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source: palm/trunk/SOURCE/init_3d_model.f90 @ 2232

Last change on this file since 2232 was 2232, checked in by suehring, 7 years ago

Adjustments according new topography and surface-modelling concept implemented

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/palm/branches/forwind/SOURCE/init_3d_model.f90 1564-1913

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[1682]	1	!> @file init_3d_model.f90
[2000]	2	!------------------------------------------------------------------------------!
[1036]	3	! This file is part of PALM.
	4	!
[2000]	5	! PALM is free software: you can redistribute it and/or modify it under the
	6	! terms of the GNU General Public License as published by the Free Software
	7	! Foundation, either version 3 of the License, or (at your option) any later
	8	! version.
[1036]	9	!
	10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	13	!
	14	! You should have received a copy of the GNU General Public License along with
	15	! PALM. If not, see <http://www.gnu.org/licenses/>.
	16	!
[2101]	17	! Copyright 1997-2017 Leibniz Universitaet Hannover
[2000]	18	!------------------------------------------------------------------------------!
[1036]	19	!
[254]	20	! Current revisions:
[732]	21	! ------------------
[2232]	22	! Adjustments to new topography and surface concept:
	23	! - Modify passed parameters for disturb_field
	24	! - Topography representation via flags
	25	! - Remove unused arrays.
	26	! - Move initialization of surface-related quantities to surface_mod
[1961]	27	!
	28	! Former revisions:
	29	! -----------------
	30	! $Id: init_3d_model.f90 2232 2017-05-30 17:47:52Z suehring $
	31	!
[2173]	32	! 2172 2017-03-08 15:55:25Z knoop
	33	! Bugfix: moved parallel random generator initialization into its module
	34	!
[2119]	35	! 2118 2017-01-17 16:38:49Z raasch
	36	! OpenACC directives removed
	37	!
[2038]	38	! 2037 2016-10-26 11:15:40Z knoop
	39	! Anelastic approximation implemented
	40	!
[2032]	41	! 2031 2016-10-21 15:11:58Z knoop
	42	! renamed variable rho to rho_ocean
	43	!
[2012]	44	! 2011 2016-09-19 17:29:57Z kanani
	45	! Flag urban_surface is now defined in module control_parameters.
	46	!
[2008]	47	! 2007 2016-08-24 15:47:17Z kanani
	48	! Added support for urban surface model,
	49	! adjusted location_message in case of plant_canopy
	50	!
[2001]	51	! 2000 2016-08-20 18:09:15Z knoop
	52	! Forced header and separation lines into 80 columns
	53	!
[1993]	54	! 1992 2016-08-12 15:14:59Z suehring
	55	! Initializaton of scalarflux at model top
	56	! Bugfixes in initialization of surface and top salinity flux, top scalar and
	57	! humidity fluxes
	58	!
[1961]	59	! 1960 2016-07-12 16:34:24Z suehring
[1960]	60	! Separate humidity and passive scalar
	61	! Increase dimension for mean_inflow_profiles
	62	! Remove inadvertent write-statement
	63	! Bugfix, large-scale forcing is still not implemented for passive scalars
[1919]	64	!
[1958]	65	! 1957 2016-07-07 10:43:48Z suehring
	66	! flight module added
	67	!
[1921]	68	! 1920 2016-05-30 10:50:15Z suehring
	69	! Initialize us with very small number to avoid segmentation fault during
	70	! calculation of Obukhov length
	71	!
[1919]	72	! 1918 2016-05-27 14:35:57Z raasch
	73	! intermediate_timestep_count is set 0 instead 1 for first call of pres,
	74	! bugfix: initialization of local sum arrays are moved to the beginning of the
	75	! routine because otherwise results from pres are overwritten
	76	!
[1917]	77	! 1914 2016-05-26 14:44:07Z witha
	78	! Added initialization of the wind turbine model
	79	!
[1879]	80	! 1878 2016-04-19 12:30:36Z hellstea
	81	! The zeroth element of weight_pres removed as unnecessary
	82	!
[1851]	83	! 1849 2016-04-08 11:33:18Z hoffmann
[1849]	84	! Adapted for modularization of microphysics.
	85	! precipitation_amount, precipitation_rate, prr moved to arrays_3d.
[1852]	86	! Initialization of nc_1d, nr_1d, pt_1d, qc_1d, qr_1d, q_1d moved to
[1849]	87	! microphysics_init.
	88	!
[1846]	89	! 1845 2016-04-08 08:29:13Z raasch
	90	! nzb_2d replaced by nzb_u\|v_inner
[1914]	91	!
[1834]	92	! 1833 2016-04-07 14:23:03Z raasch
	93	! initialization of spectra quantities moved to spectra_mod
	94	!
[1832]	95	! 1831 2016-04-07 13:15:51Z hoffmann
	96	! turbulence renamed collision_turbulence
	97	!
[1827]	98	! 1826 2016-04-07 12:01:39Z maronga
	99	! Renamed radiation calls.
	100	! Renamed canopy model calls.
	101	!
[1823]	102	! 1822 2016-04-07 07:49:42Z hoffmann
	103	! icloud_scheme replaced by microphysics_*
[1914]	104	!
[1818]	105	! 1817 2016-04-06 15:44:20Z maronga
	106	! Renamed lsm calls.
	107	!
[1816]	108	! 1815 2016-04-06 13:49:59Z raasch
	109	! zero-settings for velocities inside topography re-activated (was deactivated
	110	! in r1762)
	111	!
[1789]	112	! 1788 2016-03-10 11:01:04Z maronga
	113	! Added z0q.
	114	! Syntax layout improved.
	115	!
[1784]	116	! 1783 2016-03-06 18:36:17Z raasch
	117	! netcdf module name changed + related changes
	118	!
[1765]	119	! 1764 2016-02-28 12:45:19Z raasch
	120	! bugfix: increase size of volume_flow_area_l and volume_flow_initial_l by 1
	121	!
[1763]	122	! 1762 2016-02-25 12:31:13Z hellstea
	123	! Introduction of nested domain feature
	124	!
[1739]	125	! 1738 2015-12-18 13:56:05Z raasch
	126	! calculate mean surface level height for each statistic region
	127	!
[1735]	128	! 1734 2015-12-02 12:17:12Z raasch
	129	! no initial disturbances in case that the disturbance energy limit has been
	130	! set zero
	131	!
[1708]	132	! 1707 2015-11-02 15:24:52Z maronga
	133	! Bugfix: transfer of Richardson number from 1D model to Obukhov length caused
	134	! devision by zero in neutral stratification
	135	!
[1692]	136	! 1691 2015-10-26 16:17:44Z maronga
	137	! Call to init_surface_layer added. rif is replaced by ol and zeta.
	138	!
[1683]	139	! 1682 2015-10-07 23:56:08Z knoop
	140	! Code annotations made doxygen readable
	141	!
[1616]	142	! 1615 2015-07-08 18:49:19Z suehring
	143	! Enable turbulent inflow for passive_scalar and humidity
	144	!
[1586]	145	! 1585 2015-04-30 07:05:52Z maronga
	146	! Initialization of radiation code is now done after LSM initializtion
	147	!
[1576]	148	! 1575 2015-03-27 09:56:27Z raasch
	149	! adjustments for psolver-queries
	150	!
[1552]	151	! 1551 2015-03-03 14:18:16Z maronga
[1817]	152	! Allocation of land surface arrays is now done in the subroutine lsm_init_arrays,
[1552]	153	! which is part of land_surface_model.
	154	!
[1508]	155	! 1507 2014-12-10 12:14:18Z suehring
	156	! Bugfix: set horizontal velocity components to zero inside topography
	157	!
[1497]	158	! 1496 2014-12-02 17:25:50Z maronga
	159	! Added initialization of the land surface and radiation schemes
	160	!
[1485]	161	! 1484 2014-10-21 10:53:05Z kanani
[1484]	162	! Changes due to new module structure of the plant canopy model:
[1508]	163	! canopy-related initialization (e.g. lad and canopy_heat_flux) moved to new
	164	! subroutine init_plant_canopy within the module plant_canopy_model_mod,
	165	! call of subroutine init_plant_canopy added.
[1341]	166	!
[1432]	167	! 1431 2014-07-15 14:47:17Z suehring
	168	! var_d added, in order to normalize spectra.
	169	!
[1430]	170	! 1429 2014-07-15 12:53:45Z knoop
	171	! Ensemble run capability added to parallel random number generator
	172	!
[1412]	173	! 1411 2014-05-16 18:01:51Z suehring
	174	! Initial horizontal velocity profiles were not set to zero at the first vertical
	175	! grid level in case of non-cyclic lateral boundary conditions.
	176	!
[1407]	177	! 1406 2014-05-16 13:47:01Z raasch
	178	! bugfix: setting of initial velocities at k=1 to zero not in case of a
	179	! no-slip boundary condition for uv
	180	!
[1403]	181	! 1402 2014-05-09 14:25:13Z raasch
	182	! location messages modified
	183	!
[1401]	184	! 1400 2014-05-09 14:03:54Z knoop
	185	! Parallel random number generator added
	186	!
[1385]	187	! 1384 2014-05-02 14:31:06Z raasch
	188	! location messages added
	189	!
[1362]	190	! 1361 2014-04-16 15:17:48Z hoffmann
	191	! tend_* removed
	192	! Bugfix: w_subs is not allocated anymore if it is already allocated
	193	!
[1360]	194	! 1359 2014-04-11 17:15:14Z hoffmann
	195	! module lpm_init_mod added to use statements, because lpm_init has become a
	196	! module
	197	!
[1354]	198	! 1353 2014-04-08 15:21:23Z heinze
	199	! REAL constants provided with KIND-attribute
	200	!
[1341]	201	! 1340 2014-03-25 19:45:13Z kanani
	202	! REAL constants defined as wp-kind
	203	!
[1323]	204	! 1322 2014-03-20 16:38:49Z raasch
	205	! REAL constants defined as wp-kind
	206	! module interfaces removed
	207	!
[1321]	208	! 1320 2014-03-20 08:40:49Z raasch
	209	! ONLY-attribute added to USE-statements,
	210	! kind-parameters added to all INTEGER and REAL declaration statements,
	211	! kinds are defined in new module kinds,
	212	! revision history before 2012 removed,
	213	! comment fields (!:) to be used for variable explanations added to
	214	! all variable declaration statements
	215	!
[1317]	216	! 1316 2014-03-17 07:44:59Z heinze
	217	! Bugfix: allocation of w_subs
	218	!
[1300]	219	! 1299 2014-03-06 13:15:21Z heinze
	220	! Allocate w_subs due to extension of large scale subsidence in combination
	221	! with large scale forcing data (LSF_DATA)
	222	!
[1242]	223	! 1241 2013-10-30 11:36:58Z heinze
	224	! Overwrite initial profiles in case of nudging
	225	! Inititialize shf and qsws in case of large_scale_forcing
	226	!
[1222]	227	! 1221 2013-09-10 08:59:13Z raasch
	228	! +rflags_s_inner in copyin statement, use copyin for most arrays instead of
	229	! copy
	230	!
[1213]	231	! 1212 2013-08-15 08:46:27Z raasch
	232	! array tri is allocated and included in data copy statement
	233	!
[1196]	234	! 1195 2013-07-01 12:27:57Z heinze
	235	! Bugfix: move allocation of ref_state to parin.f90 and read_var_list.f90
	236	!
[1182]	237	! 1179 2013-06-14 05:57:58Z raasch
	238	! allocate and set ref_state to be used in buoyancy terms
	239	!
[1172]	240	! 1171 2013-05-30 11:27:45Z raasch
	241	! diss array is allocated with full size if accelerator boards are used
	242	!
[1160]	243	! 1159 2013-05-21 11:58:22Z fricke
	244	! -bc_lr_dirneu, bc_lr_neudir, bc_ns_dirneu, bc_ns_neudir
	245	!
[1154]	246	! 1153 2013-05-10 14:33:08Z raasch
	247	! diss array is allocated with dummy elements even if it is not needed
[1171]	248	! (required by PGI 13.4 / CUDA 5.0)
[1154]	249	!
[1116]	250	! 1115 2013-03-26 18:16:16Z hoffmann
	251	! unused variables removed
	252	!
[1114]	253	! 1113 2013-03-10 02:48:14Z raasch
	254	! openACC directive modified
	255	!
[1112]	256	! 1111 2013-03-08 23:54:10Z raasch
	257	! openACC directives added for pres
	258	! array diss allocated only if required
	259	!
[1093]	260	! 1092 2013-02-02 11:24:22Z raasch
	261	! unused variables removed
	262	!
[1066]	263	! 1065 2012-11-22 17:42:36Z hoffmann
	264	! allocation of diss (dissipation rate) in case of turbulence = .TRUE. added
	265	!
[1054]	266	! 1053 2012-11-13 17:11:03Z hoffmann
[1053]	267	! allocation and initialisation of necessary data arrays for the two-moment
	268	! cloud physics scheme the two new prognostic equations (nr, qr):
	269	! +dr, lambda_r, mu_r, sed_, xr, s, sws, swst, , _p, t_m, _1, _2, _3,
	270	! +tend_*, prr
[979]	271	!
