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source: palm/trunk/SOURCE/init_3d_model.f90 @ 505

Last change on this file since 505 was 486, checked in by raasch, 15 years ago
last commit documented
Property svn:keywords set to `Id`
File size: 56.1 KB

Rev	Line
[1]	1	#if defined( __ibmy_special )
	2	@PROCESS NOOPTimize
	3	#endif
	4	SUBROUTINE init_3d_model
	5
	6	!------------------------------------------------------------------------------!
[254]	7	! Current revisions:
[1]	8	! -----------------
[486]	9	!
[392]	10	!
	11	! Former revisions:
	12	! -----------------
	13	! $Id: init_3d_model.f90 486 2010-02-05 11:03:41Z raasch $
	14	!
[486]	15	! 485 2010-02-05 10:57:51Z raasch
	16	! calculation of ngp_3d + ngp_3d_inner changed because they have now 64 bit
	17	!
[482]	18	! 407 2009-12-01 15:01:15Z maronga
	19	! var_ts is replaced by dots_max
	20	! Enabled passive scalar/humidity wall fluxes for non-flat topography
	21	!
[392]	22	! 388 2009-09-23 09:40:33Z raasch
[388]	23	! Initialization of prho added.
[359]	24	! bugfix: correction of initial volume flow for non-flat topography
	25	! bugfix: zero initialization of arrays within buildings for 'cyclic_fill'
[333]	26	! bugfix: avoid that ngp_2dh_s_inner becomes zero
[328]	27	! initializing_actions='read_data_for_recycling' renamed to 'cyclic_fill', now
	28	! independent of turbulent_inflow
[254]	29	! Output of messages replaced by message handling routine.
[240]	30	! Set the starting level and the vertical smoothing factor used for
	31	! the external pressure gradient
[254]	32	! +conserve_volume_flow_mode: 'default', 'initial_profiles', 'inflow_profile'
[241]	33	! and 'bulk_velocity'
[292]	34	! If the inversion height calculated by the prerun is zero,
	35	! inflow_damping_height must be explicitly specified.
[139]	36	!
[198]	37	! 181 2008-07-30 07:07:47Z raasch
	38	! bugfix: zero assignments to tendency arrays in case of restarts,
	39	! further extensions and modifications in the initialisation of the plant
	40	! canopy model,
	41	! allocation of hom_sum moved to parin, initialization of spectrum_x\|y directly
	42	! after allocating theses arrays,
	43	! read data for recycling added as new initialization option,
	44	! dummy allocation for diss
	45	!
[139]	46	! 138 2007-11-28 10:03:58Z letzel
[132]	47	! New counter ngp_2dh_s_inner.
	48	! Allow new case bc_uv_t = 'dirichlet_0' for channel flow.
	49	! Corrected calculation of initial volume flow for 'set_1d-model_profiles' and
	50	! 'set_constant_profiles' in case of buildings in the reference cross-sections.
[77]	51	!
[110]	52	! 108 2007-08-24 15:10:38Z letzel
	53	! Flux initialization in case of coupled runs, +momentum fluxes at top boundary,
	54	! +arrays for phase speed c_u, c_v, c_w, indices for u\|v\|w_m_l\|r changed
	55	! +qswst_remote in case of atmosphere model with humidity coupled to ocean
	56	! Rayleigh damping for ocean, optionally calculate km and kh from initial
	57	! TKE e_init
	58	!
[98]	59	! 97 2007-06-21 08:23:15Z raasch
	60	! Initialization of salinity, call of init_ocean
	61	!
[90]	62	! 87 2007-05-22 15:46:47Z raasch
	63	! var_hom and var_sum renamed pr_palm
	64	!
[77]	65	! 75 2007-03-22 09:54:05Z raasch
[73]	66	! Arrays for radiation boundary conditions are allocated (u_m_l, u_m_r, etc.),
	67	! bugfix for cases with the outflow damping layer extending over more than one
[75]	68	! subdomain, moisture renamed humidity,
	69	! new initializing action "by_user" calls user_init_3d_model,
[72]	70	! precipitation_amount/rate, ts_value are allocated, +module netcdf_control,
[51]	71	! initial velocities at nzb+1 are regarded for volume
	72	! flow control in case they have been set zero before (to avoid small timesteps)
[75]	73	! -uvmean_outflow, uxrp, vynp eliminated
[1]	74	!
[39]	75	! 19 2007-02-23 04:53:48Z raasch
	76	! +handling of top fluxes
	77	!
[3]	78	! RCS Log replace by Id keyword, revision history cleaned up
	79	!
[1]	80	! Revision 1.49 2006/08/22 15:59:07 raasch
	81	! No optimization of this file on the ibmy (Yonsei Univ.)
	82	!
	83	! Revision 1.1 1998/03/09 16:22:22 raasch
	84	! Initial revision
	85	!
	86	!
	87	! Description:
	88	! ------------
	89	! Allocation of arrays and initialization of the 3D model via
	90	! a) pre-run the 1D model
	91	! or
	92	! b) pre-set constant linear profiles
	93	! or
	94	! c) read values of a previous run
	95	!------------------------------------------------------------------------------!
	96
	97	USE arrays_3d
	98	USE averaging
[72]	99	USE cloud_parameters
[1]	100	USE constants
	101	USE control_parameters
	102	USE cpulog
	103	USE indices
	104	USE interfaces
	105	USE model_1d
[51]	106	USE netcdf_control
[1]	107	USE particle_attributes
	108	USE pegrid
	109	USE profil_parameter
	110	USE random_function_mod
	111	USE statistics
	112
	113	IMPLICIT NONE
	114
[240]	115	INTEGER :: i, ind_array(1), j, k, sr
[1]	116
[485]	117	INTEGER, DIMENSION(:), ALLOCATABLE :: ngp_2dh_l
[1]	118
[132]	119	INTEGER, DIMENSION(:,:), ALLOCATABLE :: ngp_2dh_outer_l, &
	120	ngp_2dh_s_inner_l
[1]	121
[153]	122	REAL :: a, b
	123
[1]	124	REAL, DIMENSION(1:2) :: volume_flow_area_l, volume_flow_initial_l
	125
[485]	126	REAL, DIMENSION(:), ALLOCATABLE :: ngp_3d_inner_l, ngp_3d_inner_tmp
[1]	127
[485]	128
[1]	129	!
	130	!-- Allocate arrays
	131	ALLOCATE( ngp_2dh(0:statistic_regions), ngp_2dh_l(0:statistic_regions), &
	132	ngp_3d(0:statistic_regions), &
	133	ngp_3d_inner(0:statistic_regions), &
	134	ngp_3d_inner_l(0:statistic_regions), &
[485]	135	ngp_3d_inner_tmp(0:statistic_regions), &
[1]	136	sums_divnew_l(0:statistic_regions), &
	137	sums_divold_l(0:statistic_regions) )
[240]	138	ALLOCATE( dp_smooth_factor(nzb:nzt), rdf(nzb+1:nzt) )
[143]	139	ALLOCATE( ngp_2dh_outer(nzb:nzt+1,0:statistic_regions), &
[1]	140	ngp_2dh_outer_l(nzb:nzt+1,0:statistic_regions), &
[132]	141	ngp_2dh_s_inner(nzb:nzt+1,0:statistic_regions), &
	142	ngp_2dh_s_inner_l(nzb:nzt+1,0:statistic_regions), &
[1]	143	rmask(nys-1:nyn+1,nxl-1:nxr+1,0:statistic_regions), &
[87]	144	sums(nzb:nzt+1,pr_palm+max_pr_user), &
	145	sums_l(nzb:nzt+1,pr_palm+max_pr_user,0:threads_per_task-1), &
[1]	146	sums_l_l(nzb:nzt+1,0:statistic_regions,0:threads_per_task-1), &
	147	sums_up_fraction_l(10,3,0:statistic_regions), &
[48]	148	sums_wsts_bc_l(nzb:nzt+1,0:statistic_regions), &
[394]	149	ts_value(dots_max,0:statistic_regions) )
[1]	150	ALLOCATE( km_damp_x(nxl-1:nxr+1), km_damp_y(nys-1:nyn+1) )
	151
[19]	152	ALLOCATE( rif_1(nys-1:nyn+1,nxl-1:nxr+1), shf_1(nys-1:nyn+1,nxl-1:nxr+1), &
	153	ts(nys-1:nyn+1,nxl-1:nxr+1), tswst_1(nys-1:nyn+1,nxl-1:nxr+1), &
	154	us(nys-1:nyn+1,nxl-1:nxr+1), usws_1(nys-1:nyn+1,nxl-1:nxr+1), &
[102]	155	uswst_1(nys-1:nyn+1,nxl-1:nxr+1), &
	156	vsws_1(nys-1:nyn+1,nxl-1:nxr+1), &
	157	vswst_1(nys-1:nyn+1,nxl-1:nxr+1), z0(nys-1:nyn+1,nxl-1:nxr+1) )
[1]	158
	159	IF ( timestep_scheme(1:5) /= 'runge' ) THEN
	160	!
