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source: palm/trunk/SOURCE/init_3d_model.f90 @ 1384

Last change on this file since 1384 was 1384, checked in by raasch, 10 years ago
output of location messages to stdout
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[1]	1	SUBROUTINE init_3d_model
	2
[1036]	3	!--------------------------------------------------------------------------------!
	4	! This file is part of PALM.
	5	!
	6	! PALM is free software: you can redistribute it and/or modify it under the terms
	7	! of the GNU General Public License as published by the Free Software Foundation,
	8	! either version 3 of the License, or (at your option) any later version.
	9	!
	10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	13	!
	14	! You should have received a copy of the GNU General Public License along with
	15	! PALM. If not, see <http://www.gnu.org/licenses/>.
	16	!
[1310]	17	! Copyright 1997-2014 Leibniz Universitaet Hannover
[1036]	18	!--------------------------------------------------------------------------------!
	19	!
[254]	20	! Current revisions:
[732]	21	! ------------------
[1384]	22	! location messages added
[1341]	23	!
[1054]	24	! Former revisions:
	25	! -----------------
	26	! $Id: init_3d_model.f90 1384 2014-05-02 14:31:06Z raasch $
	27	!
[1362]	28	! 1361 2014-04-16 15:17:48Z hoffmann
	29	! tend_* removed
	30	! Bugfix: w_subs is not allocated anymore if it is already allocated
	31	!
[1360]	32	! 1359 2014-04-11 17:15:14Z hoffmann
	33	! module lpm_init_mod added to use statements, because lpm_init has become a
	34	! module
	35	!
[1354]	36	! 1353 2014-04-08 15:21:23Z heinze
	37	! REAL constants provided with KIND-attribute
	38	!
[1341]	39	! 1340 2014-03-25 19:45:13Z kanani
	40	! REAL constants defined as wp-kind
	41	!
[1323]	42	! 1322 2014-03-20 16:38:49Z raasch
	43	! REAL constants defined as wp-kind
	44	! module interfaces removed
	45	!
[1321]	46	! 1320 2014-03-20 08:40:49Z raasch
	47	! ONLY-attribute added to USE-statements,
	48	! kind-parameters added to all INTEGER and REAL declaration statements,
	49	! kinds are defined in new module kinds,
	50	! revision history before 2012 removed,
	51	! comment fields (!:) to be used for variable explanations added to
	52	! all variable declaration statements
	53	!
[1317]	54	! 1316 2014-03-17 07:44:59Z heinze
	55	! Bugfix: allocation of w_subs
	56	!
[1300]	57	! 1299 2014-03-06 13:15:21Z heinze
	58	! Allocate w_subs due to extension of large scale subsidence in combination
	59	! with large scale forcing data (LSF_DATA)
	60	!
[1242]	61	! 1241 2013-10-30 11:36:58Z heinze
	62	! Overwrite initial profiles in case of nudging
	63	! Inititialize shf and qsws in case of large_scale_forcing
	64	!
[1222]	65	! 1221 2013-09-10 08:59:13Z raasch
	66	! +rflags_s_inner in copyin statement, use copyin for most arrays instead of
	67	! copy
	68	!
[1213]	69	! 1212 2013-08-15 08:46:27Z raasch
	70	! array tri is allocated and included in data copy statement
	71	!
[1196]	72	! 1195 2013-07-01 12:27:57Z heinze
	73	! Bugfix: move allocation of ref_state to parin.f90 and read_var_list.f90
	74	!
[1182]	75	! 1179 2013-06-14 05:57:58Z raasch
	76	! allocate and set ref_state to be used in buoyancy terms
	77	!
[1172]	78	! 1171 2013-05-30 11:27:45Z raasch
	79	! diss array is allocated with full size if accelerator boards are used
	80	!
[1160]	81	! 1159 2013-05-21 11:58:22Z fricke
	82	! -bc_lr_dirneu, bc_lr_neudir, bc_ns_dirneu, bc_ns_neudir
	83	!
[1154]	84	! 1153 2013-05-10 14:33:08Z raasch
	85	! diss array is allocated with dummy elements even if it is not needed
[1171]	86	! (required by PGI 13.4 / CUDA 5.0)
[1154]	87	!
[1116]	88	! 1115 2013-03-26 18:16:16Z hoffmann
	89	! unused variables removed
	90	!
[1114]	91	! 1113 2013-03-10 02:48:14Z raasch
	92	! openACC directive modified
	93	!
[1112]	94	! 1111 2013-03-08 23:54:10Z raasch
	95	! openACC directives added for pres
	96	! array diss allocated only if required
	97	!
