,i) = IBSET( wall_flags_total_0(k,j,i), 29 )
2239	ENDIF
2240	!
2241	!-- Special flag on scalar grid, nzb_diff_s_outer - 1, required in
2242	!-- in production_e
2243	IF ( constant_flux_layer .OR. use_surface_fluxes ) THEN
2244	IF ( BTEST( wall_flags_total_0(k,j,i), 0 ) .AND. &
2245	BTEST( wall_flags_total_0(k-1,j,i), 0 ) .AND. &
2246	BTEST( wall_flags_total_0(k+1,j,i), 0 ) ) &
2247	wall_flags_total_0(k,j,i) = IBSET( wall_flags_total_0(k,j,i), 30 )
2248	ELSE
2249	IF ( BTEST( wall_flags_total_0(k,j,i), 0 ) ) &
2250	wall_flags_total_0(k,j,i) = IBSET( wall_flags_total_0(k,j,i), 30 )
2251	ENDIF
2252	ENDDO
2253	!
2254	!-- Flags indicating downward facing walls
2255	DO k = nzb+1, nzt+1
2256	!
2257	!-- Scalar grid
2258	IF ( BTEST( wall_flags_total_0(k-1,j,i), 0 ) .AND. &
2259	.NOT. BTEST( wall_flags_total_0(k,j,i), 0 ) ) &
2260	wall_flags_total_0(k,j,i) = IBSET( wall_flags_total_0(k,j,i), 13 )
2261	!
2262	!-- Downward facing wall on u grid
2263	IF ( BTEST( wall_flags_total_0(k-1,j,i), 1 ) .AND. &
2264	.NOT. BTEST( wall_flags_total_0(k,j,i), 1 ) ) &
2265	wall_flags_total_0(k,j,i) = IBSET( wall_flags_total_0(k,j,i), 15 )
2266	!
2267	!-- Downward facing wall on v grid
2268	IF ( BTEST( wall_flags_total_0(k-1,j,i), 2 ) .AND. &
2269	.NOT. BTEST( wall_flags_total_0(k,j,i), 2 ) ) &
2270	wall_flags_total_0(k,j,i) = IBSET( wall_flags_total_0(k,j,i), 17 )
2271	!
2272	!-- Downward facing wall on w grid
2273	IF ( BTEST( wall_flags_total_0(k-1,j,i), 3 ) .AND. &
2274	.NOT. BTEST( wall_flags_total_0(k,j,i), 3 ) ) &
2275	wall_flags_total_0(k,j,i) = IBSET( wall_flags_total_0(k,j,i), 19 )
2276	ENDDO
2277	!
2278	!-- Flags indicating upward facing walls
2279	DO k = nzb, nzt
2280	!
2281	!-- Upward facing wall on scalar grid
2282	IF ( .NOT. BTEST( wall_flags_total_0(k,j,i), 0 ) .AND. &
2283	BTEST( wall_flags_total_0(k+1,j,i), 0 ) ) &
2284	wall_flags_total_0(k,j,i) = IBSET( wall_flags_total_0(k,j,i), 12 )
2285	!
2286	!-- Upward facing wall on u grid
2287	IF ( .NOT. BTEST( wall_flags_total_0(k,j,i), 1 ) .AND. &
2288	BTEST( wall_flags_total_0(k+1,j,i), 1 ) ) &
2289	wall_flags_total_0(k,j,i) = IBSET( wall_flags_total_0(k,j,i), 14 )
2290
2291	!
2292	!-- Upward facing wall on v grid
2293	IF ( .NOT. BTEST( wall_flags_total_0(k,j,i), 2 ) .AND. &
2294	BTEST( wall_flags_total_0(k+1,j,i), 2 ) ) &
2295	wall_flags_total_0(k,j,i) = IBSET( wall_flags_total_0(k,j,i), 16 )
2296
2297	!
2298	!-- Upward facing wall on w grid
2299	IF ( .NOT. BTEST( wall_flags_total_0(k,j,i), 3 ) .AND. &
2300	BTEST( wall_flags_total_0(k+1,j,i), 3 ) ) &
2301	wall_flags_total_0(k,j,i) = IBSET( wall_flags_total_0(k,j,i), 18 )
2302	!
2303	!-- Special flag on scalar grid, former nzb_s_inner
2304	IF ( BTEST( wall_flags_total_0(k,j,i), 0 ) .OR. &
2305	BTEST( wall_flags_total_0(k,j,i), 12 ) .OR. &
2306	BTEST( wall_flags_total_0(k,j,i), 13 ) ) &
2307	wall_flags_total_0(k,j,i) = IBSET( wall_flags_total_0(k,j,i), 22 )
2308	!