	161	!-- Leapfrog scheme needs two timelevels of diffusion quantities
[19]	162	ALLOCATE( rif_2(nys-1:nyn+1,nxl-1:nxr+1), &
	163	shf_2(nys-1:nyn+1,nxl-1:nxr+1), &
	164	tswst_2(nys-1:nyn+1,nxl-1:nxr+1), &
	165	usws_2(nys-1:nyn+1,nxl-1:nxr+1), &
[102]	166	uswst_2(nys-1:nyn+1,nxl-1:nxr+1), &
	167	vswst_2(nys-1:nyn+1,nxl-1:nxr+1), &
[1]	168	vsws_2(nys-1:nyn+1,nxl-1:nxr+1) )
	169	ENDIF
	170
[75]	171	ALLOCATE( d(nzb+1:nzta,nys:nyna,nxl:nxra), &
	172	e_1(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	173	e_2(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	174	e_3(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	175	kh_1(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	176	km_1(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	177	p(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	178	pt_1(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	179	pt_2(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	180	pt_3(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	181	tend(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	182	u_1(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	183	u_2(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	184	u_3(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	185	v_1(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	186	v_2(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	187	v_3(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	188	w_1(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	189	w_2(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
[1]	190	w_3(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1) )
	191
	192	IF ( timestep_scheme(1:5) /= 'runge' ) THEN
	193	ALLOCATE( kh_2(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	194	km_2(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1) )
	195	ENDIF
	196
[75]	197	IF ( humidity .OR. passive_scalar ) THEN
[1]	198	!
[75]	199	!-- 2D-humidity/scalar arrays
[1]	200	ALLOCATE ( qs(nys-1:nyn+1,nxl-1:nxr+1), &
[19]	201	qsws_1(nys-1:nyn+1,nxl-1:nxr+1), &
	202	qswst_1(nys-1:nyn+1,nxl-1:nxr+1) )
[1]	203
	204	IF ( timestep_scheme(1:5) /= 'runge' ) THEN
[19]	205	ALLOCATE( qsws_2(nys-1:nyn+1,nxl-1:nxr+1), &
	206	qswst_2(nys-1:nyn+1,nxl-1:nxr+1) )
[1]	207	ENDIF
	208	!
[75]	209	!-- 3D-humidity/scalar arrays
[1]	210	ALLOCATE( q_1(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	211	q_2(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	212	q_3(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1) )
	213
	214	!
[75]	215	!-- 3D-arrays needed for humidity only
	216	IF ( humidity ) THEN
[1]	217	ALLOCATE( vpt_1(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1) )
	218
	219	IF ( timestep_scheme(1:5) /= 'runge' ) THEN
	220	ALLOCATE( vpt_2(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1) )
	221	ENDIF
	222
	223	IF ( cloud_physics ) THEN
	224	!
	225	!-- Liquid water content
	226	ALLOCATE ( ql_1(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1) )
[72]	227	!
	228	!-- Precipitation amount and rate (only needed if output is switched)
	229	ALLOCATE( precipitation_amount(nys-1:nyn+1,nxl-1:nxr+1), &
	230	precipitation_rate(nys-1:nyn+1,nxl-1:nxr+1) )
[1]	231	ENDIF
	232
	233	IF ( cloud_droplets ) THEN
	234	!
	235	!-- Liquid water content, change in liquid water content,
	236	!-- real volume of particles (with weighting), volume of particles
	237	ALLOCATE ( ql_1(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	238	ql_2(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	239	ql_v(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	240	ql_vp(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1) )
	241	ENDIF
	242
	243	ENDIF
	244
	245	ENDIF
	246
[94]	247	IF ( ocean ) THEN
[95]	248	ALLOCATE( saswsb_1(nys-1:nyn+1,nxl-1:nxr+1), &
	249	saswst_1(nys-1:nyn+1,nxl-1:nxr+1) )
[388]	250	ALLOCATE( prho_1(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	251	rho_1(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	252	sa_1(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	253	sa_2(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
[94]	254	sa_3(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1) )
[388]	255	prho => prho_1
	256	rho => rho_1 ! routines calc_mean_profile and diffusion_e require
	257	! density to be apointer
[108]	258	IF ( humidity_remote ) THEN
	259	ALLOCATE( qswst_remote(nys-1:nyn+1,nxl-1:nxr+1) )
	260	qswst_remote = 0.0
	261	ENDIF
[94]	262	ENDIF
	263
[1]	264	!
	265	!-- 3D-array for storing the dissipation, needed for calculating the sgs
	266	!-- particle velocities
	267	IF ( use_sgs_for_particles ) THEN
	268	ALLOCATE ( diss(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1) )
[181]	269	ELSE
	270	ALLOCATE ( diss(2,2,2) ) ! required because diss is used as a
	271	! formal parameter
[1]	272	ENDIF
	273
	274	IF ( dt_dosp /= 9999999.9 ) THEN
	275	ALLOCATE( spectrum_x( 1:nx/2, 1:10, 1:10 ), &
	276	spectrum_y( 1:ny/2, 1:10, 1:10 ) )
[146]	277	spectrum_x = 0.0
	278	spectrum_y = 0.0
[1]	279	ENDIF
	280
	281	!
[138]	282	!-- 3D-arrays for the leaf area density and the canopy drag coefficient
	283	IF ( plant_canopy ) THEN
	284	ALLOCATE ( lad_s(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	285	lad_u(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	286	lad_v(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	287	lad_w(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	288	cdc(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1) )
[153]	289
	290	IF ( passive_scalar ) THEN
	291	ALLOCATE ( sls(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	292	sec(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1) )
	293	ENDIF
	294
	295	IF ( cthf /= 0.0 ) THEN
	296	ALLOCATE ( lai(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1), &
	297	canopy_heat_flux(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1) )
	298	ENDIF
	299
[138]	300	ENDIF
	301
	302	!
[51]	303	!-- 4D-array for storing the Rif-values at vertical walls
	304	IF ( topography /= 'flat' ) THEN
	305	ALLOCATE( rif_wall(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1,1:4) )
	306	rif_wall = 0.0
	307	ENDIF
	308
	309	!
	310	!-- Velocities at nzb+1 needed for volume flow control
	311	IF ( conserve_volume_flow ) THEN
	312	ALLOCATE( u_nzb_p1_for_vfc(nys:nyn), v_nzb_p1_for_vfc(nxl:nxr) )
	313	u_nzb_p1_for_vfc = 0.0
	314	v_nzb_p1_for_vfc = 0.0
	315	ENDIF
	316
	317	!
[106]	318	!-- Arrays to store velocity data from t-dt and the phase speeds which
	319	!-- are needed for radiation boundary conditions
[73]	320	IF ( outflow_l ) THEN
[106]	321	ALLOCATE( u_m_l(nzb:nzt+1,nys-1:nyn+1,1:2), &
	322	v_m_l(nzb:nzt+1,nys-1:nyn+1,0:1), &
	323	w_m_l(nzb:nzt+1,nys-1:nyn+1,0:1) )
[73]	324	ENDIF
	325	IF ( outflow_r ) THEN
[106]	326	ALLOCATE( u_m_r(nzb:nzt+1,nys-1:nyn+1,nx-1:nx), &
	327	v_m_r(nzb:nzt+1,nys-1:nyn+1,nx-1:nx), &
	328	w_m_r(nzb:nzt+1,nys-1:nyn+1,nx-1:nx) )
[73]	329	ENDIF
[106]	330	IF ( outflow_l .OR. outflow_r ) THEN
	331	ALLOCATE( c_u(nzb:nzt+1,nys-1:nyn+1), c_v(nzb:nzt+1,nys-1:nyn+1), &
	332	c_w(nzb:nzt+1,nys-1:nyn+1) )
	333	ENDIF
[73]	334	IF ( outflow_s ) THEN
[106]	335	ALLOCATE( u_m_s(nzb:nzt+1,0:1,nxl-1:nxr+1), &
	336	v_m_s(nzb:nzt+1,1:2,nxl-1:nxr+1), &
	337	w_m_s(nzb:nzt+1,0:1,nxl-1:nxr+1) )
[73]	338	ENDIF
	339	IF ( outflow_n ) THEN
[106]	340	ALLOCATE( u_m_n(nzb:nzt+1,ny-1:ny,nxl-1:nxr+1), &
	341	v_m_n(nzb:nzt+1,ny-1:ny,nxl-1:nxr+1), &
	342	w_m_n(nzb:nzt+1,ny-1:ny,nxl-1:nxr+1) )
[73]	343	ENDIF
[106]	344	IF ( outflow_s .OR. outflow_n ) THEN
	345	ALLOCATE( c_u(nzb:nzt+1,nxl-1:nxr+1), c_v(nzb:nzt+1,nxl-1:nxr+1), &
	346	c_w(nzb:nzt+1,nxl-1:nxr+1) )
	347	ENDIF
[73]	348
	349	!