[1093]	98	! 1092 2013-02-02 11:24:22Z raasch
	99	! unused variables removed
	100	!
[1066]	101	! 1065 2012-11-22 17:42:36Z hoffmann
	102	! allocation of diss (dissipation rate) in case of turbulence = .TRUE. added
	103	!
[1054]	104	! 1053 2012-11-13 17:11:03Z hoffmann
[1053]	105	! allocation and initialisation of necessary data arrays for the two-moment
	106	! cloud physics scheme the two new prognostic equations (nr, qr):
	107	! +dr, lambda_r, mu_r, sed_, xr, s, sws, swst, , _p, t_m, _1, _2, _3,
	108	! +tend_*, prr
[979]	109	!
[1037]	110	! 1036 2012-10-22 13:43:42Z raasch
	111	! code put under GPL (PALM 3.9)
	112	!
[1033]	113	! 1032 2012-10-21 13:03:21Z letzel
	114	! save memory by not allocating pt_2 in case of neutral = .T.
	115	!
[1026]	116	! 1025 2012-10-07 16:04:41Z letzel
	117	! bugfix: swap indices of mask for ghost boundaries
	118	!
[1017]	119	! 1015 2012-09-27 09:23:24Z raasch
	120	! mask is set to zero for ghost boundaries
	121	!
[1011]	122	! 1010 2012-09-20 07:59:54Z raasch
	123	! cpp switch __nopointer added for pointer free version
	124	!
[1004]	125	! 1003 2012-09-14 14:35:53Z raasch
	126	! nxra,nyna, nzta replaced ny nxr, nyn, nzt
	127	!
[1002]	128	! 1001 2012-09-13 14:08:46Z raasch
	129	! all actions concerning leapfrog scheme removed
	130	!
[997]	131	! 996 2012-09-07 10:41:47Z raasch
	132	! little reformatting
	133	!
[979]	134	! 978 2012-08-09 08:28:32Z fricke
[978]	135	! outflow damping layer removed
	136	! roughness length for scalar quantites z0h added
	137	! damping zone for the potential temperatur in case of non-cyclic lateral
	138	! boundaries added
	139	! initialization of ptdf_x, ptdf_y
	140	! initialization of c_u_m, c_u_m_l, c_v_m, c_v_m_l, c_w_m, c_w_m_l
[708]	141	!
[850]	142	! 849 2012-03-15 10:35:09Z raasch
	143	! init_particles renamed lpm_init
	144	!
[826]	145	! 825 2012-02-19 03:03:44Z raasch
	146	! wang_collision_kernel renamed wang_kernel
	147	!
[1]	148	! Revision 1.1 1998/03/09 16:22:22 raasch
	149	! Initial revision
	150	!
	151	!
	152	! Description:
	153	! ------------
	154	! Allocation of arrays and initialization of the 3D model via
	155	! a) pre-run the 1D model
	156	! or
	157	! b) pre-set constant linear profiles
	158	! or
	159	! c) read values of a previous run
	160	!------------------------------------------------------------------------------!
	161
[667]	162	USE advec_ws
[1320]	163
[1]	164	USE arrays_3d
[1320]	165
	166	USE cloud_parameters, &
	167	ONLY: nc_const, precipitation_amount, precipitation_rate, prr
	168
	169	USE constants, &
	170	ONLY: pi
	171
[1]	172	USE control_parameters
[1320]	173
	174	USE grid_variables, &
	175	ONLY: dx, dy
	176
[1]	177	USE indices
[1359]	178
	179	USE lpm_init_mod, &
	180	ONLY: lpm_init
[1320]	181
	182	USE kinds
	183
[1241]	184	USE ls_forcing_mod
[1320]	185
	186	USE model_1d, &
	187	ONLY: e1d, kh1d, km1d, l1d, rif1d, u1d, us1d, usws1d, v1d, vsws1d
	188
[51]	189	USE netcdf_control
[1320]	190
	191	USE particle_attributes, &
	192	ONLY: particle_advection, use_sgs_for_particles, wang_kernel
	193
[1]	194	USE pegrid
[1320]	195
	196	USE random_function_mod
	197
	198	USE statistics, &
	199	ONLY: hom, hom_sum, pr_palm, rmask, spectrum_x, spectrum_y, &
	200	statistic_regions, sums, sums_divnew_l, sums_divold_l, sums_l, &
	201	sums_l_l, sums_up_fraction_l, sums_wsts_bc_l, ts_value, &
	202	weight_pres, weight_substep
	203
	204	USE transpose_indices
[1]	205
	206	IMPLICIT NONE
	207
[1320]	208	INTEGER(iwp) :: i !:
	209	INTEGER(iwp) :: ind_array(1) !:
	210	INTEGER(iwp) :: j !:
	211	INTEGER(iwp) :: k !:
	212	INTEGER(iwp) :: sr !:
[1]	213
[1320]	214	INTEGER(iwp), DIMENSION(:), ALLOCATABLE :: ngp_2dh_l !:
[1]	215
[1320]	216	INTEGER(iwp), DIMENSION(:,:), ALLOCATABLE :: ngp_2dh_outer_l !:
	217	INTEGER(iwp), DIMENSION(:,:), ALLOCATABLE :: ngp_2dh_s_inner_l !:
[1]	218
[1320]	219	REAL(wp), DIMENSION(1:2) :: volume_flow_area_l !:
	220	REAL(wp), DIMENSION(1:2) :: volume_flow_initial_l !:
[1]	221
[1320]	222	REAL(wp), DIMENSION(:), ALLOCATABLE :: ngp_3d_inner_l !:
	223	REAL(wp), DIMENSION(:), ALLOCATABLE :: ngp_3d_inner_tmp !:
[1]	224
[485]	225
[1384]	226	CALL location_message( 'allocating arrays' )
[1]	227	!