2309	!-- Special flag on scalar grid, nzb_diff_s_inner - 1, required for
2310	!-- flow_statistics
2311	IF ( constant_flux_layer .OR. use_surface_fluxes ) THEN
2312	IF ( BTEST( wall_flags_total_0(k,j,i), 0 ) .AND. &
2313	BTEST( wall_flags_total_0(k+1,j,i), 0 ) ) &
2314	wall_flags_total_0(k,j,i) = IBSET( wall_flags_total_0(k,j,i), 23 )
2315	ELSE
2316	IF ( BTEST( wall_flags_total_0(k,j,i), 22 ) ) &
2317	wall_flags_total_0(k,j,i) = IBSET( wall_flags_total_0(k,j,i), 23 )
2318	ENDIF
2319
2320
2321	ENDDO
2322	wall_flags_total_0(nzt+1,j,i) = IBSET( wall_flags_total_0(nzt+1,j,i), 22 )
2323	wall_flags_total_0(nzt+1,j,i) = IBSET( wall_flags_total_0(nzt+1,j,i), 23 )
2324	!
2325	!-- Set flags indicating that topography is close by in horizontal direction, i.e. flags that
2326	!-- infold the topography. These will be used to set advection flags for passive scalars,
2327	!-- where due to large gradients near buildings stationary numerical oscillations can produce
2328	!-- unrealistically high concentrations. This is only necessary if WS-scheme is applied for
2329	!-- scalar advection. Note, these flags will be only used for passive scalars such as chemical
2330	!-- species or aerosols.
2331	IF ( scalar_advec == 'ws-scheme' ) THEN
2332	DO k = nzb, nzt
2333	IF ( BTEST( wall_flags_total_0(k,j,i), 0 ) .AND. ( &
2334	ANY( .NOT. BTEST( wall_flags_total_0(k,j-3:j+3,i-1), 0 ) ) .OR. &
2335	ANY( .NOT. BTEST( wall_flags_total_0(k,j-3:j+3,i-2), 0 ) ) .OR. &
2336	ANY( .NOT. BTEST( wall_flags_total_0(k,j-3:j+3,i-3), 0 ) ) .OR. &
2337	ANY( .NOT. BTEST( wall_flags_total_0(k,j-3:j+3,i+1), 0 ) ) .OR. &
2338	ANY( .NOT. BTEST( wall_flags_total_0(k,j-3:j+3,i+2), 0 ) ) .OR. &
2339	ANY( .NOT. BTEST( wall_flags_total_0(k,j-3:j+3,i+3), 0 ) ) .OR. &
2340	ANY( .NOT. BTEST( wall_flags_total_0(k,j-1,i-3:i+3), 0 ) ) .OR. &
2341	ANY( .NOT. BTEST( wall_flags_total_0(k,j-2,i-3:i+3), 0 ) ) .OR. &
2342	ANY( .NOT. BTEST( wall_flags_total_0(k,j-3,i-3:i+3), 0 ) ) .OR. &
2343	ANY( .NOT. BTEST( wall_flags_total_0(k,j+1,i-3:i+3), 0 ) ) .OR. &
2344	ANY( .NOT. BTEST( wall_flags_total_0(k,j+2,i-3:i+3), 0 ) ) .OR. &
2345	ANY( .NOT. BTEST( wall_flags_total_0(k,j+3,i-3:i+3), 0 ) ) &
2346	) &
2347	) &
2348	wall_flags_total_0(k,j,i) = IBSET( wall_flags_total_0(k,j,i), 31 )
2349	ENDDO
2350	ENDIF
2351	ENDDO
2352	ENDDO
2353	!
2354	!-- Finally, set identification flags indicating natural terrain or buildings.
2355	!-- Natural terrain grid points. Information on the type of the surface is stored in bit 1 of
2356	!-- 3D Integer array topo. However, this bit is only set when topography is read from file. In order
2357	!-- to run the land-surface model also without topography information, set bit 1 explicitely in this
2358	!-- case.
2359	!--
2360	!-- Natural terrain grid points
2361	!-- If no topography is initialized, the land-surface is at k = nzb.
2362	IF ( TRIM( topography ) /= 'read_from_file' ) THEN
2363	wall_flags_static_0(nzb,:,:) = IBSET( wall_flags_static_0(nzb,:,:), 5 )
2364	ELSE
2365	DO i = nxl, nxr
2366	DO j = nys, nyn
2367	DO k = nzb, nzt+1
2368	!
2369	!-- Natural terrain grid point
2370	IF ( BTEST( topo(k,j,i), 1 ) ) &
2371	wall_flags_static_0(k,j,i) = IBSET( wall_flags_static_0(k,j,i), 5 )
2372	ENDDO
2373	ENDDO
2374	ENDDO
2375	ENDIF
2376	!
2377	!-- Building grid points.