[1]	350	!-- Initial assignment of the pointers
	351	IF ( timestep_scheme(1:5) /= 'runge' ) THEN
	352
[19]	353	rif_m => rif_1; rif => rif_2
	354	shf_m => shf_1; shf => shf_2
	355	tswst_m => tswst_1; tswst => tswst_2
	356	usws_m => usws_1; usws => usws_2
[102]	357	uswst_m => uswst_1; uswst => uswst_2
[19]	358	vsws_m => vsws_1; vsws => vsws_2
[102]	359	vswst_m => vswst_1; vswst => vswst_2
[1]	360	e_m => e_1; e => e_2; e_p => e_3; te_m => e_3
	361	kh_m => kh_1; kh => kh_2
	362	km_m => km_1; km => km_2
	363	pt_m => pt_1; pt => pt_2; pt_p => pt_3; tpt_m => pt_3
	364	u_m => u_1; u => u_2; u_p => u_3; tu_m => u_3
	365	v_m => v_1; v => v_2; v_p => v_3; tv_m => v_3
	366	w_m => w_1; w => w_2; w_p => w_3; tw_m => w_3
	367
[75]	368	IF ( humidity .OR. passive_scalar ) THEN
[19]	369	qsws_m => qsws_1; qsws => qsws_2
	370	qswst_m => qswst_1; qswst => qswst_2
[1]	371	q_m => q_1; q => q_2; q_p => q_3; tq_m => q_3
[75]	372	IF ( humidity ) vpt_m => vpt_1; vpt => vpt_2
[1]	373	IF ( cloud_physics ) ql => ql_1
	374	IF ( cloud_droplets ) THEN
	375	ql => ql_1
	376	ql_c => ql_2
	377	ENDIF
	378	ENDIF
	379
	380	ELSE
	381
[19]	382	rif => rif_1
	383	shf => shf_1
	384	tswst => tswst_1
	385	usws => usws_1
[102]	386	uswst => uswst_1
[19]	387	vsws => vsws_1
[102]	388	vswst => vswst_1
[19]	389	e => e_1; e_p => e_2; te_m => e_3; e_m => e_3
	390	kh => kh_1
	391	km => km_1
	392	pt => pt_1; pt_p => pt_2; tpt_m => pt_3; pt_m => pt_3
	393	u => u_1; u_p => u_2; tu_m => u_3; u_m => u_3
	394	v => v_1; v_p => v_2; tv_m => v_3; v_m => v_3
	395	w => w_1; w_p => w_2; tw_m => w_3; w_m => w_3
[1]	396
[75]	397	IF ( humidity .OR. passive_scalar ) THEN
[1]	398	qsws => qsws_1
[19]	399	qswst => qswst_1
[94]	400	q => q_1; q_p => q_2; tq_m => q_3; q_m => q_3
[75]	401	IF ( humidity ) vpt => vpt_1
[1]	402	IF ( cloud_physics ) ql => ql_1
	403	IF ( cloud_droplets ) THEN
	404	ql => ql_1
	405	ql_c => ql_2
	406	ENDIF
	407	ENDIF
	408
[94]	409	IF ( ocean ) THEN
[95]	410	saswsb => saswsb_1
[94]	411	saswst => saswst_1
	412	sa => sa_1; sa_p => sa_2; tsa_m => sa_3
	413	ENDIF
	414
[1]	415	ENDIF
	416
	417	!
	418	!-- Initialize model variables
[147]	419	IF ( TRIM( initializing_actions ) /= 'read_restart_data' .AND. &
[328]	420	TRIM( initializing_actions ) /= 'cyclic_fill' ) THEN
[1]	421	!
	422	!-- First model run of a possible job queue.
	423	!-- Initial profiles of the variables must be computes.
	424	IF ( INDEX( initializing_actions, 'set_1d-model_profiles' ) /= 0 ) THEN
	425	!
	426	!-- Use solutions of the 1D model as initial profiles,
	427	!-- start 1D model
	428	CALL init_1d_model
	429	!
	430	!-- Transfer initial profiles to the arrays of the 3D model
	431	DO i = nxl-1, nxr+1
	432	DO j = nys-1, nyn+1
	433	e(:,j,i) = e1d
	434	kh(:,j,i) = kh1d
	435	km(:,j,i) = km1d
	436	pt(:,j,i) = pt_init
	437	u(:,j,i) = u1d
	438	v(:,j,i) = v1d
	439	ENDDO
	440	ENDDO
	441
[75]	442	IF ( humidity .OR. passive_scalar ) THEN
[1]	443	DO i = nxl-1, nxr+1
	444	DO j = nys-1, nyn+1
	445	q(:,j,i) = q_init
	446	ENDDO
	447	ENDDO
	448	ENDIF
	449
	450	IF ( .NOT. constant_diffusion ) THEN
	451	DO i = nxl-1, nxr+1
	452	DO j = nys-1, nyn+1
	453	e(:,j,i) = e1d
	454	ENDDO
	455	ENDDO
	456	!
	457	!-- Store initial profiles for output purposes etc.
	458	hom(:,1,25,:) = SPREAD( l1d, 2, statistic_regions+1 )
	459
	460	IF ( prandtl_layer ) THEN
	461	rif = rif1d(nzb+1)
	462	ts = 0.0 ! could actually be computed more accurately in the
	463	! 1D model. Update when opportunity arises.
	464	us = us1d
	465	usws = usws1d
	466	vsws = vsws1d
	467	ELSE
	468	ts = 0.0 ! must be set, because used in
	469	rif = 0.0 ! flowste
	470	us = 0.0
	471	usws = 0.0
	472	vsws = 0.0
	473	ENDIF
	474
	475	ELSE
	476	e = 0.0 ! must be set, because used in
	477	rif = 0.0 ! flowste
	478	ts = 0.0
	479	us = 0.0
	480	usws = 0.0
	481	vsws = 0.0
	482	ENDIF
[102]	483	uswst = top_momentumflux_u
	484	vswst = top_momentumflux_v
[1]	485
	486	!
	487	!-- In every case qs = 0.0 (see also pt)
	488	!-- This could actually be computed more accurately in the 1D model.
	489	!-- Update when opportunity arises!
[75]	490	IF ( humidity .OR. passive_scalar ) qs = 0.0
[1]	491
	492	!
	493	!-- inside buildings set velocities back to zero
	494	IF ( topography /= 'flat' ) THEN
	495	DO i = nxl-1, nxr+1
	496	DO j = nys-1, nyn+1
	497	u(nzb:nzb_u_inner(j,i),j,i) = 0.0
	498	v(nzb:nzb_v_inner(j,i),j,i) = 0.0
	499	ENDDO
	500	ENDDO
[132]	501	IF ( conserve_volume_flow ) THEN
	502	IF ( nxr == nx ) THEN
	503	DO j = nys, nyn
	504	DO k = nzb + 1, nzb_u_inner(j,nx)
[359]	505	u_nzb_p1_for_vfc(j) = u_nzb_p1_for_vfc(j) + &
	506	u1d(k) * dzu(k)
[132]	507	ENDDO
	508	ENDDO
	509	ENDIF
	510	IF ( nyn == ny ) THEN
	511	DO i = nxl, nxr
	512	DO k = nzb + 1, nzb_v_inner(ny,i)
[359]	513	v_nzb_p1_for_vfc(i) = v_nzb_p1_for_vfc(i) + &
	514	v1d(k) * dzu(k)
[132]	515	ENDDO
	516	ENDDO
	517	ENDIF
	518	ENDIF
[1]	519	!
	520	!-- WARNING: The extra boundary conditions set after running the
	521	!-- ------- 1D model impose an error on the divergence one layer
	522	!-- below the topography; need to correct later
	523	!-- ATTENTION: Provisional correction for Piacsek & Williams
	524	!-- --------- advection scheme: keep u and v zero one layer below
	525	!-- the topography.
	526	IF ( ibc_uv_b == 0 ) THEN
	527	!
	528	!-- Satisfying the Dirichlet condition with an extra layer below
	529	!-- the surface where the u and v component change their sign.
	530	DO i = nxl-1, nxr+1
	531	DO j = nys-1, nyn+1
	532	IF ( nzb_u_inner(j,i) == 0 ) u(0,j,i) = -u(1,j,i)
	533	IF ( nzb_v_inner(j,i) == 0 ) v(0,j,i) = -v(1,j,i)
	534	ENDDO
	535	ENDDO
	536
	537	ELSE
	538	!
	539	!-- Neumann condition
	540	DO i = nxl-1, nxr+1
	541	DO j = nys-1, nyn+1
	542	IF ( nzb_u_inner(j,i) == 0 ) u(0,j,i) = u(1,j,i)
	543	IF ( nzb_v_inner(j,i) == 0 ) v(0,j,i) = v(1,j,i)
	544	ENDDO
	545	ENDDO
	546
	547	ENDIF
	548
	549	ENDIF
	550
	551	ELSEIF ( INDEX(initializing_actions, 'set_constant_profiles') /= 0 ) &
	552	THEN
	553	!
	554	!-- Use constructed initial profiles (velocity constant with height,
	555	!-- temperature profile with constant gradient)
	556	DO i = nxl-1, nxr+1
	557	DO j = nys-1, nyn+1
	558	pt(:,j,i) = pt_init
	559	u(:,j,i) = u_init
	560	v(:,j,i) = v_init
	561	ENDDO
	562	ENDDO
[75]	563
[1]	564	!
[292]	565	!-- Set initial horizontal velocities at the lowest computational grid
	566	!-- levels to zero in order to avoid too small time steps caused by the
	567	!-- diffusion limit in the initial phase of a run (at k=1, dz/2 occurs
	568	!-- in the limiting formula!). The original values are stored to be later
	569	!-- used for volume flow control.
