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source: palm/trunk/SOURCE/init_3d_model.f90 @ 593

Last change on this file since 593 was 561, checked in by weinreis, 14 years ago
last commit documented
Property svn:keywords set to `Id`
File size: 56.2 KB

Rev	Line
[1]	1	#if defined( __ibmy_special )
	2	@PROCESS NOOPTimize
	3	#endif
	4	SUBROUTINE init_3d_model
	5
	6	!------------------------------------------------------------------------------!
[254]	7	! Current revisions:
[1]	8	! -----------------
[561]	9	!
[392]	10	!
	11	! Former revisions:
	12	! -----------------
	13	! $Id: init_3d_model.f90 561 2010-09-09 10:08:00Z heinze $
	14	!
[561]	15	! 560 2010-09-09 10:06:09Z weinreis
	16	! bugfix: correction of calculating ngp_3d for 64 bit
	17	!
[486]	18	! 485 2010-02-05 10:57:51Z raasch
	19	! calculation of ngp_3d + ngp_3d_inner changed because they have now 64 bit
	20	!
[482]	21	! 407 2009-12-01 15:01:15Z maronga
	22	! var_ts is replaced by dots_max
	23	! Enabled passive scalar/humidity wall fluxes for non-flat topography
	24	!
[392]	25	! 388 2009-09-23 09:40:33Z raasch
[388]	26	! Initialization of prho added.
[359]	27	! bugfix: correction of initial volume flow for non-flat topography
	28	! bugfix: zero initialization of arrays within buildings for 'cyclic_fill'
[333]	29	! bugfix: avoid that ngp_2dh_s_inner becomes zero
[328]	30	! initializing_actions='read_data_for_recycling' renamed to 'cyclic_fill', now
	31	! independent of turbulent_inflow
[254]	32	! Output of messages replaced by message handling routine.
[240]	33	! Set the starting level and the vertical smoothing factor used for
	34	! the external pressure gradient
[254]	35	! +conserve_volume_flow_mode: 'default', 'initial_profiles', 'inflow_profile'
[241]	36	! and 'bulk_velocity'
[292]	37	! If the inversion height calculated by the prerun is zero,
	38	! inflow_damping_height must be explicitly specified.
[139]	39	!
[198]	40	! 181 2008-07-30 07:07:47Z raasch
	41	! bugfix: zero assignments to tendency arrays in case of restarts,
	42	! further extensions and modifications in the initialisation of the plant
	43	! canopy model,
	44	! allocation of hom_sum moved to parin, initialization of spectrum_x\|y directly
	45	! after allocating theses arrays,
	46	! read data for recycling added as new initialization option,
	47	! dummy allocation for diss
	48	!
[139]	49	! 138 2007-11-28 10:03:58Z letzel
[132]	50	! New counter ngp_2dh_s_inner.
	51	! Allow new case bc_uv_t = 'dirichlet_0' for channel flow.
	52	! Corrected calculation of initial volume flow for 'set_1d-model_profiles' and
	53	! 'set_constant_profiles' in case of buildings in the reference cross-sections.
[77]	54	!
[110]	55	! 108 2007-08-24 15:10:38Z letzel
	56	! Flux initialization in case of coupled runs, +momentum fluxes at top boundary,
	57	! +arrays for phase speed c_u, c_v, c_w, indices for u\|v\|w_m_l\|r changed
	58	! +qswst_remote in case of atmosphere model with humidity coupled to ocean
	59	! Rayleigh damping for ocean, optionally calculate km and kh from initial
	60	! TKE e_init
	61	!
[98]	62	! 97 2007-06-21 08:23:15Z raasch
	63	! Initialization of salinity, call of init_ocean
	64	!
[90]	65	! 87 2007-05-22 15:46:47Z raasch
	66	! var_hom and var_sum renamed pr_palm
	67	!
[77]	68	! 75 2007-03-22 09:54:05Z raasch
[73]	69	! Arrays for radiation boundary conditions are allocated (u_m_l, u_m_r, etc.),
	70	! bugfix for cases with the outflow damping layer extending over more than one
[75]	71	! subdomain, moisture renamed humidity,
	72	! new initializing action "by_user" calls user_init_3d_model,
[72]	73	! precipitation_amount/rate, ts_value are allocated, +module netcdf_control,
[51]	74	! initial velocities at nzb+1 are regarded for volume
	75	! flow control in case they have been set zero before (to avoid small timesteps)
[75]	76	! -uvmean_outflow, uxrp, vynp eliminated
[1]	77	!
[39]	78	! 19 2007-02-23 04:53:48Z raasch
	79	! +handling of top fluxes
	80	!
[3]	81	! RCS Log replace by Id keyword, revision history cleaned up
	82	!
[1]	83	! Revision 1.49 2006/08/22 15:59:07 raasch
	84	! No optimization of this file on the ibmy (Yonsei Univ.)
	85	!
	86	! Revision 1.1 1998/03/09 16:22:22 raasch
	87	! Initial revision
	88	!
	89	!
	90	! Description:
	91	! ------------
	92	! Allocation of arrays and initialization of the 3D model via
	93	! a) pre-run the 1D model
	94	! or
	95	! b) pre-set constant linear profiles
	96	! or
	97	! c) read values of a previous run
	98	!------------------------------------------------------------------------------!
	99
	100	USE arrays_3d
	101	USE averaging
[72]	102	USE cloud_parameters
[1]	103	USE constants
	104	USE control_parameters
	105	USE cpulog
	106	USE indices
	107	USE interfaces
	108	USE model_1d
[51]	109	USE netcdf_control
[1]	110	USE particle_attributes
	111	USE pegrid
	112	USE profil_parameter
	113	USE random_function_mod
	114	USE statistics
	115
	116	IMPLICIT NONE
	117
[559]	118	INTEGER :: i, ind_array(1), j, k, sr
[1]	119
[485]	120	INTEGER, DIMENSION(:), ALLOCATABLE :: ngp_2dh_l
[1]	121
[132]	122	INTEGER, DIMENSION(:,:), ALLOCATABLE :: ngp_2dh_outer_l, &
	123	ngp_2dh_s_inner_l
[1]	124
[153]	125	REAL :: a, b
	126
[1]	127	REAL, DIMENSION(1:2) :: volume_flow_area_l, volume_flow_initial_l
	128
[485]	129	REAL, DIMENSION(:), ALLOCATABLE :: ngp_3d_inner_l, ngp_3d_inner_tmp
[1]	130
[485]	131
[1]	132	!
	133	!-- Allocate arrays
	134	ALLOCATE( ngp_2dh(0:statistic_regions), ngp_2dh_l(0:statistic_regions), &
	135	ngp_3d(0:statistic_regions), &
	136	ngp_3d_inner(0:statistic_regions), &
	137	ngp_3d_inner_l(0:statistic_regions), &
[485]	138	ngp_3d_inner_tmp(0:statistic_regions), &
[1]	139	sums_divnew_l(0:statistic_regions), &
	140	sums_divold_l(0:statistic_regions) )
[240]	141	ALLOCATE( dp_smooth_factor(nzb:nzt), rdf(nzb+1:nzt) )
[143]	142	ALLOCATE( ngp_2dh_outer(nzb:nzt+1,0:statistic_regions), &
[1]	143	ngp_2dh_outer_l(nzb:nzt+1,0:statistic_regions), &
[132]	144	ngp_2dh_s_inner(nzb:nzt+1,0:statistic_regions), &
	145	ngp_2dh_s_inner_l(nzb:nzt+1,0:statistic_regions), &
[1]	146	rmask(nys-1:nyn+1,nxl-1:nxr+1,0:statistic_regions), &
[87]	147	sums(nzb:nzt+1,pr_palm+max_pr_user), &
	148	sums_l(nzb:nzt+1,pr_palm+max_pr_user,0:threads_per_task-1), &
[1]	149	sums_l_l(nzb:nzt+1,0:statistic_regions,0:threads_per_task-1), &
	150	sums_up_fraction_l(10,3,0:statistic_regions), &
[48]	151	sums_wsts_bc_l(nzb:nzt+1,0:statistic_regions), &
[394]	152	ts_value(dots_max,0:statistic_regions) )
[1]	153	ALLOCATE( km_damp_x(nxl-1:nxr+1), km_damp_y(nys-1:nyn+1) )
	154
[19]	155	ALLOCATE( rif_1(nys-1:nyn+1,nxl-1:nxr+1), shf_1(nys-1:nyn+1,nxl-1:nxr+1), &
	156	ts(nys-1:nyn+1,nxl-1:nxr+1), tswst_1(nys-1:nyn+1,nxl-1:nxr+1), &
	157	us(nys-1:nyn+1,nxl-1:nxr+1), usws_1(nys-1:nyn+1,nxl-1:nxr+1), &
[102]	158	uswst_1(nys-1:nyn+1,nxl-1:nxr+1), &
	159	vsws_1(nys-1:nyn+1,nxl-1:nxr+1), &
	160	vswst_1(nys-1:nyn+1,nxl-1:nxr+1), z0(nys-1:nyn+1,nxl-1:nxr+1) )
[1]	161
	162	IF ( timestep_scheme(1:5) /= 'runge' ) THEN
	163	!