[1037]	272	! 1036 2012-10-22 13:43:42Z raasch
	273	! code put under GPL (PALM 3.9)
	274	!
[1033]	275	! 1032 2012-10-21 13:03:21Z letzel
	276	! save memory by not allocating pt_2 in case of neutral = .T.
	277	!
[1026]	278	! 1025 2012-10-07 16:04:41Z letzel
	279	! bugfix: swap indices of mask for ghost boundaries
	280	!
[1017]	281	! 1015 2012-09-27 09:23:24Z raasch
	282	! mask is set to zero for ghost boundaries
	283	!
[1011]	284	! 1010 2012-09-20 07:59:54Z raasch
	285	! cpp switch __nopointer added for pointer free version
	286	!
[1004]	287	! 1003 2012-09-14 14:35:53Z raasch
	288	! nxra,nyna, nzta replaced ny nxr, nyn, nzt
	289	!
[1002]	290	! 1001 2012-09-13 14:08:46Z raasch
	291	! all actions concerning leapfrog scheme removed
	292	!
[997]	293	! 996 2012-09-07 10:41:47Z raasch
	294	! little reformatting
	295	!
[979]	296	! 978 2012-08-09 08:28:32Z fricke
[978]	297	! outflow damping layer removed
	298	! roughness length for scalar quantites z0h added
	299	! damping zone for the potential temperatur in case of non-cyclic lateral
	300	! boundaries added
	301	! initialization of ptdf_x, ptdf_y
	302	! initialization of c_u_m, c_u_m_l, c_v_m, c_v_m_l, c_w_m, c_w_m_l
[708]	303	!
[850]	304	! 849 2012-03-15 10:35:09Z raasch
	305	! init_particles renamed lpm_init
	306	!
[826]	307	! 825 2012-02-19 03:03:44Z raasch
	308	! wang_collision_kernel renamed wang_kernel
	309	!
[1]	310	! Revision 1.1 1998/03/09 16:22:22 raasch
	311	! Initial revision
	312	!
	313	!
	314	! Description:
	315	! ------------
[1682]	316	!> Allocation of arrays and initialization of the 3D model via
	317	!> a) pre-run the 1D model
	318	!> or
	319	!> b) pre-set constant linear profiles
	320	!> or
	321	!> c) read values of a previous run
[1]	322	!------------------------------------------------------------------------------!
[1682]	323	SUBROUTINE init_3d_model
	324
[1]	325
[667]	326	USE advec_ws
[1320]	327
[1]	328	USE arrays_3d
[1849]	329
[2037]	330	USE cloud_parameters, &
	331	ONLY: cp, l_v, r_d
	332
[1320]	333	USE constants, &
	334	ONLY: pi
	335
[1]	336	USE control_parameters
[1320]	337
[1957]	338	USE flight_mod, &
	339	ONLY: flight_init
	340
[1320]	341	USE grid_variables, &
[2037]	342	ONLY: dx, dy, ddx2_mg, ddy2_mg
[1320]	343
[1]	344	USE indices
[1359]	345
[1429]	346	USE lpm_init_mod, &
[1359]	347	ONLY: lpm_init
[1320]	348
	349	USE kinds
[1496]	350
	351	USE land_surface_model_mod, &
[2232]	352	ONLY: lsm_init, lsm_init_arrays
[1496]	353
[1241]	354	USE ls_forcing_mod
[1849]	355
	356	USE microphysics_mod, &
	357	ONLY: collision_turbulence, microphysics_init
	358
[1320]	359	USE model_1d, &
	360	ONLY: e1d, kh1d, km1d, l1d, rif1d, u1d, us1d, usws1d, v1d, vsws1d
	361
[1783]	362	USE netcdf_interface, &
	363	ONLY: dots_max, dots_num
[1320]	364
	365	USE particle_attributes, &
	366	ONLY: particle_advection, use_sgs_for_particles, wang_kernel
	367
[1]	368	USE pegrid
[1320]	369
[1484]	370	USE plant_canopy_model_mod, &
[1826]	371	ONLY: pcm_init, plant_canopy
[1496]	372
	373	USE radiation_model_mod, &
[1826]	374	ONLY: radiation_init, radiation
[1484]	375
[1320]	376	USE random_function_mod
	377
[1400]	378	USE random_generator_parallel, &
[2172]	379	ONLY: init_parallel_random_generator
[1400]	380
[1320]	381	USE statistics, &
[1738]	382	ONLY: hom, hom_sum, mean_surface_level_height, pr_palm, rmask, &
[1833]	383	statistic_regions, sums, sums_divnew_l, sums_divold_l, sums_l, &
	384	sums_l_l, sums_up_fraction_l, sums_wsts_bc_l, ts_value, &
	385	weight_pres, weight_substep
[1691]	386
	387	USE surface_layer_fluxes_mod, &
	388	ONLY: init_surface_layer_fluxes
[2232]	389
	390	USE surface_mod, &
	391	ONLY : init_surface_arrays, init_surfaces, surf_def_h, surf_lsm_h, &
	392	surf_usm_h
[1691]	393
[2007]	394	USE transpose_indices
[1]	395
[2007]	396	USE urban_surface_mod, &
[2011]	397	ONLY: usm_init_urban_surface
[2007]	398
[1914]	399	USE wind_turbine_model_mod, &
	400	ONLY: wtm_init, wtm_init_arrays, wind_turbine
	401
[1]	402	IMPLICIT NONE
	403
[1682]	404	INTEGER(iwp) :: i !<
	405	INTEGER(iwp) :: ind_array(1) !<
	406	INTEGER(iwp) :: j !<
	407	INTEGER(iwp) :: k !<
[2232]	408	INTEGER(iwp) :: k_surf !< surface level index
	409	INTEGER(iwp) :: m !< index of surface element in surface data type
	410	INTEGER(iwp) :: sr !< index of statistic region
[1]	411
[1682]	412	INTEGER(iwp), DIMENSION(:), ALLOCATABLE :: ngp_2dh_l !<
[1]	413
[1682]	414	INTEGER(iwp), DIMENSION(:,:), ALLOCATABLE :: ngp_2dh_outer_l !<
	415	INTEGER(iwp), DIMENSION(:,:), ALLOCATABLE :: ngp_2dh_s_inner_l !<
[1]	416
[2037]	417	REAL(wp) :: t_surface !< air temperature at the surface
	418
	419	REAL(wp), DIMENSION(:), ALLOCATABLE :: p_hydrostatic !< hydrostatic pressure
	420
	421	INTEGER(iwp) :: l !< loop variable
	422	INTEGER(iwp) :: nzt_l !< index of top PE boundary for multigrid level
	423	REAL(wp) :: dx_l !< grid spacing along x on different multigrid level
	424	REAL(wp) :: dy_l !< grid spacing along y on different multigrid level
	425
[1764]	426	REAL(wp), DIMENSION(1:3) :: volume_flow_area_l !<
	427	REAL(wp), DIMENSION(1:3) :: volume_flow_initial_l !<
[1]	428
[1738]	429	REAL(wp), DIMENSION(:), ALLOCATABLE :: mean_surface_level_height_l !<
[1682]	430	REAL(wp), DIMENSION(:), ALLOCATABLE :: ngp_3d_inner_l !<
	431	REAL(wp), DIMENSION(:), ALLOCATABLE :: ngp_3d_inner_tmp !<
[1]	432
[485]	433
[1402]	434	CALL location_message( 'allocating arrays', .FALSE. )
[1]	435	!
	436	!-- Allocate arrays
[1788]	437	ALLOCATE( mean_surface_level_height(0:statistic_regions), &
	438	mean_surface_level_height_l(0:statistic_regions), &
	439	ngp_2dh(0:statistic_regions), ngp_2dh_l(0:statistic_regions), &
	440	ngp_3d(0:statistic_regions), &
	441	ngp_3d_inner(0:statistic_regions), &
	442	ngp_3d_inner_l(0:statistic_regions), &
	443	ngp_3d_inner_tmp(0:statistic_regions), &
	444	sums_divnew_l(0:statistic_regions), &
[1]	445	sums_divold_l(0:statistic_regions) )
[1195]	446	ALLOCATE( dp_smooth_factor(nzb:nzt), rdf(nzb+1:nzt), rdf_sc(nzb+1:nzt) )
[1788]	447	ALLOCATE( ngp_2dh_outer(nzb:nzt+1,0:statistic_regions), &
	448	ngp_2dh_outer_l(nzb:nzt+1,0:statistic_regions), &
	449	ngp_2dh_s_inner(nzb:nzt+1,0:statistic_regions), &
	450	ngp_2dh_s_inner_l(nzb:nzt+1,0:statistic_regions), &
	451	rmask(nysg:nyng,nxlg:nxrg,0:statistic_regions), &
	452	sums(nzb:nzt+1,pr_palm+max_pr_user), &
	453	sums_l(nzb:nzt+1,pr_palm+max_pr_user,0:threads_per_task-1), &
	454	sums_l_l(nzb:nzt+1,0:statistic_regions,0:threads_per_task-1), &
	455	sums_up_fraction_l(10,3,0:statistic_regions), &
	456	sums_wsts_bc_l(nzb:nzt+1,0:statistic_regions), &
[394]	457	ts_value(dots_max,0:statistic_regions) )
[978]	458	ALLOCATE( ptdf_x(nxlg:nxrg), ptdf_y(nysg:nyng) )
[1]	459
[1788]	460	ALLOCATE( d(nzb+1:nzt,nys:nyn,nxl:nxr), &
	461	kh(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	462	km(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	463	p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
[1010]	464	tend(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	465
	466	#if defined( __nopointer )
[1788]	467	ALLOCATE( e(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	468	e_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	469	pt(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	470	pt_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	471	u(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	472	u_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	473	v(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	474	v_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	475	w(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	476	w_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	477	te_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	478	tpt_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	479	tu_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	480	tv_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
[1010]	481	tw_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	482	#else
[1788]	483	ALLOCATE( e_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	484	e_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	485	e_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	486	pt_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	487	pt_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	488	u_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	489	u_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	490	u_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	491	v_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	492	v_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	493	v_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	494	w_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	495	w_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
[667]	496	w_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1788]	497	IF ( .NOT. neutral ) THEN
[1032]	498	ALLOCATE( pt_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	499	ENDIF
[1010]	500	#endif
	501
[673]	502	!
[707]	503	!-- Following array is required for perturbation pressure within the iterative
	504	!-- pressure solvers. For the multistep schemes (Runge-Kutta), array p holds
	505	!-- the weighted average of the substeps and cannot be used in the Poisson
	506	!-- solver.
	507	IF ( psolver == 'sor' ) THEN
	508	ALLOCATE( p_loc(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1575]	509	ELSEIF ( psolver(1:9) == 'multigrid' ) THEN
[707]	510	!
	511	!-- For performance reasons, multigrid is using one ghost layer only
	512	ALLOCATE( p_loc(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1) )
[673]	513	ENDIF
[1]	514
[1111]	515	!
	516	!-- Array for storing constant coeffficients of the tridiagonal solver
	517	IF ( psolver == 'poisfft' ) THEN
[1212]	518	ALLOCATE( tri(nxl_z:nxr_z,nys_z:nyn_z,0:nz-1,2) )
[1111]	519	ALLOCATE( tric(nxl_z:nxr_z,nys_z:nyn_z,0:nz-1) )
	520	ENDIF
	521
[1960]	522	IF ( humidity ) THEN
[1]	523	!
[1960]	524	!-- 3D-humidity
[1010]	525	#if defined( __nopointer )
[1788]	526	ALLOCATE( q(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	527	q_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
[1010]	528	tq_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	529	#else
[1788]	530	ALLOCATE( q_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	531	q_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
[667]	532	q_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1010]	533	#endif
[1]	534
	535	!
[1960]	536	!-- 3D-arrays needed for humidity
[75]	537	IF ( humidity ) THEN
[1010]	538	#if defined( __nopointer )
	539	ALLOCATE( vpt(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	540	#else
[667]	541	ALLOCATE( vpt_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1010]	542	#endif
[1]	543
[1788]	544	IF ( cloud_physics ) THEN
[1053]	545
[1]	546	!
	547	!-- Liquid water content
[1010]	548	#if defined( __nopointer )
	549	ALLOCATE ( ql(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	550	#else
[667]	551	ALLOCATE ( ql_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1010]	552	#endif
[72]	553	!
	554	!-- Precipitation amount and rate (only needed if output is switched)
[1788]	555	ALLOCATE( precipitation_amount(nysg:nyng,nxlg:nxrg), &
[667]	556	precipitation_rate(nysg:nyng,nxlg:nxrg) )
[1053]	557
	558	!
[1822]	559	!-- 3D-cloud water content
[1053]	560	#if defined( __nopointer )
[1822]	561	ALLOCATE( qc(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1053]	562	#else
[1822]	563	ALLOCATE( qc_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1053]	564	#endif
[1822]	565	!
	566	!-- 3d-precipitation rate
	567	ALLOCATE( prr(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1115]	568
[1822]	569	IF ( microphysics_seifert ) THEN
[1053]	570	!