2378	DO i = nxl, nxr
2379	DO j = nys, nyn
2380	DO k = nzb, nzt+1
2381	IF ( BTEST( topo(k,j,i), 2 ) ) &
2382	wall_flags_static_0(k,j,i) = IBSET( wall_flags_static_0(k,j,i), 6 )
2383	ENDDO
2384	ENDDO
2385	ENDDO
2386	!
2387	!-- Set flag 4, indicating new topography grid points due to filtering.
2388	DO i = nxl, nxr
2389	DO j = nys, nyn
2390	DO k = nzb, nzt+1
2391	IF ( BTEST( topo(k,j,i), 4 ) ) &
2392	wall_flags_static_0(k,j,i) = IBSET( wall_flags_static_0(k,j,i), 4 )
2393	ENDDO
2394	ENDDO
2395	ENDDO
2396
2397	CALL exchange_horiz_int( wall_flags_static_0, nys, nyn, nxl, nxr, nzt, nbgp )
2398
2399	DO i = nxl, nxr
2400	DO j = nys, nyn
2401	DO k = nzb, nzt+1
2402	wall_flags_total_0(k,j,i) = IOR( wall_flags_total_0(k,j,i), wall_flags_static_0(k,j,i) )
2403	ENDDO
2404	ENDDO
2405	ENDDO
2406	!
2407	!-- Exchange ghost points for wall flags
2408	CALL exchange_horiz_int( wall_flags_total_0, nys, nyn, nxl, nxr, nzt, nbgp )
2409	!
2410	!-- Set boundary conditions also for flags. Can be interpreted as Neumann boundary conditions for
2411	!-- topography.
2412	IF ( .NOT. bc_ns_cyc ) THEN
2413	IF ( nys == 0 ) THEN
2414	DO i = 1, nbgp
2415	wall_flags_total_0(:,nys-i,:) = wall_flags_total_0(:,nys,:)
2416	ENDDO
2417	ENDIF
2418	IF ( nyn == ny ) THEN
2419	DO i = 1, nbgp
2420	wall_flags_total_0(:,nyn+i,:) = wall_flags_total_0(:,nyn,:)
2421	ENDDO
2422	ENDIF
2423	ENDIF
2424	IF ( .NOT. bc_lr_cyc ) THEN
2425	IF ( nxl == 0 ) THEN
2426	DO i = 1, nbgp
2427	wall_flags_total_0(:,:,nxl-i) = wall_flags_total_0(:,:,nxl)
2428	ENDDO
2429	ENDIF
2430	IF ( nxr == nx ) THEN
2431	DO i = 1, nbgp
2432	wall_flags_total_0(:,:,nxr+i) = wall_flags_total_0(:,:,nxr)
2433	ENDDO
2434	ENDIF
2435	ENDIF
2436	!
2437	!-- Pre-calculate topography top indices (former get_topography_top_index
2438	!-- function)
2439	ALLOCATE( topo_top_ind(nysg:nyng,nxlg:nxrg,0:5) )
2440	!
2441	!-- Uppermost topography index on scalar grid
2442	ibit = 12
2443	topo_top_ind(:,:,0) = MAXLOC( MERGE( 1, 0, BTEST( wall_flags_total_0(:,:,:), ibit ) ), DIM=1 ) &
2444	- 1
2445	!
2446	!-- Uppermost topography index on u grid
2447	ibit = 14
2448	topo_top_ind(:,:,1) = MAXLOC( MERGE( 1, 0, BTEST( wall_flags_total_0(:,:,:), ibit ) ), DIM=1 ) &
2449	- 1
2450	!
2451	!-- Uppermost topography index on v grid
2452	ibit = 16
2453	topo_top_ind(:,:,2) = MAXLOC( MERGE( 1, 0, BTEST( wall_flags_total_0(:,:,:), ibit ) ), DIM=1 ) &
2454	- 1
2455	!
2456	!-- Uppermost topography index on w grid
2457	ibit = 18
2458	topo_top_ind(:,:,3) = MAXLOC( MERGE( 1, 0, BTEST( wall_flags_total_0(:,:,:), ibit ) ), DIM=1 ) &
2459	- 1
2460	!
2461	!-- Uppermost topography index on scalar outer grid
2462	ibit = 24
2463	topo_top_ind(:,:,4) = MAXLOC( MERGE( 1, 0, BTEST( wall_flags_total_0(:,:,:), ibit ) ), DIM=1 ) &
2464	- 1
2465	!
2466	!-- Uppermost topography index including full-3D geometry
2467	ibit = 12
2468	DO k = nzb, nzt+1
2469	WHERE( BTEST( wall_flags_total_0(k,:,:), ibit ) ) topo_top_ind(:,:,5) = k
2470	ENDDO
2471
2472	END SUBROUTINE set_topo_flags

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source: palm/trunk/SOURCE/init_grid.f90 @ 4878

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