	164	!-- Leapfrog scheme needs two timelevels of diffusion quantities
[19]	165	ALLOCATE( rif_2(nys-1:nyn+1,nxl-1:nxr+1), &
	166	shf_2(nys-1:nyn+1,nxl-1:nxr+1), &
	167	tswst_2(nys-1:nyn+1,nxl-1:nxr+1), &
	168	usws_2(nys-1:nyn+1,nxl-1:nxr+1), &
[102]	169	uswst_2(nys-1:nyn+1,nxl-1:nxr+1), &
	170	vswst_2(nys-1:nyn+1,nxl-1:nxr+1), &
[1]	171	vsws_2(nys-1:nyn+1,nxl-1:nxr+1) )
	172	ENDIF
	173
[75]	174	ALLOCATE( d(nzb+1:nzta,nys:nyna,nxl:nxra), &
	175	e_1(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	176	e_2(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	177	e_3(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	178	kh_1(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	179	km_1(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	180	p(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	181	pt_1(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	182	pt_2(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	183	pt_3(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	184	tend(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	185	u_1(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	186	u_2(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	187	u_3(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	188	v_1(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	189	v_2(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	190	v_3(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	191	w_1(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	192	w_2(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
[1]	193	w_3(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1) )
	194
	195	IF ( timestep_scheme(1:5) /= 'runge' ) THEN
	196	ALLOCATE( kh_2(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	197	km_2(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1) )
	198	ENDIF
	199
[75]	200	IF ( humidity .OR. passive_scalar ) THEN
[1]	201	!
[75]	202	!-- 2D-humidity/scalar arrays
[1]	203	ALLOCATE ( qs(nys-1:nyn+1,nxl-1:nxr+1), &
[19]	204	qsws_1(nys-1:nyn+1,nxl-1:nxr+1), &
	205	qswst_1(nys-1:nyn+1,nxl-1:nxr+1) )
[1]	206
	207	IF ( timestep_scheme(1:5) /= 'runge' ) THEN
[19]	208	ALLOCATE( qsws_2(nys-1:nyn+1,nxl-1:nxr+1), &
	209	qswst_2(nys-1:nyn+1,nxl-1:nxr+1) )
[1]	210	ENDIF
	211	!
[75]	212	!-- 3D-humidity/scalar arrays
[1]	213	ALLOCATE( q_1(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	214	q_2(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	215	q_3(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1) )
	216
	217	!
[75]	218	!-- 3D-arrays needed for humidity only
	219	IF ( humidity ) THEN
[1]	220	ALLOCATE( vpt_1(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1) )
	221
	222	IF ( timestep_scheme(1:5) /= 'runge' ) THEN
	223	ALLOCATE( vpt_2(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1) )
	224	ENDIF
	225
	226	IF ( cloud_physics ) THEN
	227	!
	228	!-- Liquid water content
	229	ALLOCATE ( ql_1(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1) )
[72]	230	!
	231	!-- Precipitation amount and rate (only needed if output is switched)
	232	ALLOCATE( precipitation_amount(nys-1:nyn+1,nxl-1:nxr+1), &
	233	precipitation_rate(nys-1:nyn+1,nxl-1:nxr+1) )
[1]	234	ENDIF
	235
	236	IF ( cloud_droplets ) THEN
	237	!
	238	!-- Liquid water content, change in liquid water content,
	239	!-- real volume of particles (with weighting), volume of particles
	240	ALLOCATE ( ql_1(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	241	ql_2(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	242	ql_v(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	243	ql_vp(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1) )
	244	ENDIF
	245
	246	ENDIF
	247
	248	ENDIF
	249
[94]	250	IF ( ocean ) THEN
[95]	251	ALLOCATE( saswsb_1(nys-1:nyn+1,nxl-1:nxr+1), &
	252	saswst_1(nys-1:nyn+1,nxl-1:nxr+1) )
[388]	253	ALLOCATE( prho_1(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	254	rho_1(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	255	sa_1(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	256	sa_2(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
[94]	257	sa_3(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1) )
[388]	258	prho => prho_1
	259	rho => rho_1 ! routines calc_mean_profile and diffusion_e require
	260	! density to be apointer
[108]	261	IF ( humidity_remote ) THEN
	262	ALLOCATE( qswst_remote(nys-1:nyn+1,nxl-1:nxr+1) )
	263	qswst_remote = 0.0
	264	ENDIF
[94]	265	ENDIF
	266
[1]	267	!
	268	!-- 3D-array for storing the dissipation, needed for calculating the sgs
	269	!-- particle velocities
	270	IF ( use_sgs_for_particles ) THEN
	271	ALLOCATE ( diss(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1) )
[181]	272	ELSE
	273	ALLOCATE ( diss(2,2,2) ) ! required because diss is used as a
	274	! formal parameter
[1]	275	ENDIF
	276
	277	IF ( dt_dosp /= 9999999.9 ) THEN
	278	ALLOCATE( spectrum_x( 1:nx/2, 1:10, 1:10 ), &
	279	spectrum_y( 1:ny/2, 1:10, 1:10 ) )
[146]	280	spectrum_x = 0.0
	281	spectrum_y = 0.0
[1]	282	ENDIF
	283
	284	!
[138]	285	!-- 3D-arrays for the leaf area density and the canopy drag coefficient
	286	IF ( plant_canopy ) THEN
	287	ALLOCATE ( lad_s(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	288	lad_u(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	289	lad_v(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	290	lad_w(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	291	cdc(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1) )
[153]	292
	293	IF ( passive_scalar ) THEN
	294	ALLOCATE ( sls(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	295	sec(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1) )
	296	ENDIF
	297
	298	IF ( cthf /= 0.0 ) THEN
	299	ALLOCATE ( lai(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	300	canopy_heat_flux(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1) )
	301	ENDIF
	302
[138]	303	ENDIF
	304
	305	!
[51]	306	!-- 4D-array for storing the Rif-values at vertical walls
	307	IF ( topography /= 'flat' ) THEN
	308	ALLOCATE( rif_wall(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1,1:4) )
	309	rif_wall = 0.0
	310	ENDIF
	311
	312	!
	313	!-- Velocities at nzb+1 needed for volume flow control
	314	IF ( conserve_volume_flow ) THEN
	315	ALLOCATE( u_nzb_p1_for_vfc(nys:nyn), v_nzb_p1_for_vfc(nxl:nxr) )
	316	u_nzb_p1_for_vfc = 0.0
	317	v_nzb_p1_for_vfc = 0.0
	318	ENDIF
	319
	320	!
[106]	321	!-- Arrays to store velocity data from t-dt and the phase speeds which
	322	!-- are needed for radiation boundary conditions
[73]	323	IF ( outflow_l ) THEN
[106]	324	ALLOCATE( u_m_l(nzb:nzt+1,nys-1:nyn+1,1:2), &
	325	v_m_l(nzb:nzt+1,nys-1:nyn+1,0:1), &
	326	w_m_l(nzb:nzt+1,nys-1:nyn+1,0:1) )
[73]	327	ENDIF
	328	IF ( outflow_r ) THEN
[106]	329	ALLOCATE( u_m_r(nzb:nzt+1,nys-1:nyn+1,nx-1:nx), &
	330	v_m_r(nzb:nzt+1,nys-1:nyn+1,nx-1:nx), &
	331	w_m_r(nzb:nzt+1,nys-1:nyn+1,nx-1:nx) )
[73]	332	ENDIF
[106]	333	IF ( outflow_l .OR. outflow_r ) THEN
	334	ALLOCATE( c_u(nzb:nzt+1,nys-1:nyn+1), c_v(nzb:nzt+1,nys-1:nyn+1), &
	335	c_w(nzb:nzt+1,nys-1:nyn+1) )
	336	ENDIF
[73]	337	IF ( outflow_s ) THEN
[106]	338	ALLOCATE( u_m_s(nzb:nzt+1,0:1,nxl-1:nxr+1), &
	339	v_m_s(nzb:nzt+1,1:2,nxl-1:nxr+1), &
	340	w_m_s(nzb:nzt+1,0:1,nxl-1:nxr+1) )
[73]	341	ENDIF
	342	IF ( outflow_n ) THEN
[106]	343	ALLOCATE( u_m_n(nzb:nzt+1,ny-1:ny,nxl-1:nxr+1), &
	344	v_m_n(nzb:nzt+1,ny-1:ny,nxl-1:nxr+1), &
	345	w_m_n(nzb:nzt+1,ny-1:ny,nxl-1:nxr+1) )
[73]	346	ENDIF
[106]	347	IF ( outflow_s .OR. outflow_n ) THEN
	348	ALLOCATE( c_u(nzb:nzt+1,nxl-1:nxr+1), c_v(nzb:nzt+1,nxl-1:nxr+1), &
	349	c_w(nzb:nzt+1,nxl-1:nxr+1) )
	350	ENDIF
[73]	351
	352	!