[1822]	571	!-- 3D-rain water content, rain drop concentration arrays
[1115]	572	#if defined( __nopointer )
[1822]	573	ALLOCATE( nr(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	574	nr_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	575	qr(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	576	qr_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	577	tnr_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	578	tqr_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1115]	579	#else
[1822]	580	ALLOCATE( nr_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	581	nr_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	582	nr_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	583	qr_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	584	qr_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	585	qr_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1115]	586	#endif
[1822]	587	ENDIF
[1053]	588
[1]	589	ENDIF
	590
	591	IF ( cloud_droplets ) THEN
	592	!
[1010]	593	!-- Liquid water content, change in liquid water content
	594	#if defined( __nopointer )
[1788]	595	ALLOCATE ( ql(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
[1010]	596	ql_c(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	597	#else
[1788]	598	ALLOCATE ( ql_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
[1010]	599	ql_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	600	#endif
	601	!
	602	!-- Real volume of particles (with weighting), volume of particles
[1788]	603	ALLOCATE ( ql_v(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
[667]	604	ql_vp(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1]	605	ENDIF
	606
	607	ENDIF
	608
	609	ENDIF
[1960]	610
	611
	612	IF ( passive_scalar ) THEN
[1]	613
[1960]	614	!
	615	!-- 3D scalar arrays
	616	#if defined( __nopointer )
	617	ALLOCATE( s(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	618	s_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	619	ts_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	620	#else
	621	ALLOCATE( s_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	622	s_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	623	s_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	624	#endif
	625	ENDIF
	626
[94]	627	IF ( ocean ) THEN
[1010]	628	#if defined( __nopointer )
[1788]	629	ALLOCATE( prho(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
[2031]	630	rho_ocean(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
[1788]	631	sa(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	632	sa_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
[1010]	633	tsa_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	634	#else
[1788]	635	ALLOCATE( prho_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	636	rho_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	637	sa_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	638	sa_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
[667]	639	sa_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[388]	640	prho => prho_1
[2031]	641	rho_ocean => rho_1 ! routines calc_mean_profile and diffusion_e require
[388]	642	! density to be apointer
[1010]	643	#endif
[94]	644	ENDIF
	645
[1]	646	!
[2037]	647	!-- Allocation of anelastic and Boussinesq approximation specific arrays
	648	ALLOCATE( p_hydrostatic(nzb:nzt+1) )
	649	ALLOCATE( rho_air(nzb:nzt+1) )
	650	ALLOCATE( rho_air_zw(nzb:nzt+1) )
	651	ALLOCATE( drho_air(nzb:nzt+1) )
	652	ALLOCATE( drho_air_zw(nzb:nzt+1) )
	653
	654	!
	655	!-- Density profile calculation for anelastic approximation
	656	IF ( TRIM( approximation ) == 'anelastic' ) THEN
	657	t_surface = pt_surface * ( surface_pressure / 1000.0_wp )**( r_d / cp )
	658	DO k = nzb, nzt+1
	659	p_hydrostatic(k) = surface_pressure * 100.0_wp * &
	660	( 1 - ( g * zu(k) ) / ( cp * t_surface ) &
	661	)**( cp / r_d )
	662	rho_air(k) = ( p_hydrostatic(k) * &
	663	( 100000.0_wp / p_hydrostatic(k) &
	664	)**( r_d / cp ) &
	665	) / ( r_d * pt_init(k) )
	666	ENDDO
	667	DO k = nzb, nzt
	668	rho_air_zw(k) = 0.5_wp * ( rho_air(k) + rho_air(k+1) )
	669	ENDDO
	670	rho_air_zw(nzt+1) = rho_air_zw(nzt) &
	671	+ 2.0_wp * ( rho_air(nzt+1) - rho_air_zw(nzt) )
	672	ELSE
	673	rho_air = 1.0_wp
	674	rho_air_zw = 1.0_wp
	675	ENDIF
	676
	677	!-- compute the inverse density array in order to avoid expencive divisions
	678	drho_air = 1.0_wp / rho_air
	679	drho_air_zw = 1.0_wp / rho_air_zw
	680
	681	!
	682	!-- Allocation of flux conversion arrays
	683	ALLOCATE( heatflux_input_conversion(nzb:nzt+1) )
	684	ALLOCATE( waterflux_input_conversion(nzb:nzt+1) )
	685	ALLOCATE( momentumflux_input_conversion(nzb:nzt+1) )
	686	ALLOCATE( heatflux_output_conversion(nzb:nzt+1) )
	687	ALLOCATE( waterflux_output_conversion(nzb:nzt+1) )
	688	ALLOCATE( momentumflux_output_conversion(nzb:nzt+1) )
	689
	690	!
	691	!-- calculate flux conversion factors according to approximation and in-/output mode
	692	DO k = nzb, nzt+1
	693
	694	IF ( TRIM( flux_input_mode ) == 'kinematic' ) THEN
	695	heatflux_input_conversion(k) = rho_air_zw(k)
	696	waterflux_input_conversion(k) = rho_air_zw(k)
	697	momentumflux_input_conversion(k) = rho_air_zw(k)
	698	ELSEIF ( TRIM( flux_input_mode ) == 'dynamic' ) THEN
	699	heatflux_input_conversion(k) = 1.0_wp / cp
	700	waterflux_input_conversion(k) = 1.0_wp / l_v
	701	momentumflux_input_conversion(k) = 1.0_wp
	702	ENDIF
	703
	704	IF ( TRIM( flux_output_mode ) == 'kinematic' ) THEN
	705	heatflux_output_conversion(k) = drho_air_zw(k)
	706	waterflux_output_conversion(k) = drho_air_zw(k)
	707	momentumflux_output_conversion(k) = drho_air_zw(k)
	708	ELSEIF ( TRIM( flux_output_mode ) == 'dynamic' ) THEN
	709	heatflux_output_conversion(k) = cp
	710	waterflux_output_conversion(k) = l_v
	711	momentumflux_output_conversion(k) = 1.0_wp
	712	ENDIF
	713
	714	IF ( .NOT. humidity ) THEN
	715	waterflux_input_conversion(k) = 1.0_wp
	716	waterflux_output_conversion(k) = 1.0_wp
	717	ENDIF
	718
	719	ENDDO
	720
	721	!
	722	!-- In case of multigrid method, compute grid lengths and grid factors for the
	723	!-- grid levels with respective density on each grid
	724	IF ( psolver(1:9) == 'multigrid' ) THEN
	725
	726	ALLOCATE( ddx2_mg(maximum_grid_level) )
	727	ALLOCATE( ddy2_mg(maximum_grid_level) )
	728	ALLOCATE( dzu_mg(nzb+1:nzt+1,maximum_grid_level) )
	729	ALLOCATE( dzw_mg(nzb+1:nzt+1,maximum_grid_level) )
	730	ALLOCATE( f1_mg(nzb+1:nzt,maximum_grid_level) )
	731	ALLOCATE( f2_mg(nzb+1:nzt,maximum_grid_level) )
	732	ALLOCATE( f3_mg(nzb+1:nzt,maximum_grid_level) )
	733	ALLOCATE( rho_air_mg(nzb:nzt+1,maximum_grid_level) )
	734	ALLOCATE( rho_air_zw_mg(nzb:nzt+1,maximum_grid_level) )
	735
	736	dzu_mg(:,maximum_grid_level) = dzu
	737	rho_air_mg(:,maximum_grid_level) = rho_air
	738	!
	739	!-- Next line to ensure an equally spaced grid.
	740	dzu_mg(1,maximum_grid_level) = dzu(2)
	741	rho_air_mg(nzb,maximum_grid_level) = rho_air(nzb) + &
	742	(rho_air(nzb) - rho_air(nzb+1))
	743
	744	dzw_mg(:,maximum_grid_level) = dzw
	745	rho_air_zw_mg(:,maximum_grid_level) = rho_air_zw
	746	nzt_l = nzt
	747	DO l = maximum_grid_level-1, 1, -1
	748	dzu_mg(nzb+1,l) = 2.0_wp * dzu_mg(nzb+1,l+1)
	749	dzw_mg(nzb+1,l) = 2.0_wp * dzw_mg(nzb+1,l+1)
	750	rho_air_mg(nzb,l) = rho_air_mg(nzb,l+1) + (rho_air_mg(nzb,l+1) - rho_air_mg(nzb+1,l+1))
	751	rho_air_zw_mg(nzb,l) = rho_air_zw_mg(nzb,l+1) + (rho_air_zw_mg(nzb,l+1) - rho_air_zw_mg(nzb+1,l+1))
	752	rho_air_mg(nzb+1,l) = rho_air_mg(nzb+1,l+1)
	753	rho_air_zw_mg(nzb+1,l) = rho_air_zw_mg(nzb+1,l+1)
	754	nzt_l = nzt_l / 2
	755	DO k = 2, nzt_l+1
	756	dzu_mg(k,l) = dzu_mg(2k-2,l+1) + dzu_mg(2k-1,l+1)
	757	dzw_mg(k,l) = dzw_mg(2k-2,l+1) + dzw_mg(2k-1,l+1)
	758	rho_air_mg(k,l) = rho_air_mg(2*k-1,l+1)
	759	rho_air_zw_mg(k,l) = rho_air_zw_mg(2*k-1,l+1)
	760	ENDDO
	761	ENDDO
	762
	763	nzt_l = nzt
	764	dx_l = dx
	765	dy_l = dy
	766	DO l = maximum_grid_level, 1, -1
	767	ddx2_mg(l) = 1.0_wp / dx_l**2
	768	ddy2_mg(l) = 1.0_wp / dy_l**2
	769	DO k = nzb+1, nzt_l
	770	f2_mg(k,l) = rho_air_zw_mg(k,l) / ( dzu_mg(k+1,l) * dzw_mg(k,l) )
	771	f3_mg(k,l) = rho_air_zw_mg(k-1,l) / ( dzu_mg(k,l) * dzw_mg(k,l) )
	772	f1_mg(k,l) = 2.0_wp * ( ddx2_mg(l) + ddy2_mg(l) ) &
	773	* rho_air_mg(k,l) + f2_mg(k,l) + f3_mg(k,l)
	774	ENDDO
	775	nzt_l = nzt_l / 2
	776	dx_l = dx_l * 2.0_wp
	777	dy_l = dy_l * 2.0_wp
	778	ENDDO
	779
	780	ENDIF
	781
	782	!
[1]	783	!-- 3D-array for storing the dissipation, needed for calculating the sgs
	784	!-- particle velocities
[2118]	785	IF ( use_sgs_for_particles .OR. wang_kernel .OR. collision_turbulence )&
	786	THEN
[1153]	787	ALLOCATE( diss(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1]	788	ENDIF
	789
	790	!
[1299]	791	!-- 1D-array for large scale subsidence velocity
[1361]	792	IF ( .NOT. ALLOCATED( w_subs ) ) THEN
	793	ALLOCATE ( w_subs(nzb:nzt+1) )
	794	w_subs = 0.0_wp
	795	ENDIF
[1299]	796
	797	!
[106]	798	!-- Arrays to store velocity data from t-dt and the phase speeds which
	799	!-- are needed for radiation boundary conditions
[73]	800	IF ( outflow_l ) THEN
[1788]	801	ALLOCATE( u_m_l(nzb:nzt+1,nysg:nyng,1:2), &
	802	v_m_l(nzb:nzt+1,nysg:nyng,0:1), &
[667]	803	w_m_l(nzb:nzt+1,nysg:nyng,0:1) )
[73]	804	ENDIF
	805	IF ( outflow_r ) THEN
[1788]	806	ALLOCATE( u_m_r(nzb:nzt+1,nysg:nyng,nx-1:nx), &
	807	v_m_r(nzb:nzt+1,nysg:nyng,nx-1:nx), &
[667]	808	w_m_r(nzb:nzt+1,nysg:nyng,nx-1:nx) )
[73]	809	ENDIF
[106]	810	IF ( outflow_l .OR. outflow_r ) THEN
[1788]	811	ALLOCATE( c_u(nzb:nzt+1,nysg:nyng), c_v(nzb:nzt+1,nysg:nyng), &
[667]	812	c_w(nzb:nzt+1,nysg:nyng) )
[106]	813	ENDIF
[73]	814	IF ( outflow_s ) THEN
[1788]	815	ALLOCATE( u_m_s(nzb:nzt+1,0:1,nxlg:nxrg), &
	816	v_m_s(nzb:nzt+1,1:2,nxlg:nxrg), &
[667]	817	w_m_s(nzb:nzt+1,0:1,nxlg:nxrg) )
[73]	818	ENDIF
	819	IF ( outflow_n ) THEN
[1788]	820	ALLOCATE( u_m_n(nzb:nzt+1,ny-1:ny,nxlg:nxrg), &
	821	v_m_n(nzb:nzt+1,ny-1:ny,nxlg:nxrg), &
[667]	822	w_m_n(nzb:nzt+1,ny-1:ny,nxlg:nxrg) )
[73]	823	ENDIF
[106]	824	IF ( outflow_s .OR. outflow_n ) THEN
[1788]	825	ALLOCATE( c_u(nzb:nzt+1,nxlg:nxrg), c_v(nzb:nzt+1,nxlg:nxrg), &
[667]	826	c_w(nzb:nzt+1,nxlg:nxrg) )
[106]	827	ENDIF
[996]	828	IF ( outflow_l .OR. outflow_r .OR. outflow_s .OR. outflow_n ) THEN
[978]	829	ALLOCATE( c_u_m_l(nzb:nzt+1), c_v_m_l(nzb:nzt+1), c_w_m_l(nzb:nzt+1) )
	830	ALLOCATE( c_u_m(nzb:nzt+1), c_v_m(nzb:nzt+1), c_w_m(nzb:nzt+1) )
	831	ENDIF
[73]	832
[978]	833
[1010]	834	#if ! defined( __nopointer )
[73]	835	!