[1]	570	DO i = nxl-1, nxr+1
	571	DO j = nys-1, nyn+1
	572	u(nzb:nzb_u_inner(j,i)+1,j,i) = 0.0
	573	v(nzb:nzb_v_inner(j,i)+1,j,i) = 0.0
	574	ENDDO
	575	ENDDO
[51]	576	IF ( conserve_volume_flow ) THEN
	577	IF ( nxr == nx ) THEN
	578	DO j = nys, nyn
[132]	579	DO k = nzb + 1, nzb_u_inner(j,nx) + 1
[359]	580	u_nzb_p1_for_vfc(j) = u_nzb_p1_for_vfc(j) + &
	581	u_init(k) * dzu(k)
[132]	582	ENDDO
[51]	583	ENDDO
	584	ENDIF
	585	IF ( nyn == ny ) THEN
	586	DO i = nxl, nxr
[132]	587	DO k = nzb + 1, nzb_v_inner(ny,i) + 1
[359]	588	v_nzb_p1_for_vfc(i) = v_nzb_p1_for_vfc(i) + &
	589	v_init(k) * dzu(k)
[132]	590	ENDDO
[51]	591	ENDDO
	592	ENDIF
	593	ENDIF
[1]	594
[75]	595	IF ( humidity .OR. passive_scalar ) THEN
[1]	596	DO i = nxl-1, nxr+1
	597	DO j = nys-1, nyn+1
	598	q(:,j,i) = q_init
	599	ENDDO
	600	ENDDO
	601	ENDIF
	602
[94]	603	IF ( ocean ) THEN
	604	DO i = nxl-1, nxr+1
	605	DO j = nys-1, nyn+1
	606	sa(:,j,i) = sa_init
	607	ENDDO
	608	ENDDO
	609	ENDIF
[1]	610
	611	IF ( constant_diffusion ) THEN
	612	km = km_constant
	613	kh = km / prandtl_number
[108]	614	e = 0.0
	615	ELSEIF ( e_init > 0.0 ) THEN
	616	DO k = nzb+1, nzt
	617	km(k,:,:) = 0.1 * l_grid(k) * SQRT( e_init )
	618	ENDDO
	619	km(nzb,:,:) = km(nzb+1,:,:)
	620	km(nzt+1,:,:) = km(nzt,:,:)
	621	kh = km / prandtl_number
	622	e = e_init
[1]	623	ELSE
[108]	624	IF ( .NOT. ocean ) THEN
	625	kh = 0.01 ! there must exist an initial diffusion, because
	626	km = 0.01 ! otherwise no TKE would be produced by the
	627	! production terms, as long as not yet
	628	! e = (u/cm)*2 at k=nzb+1
	629	ELSE
	630	kh = 0.00001
	631	km = 0.00001
	632	ENDIF
	633	e = 0.0
[1]	634	ENDIF
[102]	635	rif = 0.0
	636	ts = 0.0
	637	us = 0.0
	638	usws = 0.0
	639	uswst = top_momentumflux_u
	640	vsws = 0.0
	641	vswst = top_momentumflux_v
[75]	642	IF ( humidity .OR. passive_scalar ) qs = 0.0
[1]	643
	644	!
	645	!-- Compute initial temperature field and other constants used in case
	646	!-- of a sloping surface
	647	IF ( sloping_surface ) CALL init_slope
	648
[46]	649	ELSEIF ( INDEX(initializing_actions, 'by_user') /= 0 ) &
	650	THEN
	651	!
	652	!-- Initialization will completely be done by the user
	653	CALL user_init_3d_model
	654
[1]	655	ENDIF
	656
	657	!
[151]	658	!-- Apply channel flow boundary condition
[132]	659	IF ( TRIM( bc_uv_t ) == 'dirichlet_0' ) THEN
	660
	661	u(nzt+1,:,:) = 0.0
	662	v(nzt+1,:,:) = 0.0
	663
[151]	664	!-- For the Dirichlet condition to be correctly applied at the top, set
[132]	665	!-- ug and vg to zero there
	666	ug(nzt+1) = 0.0
	667	vg(nzt+1) = 0.0
	668
	669	ENDIF
	670
	671	!
[1]	672	!-- Calculate virtual potential temperature
[75]	673	IF ( humidity ) vpt = pt * ( 1.0 + 0.61 * q )
[1]	674
	675	!
	676	!-- Store initial profiles for output purposes etc.
	677	hom(:,1,5,:) = SPREAD( u(:,nys,nxl), 2, statistic_regions+1 )
	678	hom(:,1,6,:) = SPREAD( v(:,nys,nxl), 2, statistic_regions+1 )
	679	IF ( ibc_uv_b == 0 ) THEN
	680	hom(nzb,1,5,:) = -hom(nzb+1,1,5,:) ! due to satisfying the Dirichlet
	681	hom(nzb,1,6,:) = -hom(nzb+1,1,6,:) ! condition with an extra layer
	682	! below the surface where the u and v component change their sign
	683	ENDIF
	684	hom(:,1,7,:) = SPREAD( pt(:,nys,nxl), 2, statistic_regions+1 )
	685	hom(:,1,23,:) = SPREAD( km(:,nys,nxl), 2, statistic_regions+1 )
	686	hom(:,1,24,:) = SPREAD( kh(:,nys,nxl), 2, statistic_regions+1 )
	687
[97]	688	IF ( ocean ) THEN
	689	!
	690	!-- Store initial salinity profile
	691	hom(:,1,26,:) = SPREAD( sa(:,nys,nxl), 2, statistic_regions+1 )
	692	ENDIF
[1]	693
[75]	694	IF ( humidity ) THEN
[1]	695	!
	696	!-- Store initial profile of total water content, virtual potential
	697	!-- temperature
	698	hom(:,1,26,:) = SPREAD( q(:,nys,nxl), 2, statistic_regions+1 )
	699	hom(:,1,29,:) = SPREAD( vpt(:,nys,nxl), 2, statistic_regions+1 )
	700	IF ( cloud_physics .OR. cloud_droplets ) THEN
	701	!
	702	!-- Store initial profile of specific humidity and potential
	703	!-- temperature
	704	hom(:,1,27,:) = SPREAD( q(:,nys,nxl), 2, statistic_regions+1 )
	705	hom(:,1,28,:) = SPREAD( pt(:,nys,nxl), 2, statistic_regions+1 )
	706	ENDIF
	707	ENDIF
	708
	709	IF ( passive_scalar ) THEN
	710	!
	711	!-- Store initial scalar profile
	712	hom(:,1,26,:) = SPREAD( q(:,nys,nxl), 2, statistic_regions+1 )
	713	ENDIF
	714
	715	!
[19]	716	!-- Initialize fluxes at bottom surface
[1]	717	IF ( use_surface_fluxes ) THEN
	718
	719	IF ( constant_heatflux ) THEN
	720	!
	721	!-- Heat flux is prescribed
	722	IF ( random_heatflux ) THEN
	723	CALL disturb_heatflux
	724	ELSE
	725	shf = surface_heatflux
	726	!
	727	!-- Over topography surface_heatflux is replaced by wall_heatflux(0)
	728	IF ( TRIM( topography ) /= 'flat' ) THEN
	729	DO i = nxl-1, nxr+1
	730	DO j = nys-1, nyn+1
	731	IF ( nzb_s_inner(j,i) /= 0 ) THEN
	732	shf(j,i) = wall_heatflux(0)
	733	ENDIF
	734	ENDDO
	735	ENDDO
	736	ENDIF
	737	ENDIF
	738	IF ( ASSOCIATED( shf_m ) ) shf_m = shf
	739	ENDIF
	740
	741	!
	742	!-- Determine the near-surface water flux
[75]	743	IF ( humidity .OR. passive_scalar ) THEN
[1]	744	IF ( constant_waterflux ) THEN
	745	qsws = surface_waterflux
[407]	746	!
	747	!-- Over topography surface_waterflux is replaced by
	748	!-- wall_humidityflux(0)
	749	IF ( TRIM( topography ) /= 'flat' ) THEN
	750	wall_qflux = wall_humidityflux
	751	DO i = nxl-1, nxr+1
	752	DO j = nys-1, nyn+1
	753	IF ( nzb_s_inner(j,i) /= 0 ) THEN
	754	qsws(j,i) = wall_qflux(0)
	755	ENDIF
	756	ENDDO
	757	ENDDO
	758	ENDIF
[1]	759	IF ( ASSOCIATED( qsws_m ) ) qsws_m = qsws
	760	ENDIF
	761	ENDIF
	762
	763	ENDIF
	764
	765	!
[19]	766	!-- Initialize fluxes at top surface
[94]	767	!-- Currently, only the heatflux and salinity flux can be prescribed.
	768	!-- The latent flux is zero in this case!
[19]	769	IF ( use_top_fluxes ) THEN
	770
	771	IF ( constant_top_heatflux ) THEN
	772	!
	773	!-- Heat flux is prescribed
	774	tswst = top_heatflux
	775	IF ( ASSOCIATED( tswst_m ) ) tswst_m = tswst
	776
[75]	777	IF ( humidity .OR. passive_scalar ) THEN
[19]	778	qswst = 0.0
	779	IF ( ASSOCIATED( qswst_m ) ) qswst_m = qswst
	780	ENDIF
[94]	781
	782	IF ( ocean ) THEN
[95]	783	saswsb = bottom_salinityflux
[94]	784	saswst = top_salinityflux
	785	ENDIF
[102]	786	ENDIF
[19]	787
[102]	788	!
	789	!-- Initialization in case of a coupled model run
	790	IF ( coupling_mode == 'ocean_to_atmosphere' ) THEN
	791	tswst = 0.0
	792	IF ( ASSOCIATED( tswst_m ) ) tswst_m = tswst
	793	ENDIF
	794
[19]	795	ENDIF
	796
	797	!
[1]	798	!-- Initialize Prandtl layer quantities
	799	IF ( prandtl_layer ) THEN
	800
	801	z0 = roughness_length
	802
	803	IF ( .NOT. constant_heatflux ) THEN
	804	!