[1]	353	!-- Initial assignment of the pointers
	354	IF ( timestep_scheme(1:5) /= 'runge' ) THEN
	355
[19]	356	rif_m => rif_1; rif => rif_2
	357	shf_m => shf_1; shf => shf_2
	358	tswst_m => tswst_1; tswst => tswst_2
	359	usws_m => usws_1; usws => usws_2
[102]	360	uswst_m => uswst_1; uswst => uswst_2
[19]	361	vsws_m => vsws_1; vsws => vsws_2
[102]	362	vswst_m => vswst_1; vswst => vswst_2
[1]	363	e_m => e_1; e => e_2; e_p => e_3; te_m => e_3
	364	kh_m => kh_1; kh => kh_2
	365	km_m => km_1; km => km_2
	366	pt_m => pt_1; pt => pt_2; pt_p => pt_3; tpt_m => pt_3
	367	u_m => u_1; u => u_2; u_p => u_3; tu_m => u_3
	368	v_m => v_1; v => v_2; v_p => v_3; tv_m => v_3
	369	w_m => w_1; w => w_2; w_p => w_3; tw_m => w_3
	370
[75]	371	IF ( humidity .OR. passive_scalar ) THEN
[19]	372	qsws_m => qsws_1; qsws => qsws_2
	373	qswst_m => qswst_1; qswst => qswst_2
[1]	374	q_m => q_1; q => q_2; q_p => q_3; tq_m => q_3
[75]	375	IF ( humidity ) vpt_m => vpt_1; vpt => vpt_2
[1]	376	IF ( cloud_physics ) ql => ql_1
	377	IF ( cloud_droplets ) THEN
	378	ql => ql_1
	379	ql_c => ql_2
	380	ENDIF
	381	ENDIF
	382
	383	ELSE
	384
[19]	385	rif => rif_1
	386	shf => shf_1
	387	tswst => tswst_1
	388	usws => usws_1
[102]	389	uswst => uswst_1
[19]	390	vsws => vsws_1
[102]	391	vswst => vswst_1
[19]	392	e => e_1; e_p => e_2; te_m => e_3; e_m => e_3
	393	kh => kh_1
	394	km => km_1
	395	pt => pt_1; pt_p => pt_2; tpt_m => pt_3; pt_m => pt_3
	396	u => u_1; u_p => u_2; tu_m => u_3; u_m => u_3
	397	v => v_1; v_p => v_2; tv_m => v_3; v_m => v_3
	398	w => w_1; w_p => w_2; tw_m => w_3; w_m => w_3
[1]	399
[75]	400	IF ( humidity .OR. passive_scalar ) THEN
[1]	401	qsws => qsws_1
[19]	402	qswst => qswst_1
[94]	403	q => q_1; q_p => q_2; tq_m => q_3; q_m => q_3
[75]	404	IF ( humidity ) vpt => vpt_1
[1]	405	IF ( cloud_physics ) ql => ql_1
	406	IF ( cloud_droplets ) THEN
	407	ql => ql_1
	408	ql_c => ql_2
	409	ENDIF
	410	ENDIF
	411
[94]	412	IF ( ocean ) THEN
[95]	413	saswsb => saswsb_1
[94]	414	saswst => saswst_1
	415	sa => sa_1; sa_p => sa_2; tsa_m => sa_3
	416	ENDIF
	417
[1]	418	ENDIF
	419
	420	!
	421	!-- Initialize model variables
[147]	422	IF ( TRIM( initializing_actions ) /= 'read_restart_data' .AND. &
[328]	423	TRIM( initializing_actions ) /= 'cyclic_fill' ) THEN
[1]	424	!
	425	!-- First model run of a possible job queue.
	426	!-- Initial profiles of the variables must be computes.
	427	IF ( INDEX( initializing_actions, 'set_1d-model_profiles' ) /= 0 ) THEN
	428	!
	429	!-- Use solutions of the 1D model as initial profiles,
	430	!-- start 1D model
	431	CALL init_1d_model
	432	!
	433	!-- Transfer initial profiles to the arrays of the 3D model
	434	DO i = nxl-1, nxr+1
	435	DO j = nys-1, nyn+1
	436	e(:,j,i) = e1d
	437	kh(:,j,i) = kh1d
	438	km(:,j,i) = km1d
	439	pt(:,j,i) = pt_init
	440	u(:,j,i) = u1d
	441	v(:,j,i) = v1d
	442	ENDDO
	443	ENDDO
	444
[75]	445	IF ( humidity .OR. passive_scalar ) THEN
[1]	446	DO i = nxl-1, nxr+1
	447	DO j = nys-1, nyn+1
	448	q(:,j,i) = q_init
	449	ENDDO
	450	ENDDO
	451	ENDIF
	452
	453	IF ( .NOT. constant_diffusion ) THEN
	454	DO i = nxl-1, nxr+1
	455	DO j = nys-1, nyn+1
	456	e(:,j,i) = e1d
	457	ENDDO
	458	ENDDO
	459	!
	460	!-- Store initial profiles for output purposes etc.
	461	hom(:,1,25,:) = SPREAD( l1d, 2, statistic_regions+1 )
	462
	463	IF ( prandtl_layer ) THEN
	464	rif = rif1d(nzb+1)
	465	ts = 0.0 ! could actually be computed more accurately in the
	466	! 1D model. Update when opportunity arises.
	467	us = us1d
	468	usws = usws1d
	469	vsws = vsws1d
	470	ELSE
	471	ts = 0.0 ! must be set, because used in
	472	rif = 0.0 ! flowste
	473	us = 0.0
	474	usws = 0.0
	475	vsws = 0.0
	476	ENDIF
	477
	478	ELSE
	479	e = 0.0 ! must be set, because used in
	480	rif = 0.0 ! flowste
	481	ts = 0.0
	482	us = 0.0
	483	usws = 0.0
	484	vsws = 0.0
	485	ENDIF
[102]	486	uswst = top_momentumflux_u
	487	vswst = top_momentumflux_v
[1]	488
	489	!
	490	!-- In every case qs = 0.0 (see also pt)
	491	!-- This could actually be computed more accurately in the 1D model.
	492	!-- Update when opportunity arises!
[75]	493	IF ( humidity .OR. passive_scalar ) qs = 0.0
[1]	494
	495	!
	496	!-- inside buildings set velocities back to zero
	497	IF ( topography /= 'flat' ) THEN
	498	DO i = nxl-1, nxr+1
	499	DO j = nys-1, nyn+1
	500	u(nzb:nzb_u_inner(j,i),j,i) = 0.0
	501	v(nzb:nzb_v_inner(j,i),j,i) = 0.0
	502	ENDDO
	503	ENDDO
[132]	504	IF ( conserve_volume_flow ) THEN
	505	IF ( nxr == nx ) THEN
	506	DO j = nys, nyn
	507	DO k = nzb + 1, nzb_u_inner(j,nx)
[359]	508	u_nzb_p1_for_vfc(j) = u_nzb_p1_for_vfc(j) + &
	509	u1d(k) * dzu(k)
[132]	510	ENDDO
	511	ENDDO
	512	ENDIF
	513	IF ( nyn == ny ) THEN
	514	DO i = nxl, nxr
	515	DO k = nzb + 1, nzb_v_inner(ny,i)
[359]	516	v_nzb_p1_for_vfc(i) = v_nzb_p1_for_vfc(i) + &
	517	v1d(k) * dzu(k)
[132]	518	ENDDO
	519	ENDDO
	520	ENDIF
	521	ENDIF
[1]	522	!
	523	!-- WARNING: The extra boundary conditions set after running the
	524	!-- ------- 1D model impose an error on the divergence one layer
	525	!-- below the topography; need to correct later
	526	!-- ATTENTION: Provisional correction for Piacsek & Williams
	527	!-- --------- advection scheme: keep u and v zero one layer below
	528	!-- the topography.
	529	IF ( ibc_uv_b == 0 ) THEN
	530	!
	531	!-- Satisfying the Dirichlet condition with an extra layer below
	532	!-- the surface where the u and v component change their sign.
	533	DO i = nxl-1, nxr+1
	534	DO j = nys-1, nyn+1
	535	IF ( nzb_u_inner(j,i) == 0 ) u(0,j,i) = -u(1,j,i)
	536	IF ( nzb_v_inner(j,i) == 0 ) v(0,j,i) = -v(1,j,i)
	537	ENDDO
	538	ENDDO
	539
	540	ELSE
	541	!
	542	!-- Neumann condition
	543	DO i = nxl-1, nxr+1
	544	DO j = nys-1, nyn+1
	545	IF ( nzb_u_inner(j,i) == 0 ) u(0,j,i) = u(1,j,i)
	546	IF ( nzb_v_inner(j,i) == 0 ) v(0,j,i) = v(1,j,i)
	547	ENDDO
	548	ENDDO
	549
	550	ENDIF
	551
	552	ENDIF
	553
	554	ELSEIF ( INDEX(initializing_actions, 'set_constant_profiles') /= 0 ) &
	555	THEN
	556	!
	557	!-- Use constructed initial profiles (velocity constant with height,
	558	!-- temperature profile with constant gradient)
	559	DO i = nxl-1, nxr+1
	560	DO j = nys-1, nyn+1
	561	pt(:,j,i) = pt_init
	562	u(:,j,i) = u_init
	563	v(:,j,i) = v_init
	564	ENDDO
	565	ENDDO
[75]	566
[1]	567	!
[292]	568	!-- Set initial horizontal velocities at the lowest computational grid
	569	!-- levels to zero in order to avoid too small time steps caused by the
	570	!-- diffusion limit in the initial phase of a run (at k=1, dz/2 occurs
	571	!-- in the limiting formula!). The original values are stored to be later
	572	!-- used for volume flow control.