[1]	836	!-- Initial assignment of the pointers
[1001]	837	e => e_1; e_p => e_2; te_m => e_3
[1032]	838	IF ( .NOT. neutral ) THEN
	839	pt => pt_1; pt_p => pt_2; tpt_m => pt_3
	840	ELSE
	841	pt => pt_1; pt_p => pt_1; tpt_m => pt_3
	842	ENDIF
[1001]	843	u => u_1; u_p => u_2; tu_m => u_3
	844	v => v_1; v_p => v_2; tv_m => v_3
	845	w => w_1; w_p => w_2; tw_m => w_3
[1]	846
[1960]	847	IF ( humidity ) THEN
[1001]	848	q => q_1; q_p => q_2; tq_m => q_3
[1053]	849	IF ( humidity ) THEN
	850	vpt => vpt_1
	851	IF ( cloud_physics ) THEN
	852	ql => ql_1
[1822]	853	qc => qc_1
	854	IF ( microphysics_seifert ) THEN
	855	qr => qr_1; qr_p => qr_2; tqr_m => qr_3
	856	nr => nr_1; nr_p => nr_2; tnr_m => nr_3
[1053]	857	ENDIF
	858	ENDIF
	859	ENDIF
[1001]	860	IF ( cloud_droplets ) THEN
	861	ql => ql_1
	862	ql_c => ql_2
[1]	863	ENDIF
[1001]	864	ENDIF
[1960]	865
	866	IF ( passive_scalar ) THEN
	867	s => s_1; s_p => s_2; ts_m => s_3
	868	ENDIF
[1]	869
[1001]	870	IF ( ocean ) THEN
	871	sa => sa_1; sa_p => sa_2; tsa_m => sa_3
	872	ENDIF
[1010]	873	#endif
[1]	874	!
[2232]	875	!-- Initialize wall arrays
	876	CALL init_surface_arrays
	877	!
[1551]	878	!-- Allocate land surface model arrays
	879	IF ( land_surface ) THEN
[1817]	880	CALL lsm_init_arrays
[1551]	881	ENDIF
	882
	883	!
[1914]	884	!-- Allocate wind turbine model arrays
	885	IF ( wind_turbine ) THEN
	886	CALL wtm_init_arrays
	887	ENDIF
[1957]	888
	889	!
	890	!-- Initialize virtual flight measurements
	891	IF ( virtual_flight ) THEN
	892	CALL flight_init
	893	ENDIF
[1914]	894
	895	!
[709]	896	!-- Allocate arrays containing the RK coefficient for calculation of
	897	!-- perturbation pressure and turbulent fluxes. At this point values are
	898	!-- set for pressure calculation during initialization (where no timestep
	899	!-- is done). Further below the values needed within the timestep scheme
	900	!-- will be set.
[1788]	901	ALLOCATE( weight_substep(1:intermediate_timestep_count_max), &
[1878]	902	weight_pres(1:intermediate_timestep_count_max) )
[1340]	903	weight_substep = 1.0_wp
	904	weight_pres = 1.0_wp
[1918]	905	intermediate_timestep_count = 0 ! needed when simulated_time = 0.0
[673]	906
[1402]	907	CALL location_message( 'finished', .TRUE. )
[1918]	908
[673]	909	!
[1918]	910	!-- Initialize local summation arrays for routine flow_statistics.
	911	!-- This is necessary because they may not yet have been initialized when they
	912	!-- are called from flow_statistics (or - depending on the chosen model run -
	913	!-- are never initialized)
	914	sums_divnew_l = 0.0_wp
	915	sums_divold_l = 0.0_wp
	916	sums_l_l = 0.0_wp
	917	sums_up_fraction_l = 0.0_wp
	918	sums_wsts_bc_l = 0.0_wp
	919
	920	!
[1]	921	!-- Initialize model variables
[1788]	922	IF ( TRIM( initializing_actions ) /= 'read_restart_data' .AND. &
[328]	923	TRIM( initializing_actions ) /= 'cyclic_fill' ) THEN
[1]	924	!
	925	!-- First model run of a possible job queue.
	926	!-- Initial profiles of the variables must be computes.
	927	IF ( INDEX( initializing_actions, 'set_1d-model_profiles' ) /= 0 ) THEN
[1384]	928
[1402]	929	CALL location_message( 'initializing with 1D model profiles', .FALSE. )
[1]	930	!
	931	!-- Use solutions of the 1D model as initial profiles,
	932	!-- start 1D model
	933	CALL init_1d_model
	934	!
	935	!-- Transfer initial profiles to the arrays of the 3D model
[667]	936	DO i = nxlg, nxrg
	937	DO j = nysg, nyng
[1]	938	e(:,j,i) = e1d
	939	kh(:,j,i) = kh1d
	940	km(:,j,i) = km1d
	941	pt(:,j,i) = pt_init
	942	u(:,j,i) = u1d
	943	v(:,j,i) = v1d
	944	ENDDO
	945	ENDDO
	946
[1960]	947	IF ( humidity ) THEN
[667]	948	DO i = nxlg, nxrg
	949	DO j = nysg, nyng
[1]	950	q(:,j,i) = q_init
	951	ENDDO
	952	ENDDO
[1822]	953	IF ( cloud_physics .AND. microphysics_seifert ) THEN
[1053]	954	DO i = nxlg, nxrg
	955	DO j = nysg, nyng
[1340]	956	qr(:,j,i) = 0.0_wp
	957	nr(:,j,i) = 0.0_wp
[1053]	958	ENDDO
	959	ENDDO
[1115]	960
[1053]	961	ENDIF
[1]	962	ENDIF
[1960]	963	IF ( passive_scalar ) THEN
	964	DO i = nxlg, nxrg
	965	DO j = nysg, nyng
	966	s(:,j,i) = s_init
	967	ENDDO
	968	ENDDO
	969	ENDIF
[1]	970
	971	IF ( .NOT. constant_diffusion ) THEN
[667]	972	DO i = nxlg, nxrg
	973	DO j = nysg, nyng
[1]	974	e(:,j,i) = e1d
	975	ENDDO
	976	ENDDO
	977	!
	978	!-- Store initial profiles for output purposes etc.
	979	hom(:,1,25,:) = SPREAD( l1d, 2, statistic_regions+1 )
	980
	981	ELSE
[1340]	982	e = 0.0_wp ! must be set, because used in
[1]	983	ENDIF
	984	!
[1762]	985	!-- Inside buildings set velocities back to zero
[1]	986	IF ( topography /= 'flat' ) THEN
[1762]	987	DO i = nxlg, nxrg
	988	DO j = nysg, nyng
[2232]	989	DO k = nzb, nzt
	990	u(k,j,i) = MERGE( u(k,j,i), 0.0_wp, &
	991	BTEST( wall_flags_0(k,j,i), 1 ) )
	992	v(k,j,i) = MERGE( v(k,j,i), 0.0_wp, &
	993	BTEST( wall_flags_0(k,j,i), 2 ) )
	994	ENDDO
[1]	995	ENDDO
	996	ENDDO
[667]	997
[1]	998	!
	999	!-- WARNING: The extra boundary conditions set after running the
	1000	!-- ------- 1D model impose an error on the divergence one layer
	1001	!-- below the topography; need to correct later
	1002	!-- ATTENTION: Provisional correction for Piacsek & Williams
	1003	!-- --------- advection scheme: keep u and v zero one layer below
	1004	!-- the topography.
[667]	1005	IF ( ibc_uv_b == 1 ) THEN
	1006	!
[1]	1007	!-- Neumann condition
	1008	DO i = nxl-1, nxr+1
	1009	DO j = nys-1, nyn+1
[2232]	1010	u(nzb,j,i) = u(nzb+1,j,i)
	1011	v(nzb,j,i) = v(nzb+1,j,i)
[1]	1012	ENDDO
	1013	ENDDO
	1014
	1015	ENDIF
	1016
	1017	ENDIF
	1018
[1402]	1019	CALL location_message( 'finished', .TRUE. )
[1384]	1020
[1788]	1021	ELSEIF ( INDEX(initializing_actions, 'set_constant_profiles') /= 0 ) &
[1]	1022	THEN
[1241]	1023
[1402]	1024	CALL location_message( 'initializing with constant profiles', .FALSE. )
[1]	1025	!
[1241]	1026	!-- Overwrite initial profiles in case of nudging
[1788]	1027	IF ( nudging ) THEN
[1241]	1028	pt_init = ptnudge(:,1)
	1029	u_init = unudge(:,1)
	1030	v_init = vnudge(:,1)
[1960]	1031	IF ( humidity ) THEN ! is passive_scalar correct???
[1241]	1032	q_init = qnudge(:,1)
	1033	ENDIF
	1034
[1788]	1035	WRITE( message_string, * ) 'Initial profiles of u, v and ', &
[1241]	1036	'scalars from NUDGING_DATA are used.'
	1037	CALL message( 'init_3d_model', 'PA0370', 0, 0, 0, 6, 0 )
	1038	ENDIF
	1039
	1040	!
[1]	1041	!-- Use constructed initial profiles (velocity constant with height,
	1042	!-- temperature profile with constant gradient)
[667]	1043	DO i = nxlg, nxrg
	1044	DO j = nysg, nyng
[1]	1045	pt(:,j,i) = pt_init
	1046	u(:,j,i) = u_init
	1047	v(:,j,i) = v_init
	1048	ENDDO
	1049	ENDDO
[75]	1050
[1]	1051	!
[292]	1052	!-- Set initial horizontal velocities at the lowest computational grid
	1053	!-- levels to zero in order to avoid too small time steps caused by the
	1054	!-- diffusion limit in the initial phase of a run (at k=1, dz/2 occurs
[1815]	1055	!-- in the limiting formula!).
	1056	IF ( ibc_uv_b /= 1 ) THEN
	1057	DO i = nxlg, nxrg
	1058	DO j = nysg, nyng
[2232]	1059	DO k = nzb, nzt
	1060	u(k,j,i) = MERGE( u(k,j,i), 0.0_wp, &
	1061	BTEST( wall_flags_0(k,j,i), 20 ) )
	1062	v(k,j,i) = MERGE( v(k,j,i), 0.0_wp, &
	1063	BTEST( wall_flags_0(k,j,i), 21 ) )
	1064	ENDDO
[1815]	1065	ENDDO
	1066	ENDDO
	1067	ENDIF
[1]	1068
[1960]	1069	IF ( humidity ) THEN
[667]	1070	DO i = nxlg, nxrg
	1071	DO j = nysg, nyng
[1]	1072	q(:,j,i) = q_init
	1073	ENDDO
	1074	ENDDO
[1822]	1075	IF ( cloud_physics .AND. microphysics_seifert ) THEN
[1115]	1076
[1822]	1077	DO i = nxlg, nxrg
	1078	DO j = nysg, nyng
	1079	qr(:,j,i) = 0.0_wp
	1080	nr(:,j,i) = 0.0_wp
[1053]	1081	ENDDO
[1822]	1082	ENDDO
[1115]	1083
[1053]	1084	ENDIF
[1]	1085	ENDIF
[1960]	1086
	1087	IF ( passive_scalar ) THEN
	1088	DO i = nxlg, nxrg
	1089	DO j = nysg, nyng
	1090	s(:,j,i) = s_init
	1091	ENDDO
	1092	ENDDO
	1093	ENDIF
[1]	1094
[94]	1095	IF ( ocean ) THEN
[667]	1096	DO i = nxlg, nxrg
	1097	DO j = nysg, nyng
[94]	1098	sa(:,j,i) = sa_init
	1099	ENDDO
	1100	ENDDO
	1101	ENDIF
[1]	1102
	1103	IF ( constant_diffusion ) THEN
	1104	km = km_constant
	1105	kh = km / prandtl_number
[1340]	1106	e = 0.0_wp
	1107	ELSEIF ( e_init > 0.0_wp ) THEN
[108]	1108	DO k = nzb+1, nzt
[1340]	1109	km(k,:,:) = 0.1_wp * l_grid(k) * SQRT( e_init )
[108]	1110	ENDDO
	1111	km(nzb,:,:) = km(nzb+1,:,:)
	1112	km(nzt+1,:,:) = km(nzt,:,:)
	1113	kh = km / prandtl_number
	1114	e = e_init
[1]	1115	ELSE
[108]	1116	IF ( .NOT. ocean ) THEN
[1340]	1117	kh = 0.01_wp ! there must exist an initial diffusion, because
	1118	km = 0.01_wp ! otherwise no TKE would be produced by the
[108]	1119	! production terms, as long as not yet
	1120	! e = (u/cm)*2 at k=nzb+1
	1121	ELSE
[1340]	1122	kh = 0.00001_wp
	1123	km = 0.00001_wp
[108]	1124	ENDIF
[1340]	1125	e = 0.0_wp
[1]	1126	ENDIF
[1920]	1127	!