	805	!-- Surface temperature is prescribed. Here the heat flux cannot be
	806	!-- simply estimated, because therefore rif, u* and theta* would have
	807	!-- to be computed by iteration. This is why the heat flux is assumed
	808	!-- to be zero before the first time step. It approaches its correct
	809	!-- value in the course of the first few time steps.
	810	shf = 0.0
	811	IF ( ASSOCIATED( shf_m ) ) shf_m = 0.0
	812	ENDIF
	813
[75]	814	IF ( humidity .OR. passive_scalar ) THEN
[1]	815	IF ( .NOT. constant_waterflux ) THEN
	816	qsws = 0.0
	817	IF ( ASSOCIATED( qsws_m ) ) qsws_m = 0.0
	818	ENDIF
	819	ENDIF
	820
	821	ENDIF
	822
	823	!
[152]	824	!-- Calculate the initial volume flow at the right and north boundary
	825	IF ( conserve_volume_flow ) THEN
	826
	827	volume_flow_initial_l = 0.0
	828	volume_flow_area_l = 0.0
	829
	830	IF ( nxr == nx ) THEN
	831	DO j = nys, nyn
	832	DO k = nzb_2d(j,nx) + 1, nzt
	833	volume_flow_initial_l(1) = volume_flow_initial_l(1) + &
	834	u(k,j,nx) * dzu(k)
	835	volume_flow_area_l(1) = volume_flow_area_l(1) + dzu(k)
	836	ENDDO
	837	!
	838	!-- Correction if velocity at nzb+1 has been set zero further above
	839	volume_flow_initial_l(1) = volume_flow_initial_l(1) + &
	840	u_nzb_p1_for_vfc(j)
	841	ENDDO
	842	ENDIF
	843
	844	IF ( nyn == ny ) THEN
	845	DO i = nxl, nxr
	846	DO k = nzb_2d(ny,i) + 1, nzt
	847	volume_flow_initial_l(2) = volume_flow_initial_l(2) + &
	848	v(k,ny,i) * dzu(k)
	849	volume_flow_area_l(2) = volume_flow_area_l(2) + dzu(k)
	850	ENDDO
	851	!
	852	!-- Correction if velocity at nzb+1 has been set zero further above
	853	volume_flow_initial_l(2) = volume_flow_initial_l(2) + &
	854	v_nzb_p1_for_vfc(i)
	855	ENDDO
	856	ENDIF
	857
	858	#if defined( __parallel )
	859	CALL MPI_ALLREDUCE( volume_flow_initial_l(1), volume_flow_initial(1),&
	860	2, MPI_REAL, MPI_SUM, comm2d, ierr )
	861	CALL MPI_ALLREDUCE( volume_flow_area_l(1), volume_flow_area(1), &
	862	2, MPI_REAL, MPI_SUM, comm2d, ierr )
	863	#else
	864	volume_flow_initial = volume_flow_initial_l
	865	volume_flow_area = volume_flow_area_l
[241]	866	#endif
	867	!
	868	!-- In case of 'bulk_velocity' mode, volume_flow_initial is overridden
	869	!-- and calculated from u\|v_bulk instead.
	870	IF ( TRIM( conserve_volume_flow_mode ) == 'bulk_velocity' ) THEN
	871	volume_flow_initial(1) = u_bulk * volume_flow_area(1)
	872	volume_flow_initial(2) = v_bulk * volume_flow_area(2)
	873	ENDIF
	874
[152]	875	ENDIF
	876
	877	!
[1]	878	!-- For the moment, perturbation pressure and vertical velocity are zero
	879	p = 0.0; w = 0.0
	880
	881	!
	882	!-- Initialize array sums (must be defined in first call of pres)
	883	sums = 0.0
	884
	885	!
[72]	886	!-- Treating cloud physics, liquid water content and precipitation amount
	887	!-- are zero at beginning of the simulation
	888	IF ( cloud_physics ) THEN
	889	ql = 0.0
	890	IF ( precipitation ) precipitation_amount = 0.0
	891	ENDIF
[1]	892
	893	!
	894	!-- Impose vortex with vertical axis on the initial velocity profile
	895	IF ( INDEX( initializing_actions, 'initialize_vortex' ) /= 0 ) THEN
	896	CALL init_rankine
	897	ENDIF
	898
	899	!
	900	!-- Impose temperature anomaly (advection test only)
	901	IF ( INDEX( initializing_actions, 'initialize_ptanom' ) /= 0 ) THEN
	902	CALL init_pt_anomaly
	903	ENDIF
	904
	905	!
	906	!-- If required, change the surface temperature at the start of the 3D run
	907	IF ( pt_surface_initial_change /= 0.0 ) THEN
	908	pt(nzb,:,:) = pt(nzb,:,:) + pt_surface_initial_change
	909	ENDIF
	910
	911	!
	912	!-- If required, change the surface humidity/scalar at the start of the 3D
	913	!-- run
[75]	914	IF ( ( humidity .OR. passive_scalar ) .AND. &
[1]	915	q_surface_initial_change /= 0.0 ) THEN
	916	q(nzb,:,:) = q(nzb,:,:) + q_surface_initial_change
	917	ENDIF
	918
	919	!
	920	!-- Initialize the random number generator (from numerical recipes)
	921	CALL random_function_ini
	922
	923	!
	924	!-- Impose random perturbation on the horizontal velocity field and then
	925	!-- remove the divergences from the velocity field
	926	IF ( create_disturbances ) THEN
[75]	927	CALL disturb_field( nzb_u_inner, tend, u )
	928	CALL disturb_field( nzb_v_inner, tend, v )
[1]	929	n_sor = nsor_ini
	930	CALL pres
	931	n_sor = nsor
	932	ENDIF
	933
	934	!
	935	!-- Once again set the perturbation pressure explicitly to zero in order to
	936	!-- assure that it does not generate any divergences in the first time step.
	937	!-- At t=0 the velocity field is free of divergence (as constructed above).
	938	!-- Divergences being created during a time step are not yet known and thus
	939	!-- cannot be corrected during the time step yet.
	940	p = 0.0
	941
	942	!
	943	!-- Initialize old and new time levels.
	944	IF ( timestep_scheme(1:5) /= 'runge' ) THEN
	945	e_m = e; pt_m = pt; u_m = u; v_m = v; w_m = w; kh_m = kh; km_m = km
	946	ELSE
	947	te_m = 0.0; tpt_m = 0.0; tu_m = 0.0; tv_m = 0.0; tw_m = 0.0
	948	ENDIF
	949	e_p = e; pt_p = pt; u_p = u; v_p = v; w_p = w
	950
[75]	951	IF ( humidity .OR. passive_scalar ) THEN
[1]	952	IF ( ASSOCIATED( q_m ) ) q_m = q
	953	IF ( timestep_scheme(1:5) == 'runge' ) tq_m = 0.0
	954	q_p = q
[75]	955	IF ( humidity .AND. ASSOCIATED( vpt_m ) ) vpt_m = vpt
[1]	956	ENDIF
	957
[94]	958	IF ( ocean ) THEN
	959	tsa_m = 0.0
	960	sa_p = sa
	961	ENDIF
	962
[73]	963
[147]	964	ELSEIF ( TRIM( initializing_actions ) == 'read_restart_data' .OR. &
[328]	965	TRIM( initializing_actions ) == 'cyclic_fill' ) &
[1]	966	THEN
	967	!
[328]	968	!-- When reading data for cyclic fill of 3D prerun data, first read
[147]	969	!-- some of the global variables from restart file
[328]	970	IF ( TRIM( initializing_actions ) == 'cyclic_fill' ) THEN
[151]	971
[147]	972	WRITE (9,*) 'before read_parts_of_var_list'
	973	CALL local_flush( 9 )
	974	CALL read_parts_of_var_list
	975	WRITE (9,*) 'after read_parts_of_var_list'
	976	CALL local_flush( 9 )
	977	CALL close_file( 13 )
[328]	978
[151]	979	!
[328]	980	!-- Initialization of the turbulence recycling method
	981	IF ( turbulent_inflow ) THEN
	982	!
	983	!-- Store temporally and horizontally averaged vertical profiles to be
	984	!-- used as mean inflow profiles
	985	ALLOCATE( mean_inflow_profiles(nzb:nzt+1,5) )
[151]	986
[328]	987	mean_inflow_profiles(:,1) = hom_sum(:,1,0) ! u
	988	mean_inflow_profiles(:,2) = hom_sum(:,2,0) ! v
	989	mean_inflow_profiles(:,4) = hom_sum(:,4,0) ! pt
	990	mean_inflow_profiles(:,5) = hom_sum(:,8,0) ! e
[151]	991
	992	!
[328]	993	!-- Use these mean profiles for the inflow (provided that Dirichlet
	994	!-- conditions are used)
	995	IF ( inflow_l ) THEN
	996	DO j = nys-1, nyn+1
	997	DO k = nzb, nzt+1
	998	u(k,j,-1) = mean_inflow_profiles(k,1)
	999	v(k,j,-1) = mean_inflow_profiles(k,2)
	1000	w(k,j,-1) = 0.0
	1001	pt(k,j,-1) = mean_inflow_profiles(k,4)
	1002	e(k,j,-1) = mean_inflow_profiles(k,5)
	1003	ENDDO
[151]	1004	ENDDO
[328]	1005	ENDIF
[151]	1006
	1007	!
[328]	1008	!-- Calculate the damping factors to be used at the inflow. For a
	1009	!-- turbulent inflow the turbulent fluctuations have to be limited
	1010	!-- vertically because otherwise the turbulent inflow layer will grow
	1011	!-- in time.