[1]	573	DO i = nxl-1, nxr+1
	574	DO j = nys-1, nyn+1
	575	u(nzb:nzb_u_inner(j,i)+1,j,i) = 0.0
	576	v(nzb:nzb_v_inner(j,i)+1,j,i) = 0.0
	577	ENDDO
	578	ENDDO
[51]	579	IF ( conserve_volume_flow ) THEN
	580	IF ( nxr == nx ) THEN
	581	DO j = nys, nyn
[132]	582	DO k = nzb + 1, nzb_u_inner(j,nx) + 1
[359]	583	u_nzb_p1_for_vfc(j) = u_nzb_p1_for_vfc(j) + &
	584	u_init(k) * dzu(k)
[132]	585	ENDDO
[51]	586	ENDDO
	587	ENDIF
	588	IF ( nyn == ny ) THEN
	589	DO i = nxl, nxr
[132]	590	DO k = nzb + 1, nzb_v_inner(ny,i) + 1
[359]	591	v_nzb_p1_for_vfc(i) = v_nzb_p1_for_vfc(i) + &
	592	v_init(k) * dzu(k)
[132]	593	ENDDO
[51]	594	ENDDO
	595	ENDIF
	596	ENDIF
[1]	597
[75]	598	IF ( humidity .OR. passive_scalar ) THEN
[1]	599	DO i = nxl-1, nxr+1
	600	DO j = nys-1, nyn+1
	601	q(:,j,i) = q_init
	602	ENDDO
	603	ENDDO
	604	ENDIF
	605
[94]	606	IF ( ocean ) THEN
	607	DO i = nxl-1, nxr+1
	608	DO j = nys-1, nyn+1
	609	sa(:,j,i) = sa_init
	610	ENDDO
	611	ENDDO
	612	ENDIF
[1]	613
	614	IF ( constant_diffusion ) THEN
	615	km = km_constant
	616	kh = km / prandtl_number
[108]	617	e = 0.0
	618	ELSEIF ( e_init > 0.0 ) THEN
	619	DO k = nzb+1, nzt
	620	km(k,:,:) = 0.1 * l_grid(k) * SQRT( e_init )
	621	ENDDO
	622	km(nzb,:,:) = km(nzb+1,:,:)
	623	km(nzt+1,:,:) = km(nzt,:,:)
	624	kh = km / prandtl_number
	625	e = e_init
[1]	626	ELSE
[108]	627	IF ( .NOT. ocean ) THEN
	628	kh = 0.01 ! there must exist an initial diffusion, because
	629	km = 0.01 ! otherwise no TKE would be produced by the
	630	! production terms, as long as not yet
	631	! e = (u/cm)*2 at k=nzb+1
	632	ELSE
	633	kh = 0.00001
	634	km = 0.00001
	635	ENDIF
	636	e = 0.0
[1]	637	ENDIF
[102]	638	rif = 0.0
	639	ts = 0.0
	640	us = 0.0
	641	usws = 0.0
	642	uswst = top_momentumflux_u
	643	vsws = 0.0
	644	vswst = top_momentumflux_v
[75]	645	IF ( humidity .OR. passive_scalar ) qs = 0.0
[1]	646
	647	!
	648	!-- Compute initial temperature field and other constants used in case
	649	!-- of a sloping surface
	650	IF ( sloping_surface ) CALL init_slope
	651
[46]	652	ELSEIF ( INDEX(initializing_actions, 'by_user') /= 0 ) &
	653	THEN
	654	!
	655	!-- Initialization will completely be done by the user
	656	CALL user_init_3d_model
	657
[1]	658	ENDIF
	659
	660	!
[151]	661	!-- Apply channel flow boundary condition
[132]	662	IF ( TRIM( bc_uv_t ) == 'dirichlet_0' ) THEN
	663
	664	u(nzt+1,:,:) = 0.0
	665	v(nzt+1,:,:) = 0.0
	666
[151]	667	!-- For the Dirichlet condition to be correctly applied at the top, set
[132]	668	!-- ug and vg to zero there
	669	ug(nzt+1) = 0.0
	670	vg(nzt+1) = 0.0
	671
	672	ENDIF
	673
	674	!
[1]	675	!-- Calculate virtual potential temperature
[75]	676	IF ( humidity ) vpt = pt * ( 1.0 + 0.61 * q )
[1]	677
	678	!
	679	!-- Store initial profiles for output purposes etc.
	680	hom(:,1,5,:) = SPREAD( u(:,nys,nxl), 2, statistic_regions+1 )
	681	hom(:,1,6,:) = SPREAD( v(:,nys,nxl), 2, statistic_regions+1 )
	682	IF ( ibc_uv_b == 0 ) THEN
	683	hom(nzb,1,5,:) = -hom(nzb+1,1,5,:) ! due to satisfying the Dirichlet
	684	hom(nzb,1,6,:) = -hom(nzb+1,1,6,:) ! condition with an extra layer
	685	! below the surface where the u and v component change their sign
	686	ENDIF
	687	hom(:,1,7,:) = SPREAD( pt(:,nys,nxl), 2, statistic_regions+1 )
	688	hom(:,1,23,:) = SPREAD( km(:,nys,nxl), 2, statistic_regions+1 )
	689	hom(:,1,24,:) = SPREAD( kh(:,nys,nxl), 2, statistic_regions+1 )
	690
[97]	691	IF ( ocean ) THEN
	692	!
	693	!-- Store initial salinity profile
	694	hom(:,1,26,:) = SPREAD( sa(:,nys,nxl), 2, statistic_regions+1 )
	695	ENDIF
[1]	696
[75]	697	IF ( humidity ) THEN
[1]	698	!
	699	!-- Store initial profile of total water content, virtual potential
	700	!-- temperature
	701	hom(:,1,26,:) = SPREAD( q(:,nys,nxl), 2, statistic_regions+1 )
	702	hom(:,1,29,:) = SPREAD( vpt(:,nys,nxl), 2, statistic_regions+1 )
	703	IF ( cloud_physics .OR. cloud_droplets ) THEN
	704	!
	705	!-- Store initial profile of specific humidity and potential
	706	!-- temperature
	707	hom(:,1,27,:) = SPREAD( q(:,nys,nxl), 2, statistic_regions+1 )
	708	hom(:,1,28,:) = SPREAD( pt(:,nys,nxl), 2, statistic_regions+1 )
	709	ENDIF
	710	ENDIF
	711
	712	IF ( passive_scalar ) THEN
	713	!
	714	!-- Store initial scalar profile
	715	hom(:,1,26,:) = SPREAD( q(:,nys,nxl), 2, statistic_regions+1 )
	716	ENDIF
	717
	718	!
[19]	719	!-- Initialize fluxes at bottom surface
[1]	720	IF ( use_surface_fluxes ) THEN
	721
	722	IF ( constant_heatflux ) THEN
	723	!
	724	!-- Heat flux is prescribed
	725	IF ( random_heatflux ) THEN
	726	CALL disturb_heatflux
	727	ELSE
	728	shf = surface_heatflux
	729	!
	730	!-- Over topography surface_heatflux is replaced by wall_heatflux(0)
	731	IF ( TRIM( topography ) /= 'flat' ) THEN
	732	DO i = nxl-1, nxr+1
	733	DO j = nys-1, nyn+1
	734	IF ( nzb_s_inner(j,i) /= 0 ) THEN
	735	shf(j,i) = wall_heatflux(0)
	736	ENDIF
	737	ENDDO
	738	ENDDO
	739	ENDIF
	740	ENDIF
	741	IF ( ASSOCIATED( shf_m ) ) shf_m = shf
	742	ENDIF
	743
	744	!
	745	!-- Determine the near-surface water flux
[75]	746	IF ( humidity .OR. passive_scalar ) THEN
[1]	747	IF ( constant_waterflux ) THEN
	748	qsws = surface_waterflux
[407]	749	!
	750	!-- Over topography surface_waterflux is replaced by
	751	!-- wall_humidityflux(0)
	752	IF ( TRIM( topography ) /= 'flat' ) THEN
	753	wall_qflux = wall_humidityflux
	754	DO i = nxl-1, nxr+1
	755	DO j = nys-1, nyn+1
	756	IF ( nzb_s_inner(j,i) /= 0 ) THEN
	757	qsws(j,i) = wall_qflux(0)
	758	ENDIF
	759	ENDDO
	760	ENDDO
	761	ENDIF
[1]	762	IF ( ASSOCIATED( qsws_m ) ) qsws_m = qsws
	763	ENDIF
	764	ENDIF
	765
	766	ENDIF
	767
	768	!
[19]	769	!-- Initialize fluxes at top surface
[94]	770	!-- Currently, only the heatflux and salinity flux can be prescribed.
	771	!-- The latent flux is zero in this case!
[19]	772	IF ( use_top_fluxes ) THEN
	773
	774	IF ( constant_top_heatflux ) THEN
	775	!
	776	!-- Heat flux is prescribed
	777	tswst = top_heatflux
	778	IF ( ASSOCIATED( tswst_m ) ) tswst_m = tswst
	779
[75]	780	IF ( humidity .OR. passive_scalar ) THEN
[19]	781	qswst = 0.0
	782	IF ( ASSOCIATED( qswst_m ) ) qswst_m = qswst
	783	ENDIF
[94]	784
	785	IF ( ocean ) THEN
[95]	786	saswsb = bottom_salinityflux
[94]	787	saswst = top_salinityflux
	788	ENDIF
[102]	789	ENDIF
[19]	790
[102]	791	!
	792	!-- Initialization in case of a coupled model run
	793	IF ( coupling_mode == 'ocean_to_atmosphere' ) THEN
	794	tswst = 0.0
	795	IF ( ASSOCIATED( tswst_m ) ) tswst_m = tswst
	796	ENDIF
	797
[19]	798	ENDIF
	799
	800	!
[1]	801	!-- Initialize Prandtl layer quantities
	802	IF ( prandtl_layer ) THEN
	803
	804	z0 = roughness_length
	805
	806	IF ( .NOT. constant_heatflux ) THEN
	807	!