	228	!-- Allocate arrays
	229	ALLOCATE( ngp_2dh(0:statistic_regions), ngp_2dh_l(0:statistic_regions), &
	230	ngp_3d(0:statistic_regions), &
	231	ngp_3d_inner(0:statistic_regions), &
	232	ngp_3d_inner_l(0:statistic_regions), &
[485]	233	ngp_3d_inner_tmp(0:statistic_regions), &
[1]	234	sums_divnew_l(0:statistic_regions), &
	235	sums_divold_l(0:statistic_regions) )
[1195]	236	ALLOCATE( dp_smooth_factor(nzb:nzt), rdf(nzb+1:nzt), rdf_sc(nzb+1:nzt) )
[143]	237	ALLOCATE( ngp_2dh_outer(nzb:nzt+1,0:statistic_regions), &
[1]	238	ngp_2dh_outer_l(nzb:nzt+1,0:statistic_regions), &
[132]	239	ngp_2dh_s_inner(nzb:nzt+1,0:statistic_regions), &
	240	ngp_2dh_s_inner_l(nzb:nzt+1,0:statistic_regions), &
[996]	241	rmask(nysg:nyng,nxlg:nxrg,0:statistic_regions), &
[87]	242	sums(nzb:nzt+1,pr_palm+max_pr_user), &
	243	sums_l(nzb:nzt+1,pr_palm+max_pr_user,0:threads_per_task-1), &
[1]	244	sums_l_l(nzb:nzt+1,0:statistic_regions,0:threads_per_task-1), &
	245	sums_up_fraction_l(10,3,0:statistic_regions), &
[48]	246	sums_wsts_bc_l(nzb:nzt+1,0:statistic_regions), &
[394]	247	ts_value(dots_max,0:statistic_regions) )
[978]	248	ALLOCATE( ptdf_x(nxlg:nxrg), ptdf_y(nysg:nyng) )
[1]	249
[1001]	250	ALLOCATE( rif(nysg:nyng,nxlg:nxrg), shf(nysg:nyng,nxlg:nxrg), &
	251	ts(nysg:nyng,nxlg:nxrg), tswst(nysg:nyng,nxlg:nxrg), &
	252	us(nysg:nyng,nxlg:nxrg), usws(nysg:nyng,nxlg:nxrg), &
	253	uswst(nysg:nyng,nxlg:nxrg), vsws(nysg:nyng,nxlg:nxrg), &
	254	vswst(nysg:nyng,nxlg:nxrg), z0(nysg:nyng,nxlg:nxrg), &
[978]	255	z0h(nysg:nyng,nxlg:nxrg) )
[1]	256
[1010]	257	ALLOCATE( d(nzb+1:nzt,nys:nyn,nxl:nxr), &
	258	kh(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	259	km(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	260	p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	261	tend(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	262
	263	#if defined( __nopointer )
	264	ALLOCATE( e(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	265	e_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	266	pt(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	267	pt_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	268	u(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	269	u_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	270	v(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	271	v_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	272	w(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	273	w_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	274	te_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	275	tpt_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	276	tu_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	277	tv_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	278	tw_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	279	#else
	280	ALLOCATE( e_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	281	e_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	282	e_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	283	pt_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	284	pt_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	285	u_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	286	u_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	287	u_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	288	v_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	289	v_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	290	v_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	291	w_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	292	w_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
[667]	293	w_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1032]	294	IF ( .NOT. neutral ) THEN
	295	ALLOCATE( pt_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	296	ENDIF
[1010]	297	#endif
	298
[673]	299	!