[1]	1128	!-- Compute initial temperature field and other constants used in case
	1129	!-- of a sloping surface
	1130	IF ( sloping_surface ) CALL init_slope
	1131
[1402]	1132	CALL location_message( 'finished', .TRUE. )
[1384]	1133
[1788]	1134	ELSEIF ( INDEX(initializing_actions, 'by_user') /= 0 ) &
[46]	1135	THEN
[1384]	1136
[1402]	1137	CALL location_message( 'initializing by user', .FALSE. )
[46]	1138	!
	1139	!-- Initialization will completely be done by the user
	1140	CALL user_init_3d_model
	1141
[1402]	1142	CALL location_message( 'finished', .TRUE. )
[1384]	1143
[1]	1144	ENDIF
[1384]	1145
[1402]	1146	CALL location_message( 'initializing statistics, boundary conditions, etc.', &
	1147	.FALSE. )
[1384]	1148
[667]	1149	!
	1150	!-- Bottom boundary
	1151	IF ( ibc_uv_b == 0 .OR. ibc_uv_b == 2 ) THEN
[1340]	1152	u(nzb,:,:) = 0.0_wp
	1153	v(nzb,:,:) = 0.0_wp
[667]	1154	ENDIF
[1]	1155
	1156	!
[151]	1157	!-- Apply channel flow boundary condition
[132]	1158	IF ( TRIM( bc_uv_t ) == 'dirichlet_0' ) THEN
[1340]	1159	u(nzt+1,:,:) = 0.0_wp
	1160	v(nzt+1,:,:) = 0.0_wp
[132]	1161	ENDIF
	1162
	1163	!
[1]	1164	!-- Calculate virtual potential temperature
[1960]	1165	IF ( humidity ) vpt = pt * ( 1.0_wp + 0.61_wp * q )
[1]	1166
	1167	!
	1168	!-- Store initial profiles for output purposes etc.
	1169	hom(:,1,5,:) = SPREAD( u(:,nys,nxl), 2, statistic_regions+1 )
	1170	hom(:,1,6,:) = SPREAD( v(:,nys,nxl), 2, statistic_regions+1 )
[667]	1171	IF ( ibc_uv_b == 0 .OR. ibc_uv_b == 2) THEN
[1340]	1172	hom(nzb,1,5,:) = 0.0_wp
	1173	hom(nzb,1,6,:) = 0.0_wp
[1]	1174	ENDIF
	1175	hom(:,1,7,:) = SPREAD( pt(:,nys,nxl), 2, statistic_regions+1 )
	1176	hom(:,1,23,:) = SPREAD( km(:,nys,nxl), 2, statistic_regions+1 )
	1177	hom(:,1,24,:) = SPREAD( kh(:,nys,nxl), 2, statistic_regions+1 )
	1178
[97]	1179	IF ( ocean ) THEN
	1180	!
	1181	!-- Store initial salinity profile
	1182	hom(:,1,26,:) = SPREAD( sa(:,nys,nxl), 2, statistic_regions+1 )
	1183	ENDIF
[1]	1184
[75]	1185	IF ( humidity ) THEN
[1]	1186	!
	1187	!-- Store initial profile of total water content, virtual potential
	1188	!-- temperature
	1189	hom(:,1,26,:) = SPREAD( q(:,nys,nxl), 2, statistic_regions+1 )
	1190	hom(:,1,29,:) = SPREAD( vpt(:,nys,nxl), 2, statistic_regions+1 )
	1191	IF ( cloud_physics .OR. cloud_droplets ) THEN
	1192	!
	1193	!-- Store initial profile of specific humidity and potential
	1194	!-- temperature
	1195	hom(:,1,27,:) = SPREAD( q(:,nys,nxl), 2, statistic_regions+1 )
	1196	hom(:,1,28,:) = SPREAD( pt(:,nys,nxl), 2, statistic_regions+1 )
	1197	ENDIF
	1198	ENDIF
	1199
	1200	IF ( passive_scalar ) THEN
	1201	!
	1202	!-- Store initial scalar profile
[1960]	1203	hom(:,1,115,:) = SPREAD( s(:,nys,nxl), 2, statistic_regions+1 )
[1]	1204	ENDIF
	1205
	1206	!
[1400]	1207	!-- Initialize the random number generators (from numerical recipes)
	1208	CALL random_function_ini
[1429]	1209
[1400]	1210	IF ( random_generator == 'random-parallel' ) THEN
[2172]	1211	CALL init_parallel_random_generator(nx, ny, nys, nyn, nxl, nxr)
[1400]	1212	ENDIF
	1213	!
[1179]	1214	!-- Set the reference state to be used in the buoyancy terms (for ocean runs
	1215	!-- the reference state will be set (overwritten) in init_ocean)
	1216	IF ( use_single_reference_value ) THEN
[1788]	1217	IF ( .NOT. humidity ) THEN
[1179]	1218	ref_state(:) = pt_reference
	1219	ELSE
	1220	ref_state(:) = vpt_reference
	1221	ENDIF
	1222	ELSE
[1788]	1223	IF ( .NOT. humidity ) THEN
[1179]	1224	ref_state(:) = pt_init(:)
	1225	ELSE
	1226	ref_state(:) = vpt(:,nys,nxl)
	1227	ENDIF
	1228	ENDIF
[152]	1229
	1230	!
[707]	1231	!-- For the moment, vertical velocity is zero
[1340]	1232	w = 0.0_wp
[1]	1233
	1234	!
	1235	!-- Initialize array sums (must be defined in first call of pres)
[1340]	1236	sums = 0.0_wp
[1]	1237
	1238	!
[707]	1239	!-- In case of iterative solvers, p must get an initial value
[1575]	1240	IF ( psolver(1:9) == 'multigrid' .OR. psolver == 'sor' ) p = 0.0_wp
[707]	1241
	1242	!
[72]	1243	!-- Treating cloud physics, liquid water content and precipitation amount
	1244	!-- are zero at beginning of the simulation
	1245	IF ( cloud_physics ) THEN
[1340]	1246	ql = 0.0_wp
[1822]	1247	qc = 0.0_wp
	1248
	1249	precipitation_amount = 0.0_wp
[72]	1250	ENDIF
[673]	1251	!
[1]	1252	!-- Impose vortex with vertical axis on the initial velocity profile
	1253	IF ( INDEX( initializing_actions, 'initialize_vortex' ) /= 0 ) THEN
	1254	CALL init_rankine
	1255	ENDIF
	1256
	1257	!
	1258	!-- Impose temperature anomaly (advection test only)
	1259	IF ( INDEX( initializing_actions, 'initialize_ptanom' ) /= 0 ) THEN
	1260	CALL init_pt_anomaly
	1261	ENDIF
	1262
	1263	!
	1264	!-- If required, change the surface temperature at the start of the 3D run
[1340]	1265	IF ( pt_surface_initial_change /= 0.0_wp ) THEN
[1]	1266	pt(nzb,:,:) = pt(nzb,:,:) + pt_surface_initial_change
	1267	ENDIF
	1268
	1269	!
	1270	!-- If required, change the surface humidity/scalar at the start of the 3D
	1271	!-- run
[1960]	1272	IF ( humidity .AND. q_surface_initial_change /= 0.0_wp ) &
[1]	1273	q(nzb,:,:) = q(nzb,:,:) + q_surface_initial_change
[1960]	1274
	1275	IF ( passive_scalar .AND. s_surface_initial_change /= 0.0_wp ) &
	1276	s(nzb,:,:) = s(nzb,:,:) + s_surface_initial_change
	1277
[1]	1278
	1279	!
	1280	!-- Initialize old and new time levels.
[1340]	1281	te_m = 0.0_wp; tpt_m = 0.0_wp; tu_m = 0.0_wp; tv_m = 0.0_wp; tw_m = 0.0_wp
[1]	1282	e_p = e; pt_p = pt; u_p = u; v_p = v; w_p = w
	1283
[1960]	1284	IF ( humidity ) THEN
[1340]	1285	tq_m = 0.0_wp
[1]	1286	q_p = q
[1822]	1287	IF ( cloud_physics .AND. microphysics_seifert ) THEN
[1340]	1288	tqr_m = 0.0_wp
[1822]	1289	qr_p = qr
[1340]	1290	tnr_m = 0.0_wp
[1822]	1291	nr_p = nr
[1053]	1292	ENDIF
[1]	1293	ENDIF
[1960]	1294
	1295	IF ( passive_scalar ) THEN
	1296	ts_m = 0.0_wp
	1297	s_p = s
	1298	ENDIF
[1]	1299
[94]	1300	IF ( ocean ) THEN
[1340]	1301	tsa_m = 0.0_wp
[94]	1302	sa_p = sa
	1303	ENDIF
[667]	1304
[1402]	1305	CALL location_message( 'finished', .TRUE. )
[94]	1306
[1788]	1307	ELSEIF ( TRIM( initializing_actions ) == 'read_restart_data' .OR. &
[2232]	1308	TRIM( initializing_actions ) == 'cyclic_fill' ) &
[1]	1309	THEN
[1384]	1310
[1402]	1311	CALL location_message( 'initializing in case of restart / cyclic_fill', &
	1312	.FALSE. )
[1]	1313	!
[2232]	1314	!-- Initialize surface elements and its attributes, e.g. heat- and
	1315	!-- momentumfluxes, roughness, scaling parameters. As number of surface
	1316	!-- elements might be different between runs, e.g. in case of cyclic fill,
	1317	!-- and not all surface elements are read, surface elements need to be
	1318	!-- initialized before.
	1319	CALL init_surfaces
	1320	!
[767]	1321	!-- When reading data for cyclic fill of 3D prerun data files, read
	1322	!-- some of the global variables from the restart file which are required
	1323	!-- for initializing the inflow
[328]	1324	IF ( TRIM( initializing_actions ) == 'cyclic_fill' ) THEN
[559]	1325
[759]	1326	DO i = 0, io_blocks-1
	1327	IF ( i == io_group ) THEN
	1328	CALL read_parts_of_var_list
	1329	CALL close_file( 13 )
	1330	ENDIF
	1331	#if defined( __parallel )
	1332	CALL MPI_BARRIER( comm2d, ierr )
	1333	#endif
	1334	ENDDO
[328]	1335
[767]	1336	ENDIF
	1337
[151]	1338	!
[767]	1339	!-- Read binary data from restart file
	1340	DO i = 0, io_blocks-1
	1341	IF ( i == io_group ) THEN
	1342	CALL read_3d_binary
	1343	ENDIF
	1344	#if defined( __parallel )
	1345	CALL MPI_BARRIER( comm2d, ierr )
	1346	#endif
	1347	ENDDO
	1348
[328]	1349	!
[767]	1350	!-- Initialization of the turbulence recycling method
[1788]	1351	IF ( TRIM( initializing_actions ) == 'cyclic_fill' .AND. &
[767]	1352	turbulent_inflow ) THEN
	1353	!
	1354	!-- First store the profiles to be used at the inflow.
	1355	!-- These profiles are the (temporally) and horizontally averaged vertical
	1356	!-- profiles from the prerun. Alternatively, prescribed profiles
	1357	!-- for u,v-components can be used.
[1960]	1358	ALLOCATE( mean_inflow_profiles(nzb:nzt+1,7) )
[151]	1359
[767]	1360	IF ( use_prescribed_profile_data ) THEN
	1361	mean_inflow_profiles(:,1) = u_init ! u
	1362	mean_inflow_profiles(:,2) = v_init ! v
	1363	ELSE
[328]	1364	mean_inflow_profiles(:,1) = hom_sum(:,1,0) ! u
	1365	mean_inflow_profiles(:,2) = hom_sum(:,2,0) ! v
[767]	1366	ENDIF
	1367	mean_inflow_profiles(:,4) = hom_sum(:,4,0) ! pt
	1368	mean_inflow_profiles(:,5) = hom_sum(:,8,0) ! e
[1960]	1369	IF ( humidity ) &
	1370	mean_inflow_profiles(:,6) = hom_sum(:,41,0) ! q
	1371	IF ( passive_scalar ) &
	1372	mean_inflow_profiles(:,7) = hom_sum(:,115,0) ! s
[151]	1373
	1374	!
[767]	1375	!-- If necessary, adjust the horizontal flow field to the prescribed
	1376	!-- profiles
	1377	IF ( use_prescribed_profile_data ) THEN
	1378	DO i = nxlg, nxrg
[667]	1379	DO j = nysg, nyng
[328]	1380	DO k = nzb, nzt+1
[767]	1381	u(k,j,i) = u(k,j,i) - hom_sum(k,1,0) + u_init(k)
	1382	v(k,j,i) = v(k,j,i) - hom_sum(k,2,0) + v_init(k)
[328]	1383	ENDDO
[151]	1384	ENDDO
[767]	1385	ENDDO
	1386	ENDIF
[151]	1387
	1388	!