	808	!-- Surface temperature is prescribed. Here the heat flux cannot be
	809	!-- simply estimated, because therefore rif, u* and theta* would have
	810	!-- to be computed by iteration. This is why the heat flux is assumed
	811	!-- to be zero before the first time step. It approaches its correct
	812	!-- value in the course of the first few time steps.
	813	shf = 0.0
	814	IF ( ASSOCIATED( shf_m ) ) shf_m = 0.0
	815	ENDIF
	816
[75]	817	IF ( humidity .OR. passive_scalar ) THEN
[1]	818	IF ( .NOT. constant_waterflux ) THEN
	819	qsws = 0.0
	820	IF ( ASSOCIATED( qsws_m ) ) qsws_m = 0.0
	821	ENDIF
	822	ENDIF
	823
	824	ENDIF
	825
	826	!
[152]	827	!-- Calculate the initial volume flow at the right and north boundary
	828	IF ( conserve_volume_flow ) THEN
	829
	830	volume_flow_initial_l = 0.0
	831	volume_flow_area_l = 0.0
	832
	833	IF ( nxr == nx ) THEN
	834	DO j = nys, nyn
	835	DO k = nzb_2d(j,nx) + 1, nzt
	836	volume_flow_initial_l(1) = volume_flow_initial_l(1) + &
	837	u(k,j,nx) * dzu(k)
	838	volume_flow_area_l(1) = volume_flow_area_l(1) + dzu(k)
	839	ENDDO
	840	!
	841	!-- Correction if velocity at nzb+1 has been set zero further above
	842	volume_flow_initial_l(1) = volume_flow_initial_l(1) + &
	843	u_nzb_p1_for_vfc(j)
	844	ENDDO
	845	ENDIF
	846
	847	IF ( nyn == ny ) THEN
	848	DO i = nxl, nxr
	849	DO k = nzb_2d(ny,i) + 1, nzt
	850	volume_flow_initial_l(2) = volume_flow_initial_l(2) + &
	851	v(k,ny,i) * dzu(k)
	852	volume_flow_area_l(2) = volume_flow_area_l(2) + dzu(k)
	853	ENDDO
	854	!
	855	!-- Correction if velocity at nzb+1 has been set zero further above
	856	volume_flow_initial_l(2) = volume_flow_initial_l(2) + &
	857	v_nzb_p1_for_vfc(i)
	858	ENDDO
	859	ENDIF
	860
	861	#if defined( __parallel )
	862	CALL MPI_ALLREDUCE( volume_flow_initial_l(1), volume_flow_initial(1),&
	863	2, MPI_REAL, MPI_SUM, comm2d, ierr )
	864	CALL MPI_ALLREDUCE( volume_flow_area_l(1), volume_flow_area(1), &
	865	2, MPI_REAL, MPI_SUM, comm2d, ierr )
	866	#else
	867	volume_flow_initial = volume_flow_initial_l
	868	volume_flow_area = volume_flow_area_l
[241]	869	#endif
	870	!
	871	!-- In case of 'bulk_velocity' mode, volume_flow_initial is overridden
	872	!-- and calculated from u\|v_bulk instead.
	873	IF ( TRIM( conserve_volume_flow_mode ) == 'bulk_velocity' ) THEN
	874	volume_flow_initial(1) = u_bulk * volume_flow_area(1)
	875	volume_flow_initial(2) = v_bulk * volume_flow_area(2)
	876	ENDIF
	877
[152]	878	ENDIF
	879
	880	!
[1]	881	!-- For the moment, perturbation pressure and vertical velocity are zero
	882	p = 0.0; w = 0.0
	883
	884	!
	885	!-- Initialize array sums (must be defined in first call of pres)
	886	sums = 0.0
	887
	888	!
[72]	889	!-- Treating cloud physics, liquid water content and precipitation amount
	890	!-- are zero at beginning of the simulation
	891	IF ( cloud_physics ) THEN
	892	ql = 0.0
	893	IF ( precipitation ) precipitation_amount = 0.0
	894	ENDIF
[1]	895
	896	!
	897	!-- Impose vortex with vertical axis on the initial velocity profile
	898	IF ( INDEX( initializing_actions, 'initialize_vortex' ) /= 0 ) THEN
	899	CALL init_rankine
	900	ENDIF
	901
	902	!
	903	!-- Impose temperature anomaly (advection test only)
	904	IF ( INDEX( initializing_actions, 'initialize_ptanom' ) /= 0 ) THEN
	905	CALL init_pt_anomaly
	906	ENDIF
	907
	908	!
	909	!-- If required, change the surface temperature at the start of the 3D run
	910	IF ( pt_surface_initial_change /= 0.0 ) THEN
	911	pt(nzb,:,:) = pt(nzb,:,:) + pt_surface_initial_change
	912	ENDIF
	913
	914	!
	915	!-- If required, change the surface humidity/scalar at the start of the 3D
	916	!-- run
[75]	917	IF ( ( humidity .OR. passive_scalar ) .AND. &
[1]	918	q_surface_initial_change /= 0.0 ) THEN
	919	q(nzb,:,:) = q(nzb,:,:) + q_surface_initial_change
	920	ENDIF
	921
	922	!
	923	!-- Initialize the random number generator (from numerical recipes)
	924	CALL random_function_ini
	925
	926	!
	927	!-- Impose random perturbation on the horizontal velocity field and then
	928	!-- remove the divergences from the velocity field
	929	IF ( create_disturbances ) THEN
[75]	930	CALL disturb_field( nzb_u_inner, tend, u )
	931	CALL disturb_field( nzb_v_inner, tend, v )
[1]	932	n_sor = nsor_ini
	933	CALL pres
	934	n_sor = nsor
	935	ENDIF
	936
	937	!
	938	!-- Once again set the perturbation pressure explicitly to zero in order to
	939	!-- assure that it does not generate any divergences in the first time step.
	940	!-- At t=0 the velocity field is free of divergence (as constructed above).
	941	!-- Divergences being created during a time step are not yet known and thus
	942	!-- cannot be corrected during the time step yet.
	943	p = 0.0
	944
	945	!
	946	!-- Initialize old and new time levels.
	947	IF ( timestep_scheme(1:5) /= 'runge' ) THEN
	948	e_m = e; pt_m = pt; u_m = u; v_m = v; w_m = w; kh_m = kh; km_m = km
	949	ELSE
	950	te_m = 0.0; tpt_m = 0.0; tu_m = 0.0; tv_m = 0.0; tw_m = 0.0
	951	ENDIF
	952	e_p = e; pt_p = pt; u_p = u; v_p = v; w_p = w
	953
[75]	954	IF ( humidity .OR. passive_scalar ) THEN
[1]	955	IF ( ASSOCIATED( q_m ) ) q_m = q
	956	IF ( timestep_scheme(1:5) == 'runge' ) tq_m = 0.0
	957	q_p = q
[75]	958	IF ( humidity .AND. ASSOCIATED( vpt_m ) ) vpt_m = vpt
[1]	959	ENDIF
	960
[94]	961	IF ( ocean ) THEN
	962	tsa_m = 0.0
	963	sa_p = sa
	964	ENDIF
	965
[73]	966
[147]	967	ELSEIF ( TRIM( initializing_actions ) == 'read_restart_data' .OR. &
[328]	968	TRIM( initializing_actions ) == 'cyclic_fill' ) &
[1]	969	THEN
	970	!
[328]	971	!-- When reading data for cyclic fill of 3D prerun data, first read
[147]	972	!-- some of the global variables from restart file
[328]	973	IF ( TRIM( initializing_actions ) == 'cyclic_fill' ) THEN
[559]	974
[147]	975	WRITE (9,*) 'before read_parts_of_var_list'
	976	CALL local_flush( 9 )
[559]	977	CALL read_parts_of_var_list
[147]	978	WRITE (9,*) 'after read_parts_of_var_list'
	979	CALL local_flush( 9 )
	980	CALL close_file( 13 )
[328]	981
[151]	982	!
[328]	983	!-- Initialization of the turbulence recycling method
	984	IF ( turbulent_inflow ) THEN
	985	!
	986	!-- Store temporally and horizontally averaged vertical profiles to be
	987	!-- used as mean inflow profiles
	988	ALLOCATE( mean_inflow_profiles(nzb:nzt+1,5) )
[151]	989
[328]	990	mean_inflow_profiles(:,1) = hom_sum(:,1,0) ! u
	991	mean_inflow_profiles(:,2) = hom_sum(:,2,0) ! v
	992	mean_inflow_profiles(:,4) = hom_sum(:,4,0) ! pt
	993	mean_inflow_profiles(:,5) = hom_sum(:,8,0) ! e
[151]	994
	995	!
[328]	996	!-- Use these mean profiles for the inflow (provided that Dirichlet
	997	!-- conditions are used)
	998	IF ( inflow_l ) THEN
	999	DO j = nys-1, nyn+1
	1000	DO k = nzb, nzt+1
	1001	u(k,j,-1) = mean_inflow_profiles(k,1)
	1002	v(k,j,-1) = mean_inflow_profiles(k,2)
	1003	w(k,j,-1) = 0.0
	1004	pt(k,j,-1) = mean_inflow_profiles(k,4)
	1005	e(k,j,-1) = mean_inflow_profiles(k,5)
	1006	ENDDO
[151]	1007	ENDDO
[328]	1008	ENDIF
[151]	1009
	1010	!
[328]	1011	!-- Calculate the damping factors to be used at the inflow. For a
	1012	!-- turbulent inflow the turbulent fluctuations have to be limited
	1013	!-- vertically because otherwise the turbulent inflow layer will grow
	1014	!-- in time.