	1012	IF ( inflow_damping_height == 9999999.9 ) THEN
[151]	1013	!
[328]	1014	!-- Default: use the inversion height calculated by the prerun; if
	1015	!-- this is zero, inflow_damping_height must be explicitly
	1016	!-- specified.
	1017	IF ( hom_sum(nzb+6,pr_palm,0) /= 0.0 ) THEN
	1018	inflow_damping_height = hom_sum(nzb+6,pr_palm,0)
	1019	ELSE
	1020	WRITE( message_string, * ) 'inflow_damping_height must be ',&
	1021	'explicitly specified because&the inversion height ', &
	1022	'calculated by the prerun is zero.'
	1023	CALL message( 'init_3d_model', 'PA0318', 1, 2, 0, 6, 0 )
	1024	ENDIF
	1025
[292]	1026	ENDIF
[151]	1027
[328]	1028	IF ( inflow_damping_width == 9999999.9 ) THEN
[151]	1029	!
[328]	1030	!-- Default for the transition range: one tenth of the undamped
	1031	!-- layer
	1032	inflow_damping_width = 0.1 * inflow_damping_height
[151]	1033
[328]	1034	ENDIF
[151]	1035
[328]	1036	ALLOCATE( inflow_damping_factor(nzb:nzt+1) )
[151]	1037
[328]	1038	DO k = nzb, nzt+1
[151]	1039
[328]	1040	IF ( zu(k) <= inflow_damping_height ) THEN
	1041	inflow_damping_factor(k) = 1.0
	1042	ELSEIF ( zu(k) <= inflow_damping_height + &
	1043	inflow_damping_width ) THEN
	1044	inflow_damping_factor(k) = 1.0 - &
[151]	1045	( zu(k) - inflow_damping_height ) / &
	1046	inflow_damping_width
[328]	1047	ELSE
	1048	inflow_damping_factor(k) = 0.0
	1049	ENDIF
[151]	1050
[328]	1051	ENDDO
	1052	ENDIF
[151]	1053
[147]	1054	ENDIF
	1055
[152]	1056	!
[163]	1057	!-- Read binary data from restart file
	1058	WRITE (9,*) 'before read_3d_binary'
	1059	CALL local_flush( 9 )
	1060	CALL read_3d_binary
	1061	WRITE (9,*) 'after read_3d_binary'
	1062	CALL local_flush( 9 )
	1063
	1064	!
[359]	1065	!-- Inside buildings set velocities and TKE back to zero
	1066	IF ( TRIM( initializing_actions ) == 'cyclic_fill' .AND. &
	1067	topography /= 'flat' ) THEN
	1068	!
	1069	!-- Correction of initial volume flow
	1070	IF ( conserve_volume_flow ) THEN
	1071	IF ( nxr == nx ) THEN
	1072	DO j = nys, nyn
	1073	DO k = nzb + 1, nzb_u_inner(j,nx)
	1074	u_nzb_p1_for_vfc(j) = u_nzb_p1_for_vfc(j) + &
	1075	u(k,j,nx) * dzu(k)
	1076	ENDDO
	1077	ENDDO
	1078	ENDIF
	1079	IF ( nyn == ny ) THEN
	1080	DO i = nxl, nxr
	1081	DO k = nzb + 1, nzb_v_inner(ny,i)
	1082	v_nzb_p1_for_vfc(i) = v_nzb_p1_for_vfc(i) + &
	1083	v(k,ny,i) * dzu(k)
	1084	ENDDO
	1085	ENDDO
	1086	ENDIF
	1087	ENDIF
	1088
	1089	!
	1090	!-- Inside buildings set velocities and TKE back to zero.
	1091	!-- Other scalars (pt, q, s, km, kh, p, sa, ...) are ignored at present,
	1092	!-- maybe revise later.
	1093	IF ( timestep_scheme(1:5) == 'runge' ) THEN
	1094	DO i = nxl-1, nxr+1
	1095	DO j = nys-1, nyn+1
	1096	u (nzb:nzb_u_inner(j,i),j,i) = 0.0
	1097	v (nzb:nzb_v_inner(j,i),j,i) = 0.0
	1098	w (nzb:nzb_w_inner(j,i),j,i) = 0.0
	1099	e (nzb:nzb_w_inner(j,i),j,i) = 0.0
	1100	u_m(nzb:nzb_u_inner(j,i),j,i) = 0.0
	1101	v_m(nzb:nzb_v_inner(j,i),j,i) = 0.0
	1102	w_m(nzb:nzb_w_inner(j,i),j,i) = 0.0
	1103	e_m(nzb:nzb_w_inner(j,i),j,i) = 0.0
	1104	tu_m(nzb:nzb_u_inner(j,i),j,i) = 0.0
	1105	tv_m(nzb:nzb_v_inner(j,i),j,i) = 0.0
	1106	tw_m(nzb:nzb_w_inner(j,i),j,i) = 0.0
	1107	te_m(nzb:nzb_w_inner(j,i),j,i) = 0.0
	1108	tpt_m(nzb:nzb_w_inner(j,i),j,i) = 0.0
	1109	ENDDO
	1110	ENDDO
	1111	ELSE
	1112	DO i = nxl-1, nxr+1
	1113	DO j = nys-1, nyn+1
	1114	u (nzb:nzb_u_inner(j,i),j,i) = 0.0
	1115	v (nzb:nzb_v_inner(j,i),j,i) = 0.0
	1116	w (nzb:nzb_w_inner(j,i),j,i) = 0.0
	1117	e (nzb:nzb_w_inner(j,i),j,i) = 0.0
	1118	u_m(nzb:nzb_u_inner(j,i),j,i) = 0.0
	1119	v_m(nzb:nzb_v_inner(j,i),j,i) = 0.0
	1120	w_m(nzb:nzb_w_inner(j,i),j,i) = 0.0
	1121	e_m(nzb:nzb_w_inner(j,i),j,i) = 0.0
	1122	u_p(nzb:nzb_u_inner(j,i),j,i) = 0.0
	1123	v_p(nzb:nzb_v_inner(j,i),j,i) = 0.0
	1124	w_p(nzb:nzb_w_inner(j,i),j,i) = 0.0
	1125	e_p(nzb:nzb_w_inner(j,i),j,i) = 0.0
	1126	ENDDO
	1127	ENDDO
	1128	ENDIF
	1129
	1130	ENDIF
	1131
	1132	!
[152]	1133	!-- Calculate the initial volume flow at the right and north boundary
[163]	1134	IF ( conserve_volume_flow .AND. &
[328]	1135	TRIM( initializing_actions ) == 'cyclic_fill' ) THEN
[151]	1136
[152]	1137	volume_flow_initial_l = 0.0
	1138	volume_flow_area_l = 0.0
	1139
	1140	IF ( nxr == nx ) THEN
	1141	DO j = nys, nyn
	1142	DO k = nzb_2d(j,nx) + 1, nzt
	1143	volume_flow_initial_l(1) = volume_flow_initial_l(1) + &
	1144	u(k,j,nx) * dzu(k)
	1145	volume_flow_area_l(1) = volume_flow_area_l(1) + dzu(k)
	1146	ENDDO
[147]	1147	!
[359]	1148	!-- Correction if velocity inside buildings has been set to zero
	1149	!-- further above
[152]	1150	volume_flow_initial_l(1) = volume_flow_initial_l(1) + &
	1151	u_nzb_p1_for_vfc(j)
	1152	ENDDO
	1153	ENDIF
	1154
	1155	IF ( nyn == ny ) THEN
	1156	DO i = nxl, nxr
	1157	DO k = nzb_2d(ny,i) + 1, nzt
	1158	volume_flow_initial_l(2) = volume_flow_initial_l(2) + &
	1159	v(k,ny,i) * dzu(k)
	1160	volume_flow_area_l(2) = volume_flow_area_l(2) + dzu(k)
	1161	ENDDO
	1162	!
[359]	1163	!-- Correction if velocity inside buildings has been set to zero
	1164	!-- further above
[152]	1165	volume_flow_initial_l(2) = volume_flow_initial_l(2) + &
	1166	v_nzb_p1_for_vfc(i)
	1167	ENDDO
	1168	ENDIF
	1169
	1170	#if defined( __parallel )
	1171	CALL MPI_ALLREDUCE( volume_flow_initial_l(1), volume_flow_initial(1),&
	1172	2, MPI_REAL, MPI_SUM, comm2d, ierr )
	1173	CALL MPI_ALLREDUCE( volume_flow_area_l(1), volume_flow_area(1), &
	1174	2, MPI_REAL, MPI_SUM, comm2d, ierr )
	1175	#else
	1176	volume_flow_initial = volume_flow_initial_l
	1177	volume_flow_area = volume_flow_area_l
	1178	#endif
	1179	ENDIF
	1180
	1181
	1182	!
[1]	1183	!-- Calculate initial temperature field and other constants used in case
	1184	!-- of a sloping surface
	1185	IF ( sloping_surface ) CALL init_slope
	1186
	1187	!
	1188	!-- Initialize new time levels (only done in order to set boundary values
	1189	!-- including ghost points)
	1190	e_p = e; pt_p = pt; u_p = u; v_p = v; w_p = w
[75]	1191	IF ( humidity .OR. passive_scalar ) q_p = q
[94]	1192	IF ( ocean ) sa_p = sa
[1]	1193
[181]	1194	!
	1195	!-- Allthough tendency arrays are set in prognostic_equations, they have
	1196	!-- have to be predefined here because they are used (but multiplied with 0)
	1197	!-- there before they are set.