[767]	1389	!-- Use these mean profiles at the inflow (provided that Dirichlet
	1390	!-- conditions are used)
	1391	IF ( inflow_l ) THEN
	1392	DO j = nysg, nyng
	1393	DO k = nzb, nzt+1
	1394	u(k,j,nxlg:-1) = mean_inflow_profiles(k,1)
	1395	v(k,j,nxlg:-1) = mean_inflow_profiles(k,2)
[1340]	1396	w(k,j,nxlg:-1) = 0.0_wp
[767]	1397	pt(k,j,nxlg:-1) = mean_inflow_profiles(k,4)
	1398	e(k,j,nxlg:-1) = mean_inflow_profiles(k,5)
[1960]	1399	IF ( humidity ) &
[1615]	1400	q(k,j,nxlg:-1) = mean_inflow_profiles(k,6)
[1960]	1401	IF ( passive_scalar ) &
	1402	s(k,j,nxlg:-1) = mean_inflow_profiles(k,7)
[767]	1403	ENDDO
	1404	ENDDO
	1405	ENDIF
	1406
[151]	1407	!
[767]	1408	!-- Calculate the damping factors to be used at the inflow. For a
	1409	!-- turbulent inflow the turbulent fluctuations have to be limited
	1410	!-- vertically because otherwise the turbulent inflow layer will grow
	1411	!-- in time.
[1340]	1412	IF ( inflow_damping_height == 9999999.9_wp ) THEN
[767]	1413	!
	1414	!-- Default: use the inversion height calculated by the prerun; if
	1415	!-- this is zero, inflow_damping_height must be explicitly
	1416	!-- specified.
[1340]	1417	IF ( hom_sum(nzb+6,pr_palm,0) /= 0.0_wp ) THEN
[767]	1418	inflow_damping_height = hom_sum(nzb+6,pr_palm,0)
	1419	ELSE
[1788]	1420	WRITE( message_string, * ) 'inflow_damping_height must be ', &
	1421	'explicitly specified because&the inversion height ', &
[767]	1422	'calculated by the prerun is zero.'
	1423	CALL message( 'init_3d_model', 'PA0318', 1, 2, 0, 6, 0 )
[292]	1424	ENDIF
[151]	1425
[767]	1426	ENDIF
	1427
[1340]	1428	IF ( inflow_damping_width == 9999999.9_wp ) THEN
[151]	1429	!
[767]	1430	!-- Default for the transition range: one tenth of the undamped
	1431	!-- layer
[1340]	1432	inflow_damping_width = 0.1_wp * inflow_damping_height
[151]	1433
[767]	1434	ENDIF
[151]	1435
[767]	1436	ALLOCATE( inflow_damping_factor(nzb:nzt+1) )
[151]	1437
[767]	1438	DO k = nzb, nzt+1
[151]	1439
[767]	1440	IF ( zu(k) <= inflow_damping_height ) THEN
[1340]	1441	inflow_damping_factor(k) = 1.0_wp
[996]	1442	ELSEIF ( zu(k) <= ( inflow_damping_height + inflow_damping_width ) ) THEN
[1340]	1443	inflow_damping_factor(k) = 1.0_wp - &
[996]	1444	( zu(k) - inflow_damping_height ) / &
	1445	inflow_damping_width
[767]	1446	ELSE
[1340]	1447	inflow_damping_factor(k) = 0.0_wp
[767]	1448	ENDIF
[151]	1449
[767]	1450	ENDDO
[151]	1451
[147]	1452	ENDIF
	1453
[152]	1454	!
[359]	1455	!-- Inside buildings set velocities and TKE back to zero
[1788]	1456	IF ( TRIM( initializing_actions ) == 'cyclic_fill' .AND. &
[359]	1457	topography /= 'flat' ) THEN
	1458	!
	1459	!-- Inside buildings set velocities and TKE back to zero.
	1460	!-- Other scalars (pt, q, s, km, kh, p, sa, ...) are ignored at present,
	1461	!-- maybe revise later.
[1001]	1462	DO i = nxlg, nxrg
	1463	DO j = nysg, nyng
[2232]	1464	DO k = nzb, nzt
	1465	u(k,j,i) = MERGE( u(k,j,i), 0.0_wp, &
	1466	BTEST( wall_flags_0(k,j,i), 1 ) )
	1467	v(k,j,i) = MERGE( v(k,j,i), 0.0_wp, &
	1468	BTEST( wall_flags_0(k,j,i), 2 ) )
	1469	w(k,j,i) = MERGE( w(k,j,i), 0.0_wp, &
	1470	BTEST( wall_flags_0(k,j,i), 3 ) )
	1471	e(k,j,i) = MERGE( e(k,j,i), 0.0_wp, &
	1472	BTEST( wall_flags_0(k,j,i), 0 ) )
	1473	tu_m(k,j,i) = MERGE( tu_m(k,j,i), 0.0_wp, &
	1474	BTEST( wall_flags_0(k,j,i), 1 ) )
	1475	tv_m(k,j,i) = MERGE( tv_m(k,j,i), 0.0_wp, &
	1476	BTEST( wall_flags_0(k,j,i), 2 ) )
	1477	tw_m(k,j,i) = MERGE( tw_m(k,j,i), 0.0_wp, &
	1478	BTEST( wall_flags_0(k,j,i), 3 ) )
	1479	te_m(k,j,i) = MERGE( te_m(k,j,i), 0.0_wp, &
	1480	BTEST( wall_flags_0(k,j,i), 0 ) )
	1481	tpt_m(k,j,i) = MERGE( tpt_m(k,j,i), 0.0_wp, &
	1482	BTEST( wall_flags_0(k,j,i), 0 ) )
	1483	ENDDO
[359]	1484	ENDDO
[1001]	1485	ENDDO
[359]	1486
	1487	ENDIF
	1488
	1489	!
[1]	1490	!-- Calculate initial temperature field and other constants used in case
	1491	!-- of a sloping surface
	1492	IF ( sloping_surface ) CALL init_slope
	1493
	1494	!
	1495	!-- Initialize new time levels (only done in order to set boundary values
	1496	!-- including ghost points)
	1497	e_p = e; pt_p = pt; u_p = u; v_p = v; w_p = w
[1960]	1498	IF ( humidity ) THEN
[1053]	1499	q_p = q
[1822]	1500	IF ( cloud_physics .AND. microphysics_seifert ) THEN
[1053]	1501	qr_p = qr
	1502	nr_p = nr
	1503	ENDIF
	1504	ENDIF
[1960]	1505	IF ( passive_scalar ) s_p = s
	1506	IF ( ocean ) sa_p = sa
[1]	1507
[181]	1508	!
	1509	!-- Allthough tendency arrays are set in prognostic_equations, they have
	1510	!-- have to be predefined here because they are used (but multiplied with 0)
	1511	!-- there before they are set.
[1340]	1512	te_m = 0.0_wp; tpt_m = 0.0_wp; tu_m = 0.0_wp; tv_m = 0.0_wp; tw_m = 0.0_wp
[1960]	1513	IF ( humidity ) THEN
[1340]	1514	tq_m = 0.0_wp
[1822]	1515	IF ( cloud_physics .AND. microphysics_seifert ) THEN
[1340]	1516	tqr_m = 0.0_wp
	1517	tnr_m = 0.0_wp
[1053]	1518	ENDIF
	1519	ENDIF
[1960]	1520	IF ( passive_scalar ) ts_m = 0.0_wp
	1521	IF ( ocean ) tsa_m = 0.0_wp
[181]	1522
[1402]	1523	CALL location_message( 'finished', .TRUE. )
[1384]	1524
[1]	1525	ELSE
	1526	!
	1527	!-- Actually this part of the programm should not be reached
[254]	1528	message_string = 'unknown initializing problem'
	1529	CALL message( 'init_3d_model', 'PA0193', 1, 2, 0, 6, 0 )
[1]	1530	ENDIF
	1531
[151]	1532
	1533	IF ( TRIM( initializing_actions ) /= 'read_restart_data' ) THEN
[1]	1534	!
[151]	1535	!-- Initialize old timelevels needed for radiation boundary conditions
	1536	IF ( outflow_l ) THEN
	1537	u_m_l(:,:,:) = u(:,:,1:2)
	1538	v_m_l(:,:,:) = v(:,:,0:1)
	1539	w_m_l(:,:,:) = w(:,:,0:1)
	1540	ENDIF
	1541	IF ( outflow_r ) THEN
	1542	u_m_r(:,:,:) = u(:,:,nx-1:nx)
	1543	v_m_r(:,:,:) = v(:,:,nx-1:nx)
	1544	w_m_r(:,:,:) = w(:,:,nx-1:nx)
	1545	ENDIF
	1546	IF ( outflow_s ) THEN
	1547	u_m_s(:,:,:) = u(:,0:1,:)
	1548	v_m_s(:,:,:) = v(:,1:2,:)
	1549	w_m_s(:,:,:) = w(:,0:1,:)
	1550	ENDIF
	1551	IF ( outflow_n ) THEN
	1552	u_m_n(:,:,:) = u(:,ny-1:ny,:)
	1553	v_m_n(:,:,:) = v(:,ny-1:ny,:)
	1554	w_m_n(:,:,:) = w(:,ny-1:ny,:)
	1555	ENDIF
[667]	1556
[151]	1557	ENDIF
[680]	1558
[667]	1559	!
	1560	!-- Calculate the initial volume flow at the right and north boundary
[709]	1561	IF ( conserve_volume_flow ) THEN
[151]	1562
[767]	1563	IF ( use_prescribed_profile_data ) THEN
[667]	1564
[1340]	1565	volume_flow_initial_l = 0.0_wp
	1566	volume_flow_area_l = 0.0_wp
[732]	1567
[667]	1568	IF ( nxr == nx ) THEN
	1569	DO j = nys, nyn
[2232]	1570	DO k = nzb+1, nzt
[1788]	1571	volume_flow_initial_l(1) = volume_flow_initial_l(1) + &
[2232]	1572	u_init(k) * dzw(k) &
	1573	* MERGE( 1.0_wp, 0.0_wp, &
	1574	BTEST( wall_flags_0(k,j,nxr), 1 )&
	1575	)
	1576
	1577	volume_flow_area_l(1) = volume_flow_area_l(1) + dzw(k) &
	1578	* MERGE( 1.0_wp, 0.0_wp, &
	1579	BTEST( wall_flags_0(k,j,nxr), 1 )&
	1580	)
[767]	1581	ENDDO
	1582	ENDDO
	1583	ENDIF
	1584
	1585	IF ( nyn == ny ) THEN
	1586	DO i = nxl, nxr
[2232]	1587	DO k = nzb+1, nzt
	1588	volume_flow_initial_l(2) = volume_flow_initial_l(2) + &
	1589	v_init(k) * dzw(k) &
	1590	* MERGE( 1.0_wp, 0.0_wp, &
	1591	BTEST( wall_flags_0(k,nyn,i), 2 )&
	1592	)
	1593	volume_flow_area_l(2) = volume_flow_area_l(2) + dzw(k) &
	1594	* MERGE( 1.0_wp, 0.0_wp, &
	1595	BTEST( wall_flags_0(k,nyn,i), 2 )&
	1596	)
[767]	1597	ENDDO
	1598	ENDDO
	1599	ENDIF
	1600
	1601	#if defined( __parallel )
	1602	CALL MPI_ALLREDUCE( volume_flow_initial_l(1), volume_flow_initial(1),&
	1603	2, MPI_REAL, MPI_SUM, comm2d, ierr )
	1604	CALL MPI_ALLREDUCE( volume_flow_area_l(1), volume_flow_area(1), &
	1605	2, MPI_REAL, MPI_SUM, comm2d, ierr )
	1606
	1607	#else
	1608	volume_flow_initial = volume_flow_initial_l
	1609	volume_flow_area = volume_flow_area_l
	1610	#endif
	1611
	1612	ELSEIF ( TRIM( initializing_actions ) == 'cyclic_fill' ) THEN
	1613
[1340]	1614	volume_flow_initial_l = 0.0_wp
	1615	volume_flow_area_l = 0.0_wp
[767]	1616
	1617	IF ( nxr == nx ) THEN
	1618	DO j = nys, nyn
[2232]	1619	DO k = nzb+1, nzt
[1788]	1620	volume_flow_initial_l(1) = volume_flow_initial_l(1) + &
[2232]	1621	hom_sum(k,1,0) * dzw(k) &
	1622	* MERGE( 1.0_wp, 0.0_wp, &
	1623	BTEST( wall_flags_0(k,j,nx), 1 ) &
	1624	)
	1625	volume_flow_area_l(1) = volume_flow_area_l(1) + dzw(k) &
	1626	* MERGE( 1.0_wp, 0.0_wp, &
	1627	BTEST( wall_flags_0(k,j,nx), 1 ) &
	1628	)
[667]	1629	ENDDO
	1630	ENDDO
	1631	ENDIF
	1632
	1633	IF ( nyn == ny ) THEN
	1634	DO i = nxl, nxr
[2232]	1635	DO k = nzb+1, nzt
[1788]	1636	volume_flow_initial_l(2) = volume_flow_initial_l(2) + &
[2232]	1637	hom_sum(k,2,0) * dzw(k) &
	1638	* MERGE( 1.0_wp, 0.0_wp, &
	1639	BTEST( wall_flags_0(k,ny,i), 2 ) &
	1640	)
	1641	volume_flow_area_l(2) = volume_flow_area_l(2) + dzw(k) &
	1642	* MERGE( 1.0_wp, 0.0_wp, &
	1643	BTEST( wall_flags_0(k,ny,i), 2 ) &
	1644	)
[667]	1645	ENDDO
	1646	ENDDO
	1647	ENDIF
	1648
[732]	1649	#if defined( __parallel )
	1650	CALL MPI_ALLREDUCE( volume_flow_initial_l(1), volume_flow_initial(1),&
	1651	2, MPI_REAL, MPI_SUM, comm2d, ierr )
	1652	CALL MPI_ALLREDUCE( volume_flow_area_l(1), volume_flow_area(1), &
	1653	2, MPI_REAL, MPI_SUM, comm2d, ierr )
	1654
	1655	#else
	1656	volume_flow_initial = volume_flow_initial_l
	1657	volume_flow_area = volume_flow_area_l
	1658	#endif
	1659
[667]	1660	ELSEIF ( TRIM( initializing_actions ) /= 'read_restart_data' ) THEN
	1661
[1340]	1662	volume_flow_initial_l = 0.0_wp
	1663	volume_flow_area_l = 0.0_wp
[732]	1664
[667]	1665	IF ( nxr == nx ) THEN
	1666	DO j = nys, nyn
[2232]	1667	DO k = nzb+1, nzt
	1668	volume_flow_initial_l(1) = volume_flow_initial_l(1) + &
	1669	u(k,j,nx) * dzw(k) &
	1670	* MERGE( 1.0_wp, 0.0_wp, &
	1671	BTEST( wall_flags_0(k,j,nx), 1 ) &
	1672	)
	1673	volume_flow_area_l(1) = volume_flow_area_l(1) + dzw(k) &
	1674	* MERGE( 1.0_wp, 0.0_wp, &
	1675	BTEST( wall_flags_0(k,j,nx), 1 ) &
	1676	)
[667]	1677	ENDDO
	1678	ENDDO
	1679	ENDIF
	1680
	1681	IF ( nyn == ny ) THEN
	1682	DO i = nxl, nxr
[2232]	1683	DO k = nzb+1, nzt
[1788]	1684	volume_flow_initial_l(2) = volume_flow_initial_l(2) + &
[2232]	1685	v(k,ny,i) * dzw(k) &
	1686	* MERGE( 1.0_wp, 0.0_wp, &
	1687	BTEST( wall_flags_0(k,ny,i), 2 ) &
	1688	)
	1689	volume_flow_area_l(2) = volume_flow_area_l(2) + dzw(k) &
	1690	* MERGE( 1.0_wp, 0.0_wp, &
	1691	BTEST( wall_flags_0(k,ny,i), 2 ) &
	1692	)
[667]	1693	ENDDO
	1694	ENDDO
	1695	ENDIF
	1696
	1697	#if defined( __parallel )
[732]	1698	CALL MPI_ALLREDUCE( volume_flow_initial_l(1), volume_flow_initial(1),&
	1699	2, MPI_REAL, MPI_SUM, comm2d, ierr )
	1700	CALL MPI_ALLREDUCE( volume_flow_area_l(1), volume_flow_area(1), &
	1701	2, MPI_REAL, MPI_SUM, comm2d, ierr )
[667]	1702
	1703	#else
[732]	1704	volume_flow_initial = volume_flow_initial_l
	1705	volume_flow_area = volume_flow_area_l
[667]	1706	#endif
	1707
[732]	1708	ENDIF
	1709
[151]	1710	!