	1015	IF ( inflow_damping_height == 9999999.9 ) THEN
[151]	1016	!
[328]	1017	!-- Default: use the inversion height calculated by the prerun; if
	1018	!-- this is zero, inflow_damping_height must be explicitly
	1019	!-- specified.
	1020	IF ( hom_sum(nzb+6,pr_palm,0) /= 0.0 ) THEN
	1021	inflow_damping_height = hom_sum(nzb+6,pr_palm,0)
	1022	ELSE
	1023	WRITE( message_string, * ) 'inflow_damping_height must be ',&
	1024	'explicitly specified because&the inversion height ', &
	1025	'calculated by the prerun is zero.'
	1026	CALL message( 'init_3d_model', 'PA0318', 1, 2, 0, 6, 0 )
	1027	ENDIF
	1028
[292]	1029	ENDIF
[151]	1030
[328]	1031	IF ( inflow_damping_width == 9999999.9 ) THEN
[151]	1032	!
[328]	1033	!-- Default for the transition range: one tenth of the undamped
	1034	!-- layer
	1035	inflow_damping_width = 0.1 * inflow_damping_height
[151]	1036
[328]	1037	ENDIF
[151]	1038
[328]	1039	ALLOCATE( inflow_damping_factor(nzb:nzt+1) )
[151]	1040
[328]	1041	DO k = nzb, nzt+1
[151]	1042
[328]	1043	IF ( zu(k) <= inflow_damping_height ) THEN
	1044	inflow_damping_factor(k) = 1.0
	1045	ELSEIF ( zu(k) <= inflow_damping_height + &
	1046	inflow_damping_width ) THEN
	1047	inflow_damping_factor(k) = 1.0 - &
[151]	1048	( zu(k) - inflow_damping_height ) / &
	1049	inflow_damping_width
[328]	1050	ELSE
	1051	inflow_damping_factor(k) = 0.0
	1052	ENDIF
[151]	1053
[328]	1054	ENDDO
	1055	ENDIF
[151]	1056
[147]	1057	ENDIF
	1058
[152]	1059	!
[163]	1060	!-- Read binary data from restart file
[559]	1061	WRITE (9,*) 'before read_3d_binary'
	1062	CALL local_flush( 9 )
	1063	CALL read_3d_binary
	1064	WRITE (9,*) 'after read_3d_binary'
	1065	CALL local_flush( 9 )
[163]	1066
	1067	!
[359]	1068	!-- Inside buildings set velocities and TKE back to zero
	1069	IF ( TRIM( initializing_actions ) == 'cyclic_fill' .AND. &
	1070	topography /= 'flat' ) THEN
	1071	!
	1072	!-- Correction of initial volume flow
	1073	IF ( conserve_volume_flow ) THEN
	1074	IF ( nxr == nx ) THEN
	1075	DO j = nys, nyn
	1076	DO k = nzb + 1, nzb_u_inner(j,nx)
	1077	u_nzb_p1_for_vfc(j) = u_nzb_p1_for_vfc(j) + &
	1078	u(k,j,nx) * dzu(k)
	1079	ENDDO
	1080	ENDDO
	1081	ENDIF
	1082	IF ( nyn == ny ) THEN
	1083	DO i = nxl, nxr
	1084	DO k = nzb + 1, nzb_v_inner(ny,i)
	1085	v_nzb_p1_for_vfc(i) = v_nzb_p1_for_vfc(i) + &
	1086	v(k,ny,i) * dzu(k)
	1087	ENDDO
	1088	ENDDO
	1089	ENDIF
	1090	ENDIF
	1091
	1092	!
	1093	!-- Inside buildings set velocities and TKE back to zero.
	1094	!-- Other scalars (pt, q, s, km, kh, p, sa, ...) are ignored at present,
	1095	!-- maybe revise later.
	1096	IF ( timestep_scheme(1:5) == 'runge' ) THEN
	1097	DO i = nxl-1, nxr+1
	1098	DO j = nys-1, nyn+1
	1099	u (nzb:nzb_u_inner(j,i),j,i) = 0.0
	1100	v (nzb:nzb_v_inner(j,i),j,i) = 0.0
	1101	w (nzb:nzb_w_inner(j,i),j,i) = 0.0
	1102	e (nzb:nzb_w_inner(j,i),j,i) = 0.0
	1103	u_m(nzb:nzb_u_inner(j,i),j,i) = 0.0
	1104	v_m(nzb:nzb_v_inner(j,i),j,i) = 0.0
	1105	w_m(nzb:nzb_w_inner(j,i),j,i) = 0.0
	1106	e_m(nzb:nzb_w_inner(j,i),j,i) = 0.0
	1107	tu_m(nzb:nzb_u_inner(j,i),j,i) = 0.0
	1108	tv_m(nzb:nzb_v_inner(j,i),j,i) = 0.0
	1109	tw_m(nzb:nzb_w_inner(j,i),j,i) = 0.0
	1110	te_m(nzb:nzb_w_inner(j,i),j,i) = 0.0
	1111	tpt_m(nzb:nzb_w_inner(j,i),j,i) = 0.0
	1112	ENDDO
	1113	ENDDO
	1114	ELSE
	1115	DO i = nxl-1, nxr+1
	1116	DO j = nys-1, nyn+1
	1117	u (nzb:nzb_u_inner(j,i),j,i) = 0.0
	1118	v (nzb:nzb_v_inner(j,i),j,i) = 0.0
	1119	w (nzb:nzb_w_inner(j,i),j,i) = 0.0
	1120	e (nzb:nzb_w_inner(j,i),j,i) = 0.0
	1121	u_m(nzb:nzb_u_inner(j,i),j,i) = 0.0
	1122	v_m(nzb:nzb_v_inner(j,i),j,i) = 0.0
	1123	w_m(nzb:nzb_w_inner(j,i),j,i) = 0.0
	1124	e_m(nzb:nzb_w_inner(j,i),j,i) = 0.0
	1125	u_p(nzb:nzb_u_inner(j,i),j,i) = 0.0
	1126	v_p(nzb:nzb_v_inner(j,i),j,i) = 0.0
	1127	w_p(nzb:nzb_w_inner(j,i),j,i) = 0.0
	1128	e_p(nzb:nzb_w_inner(j,i),j,i) = 0.0
	1129	ENDDO
	1130	ENDDO
	1131	ENDIF
	1132
	1133	ENDIF
	1134
	1135	!
[152]	1136	!-- Calculate the initial volume flow at the right and north boundary
[163]	1137	IF ( conserve_volume_flow .AND. &
[328]	1138	TRIM( initializing_actions ) == 'cyclic_fill' ) THEN
[151]	1139
[152]	1140	volume_flow_initial_l = 0.0
	1141	volume_flow_area_l = 0.0
	1142
	1143	IF ( nxr == nx ) THEN
	1144	DO j = nys, nyn
	1145	DO k = nzb_2d(j,nx) + 1, nzt
	1146	volume_flow_initial_l(1) = volume_flow_initial_l(1) + &
	1147	u(k,j,nx) * dzu(k)
	1148	volume_flow_area_l(1) = volume_flow_area_l(1) + dzu(k)
	1149	ENDDO
[147]	1150	!
[359]	1151	!-- Correction if velocity inside buildings has been set to zero
	1152	!-- further above
[152]	1153	volume_flow_initial_l(1) = volume_flow_initial_l(1) + &
	1154	u_nzb_p1_for_vfc(j)
	1155	ENDDO
	1156	ENDIF
	1157
	1158	IF ( nyn == ny ) THEN
	1159	DO i = nxl, nxr
	1160	DO k = nzb_2d(ny,i) + 1, nzt
	1161	volume_flow_initial_l(2) = volume_flow_initial_l(2) + &
	1162	v(k,ny,i) * dzu(k)
	1163	volume_flow_area_l(2) = volume_flow_area_l(2) + dzu(k)
	1164	ENDDO
	1165	!
[359]	1166	!-- Correction if velocity inside buildings has been set to zero
	1167	!-- further above
[152]	1168	volume_flow_initial_l(2) = volume_flow_initial_l(2) + &
	1169	v_nzb_p1_for_vfc(i)
	1170	ENDDO
	1171	ENDIF
	1172
	1173	#if defined( __parallel )
	1174	CALL MPI_ALLREDUCE( volume_flow_initial_l(1), volume_flow_initial(1),&
	1175	2, MPI_REAL, MPI_SUM, comm2d, ierr )
	1176	CALL MPI_ALLREDUCE( volume_flow_area_l(1), volume_flow_area(1), &
	1177	2, MPI_REAL, MPI_SUM, comm2d, ierr )
	1178	#else
	1179	volume_flow_initial = volume_flow_initial_l
	1180	volume_flow_area = volume_flow_area_l
	1181	#endif
	1182	ENDIF
	1183
	1184
	1185	!
[1]	1186	!-- Calculate initial temperature field and other constants used in case
	1187	!-- of a sloping surface
	1188	IF ( sloping_surface ) CALL init_slope
	1189
	1190	!
	1191	!-- Initialize new time levels (only done in order to set boundary values
	1192	!-- including ghost points)
	1193	e_p = e; pt_p = pt; u_p = u; v_p = v; w_p = w
[75]	1194	IF ( humidity .OR. passive_scalar ) q_p = q
[94]	1195	IF ( ocean ) sa_p = sa
[1]	1196
[181]	1197	!
	1198	!-- Allthough tendency arrays are set in prognostic_equations, they have
	1199	!-- have to be predefined here because they are used (but multiplied with 0)
	1200	!-- there before they are set.