	1198	IF ( timestep_scheme(1:5) == 'runge' ) THEN
	1199	te_m = 0.0; tpt_m = 0.0; tu_m = 0.0; tv_m = 0.0; tw_m = 0.0
	1200	IF ( humidity .OR. passive_scalar ) tq_m = 0.0
	1201	IF ( ocean ) tsa_m = 0.0
	1202	ENDIF
	1203
[1]	1204	ELSE
	1205	!
	1206	!-- Actually this part of the programm should not be reached
[254]	1207	message_string = 'unknown initializing problem'
	1208	CALL message( 'init_3d_model', 'PA0193', 1, 2, 0, 6, 0 )
[1]	1209	ENDIF
	1210
[151]	1211
	1212	IF ( TRIM( initializing_actions ) /= 'read_restart_data' ) THEN
[1]	1213	!
[151]	1214	!-- Initialize old timelevels needed for radiation boundary conditions
	1215	IF ( outflow_l ) THEN
	1216	u_m_l(:,:,:) = u(:,:,1:2)
	1217	v_m_l(:,:,:) = v(:,:,0:1)
	1218	w_m_l(:,:,:) = w(:,:,0:1)
	1219	ENDIF
	1220	IF ( outflow_r ) THEN
	1221	u_m_r(:,:,:) = u(:,:,nx-1:nx)
	1222	v_m_r(:,:,:) = v(:,:,nx-1:nx)
	1223	w_m_r(:,:,:) = w(:,:,nx-1:nx)
	1224	ENDIF
	1225	IF ( outflow_s ) THEN
	1226	u_m_s(:,:,:) = u(:,0:1,:)
	1227	v_m_s(:,:,:) = v(:,1:2,:)
	1228	w_m_s(:,:,:) = w(:,0:1,:)
	1229	ENDIF
	1230	IF ( outflow_n ) THEN
	1231	u_m_n(:,:,:) = u(:,ny-1:ny,:)
	1232	v_m_n(:,:,:) = v(:,ny-1:ny,:)
	1233	w_m_n(:,:,:) = w(:,ny-1:ny,:)
	1234	ENDIF
	1235
	1236	ENDIF
	1237
	1238	!
[138]	1239	!-- Initialization of the leaf area density
	1240	IF ( plant_canopy ) THEN
	1241
	1242	SELECT CASE ( TRIM( canopy_mode ) )
	1243
	1244	CASE( 'block' )
	1245
	1246	DO i = nxl-1, nxr+1
	1247	DO j = nys-1, nyn+1
	1248	lad_s(:,j,i) = lad(:)
	1249	cdc(:,j,i) = drag_coefficient
[153]	1250	IF ( passive_scalar ) THEN
	1251	sls(:,j,i) = leaf_surface_concentration
	1252	sec(:,j,i) = scalar_exchange_coefficient
	1253	ENDIF
[138]	1254	ENDDO
	1255	ENDDO
	1256
	1257	CASE DEFAULT
	1258
	1259	!
	1260	!-- The DEFAULT case is reached either if the parameter
	1261	!-- canopy mode contains a wrong character string or if the
	1262	!-- user has coded a special case in the user interface.
	1263	!-- There, the subroutine user_init_plant_canopy checks
	1264	!-- which of these two conditions applies.
	1265	CALL user_init_plant_canopy
	1266
	1267	END SELECT
	1268
	1269	CALL exchange_horiz( lad_s )
	1270	CALL exchange_horiz( cdc )
	1271
[153]	1272	IF ( passive_scalar ) THEN
	1273	CALL exchange_horiz( sls )
	1274	CALL exchange_horiz( sec )
	1275	ENDIF
	1276
	1277	!
	1278	!-- Sharp boundaries of the plant canopy in horizontal directions
	1279	!-- In vertical direction the interpolation is retained, as the leaf
	1280	!-- area density is initialised by prescribing a vertical profile
	1281	!-- consisting of piecewise linear segments. The upper boundary
	1282	!-- of the plant canopy is now defined by lad_w(pch_index,:,:) = 0.0.
	1283
[138]	1284	DO i = nxl, nxr
	1285	DO j = nys, nyn
	1286	DO k = nzb, nzt+1
[153]	1287	IF ( lad_s(k,j,i) > 0.0 ) THEN
	1288	lad_u(k,j,i) = lad_s(k,j,i)
	1289	lad_u(k,j,i+1) = lad_s(k,j,i)
	1290	lad_v(k,j,i) = lad_s(k,j,i)
	1291	lad_v(k,j+1,i) = lad_s(k,j,i)
	1292	ENDIF
[138]	1293	ENDDO
	1294	DO k = nzb, nzt
	1295	lad_w(k,j,i) = 0.5 * ( lad_s(k+1,j,i) + lad_s(k,j,i) )
	1296	ENDDO
	1297	ENDDO
	1298	ENDDO
	1299
[153]	1300	lad_w(pch_index,:,:) = 0.0
	1301	lad_w(nzt+1,:,:) = lad_w(nzt,:,:)
[138]	1302
	1303	CALL exchange_horiz( lad_u )
	1304	CALL exchange_horiz( lad_v )
	1305	CALL exchange_horiz( lad_w )
[153]	1306
	1307	!
	1308	!-- Initialisation of the canopy heat source distribution
	1309	IF ( cthf /= 0.0 ) THEN
	1310	!
	1311	!-- Piecewise evaluation of the leaf area index by
	1312	!-- integration of the leaf area density
	1313	lai(:,:,:) = 0.0
	1314	DO i = nxl-1, nxr+1
	1315	DO j = nys-1, nyn+1
	1316	DO k = pch_index-1, 0, -1
	1317	lai(k,j,i) = lai(k+1,j,i) + &
	1318	( 0.5 * ( lad_w(k+1,j,i) + &
	1319	lad_s(k+1,j,i) ) * &
	1320	( zw(k+1) - zu(k+1) ) ) + &
	1321	( 0.5 * ( lad_w(k,j,i) + &
	1322	lad_s(k+1,j,i) ) * &
	1323	( zu(k+1) - zw(k) ) )
	1324	ENDDO
	1325	ENDDO
	1326	ENDDO
	1327
	1328	!
	1329	!-- Evaluation of the upward kinematic vertical heat flux within the
	1330	!-- canopy
	1331	DO i = nxl-1, nxr+1
	1332	DO j = nys-1, nyn+1
	1333	DO k = 0, pch_index
	1334	canopy_heat_flux(k,j,i) = cthf * &
	1335	exp( -0.6 * lai(k,j,i) )
	1336	ENDDO
	1337	ENDDO
	1338	ENDDO
	1339
	1340	!
	1341	!-- The near surface heat flux is derived from the heat flux
	1342	!-- distribution within the canopy
	1343	shf(:,:) = canopy_heat_flux(0,:,:)
	1344
	1345	IF ( ASSOCIATED( shf_m ) ) shf_m = shf
	1346
	1347	ENDIF
	1348
[138]	1349	ENDIF
	1350
	1351	!
[1]	1352	!-- If required, initialize dvrp-software
	1353	IF ( dt_dvrp /= 9999999.9 ) CALL init_dvrp
	1354
[96]	1355	IF ( ocean ) THEN
[1]	1356	!
[96]	1357	!-- Initialize quantities needed for the ocean model
	1358	CALL init_ocean
[388]	1359
[96]	1360	ELSE
	1361	!
	1362	!-- Initialize quantities for handling cloud physics
	1363	!-- This routine must be called before init_particles, because
	1364	!-- otherwise, array pt_d_t, needed in data_output_dvrp (called by
	1365	!-- init_particles) is not defined.
	1366	CALL init_cloud_physics
	1367	ENDIF
[1]	1368
	1369	!
	1370	!-- If required, initialize particles
[63]	1371	IF ( particle_advection ) CALL init_particles
[1]	1372
	1373	!
	1374	!-- Initialize quantities for special advections schemes
	1375	CALL init_advec
	1376
	1377	!
	1378	!-- Initialize Rayleigh damping factors
	1379	rdf = 0.0
	1380	IF ( rayleigh_damping_factor /= 0.0 ) THEN
[108]	1381	IF ( .NOT. ocean ) THEN
	1382	DO k = nzb+1, nzt
	1383	IF ( zu(k) >= rayleigh_damping_height ) THEN
	1384	rdf(k) = rayleigh_damping_factor * &
[1]	1385	( SIN( pi * 0.5 * ( zu(k) - rayleigh_damping_height ) &
	1386	/ ( zu(nzt) - rayleigh_damping_height ) )&
	1387	)**2
[108]	1388	ENDIF
	1389	ENDDO
	1390	ELSE
	1391	DO k = nzt, nzb+1, -1
	1392	IF ( zu(k) <= rayleigh_damping_height ) THEN
	1393	rdf(k) = rayleigh_damping_factor * &
	1394	( SIN( pi * 0.5 * ( rayleigh_damping_height - zu(k) ) &
	1395	/ ( rayleigh_damping_height - zu(nzb+1)))&
	1396	)**2
	1397	ENDIF
	1398	ENDDO
	1399	ENDIF
[1]	1400	ENDIF
	1401
	1402	!
[240]	1403	!-- Initialize the starting level and the vertical smoothing factor used for
	1404	!-- the external pressure gradient
	1405	dp_smooth_factor = 1.0
	1406	IF ( dp_external ) THEN
	1407	!