[709]	1711	!-- In case of 'bulk_velocity' mode, volume_flow_initial is calculated
	1712	!-- from u\|v_bulk instead
[680]	1713	IF ( TRIM( conserve_volume_flow_mode ) == 'bulk_velocity' ) THEN
	1714	volume_flow_initial(1) = u_bulk * volume_flow_area(1)
	1715	volume_flow_initial(2) = v_bulk * volume_flow_area(2)
	1716	ENDIF
[667]	1717
[680]	1718	ENDIF
[2232]	1719	!
	1720	!-- Initialize surface elements and its attributes, e.g. heat- and
	1721	!-- momentumfluxes, roughness, scaling parameters.
	1722	!-- This is already done in case of restart data.
	1723	IF ( TRIM( initializing_actions ) /= 'read_restart_data' .AND. &
	1724	TRIM( initializing_actions ) /= 'cyclic_fill' ) THEN
	1725	CALL init_surfaces
	1726	!
	1727	!-- Finally, if random_heatflux is set, disturb shf at horizontal
	1728	!-- surfaces. Actually, this should be done in surface_mod, where all other
	1729	!-- initializations of surface quantities are done. However, this
	1730	!-- would create a ring dependency, hence, it is done here. Maybe delete
	1731	!-- disturb_heatflux and tranfer the respective code directly into the
	1732	!-- initialization in surface_mod.
	1733	IF ( use_surface_fluxes .AND. constant_heatflux .AND. &
	1734	random_heatflux ) THEN
	1735	IF ( surf_def_h(0)%ns >= 1 ) CALL disturb_heatflux( surf_def_h(0) )
	1736	IF ( surf_lsm_h%ns >= 1 ) CALL disturb_heatflux( surf_lsm_h )
	1737	IF ( surf_usm_h%ns >= 1 ) CALL disturb_heatflux( surf_usm_h )
	1738	ENDIF
	1739	ENDIF
[680]	1740
[787]	1741	!
[2232]	1742	!-- Initialize surface forcing corresponding to large-scale forcing. Therein,
	1743	!-- initialize heat-fluxes, etc. via datatype. Revise it later!
	1744	IF ( large_scale_forcing .AND. lsf_surf ) THEN
	1745	IF ( use_surface_fluxes .AND. constant_heatflux ) THEN
	1746	CALL ls_forcing_surf ( simulated_time )
	1747	ENDIF
	1748	ENDIF
	1749	!
[787]	1750	!-- Initialize quantities for special advections schemes
	1751	CALL init_advec
[680]	1752
[667]	1753	!
[680]	1754	!-- Impose random perturbation on the horizontal velocity field and then
	1755	!-- remove the divergences from the velocity field at the initial stage
[1788]	1756	IF ( create_disturbances .AND. disturbance_energy_limit /= 0.0_wp .AND. &
	1757	TRIM( initializing_actions ) /= 'read_restart_data' .AND. &
[680]	1758	TRIM( initializing_actions ) /= 'cyclic_fill' ) THEN
	1759
[1402]	1760	CALL location_message( 'creating initial disturbances', .FALSE. )
[2232]	1761	CALL disturb_field( 'u', tend, u )
	1762	CALL disturb_field( 'v', tend, v )
[1402]	1763	CALL location_message( 'finished', .TRUE. )
[1384]	1764
[1402]	1765	CALL location_message( 'calling pressure solver', .FALSE. )
[680]	1766	n_sor = nsor_ini
	1767	CALL pres
	1768	n_sor = nsor
[1402]	1769	CALL location_message( 'finished', .TRUE. )
[1384]	1770
[680]	1771	ENDIF
	1772
	1773	!
[1484]	1774	!-- If required, initialize quantities needed for the plant canopy model
[2007]	1775	IF ( plant_canopy ) THEN
	1776	CALL location_message( 'initializing plant canopy model', .FALSE. )
	1777	CALL pcm_init
	1778	CALL location_message( 'finished', .TRUE. )
	1779	ENDIF
[138]	1780
	1781	!
[1]	1782	!-- If required, initialize dvrp-software
[1340]	1783	IF ( dt_dvrp /= 9999999.9_wp ) CALL init_dvrp
[1]	1784
[96]	1785	IF ( ocean ) THEN
[1]	1786	!
[96]	1787	!-- Initialize quantities needed for the ocean model
	1788	CALL init_ocean
[388]	1789
[96]	1790	ELSE
	1791	!
	1792	!-- Initialize quantities for handling cloud physics
[849]	1793	!-- This routine must be called before lpm_init, because
[96]	1794	!-- otherwise, array pt_d_t, needed in data_output_dvrp (called by
[849]	1795	!-- lpm_init) is not defined.
[96]	1796	CALL init_cloud_physics
[1849]	1797	!
	1798	!-- Initialize bulk cloud microphysics
	1799	CALL microphysics_init
[96]	1800	ENDIF
[1]	1801
	1802	!
	1803	!-- If required, initialize particles
[849]	1804	IF ( particle_advection ) CALL lpm_init
[1]	1805
[1585]	1806	!
	1807	!-- If required, initialize quantities needed for the LSM
	1808	IF ( land_surface ) THEN
	1809	CALL location_message( 'initializing land surface model', .FALSE. )
[1817]	1810	CALL lsm_init
[1585]	1811	CALL location_message( 'finished', .TRUE. )
	1812	ENDIF
[1496]	1813
[1]	1814	!
[1691]	1815	!-- Initialize surface layer (done after LSM as roughness length are required
	1816	!-- for initialization
	1817	IF ( constant_flux_layer ) THEN
	1818	CALL location_message( 'initializing surface layer', .FALSE. )
	1819	CALL init_surface_layer_fluxes
	1820	CALL location_message( 'finished', .TRUE. )
	1821	ENDIF
	1822
	1823	!
[1496]	1824	!-- If required, initialize radiation model
	1825	IF ( radiation ) THEN
[1585]	1826	CALL location_message( 'initializing radiation model', .FALSE. )
[1826]	1827	CALL radiation_init
[1585]	1828	CALL location_message( 'finished', .TRUE. )
[1496]	1829	ENDIF
[2007]	1830
[1914]	1831	!
[2007]	1832	!-- If required, initialize urban surface model
	1833	IF ( urban_surface ) THEN
	1834	CALL location_message( 'initializing urban surface model', .FALSE. )
	1835	CALL usm_init_urban_surface
	1836	CALL location_message( 'finished', .TRUE. )
	1837	ENDIF
	1838
	1839	!
[1914]	1840	!-- If required, initialize quantities needed for the wind turbine model
	1841	IF ( wind_turbine ) THEN
	1842	CALL location_message( 'initializing wind turbine model', .FALSE. )
	1843	CALL wtm_init
	1844	CALL location_message( 'finished', .TRUE. )
	1845	ENDIF
[1496]	1846
[1914]	1847
[1496]	1848	!
[673]	1849	!-- Initialize the ws-scheme.
	1850	IF ( ws_scheme_sca .OR. ws_scheme_mom ) CALL ws_init
[1]	1851
	1852	!
[709]	1853	!-- Setting weighting factors for calculation of perturbation pressure
[1762]	1854	!-- and turbulent quantities from the RK substeps
[709]	1855	IF ( TRIM(timestep_scheme) == 'runge-kutta-3' ) THEN ! for RK3-method
	1856
[1322]	1857	weight_substep(1) = 1._wp/6._wp
	1858	weight_substep(2) = 3._wp/10._wp
	1859	weight_substep(3) = 8._wp/15._wp
[709]	1860
[1322]	1861	weight_pres(1) = 1._wp/3._wp
	1862	weight_pres(2) = 5._wp/12._wp
	1863	weight_pres(3) = 1._wp/4._wp
[709]	1864
	1865	ELSEIF ( TRIM(timestep_scheme) == 'runge-kutta-2' ) THEN ! for RK2-method
	1866
[1322]	1867	weight_substep(1) = 1._wp/2._wp
	1868	weight_substep(2) = 1._wp/2._wp
[673]	1869
[1322]	1870	weight_pres(1) = 1._wp/2._wp
	1871	weight_pres(2) = 1._wp/2._wp
[709]	1872
[1001]	1873	ELSE ! for Euler-method
[709]	1874
[1340]	1875	weight_substep(1) = 1.0_wp
	1876	weight_pres(1) = 1.0_wp
[709]	1877
[673]	1878	ENDIF
	1879
	1880	!
[1]	1881	!-- Initialize Rayleigh damping factors
[1340]	1882	rdf = 0.0_wp
	1883	rdf_sc = 0.0_wp
	1884	IF ( rayleigh_damping_factor /= 0.0_wp ) THEN
[1788]	1885	IF ( .NOT. ocean ) THEN
[108]	1886	DO k = nzb+1, nzt
	1887	IF ( zu(k) >= rayleigh_damping_height ) THEN
[1788]	1888	rdf(k) = rayleigh_damping_factor * &
[1340]	1889	( SIN( pi * 0.5_wp * ( zu(k) - rayleigh_damping_height ) &
[1788]	1890	/ ( zu(nzt) - rayleigh_damping_height ) ) &
[1]	1891	)**2
[108]	1892	ENDIF
	1893	ENDDO
	1894	ELSE
	1895	DO k = nzt, nzb+1, -1
	1896	IF ( zu(k) <= rayleigh_damping_height ) THEN
[1788]	1897	rdf(k) = rayleigh_damping_factor * &
[1340]	1898	( SIN( pi * 0.5_wp * ( rayleigh_damping_height - zu(k) ) &
[1788]	1899	/ ( rayleigh_damping_height - zu(nzb+1) ) ) &
[108]	1900	)**2
	1901	ENDIF
	1902	ENDDO
	1903	ENDIF
[1]	1904	ENDIF
[785]	1905	IF ( scalar_rayleigh_damping ) rdf_sc = rdf
[1]	1906
	1907	!