	1201	IF ( timestep_scheme(1:5) == 'runge' ) THEN
	1202	te_m = 0.0; tpt_m = 0.0; tu_m = 0.0; tv_m = 0.0; tw_m = 0.0
	1203	IF ( humidity .OR. passive_scalar ) tq_m = 0.0
	1204	IF ( ocean ) tsa_m = 0.0
	1205	ENDIF
	1206
[1]	1207	ELSE
	1208	!
	1209	!-- Actually this part of the programm should not be reached
[254]	1210	message_string = 'unknown initializing problem'
	1211	CALL message( 'init_3d_model', 'PA0193', 1, 2, 0, 6, 0 )
[1]	1212	ENDIF
	1213
[151]	1214
	1215	IF ( TRIM( initializing_actions ) /= 'read_restart_data' ) THEN
[1]	1216	!
[151]	1217	!-- Initialize old timelevels needed for radiation boundary conditions
	1218	IF ( outflow_l ) THEN
	1219	u_m_l(:,:,:) = u(:,:,1:2)
	1220	v_m_l(:,:,:) = v(:,:,0:1)
	1221	w_m_l(:,:,:) = w(:,:,0:1)
	1222	ENDIF
	1223	IF ( outflow_r ) THEN
	1224	u_m_r(:,:,:) = u(:,:,nx-1:nx)
	1225	v_m_r(:,:,:) = v(:,:,nx-1:nx)
	1226	w_m_r(:,:,:) = w(:,:,nx-1:nx)
	1227	ENDIF
	1228	IF ( outflow_s ) THEN
	1229	u_m_s(:,:,:) = u(:,0:1,:)
	1230	v_m_s(:,:,:) = v(:,1:2,:)
	1231	w_m_s(:,:,:) = w(:,0:1,:)
	1232	ENDIF
	1233	IF ( outflow_n ) THEN
	1234	u_m_n(:,:,:) = u(:,ny-1:ny,:)
	1235	v_m_n(:,:,:) = v(:,ny-1:ny,:)
	1236	w_m_n(:,:,:) = w(:,ny-1:ny,:)
	1237	ENDIF
	1238
	1239	ENDIF
	1240
	1241	!
[138]	1242	!-- Initialization of the leaf area density
	1243	IF ( plant_canopy ) THEN
	1244
	1245	SELECT CASE ( TRIM( canopy_mode ) )
	1246
	1247	CASE( 'block' )
	1248
	1249	DO i = nxl-1, nxr+1
	1250	DO j = nys-1, nyn+1
	1251	lad_s(:,j,i) = lad(:)
	1252	cdc(:,j,i) = drag_coefficient
[153]	1253	IF ( passive_scalar ) THEN
	1254	sls(:,j,i) = leaf_surface_concentration
	1255	sec(:,j,i) = scalar_exchange_coefficient
	1256	ENDIF
[138]	1257	ENDDO
	1258	ENDDO
	1259
	1260	CASE DEFAULT
	1261
	1262	!
	1263	!-- The DEFAULT case is reached either if the parameter
	1264	!-- canopy mode contains a wrong character string or if the
	1265	!-- user has coded a special case in the user interface.
	1266	!-- There, the subroutine user_init_plant_canopy checks
	1267	!-- which of these two conditions applies.
	1268	CALL user_init_plant_canopy
	1269
	1270	END SELECT
	1271
	1272	CALL exchange_horiz( lad_s )
	1273	CALL exchange_horiz( cdc )
	1274
[153]	1275	IF ( passive_scalar ) THEN
	1276	CALL exchange_horiz( sls )
	1277	CALL exchange_horiz( sec )
	1278	ENDIF
	1279
	1280	!
	1281	!-- Sharp boundaries of the plant canopy in horizontal directions
	1282	!-- In vertical direction the interpolation is retained, as the leaf
	1283	!-- area density is initialised by prescribing a vertical profile
	1284	!-- consisting of piecewise linear segments. The upper boundary
	1285	!-- of the plant canopy is now defined by lad_w(pch_index,:,:) = 0.0.
	1286
[138]	1287	DO i = nxl, nxr
	1288	DO j = nys, nyn
	1289	DO k = nzb, nzt+1
[153]	1290	IF ( lad_s(k,j,i) > 0.0 ) THEN
	1291	lad_u(k,j,i) = lad_s(k,j,i)
	1292	lad_u(k,j,i+1) = lad_s(k,j,i)
	1293	lad_v(k,j,i) = lad_s(k,j,i)
	1294	lad_v(k,j+1,i) = lad_s(k,j,i)
	1295	ENDIF
[138]	1296	ENDDO
	1297	DO k = nzb, nzt
	1298	lad_w(k,j,i) = 0.5 * ( lad_s(k+1,j,i) + lad_s(k,j,i) )
	1299	ENDDO
	1300	ENDDO
	1301	ENDDO
	1302
[153]	1303	lad_w(pch_index,:,:) = 0.0
	1304	lad_w(nzt+1,:,:) = lad_w(nzt,:,:)
[138]	1305
	1306	CALL exchange_horiz( lad_u )
	1307	CALL exchange_horiz( lad_v )
	1308	CALL exchange_horiz( lad_w )
[153]	1309
	1310	!
	1311	!-- Initialisation of the canopy heat source distribution
	1312	IF ( cthf /= 0.0 ) THEN
	1313	!
	1314	!-- Piecewise evaluation of the leaf area index by
	1315	!-- integration of the leaf area density
	1316	lai(:,:,:) = 0.0
	1317	DO i = nxl-1, nxr+1
	1318	DO j = nys-1, nyn+1
	1319	DO k = pch_index-1, 0, -1
	1320	lai(k,j,i) = lai(k+1,j,i) + &
	1321	( 0.5 * ( lad_w(k+1,j,i) + &
	1322	lad_s(k+1,j,i) ) * &
	1323	( zw(k+1) - zu(k+1) ) ) + &
	1324	( 0.5 * ( lad_w(k,j,i) + &
	1325	lad_s(k+1,j,i) ) * &
	1326	( zu(k+1) - zw(k) ) )
	1327	ENDDO
	1328	ENDDO
	1329	ENDDO
	1330
	1331	!
	1332	!-- Evaluation of the upward kinematic vertical heat flux within the
	1333	!-- canopy
	1334	DO i = nxl-1, nxr+1
	1335	DO j = nys-1, nyn+1
	1336	DO k = 0, pch_index
	1337	canopy_heat_flux(k,j,i) = cthf * &
	1338	exp( -0.6 * lai(k,j,i) )
	1339	ENDDO
	1340	ENDDO
	1341	ENDDO
	1342
	1343	!
	1344	!-- The near surface heat flux is derived from the heat flux
	1345	!-- distribution within the canopy
	1346	shf(:,:) = canopy_heat_flux(0,:,:)
	1347
	1348	IF ( ASSOCIATED( shf_m ) ) shf_m = shf
	1349
	1350	ENDIF
	1351
[138]	1352	ENDIF
	1353
	1354	!
[1]	1355	!-- If required, initialize dvrp-software
	1356	IF ( dt_dvrp /= 9999999.9 ) CALL init_dvrp
	1357
[96]	1358	IF ( ocean ) THEN
[1]	1359	!
[96]	1360	!-- Initialize quantities needed for the ocean model
	1361	CALL init_ocean
[388]	1362
[96]	1363	ELSE
	1364	!
	1365	!-- Initialize quantities for handling cloud physics
	1366	!-- This routine must be called before init_particles, because
	1367	!-- otherwise, array pt_d_t, needed in data_output_dvrp (called by
	1368	!-- init_particles) is not defined.
	1369	CALL init_cloud_physics
	1370	ENDIF
[1]	1371
	1372	!
	1373	!-- If required, initialize particles
[63]	1374	IF ( particle_advection ) CALL init_particles
[1]	1375
	1376	!
	1377	!-- Initialize quantities for special advections schemes
	1378	CALL init_advec
	1379
	1380	!
	1381	!-- Initialize Rayleigh damping factors
	1382	rdf = 0.0
	1383	IF ( rayleigh_damping_factor /= 0.0 ) THEN
[108]	1384	IF ( .NOT. ocean ) THEN
	1385	DO k = nzb+1, nzt
	1386	IF ( zu(k) >= rayleigh_damping_height ) THEN
	1387	rdf(k) = rayleigh_damping_factor * &
[1]	1388	( SIN( pi * 0.5 * ( zu(k) - rayleigh_damping_height ) &
	1389	/ ( zu(nzt) - rayleigh_damping_height ) )&
	1390	)**2
[108]	1391	ENDIF
	1392	ENDDO
	1393	ELSE
	1394	DO k = nzt, nzb+1, -1
	1395	IF ( zu(k) <= rayleigh_damping_height ) THEN
	1396	rdf(k) = rayleigh_damping_factor * &
	1397	( SIN( pi * 0.5 * ( rayleigh_damping_height - zu(k) ) &
	1398	/ ( rayleigh_damping_height - zu(nzb+1)))&
	1399	)**2
	1400	ENDIF
	1401	ENDDO
	1402	ENDIF
[1]	1403	ENDIF
	1404
	1405	!
[240]	1406	!-- Initialize the starting level and the vertical smoothing factor used for
	1407	!-- the external pressure gradient
	1408	dp_smooth_factor = 1.0
	1409	IF ( dp_external ) THEN
	1410	!
	1411	!-- Set the starting level dp_level_ind_b only if it has not been set before
	1412	!-- (e.g. in init_grid).