	1408	!-- Set the starting level dp_level_ind_b only if it has not been set before
	1409	!-- (e.g. in init_grid).
	1410	IF ( dp_level_ind_b == 0 ) THEN
	1411	ind_array = MINLOC( ABS( dp_level_b - zu ) )
	1412	dp_level_ind_b = ind_array(1) - 1 + nzb
	1413	! MINLOC uses lower array bound 1
	1414	ENDIF
	1415	IF ( dp_smooth ) THEN
	1416	dp_smooth_factor(:dp_level_ind_b) = 0.0
	1417	DO k = dp_level_ind_b+1, nzt
	1418	dp_smooth_factor(k) = 0.5 * ( 1.0 + SIN( pi * &
	1419	( REAL( k - dp_level_ind_b ) / &
	1420	REAL( nzt - dp_level_ind_b ) - 0.5 ) ) )
	1421	ENDDO
	1422	ENDIF
	1423	ENDIF
	1424
	1425	!
[1]	1426	!-- Initialize diffusivities used within the outflow damping layer in case of
	1427	!-- non-cyclic lateral boundaries. A linear increase is assumed over the first
	1428	!-- half of the width of the damping layer
[73]	1429	IF ( bc_lr == 'dirichlet/radiation' ) THEN
[1]	1430
	1431	DO i = nxl-1, nxr+1
[73]	1432	IF ( i >= nx - outflow_damping_width ) THEN
	1433	km_damp_x(i) = km_damp_max * MIN( 1.0, &
	1434	( i - ( nx - outflow_damping_width ) ) / &
	1435	REAL( outflow_damping_width/2 ) &
	1436	)
	1437	ELSE
	1438	km_damp_x(i) = 0.0
	1439	ENDIF
	1440	ENDDO
[1]	1441
[73]	1442	ELSEIF ( bc_lr == 'radiation/dirichlet' ) THEN
[1]	1443
[73]	1444	DO i = nxl-1, nxr+1
	1445	IF ( i <= outflow_damping_width ) THEN
	1446	km_damp_x(i) = km_damp_max * MIN( 1.0, &
	1447	( outflow_damping_width - i ) / &
	1448	REAL( outflow_damping_width/2 ) &
	1449	)
	1450	ELSE
	1451	km_damp_x(i) = 0.0
	1452	ENDIF
	1453	ENDDO
[1]	1454
[73]	1455	ENDIF
[1]	1456
[73]	1457	IF ( bc_ns == 'dirichlet/radiation' ) THEN
[1]	1458
[73]	1459	DO j = nys-1, nyn+1
	1460	IF ( j >= ny - outflow_damping_width ) THEN
	1461	km_damp_y(j) = km_damp_max * MIN( 1.0, &
	1462	( j - ( ny - outflow_damping_width ) ) / &
	1463	REAL( outflow_damping_width/2 ) &
	1464	)
	1465	ELSE
	1466	km_damp_y(j) = 0.0
[1]	1467	ENDIF
	1468	ENDDO
	1469
[73]	1470	ELSEIF ( bc_ns == 'radiation/dirichlet' ) THEN
[1]	1471
	1472	DO j = nys-1, nyn+1
[73]	1473	IF ( j <= outflow_damping_width ) THEN
	1474	km_damp_y(j) = km_damp_max * MIN( 1.0, &
	1475	( outflow_damping_width - j ) / &
	1476	REAL( outflow_damping_width/2 ) &
	1477	)
	1478	ELSE
	1479	km_damp_y(j) = 0.0
[1]	1480	ENDIF
[73]	1481	ENDDO
[1]	1482
	1483	ENDIF
	1484
	1485	!
	1486	!-- Initialize local summation arrays for UP flow_statistics. This is necessary
	1487	!-- because they may not yet have been initialized when they are called from
	1488	!-- flow_statistics (or - depending on the chosen model run - are never
	1489	!-- initialized)
	1490	sums_divnew_l = 0.0
	1491	sums_divold_l = 0.0
	1492	sums_l_l = 0.0
	1493	sums_up_fraction_l = 0.0
	1494	sums_wsts_bc_l = 0.0
	1495
	1496	!
	1497	!-- Pre-set masks for regional statistics. Default is the total model domain.
	1498	rmask = 1.0
	1499
	1500	!
[51]	1501	!-- User-defined initializing actions. Check afterwards, if maximum number
	1502	!-- of allowed timeseries is not exceeded
[1]	1503	CALL user_init
	1504
[51]	1505	IF ( dots_num > dots_max ) THEN
[254]	1506	WRITE( message_string, * ) 'number of time series quantities exceeds', &
[274]	1507	' its maximum of dots_max = ', dots_max, &
[254]	1508	' &Please increase dots_max in modules.f90.'
	1509	CALL message( 'init_3d_model', 'PA0194', 1, 2, 0, 6, 0 )
[51]	1510	ENDIF
	1511
[1]	1512	!
	1513	!-- Input binary data file is not needed anymore. This line must be placed
	1514	!-- after call of user_init!
	1515	CALL close_file( 13 )
	1516
	1517	!
	1518	!-- Compute total sum of active mask grid points
	1519	!-- ngp_2dh: number of grid points of a horizontal cross section through the
	1520	!-- total domain
	1521	!-- ngp_3d: number of grid points of the total domain
[132]	1522	ngp_2dh_outer_l = 0
	1523	ngp_2dh_outer = 0
	1524	ngp_2dh_s_inner_l = 0
	1525	ngp_2dh_s_inner = 0
	1526	ngp_2dh_l = 0
	1527	ngp_2dh = 0
[485]	1528	ngp_3d_inner_l = 0.0
[132]	1529	ngp_3d_inner = 0
	1530	ngp_3d = 0
	1531	ngp_sums = ( nz + 2 ) * ( pr_palm + max_pr_user )
[1]	1532
	1533	DO sr = 0, statistic_regions
	1534	DO i = nxl, nxr
	1535	DO j = nys, nyn
	1536	IF ( rmask(j,i,sr) == 1.0 ) THEN
	1537	!
	1538	!-- All xy-grid points
	1539	ngp_2dh_l(sr) = ngp_2dh_l(sr) + 1
	1540	!
	1541	!-- xy-grid points above topography
	1542	DO k = nzb_s_outer(j,i), nz + 1
	1543	ngp_2dh_outer_l(k,sr) = ngp_2dh_outer_l(k,sr) + 1
	1544	ENDDO
[132]	1545	DO k = nzb_s_inner(j,i), nz + 1
	1546	ngp_2dh_s_inner_l(k,sr) = ngp_2dh_s_inner_l(k,sr) + 1
	1547	ENDDO
[1]	1548	!
	1549	!-- All grid points of the total domain above topography
	1550	ngp_3d_inner_l(sr) = ngp_3d_inner_l(sr) + &
	1551	( nz - nzb_s_inner(j,i) + 2 )
	1552	ENDIF
	1553	ENDDO
	1554	ENDDO
	1555	ENDDO
	1556
	1557	sr = statistic_regions + 1
	1558	#if defined( __parallel )
[485]	1559	CALL MPI_ALLREDUCE( ngp_2dh_l(0), ngp_2dh(0), sr, MPI_INTEGER, MPI_SUM, &
[1]	1560	comm2d, ierr )
[485]	1561	CALL MPI_ALLREDUCE( ngp_2dh_outer_l(0,0), ngp_2dh_outer(0,0), (nz+2)*sr, &
[1]	1562	MPI_INTEGER, MPI_SUM, comm2d, ierr )
[485]	1563	CALL MPI_ALLREDUCE( ngp_2dh_s_inner_l(0,0), ngp_2dh_s_inner(0,0), &
[132]	1564	(nz+2)*sr, MPI_INTEGER, MPI_SUM, comm2d, ierr )
[485]	1565	CALL MPI_ALLREDUCE( ngp_3d_inner_l(0), ngp_3d_inner_tmp(0), sr, MPI_REAL, &
[1]	1566	MPI_SUM, comm2d, ierr )
[485]	1567	ngp_3d_inner = INT( ngp_3d_inner_tmp, KIND = SELECTED_INT_KIND( 18 ) )
[1]	1568	#else
[132]	1569	ngp_2dh = ngp_2dh_l
	1570	ngp_2dh_outer = ngp_2dh_outer_l
	1571	ngp_2dh_s_inner = ngp_2dh_s_inner_l
[485]	1572	ngp_3d_inner = INT( ngp_3d_inner_l, KIND = SELECTED_INT_KIND( 18 ) )
[1]	1573	#endif
	1574
[485]	1575	ngp_3d = INT( ngp_2dh * ( nz + 2 ), KIND = SELECTED_INT_KIND( 18 ) )
[1]	1576
	1577	!
	1578	!-- Set a lower limit of 1 in order to avoid zero divisions in flow_statistics,
	1579	!-- buoyancy, etc. A zero value will occur for cases where all grid points of
	1580	!-- the respective subdomain lie below the surface topography
[333]	1581	ngp_2dh_outer = MAX( 1, ngp_2dh_outer(:,:) )
	1582	ngp_3d_inner = MAX( 1, ngp_3d_inner(:) )
	1583	ngp_2dh_s_inner = MAX( 1, ngp_2dh_s_inner(:,:) )
[1]	1584
[485]	1585	DEALLOCATE( ngp_2dh_l, ngp_2dh_outer_l, ngp_3d_inner_l, ngp_3d_inner_tmp )
[1]	1586
	1587
	1588	END SUBROUTINE init_3d_model

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