[240]	1908	!-- Initialize the starting level and the vertical smoothing factor used for
	1909	!-- the external pressure gradient
[1340]	1910	dp_smooth_factor = 1.0_wp
[240]	1911	IF ( dp_external ) THEN
	1912	!
	1913	!-- Set the starting level dp_level_ind_b only if it has not been set before
	1914	!-- (e.g. in init_grid).
	1915	IF ( dp_level_ind_b == 0 ) THEN
	1916	ind_array = MINLOC( ABS( dp_level_b - zu ) )
	1917	dp_level_ind_b = ind_array(1) - 1 + nzb
	1918	! MINLOC uses lower array bound 1
	1919	ENDIF
	1920	IF ( dp_smooth ) THEN
[1340]	1921	dp_smooth_factor(:dp_level_ind_b) = 0.0_wp
[240]	1922	DO k = dp_level_ind_b+1, nzt
[1340]	1923	dp_smooth_factor(k) = 0.5_wp * ( 1.0_wp + SIN( pi * &
	1924	( REAL( k - dp_level_ind_b, KIND=wp ) / &
	1925	REAL( nzt - dp_level_ind_b, KIND=wp ) - 0.5_wp ) ) )
[240]	1926	ENDDO
	1927	ENDIF
	1928	ENDIF
	1929
	1930	!
[978]	1931	!-- Initialize damping zone for the potential temperature in case of
	1932	!-- non-cyclic lateral boundaries. The damping zone has the maximum value
	1933	!-- at the inflow boundary and decreases to zero at pt_damping_width.
[1340]	1934	ptdf_x = 0.0_wp
	1935	ptdf_y = 0.0_wp
[1159]	1936	IF ( bc_lr_dirrad ) THEN
[996]	1937	DO i = nxl, nxr
[978]	1938	IF ( ( i * dx ) < pt_damping_width ) THEN
[1340]	1939	ptdf_x(i) = pt_damping_factor * ( SIN( pi * 0.5_wp * &
	1940	REAL( pt_damping_width - i * dx, KIND=wp ) / ( &
[1788]	1941	REAL( pt_damping_width, KIND=wp ) ) ) )**2
[73]	1942	ENDIF
	1943	ENDDO
[1159]	1944	ELSEIF ( bc_lr_raddir ) THEN
[996]	1945	DO i = nxl, nxr
[978]	1946	IF ( ( i * dx ) > ( nx * dx - pt_damping_width ) ) THEN
[1322]	1947	ptdf_x(i) = pt_damping_factor * &
[1340]	1948	SIN( pi * 0.5_wp * &
	1949	( ( i - nx ) * dx + pt_damping_width ) / &
	1950	REAL( pt_damping_width, KIND=wp ) )**2
[73]	1951	ENDIF
[978]	1952	ENDDO
[1159]	1953	ELSEIF ( bc_ns_dirrad ) THEN
[996]	1954	DO j = nys, nyn
[978]	1955	IF ( ( j * dy ) > ( ny * dy - pt_damping_width ) ) THEN
[1322]	1956	ptdf_y(j) = pt_damping_factor * &
[1340]	1957	SIN( pi * 0.5_wp * &
	1958	( ( j - ny ) * dy + pt_damping_width ) / &
	1959	REAL( pt_damping_width, KIND=wp ) )**2
[1]	1960	ENDIF
[978]	1961	ENDDO
[1159]	1962	ELSEIF ( bc_ns_raddir ) THEN
[996]	1963	DO j = nys, nyn
[978]	1964	IF ( ( j * dy ) < pt_damping_width ) THEN
[1322]	1965	ptdf_y(j) = pt_damping_factor * &
[1340]	1966	SIN( pi * 0.5_wp * &
	1967	( pt_damping_width - j * dy ) / &
	1968	REAL( pt_damping_width, KIND=wp ) )**2
[1]	1969	ENDIF
[73]	1970	ENDDO
[1]	1971	ENDIF
	1972
	1973	!
	1974	!-- Pre-set masks for regional statistics. Default is the total model domain.
[1015]	1975	!-- Ghost points are excluded because counting values at the ghost boundaries
	1976	!-- would bias the statistics
[1340]	1977	rmask = 1.0_wp
	1978	rmask(:,nxlg:nxl-1,:) = 0.0_wp; rmask(:,nxr+1:nxrg,:) = 0.0_wp
	1979	rmask(nysg:nys-1,:,:) = 0.0_wp; rmask(nyn+1:nyng,:,:) = 0.0_wp
[1]	1980
	1981	!
[51]	1982	!-- User-defined initializing actions. Check afterwards, if maximum number
[709]	1983	!-- of allowed timeseries is exceeded
[1]	1984	CALL user_init
	1985
[51]	1986	IF ( dots_num > dots_max ) THEN
[1788]	1987	WRITE( message_string, * ) 'number of time series quantities exceeds', &
	1988	' its maximum of dots_max = ', dots_max, &
[254]	1989	' &Please increase dots_max in modules.f90.'
	1990	CALL message( 'init_3d_model', 'PA0194', 1, 2, 0, 6, 0 )
[51]	1991	ENDIF
	1992
[1]	1993	!
	1994	!-- Input binary data file is not needed anymore. This line must be placed
	1995	!-- after call of user_init!
	1996	CALL close_file( 13 )
	1997
	1998	!
	1999	!-- Compute total sum of active mask grid points
[1738]	2000	!-- and the mean surface level height for each statistic region
[1]	2001	!-- ngp_2dh: number of grid points of a horizontal cross section through the
	2002	!-- total domain
	2003	!-- ngp_3d: number of grid points of the total domain
[132]	2004	ngp_2dh_outer_l = 0
	2005	ngp_2dh_outer = 0
	2006	ngp_2dh_s_inner_l = 0
	2007	ngp_2dh_s_inner = 0
	2008	ngp_2dh_l = 0
	2009	ngp_2dh = 0
[1340]	2010	ngp_3d_inner_l = 0.0_wp
[132]	2011	ngp_3d_inner = 0
	2012	ngp_3d = 0
	2013	ngp_sums = ( nz + 2 ) * ( pr_palm + max_pr_user )
[1]	2014
[1738]	2015	mean_surface_level_height = 0.0_wp
	2016	mean_surface_level_height_l = 0.0_wp
	2017
[2232]	2018	!
	2019	!-- To do: New concept for these non-topography grid points!
[1]	2020	DO sr = 0, statistic_regions
	2021	DO i = nxl, nxr
	2022	DO j = nys, nyn
[1340]	2023	IF ( rmask(j,i,sr) == 1.0_wp ) THEN
[1]	2024	!
	2025	!-- All xy-grid points
	2026	ngp_2dh_l(sr) = ngp_2dh_l(sr) + 1
	2027	!
[2232]	2028	!-- Determine mean surface-level height. In case of downward-
	2029	!-- facing walls are present, more than one surface level exist.
	2030	!-- In this case, use the lowest surface-level height.
	2031	IF ( surf_def_h(0)%start_index(j,i) <= &
	2032	surf_def_h(0)%end_index(j,i) ) THEN
	2033	m = surf_def_h(0)%start_index(j,i)
	2034	k = surf_def_h(0)%k(m)
	2035	mean_surface_level_height_l(sr) = &
	2036	mean_surface_level_height_l(sr) + zw(k-1)
	2037	ENDIF
	2038	IF ( surf_lsm_h%start_index(j,i) <= &
	2039	surf_lsm_h%end_index(j,i) ) THEN
	2040	m = surf_lsm_h%start_index(j,i)
	2041	k = surf_lsm_h%k(m)
	2042	mean_surface_level_height_l(sr) = &
	2043	mean_surface_level_height_l(sr) + zw(k-1)
	2044	ENDIF
	2045	IF ( surf_usm_h%start_index(j,i) <= &
	2046	surf_usm_h%end_index(j,i) ) THEN
	2047	m = surf_usm_h%start_index(j,i)
	2048	k = surf_usm_h%k(m)
	2049	mean_surface_level_height_l(sr) = &
	2050	mean_surface_level_height_l(sr) + zw(k-1)
	2051	ENDIF
	2052
	2053	k_surf = k - 1
	2054
	2055	DO k = nzb, nzt+1
	2056	!
	2057	!-- xy-grid points above topography
	2058	ngp_2dh_outer_l(k,sr) = ngp_2dh_outer_l(k,sr) + &
	2059	MERGE( 1, 0, BTEST( wall_flags_0(k,j,i), 24 ) )
	2060
	2061	ngp_2dh_s_inner_l(k,sr) = ngp_2dh_s_inner_l(k,sr) + &
	2062	MERGE( 1, 0, BTEST( wall_flags_0(k,j,i), 22 ) )
	2063
[1]	2064	ENDDO
	2065	!
	2066	!-- All grid points of the total domain above topography
[2232]	2067	ngp_3d_inner_l(sr) = ngp_3d_inner_l(sr) + ( nz - k_surf + 2 )
	2068
	2069
	2070
[1]	2071	ENDIF
	2072	ENDDO
	2073	ENDDO
	2074	ENDDO
	2075
	2076	sr = statistic_regions + 1
	2077	#if defined( __parallel )
[622]	2078	IF ( collective_wait ) CALL MPI_BARRIER( comm2d, ierr )
[1788]	2079	CALL MPI_ALLREDUCE( ngp_2dh_l(0), ngp_2dh(0), sr, MPI_INTEGER, MPI_SUM, &
[1]	2080	comm2d, ierr )
[622]	2081	IF ( collective_wait ) CALL MPI_BARRIER( comm2d, ierr )
[1788]	2082	CALL MPI_ALLREDUCE( ngp_2dh_outer_l(0,0), ngp_2dh_outer(0,0), (nz+2)*sr, &
[1]	2083	MPI_INTEGER, MPI_SUM, comm2d, ierr )
[622]	2084	IF ( collective_wait ) CALL MPI_BARRIER( comm2d, ierr )
[1788]	2085	CALL MPI_ALLREDUCE( ngp_2dh_s_inner_l(0,0), ngp_2dh_s_inner(0,0), &
[132]	2086	(nz+2)*sr, MPI_INTEGER, MPI_SUM, comm2d, ierr )
[622]	2087	IF ( collective_wait ) CALL MPI_BARRIER( comm2d, ierr )
[1788]	2088	CALL MPI_ALLREDUCE( ngp_3d_inner_l(0), ngp_3d_inner_tmp(0), sr, MPI_REAL, &
[1]	2089	MPI_SUM, comm2d, ierr )
[485]	2090	ngp_3d_inner = INT( ngp_3d_inner_tmp, KIND = SELECTED_INT_KIND( 18 ) )
[1738]	2091	IF ( collective_wait ) CALL MPI_BARRIER( comm2d, ierr )
[1788]	2092	CALL MPI_ALLREDUCE( mean_surface_level_height_l(0), &
	2093	mean_surface_level_height(0), sr, MPI_REAL, &
[1738]	2094	MPI_SUM, comm2d, ierr )
	2095	mean_surface_level_height = mean_surface_level_height / REAL( ngp_2dh )
[1]	2096	#else
[132]	2097	ngp_2dh = ngp_2dh_l
	2098	ngp_2dh_outer = ngp_2dh_outer_l
	2099	ngp_2dh_s_inner = ngp_2dh_s_inner_l
[485]	2100	ngp_3d_inner = INT( ngp_3d_inner_l, KIND = SELECTED_INT_KIND( 18 ) )
[1738]	2101	mean_surface_level_height = mean_surface_level_height_l / REAL( ngp_2dh_l )
[1]	2102	#endif
	2103
[560]	2104	ngp_3d = INT ( ngp_2dh, KIND = SELECTED_INT_KIND( 18 ) ) * &
	2105	INT ( (nz + 2 ), KIND = SELECTED_INT_KIND( 18 ) )
[1]	2106
	2107	!
	2108	!-- Set a lower limit of 1 in order to avoid zero divisions in flow_statistics,
	2109	!-- buoyancy, etc. A zero value will occur for cases where all grid points of
	2110	!-- the respective subdomain lie below the surface topography
[667]	2111	ngp_2dh_outer = MAX( 1, ngp_2dh_outer(:,:) )
[1788]	2112	ngp_3d_inner = MAX( INT(1, KIND = SELECTED_INT_KIND( 18 )), &
[631]	2113	ngp_3d_inner(:) )
[667]	2114	ngp_2dh_s_inner = MAX( 1, ngp_2dh_s_inner(:,:) )
[1]	2115
[1788]	2116	DEALLOCATE( mean_surface_level_height_l, ngp_2dh_l, ngp_2dh_outer_l, &
[1738]	2117	ngp_3d_inner_l, ngp_3d_inner_tmp )
[1]	2118
[1402]	2119	CALL location_message( 'leaving init_3d_model', .TRUE. )
[1]	2120
	2121	END SUBROUTINE init_3d_model

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