	1413	IF ( dp_level_ind_b == 0 ) THEN
	1414	ind_array = MINLOC( ABS( dp_level_b - zu ) )
	1415	dp_level_ind_b = ind_array(1) - 1 + nzb
	1416	! MINLOC uses lower array bound 1
	1417	ENDIF
	1418	IF ( dp_smooth ) THEN
	1419	dp_smooth_factor(:dp_level_ind_b) = 0.0
	1420	DO k = dp_level_ind_b+1, nzt
	1421	dp_smooth_factor(k) = 0.5 * ( 1.0 + SIN( pi * &
	1422	( REAL( k - dp_level_ind_b ) / &
	1423	REAL( nzt - dp_level_ind_b ) - 0.5 ) ) )
	1424	ENDDO
	1425	ENDIF
	1426	ENDIF
	1427
	1428	!
[1]	1429	!-- Initialize diffusivities used within the outflow damping layer in case of
	1430	!-- non-cyclic lateral boundaries. A linear increase is assumed over the first
	1431	!-- half of the width of the damping layer
[73]	1432	IF ( bc_lr == 'dirichlet/radiation' ) THEN
[1]	1433
	1434	DO i = nxl-1, nxr+1
[73]	1435	IF ( i >= nx - outflow_damping_width ) THEN
	1436	km_damp_x(i) = km_damp_max * MIN( 1.0, &
	1437	( i - ( nx - outflow_damping_width ) ) / &
	1438	REAL( outflow_damping_width/2 ) &
	1439	)
	1440	ELSE
	1441	km_damp_x(i) = 0.0
	1442	ENDIF
	1443	ENDDO
[1]	1444
[73]	1445	ELSEIF ( bc_lr == 'radiation/dirichlet' ) THEN
[1]	1446
[73]	1447	DO i = nxl-1, nxr+1
	1448	IF ( i <= outflow_damping_width ) THEN
	1449	km_damp_x(i) = km_damp_max * MIN( 1.0, &
	1450	( outflow_damping_width - i ) / &
	1451	REAL( outflow_damping_width/2 ) &
	1452	)
	1453	ELSE
	1454	km_damp_x(i) = 0.0
	1455	ENDIF
	1456	ENDDO
[1]	1457
[73]	1458	ENDIF
[1]	1459
[73]	1460	IF ( bc_ns == 'dirichlet/radiation' ) THEN
[1]	1461
[73]	1462	DO j = nys-1, nyn+1
	1463	IF ( j >= ny - outflow_damping_width ) THEN
	1464	km_damp_y(j) = km_damp_max * MIN( 1.0, &
	1465	( j - ( ny - outflow_damping_width ) ) / &
	1466	REAL( outflow_damping_width/2 ) &
	1467	)
	1468	ELSE
	1469	km_damp_y(j) = 0.0
[1]	1470	ENDIF
	1471	ENDDO
	1472
[73]	1473	ELSEIF ( bc_ns == 'radiation/dirichlet' ) THEN
[1]	1474
	1475	DO j = nys-1, nyn+1
[73]	1476	IF ( j <= outflow_damping_width ) THEN
	1477	km_damp_y(j) = km_damp_max * MIN( 1.0, &
	1478	( outflow_damping_width - j ) / &
	1479	REAL( outflow_damping_width/2 ) &
	1480	)
	1481	ELSE
	1482	km_damp_y(j) = 0.0
[1]	1483	ENDIF
[73]	1484	ENDDO
[1]	1485
	1486	ENDIF
	1487
	1488	!
	1489	!-- Initialize local summation arrays for UP flow_statistics. This is necessary
	1490	!-- because they may not yet have been initialized when they are called from
	1491	!-- flow_statistics (or - depending on the chosen model run - are never
	1492	!-- initialized)
	1493	sums_divnew_l = 0.0
	1494	sums_divold_l = 0.0
	1495	sums_l_l = 0.0
	1496	sums_up_fraction_l = 0.0
	1497	sums_wsts_bc_l = 0.0
	1498
	1499	!
	1500	!-- Pre-set masks for regional statistics. Default is the total model domain.
	1501	rmask = 1.0
	1502
	1503	!
[51]	1504	!-- User-defined initializing actions. Check afterwards, if maximum number
	1505	!-- of allowed timeseries is not exceeded
[1]	1506	CALL user_init
	1507
[51]	1508	IF ( dots_num > dots_max ) THEN
[254]	1509	WRITE( message_string, * ) 'number of time series quantities exceeds', &
[274]	1510	' its maximum of dots_max = ', dots_max, &
[254]	1511	' &Please increase dots_max in modules.f90.'
	1512	CALL message( 'init_3d_model', 'PA0194', 1, 2, 0, 6, 0 )
[51]	1513	ENDIF
	1514
[1]	1515	!
	1516	!-- Input binary data file is not needed anymore. This line must be placed
	1517	!-- after call of user_init!
	1518	CALL close_file( 13 )
	1519
	1520	!
	1521	!-- Compute total sum of active mask grid points
	1522	!-- ngp_2dh: number of grid points of a horizontal cross section through the
	1523	!-- total domain
	1524	!-- ngp_3d: number of grid points of the total domain
[132]	1525	ngp_2dh_outer_l = 0
	1526	ngp_2dh_outer = 0
	1527	ngp_2dh_s_inner_l = 0
	1528	ngp_2dh_s_inner = 0
	1529	ngp_2dh_l = 0
	1530	ngp_2dh = 0
[485]	1531	ngp_3d_inner_l = 0.0
[132]	1532	ngp_3d_inner = 0
	1533	ngp_3d = 0
	1534	ngp_sums = ( nz + 2 ) * ( pr_palm + max_pr_user )
[1]	1535
	1536	DO sr = 0, statistic_regions
	1537	DO i = nxl, nxr
	1538	DO j = nys, nyn
	1539	IF ( rmask(j,i,sr) == 1.0 ) THEN
	1540	!
	1541	!-- All xy-grid points
	1542	ngp_2dh_l(sr) = ngp_2dh_l(sr) + 1
	1543	!
	1544	!-- xy-grid points above topography
	1545	DO k = nzb_s_outer(j,i), nz + 1
	1546	ngp_2dh_outer_l(k,sr) = ngp_2dh_outer_l(k,sr) + 1
	1547	ENDDO
[132]	1548	DO k = nzb_s_inner(j,i), nz + 1
	1549	ngp_2dh_s_inner_l(k,sr) = ngp_2dh_s_inner_l(k,sr) + 1
	1550	ENDDO
[1]	1551	!
	1552	!-- All grid points of the total domain above topography
	1553	ngp_3d_inner_l(sr) = ngp_3d_inner_l(sr) + &
	1554	( nz - nzb_s_inner(j,i) + 2 )
	1555	ENDIF
	1556	ENDDO
	1557	ENDDO
	1558	ENDDO
	1559
	1560	sr = statistic_regions + 1
	1561	#if defined( __parallel )
[485]	1562	CALL MPI_ALLREDUCE( ngp_2dh_l(0), ngp_2dh(0), sr, MPI_INTEGER, MPI_SUM, &
[1]	1563	comm2d, ierr )
[485]	1564	CALL MPI_ALLREDUCE( ngp_2dh_outer_l(0,0), ngp_2dh_outer(0,0), (nz+2)*sr, &
[1]	1565	MPI_INTEGER, MPI_SUM, comm2d, ierr )
[485]	1566	CALL MPI_ALLREDUCE( ngp_2dh_s_inner_l(0,0), ngp_2dh_s_inner(0,0), &
[132]	1567	(nz+2)*sr, MPI_INTEGER, MPI_SUM, comm2d, ierr )
[485]	1568	CALL MPI_ALLREDUCE( ngp_3d_inner_l(0), ngp_3d_inner_tmp(0), sr, MPI_REAL, &
[1]	1569	MPI_SUM, comm2d, ierr )
[485]	1570	ngp_3d_inner = INT( ngp_3d_inner_tmp, KIND = SELECTED_INT_KIND( 18 ) )
[1]	1571	#else
[132]	1572	ngp_2dh = ngp_2dh_l
	1573	ngp_2dh_outer = ngp_2dh_outer_l
	1574	ngp_2dh_s_inner = ngp_2dh_s_inner_l
[485]	1575	ngp_3d_inner = INT( ngp_3d_inner_l, KIND = SELECTED_INT_KIND( 18 ) )
[1]	1576	#endif
	1577
[560]	1578	ngp_3d = INT ( ngp_2dh, KIND = SELECTED_INT_KIND( 18 ) ) * &
	1579	INT ( (nz + 2 ), KIND = SELECTED_INT_KIND( 18 ) )
[1]	1580
	1581	!
	1582	!-- Set a lower limit of 1 in order to avoid zero divisions in flow_statistics,
	1583	!-- buoyancy, etc. A zero value will occur for cases where all grid points of
	1584	!-- the respective subdomain lie below the surface topography
[333]	1585	ngp_2dh_outer = MAX( 1, ngp_2dh_outer(:,:) )
	1586	ngp_3d_inner = MAX( 1, ngp_3d_inner(:) )
	1587	ngp_2dh_s_inner = MAX( 1, ngp_2dh_s_inner(:,:) )
[1]	1588
[485]	1589	DEALLOCATE( ngp_2dh_l, ngp_2dh_outer_l, ngp_3d_inner_l, ngp_3d_inner_tmp )
[1]	1590
	1591
	1592	END SUBROUTINE init_3d_model

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