[707]	300	!-- Following array is required for perturbation pressure within the iterative
	301	!-- pressure solvers. For the multistep schemes (Runge-Kutta), array p holds
	302	!-- the weighted average of the substeps and cannot be used in the Poisson
	303	!-- solver.
	304	IF ( psolver == 'sor' ) THEN
	305	ALLOCATE( p_loc(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	306	ELSEIF ( psolver == 'multigrid' ) THEN
	307	!
	308	!-- For performance reasons, multigrid is using one ghost layer only
	309	ALLOCATE( p_loc(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1) )
[673]	310	ENDIF
[1]	311
[1111]	312	!
	313	!-- Array for storing constant coeffficients of the tridiagonal solver
	314	IF ( psolver == 'poisfft' ) THEN
[1212]	315	ALLOCATE( tri(nxl_z:nxr_z,nys_z:nyn_z,0:nz-1,2) )
[1111]	316	ALLOCATE( tric(nxl_z:nxr_z,nys_z:nyn_z,0:nz-1) )
	317	ENDIF
	318
[75]	319	IF ( humidity .OR. passive_scalar ) THEN
[1]	320	!
[75]	321	!-- 2D-humidity/scalar arrays
[1001]	322	ALLOCATE ( qs(nysg:nyng,nxlg:nxrg), &
	323	qsws(nysg:nyng,nxlg:nxrg), &
	324	qswst(nysg:nyng,nxlg:nxrg) )
[1]	325
	326	!
[75]	327	!-- 3D-humidity/scalar arrays
[1010]	328	#if defined( __nopointer )
	329	ALLOCATE( q(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	330	q_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	331	tq_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	332	#else
[667]	333	ALLOCATE( q_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	334	q_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	335	q_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1010]	336	#endif
[1]	337
	338	!
[75]	339	!-- 3D-arrays needed for humidity only
	340	IF ( humidity ) THEN
[1010]	341	#if defined( __nopointer )
	342	ALLOCATE( vpt(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	343	#else
[667]	344	ALLOCATE( vpt_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1010]	345	#endif
[1]	346
	347	IF ( cloud_physics ) THEN
[1053]	348
[1]	349	!
	350	!-- Liquid water content
[1010]	351	#if defined( __nopointer )
	352	ALLOCATE ( ql(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	353	#else
[667]	354	ALLOCATE ( ql_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1010]	355	#endif
[72]	356	!
	357	!-- Precipitation amount and rate (only needed if output is switched)
[667]	358	ALLOCATE( precipitation_amount(nysg:nyng,nxlg:nxrg), &
	359	precipitation_rate(nysg:nyng,nxlg:nxrg) )
[1053]	360
	361	IF ( icloud_scheme == 0 ) THEN
	362	!
[1115]	363	!-- 1D-arrays
	364	ALLOCATE ( nc_1d(nzb:nzt+1), pt_1d(nzb:nzt+1), &
	365	q_1d(nzb:nzt+1), qc_1d(nzb:nzt+1) )
[1053]	366	!
[1115]	367	!-- 3D-cloud water content
[1053]	368	#if defined( __nopointer )
[1115]	369	ALLOCATE( qc(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1053]	370	#else
[1115]	371	ALLOCATE( qc_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1053]	372	#endif
[1115]	373
	374	IF ( precipitation ) THEN
[1053]	375	!
[1115]	376	!-- 1D-arrays
	377	ALLOCATE ( nr_1d(nzb:nzt+1), qr_1d(nzb:nzt+1) )
[1361]	378
[1115]	379	!
	380	!-- 2D-rain water content and rain drop concentration arrays
	381	ALLOCATE ( qrs(nysg:nyng,nxlg:nxrg), &
	382	qrsws(nysg:nyng,nxlg:nxrg), &
	383	qrswst(nysg:nyng,nxlg:nxrg), &
	384	nrs(nysg:nyng,nxlg:nxrg), &
	385	nrsws(nysg:nyng,nxlg:nxrg), &
	386	nrswst(nysg:nyng,nxlg:nxrg) )
	387	!
	388	!-- 3D-rain water content, rain drop concentration arrays
	389	#if defined( __nopointer )
	390	ALLOCATE( nr(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	391	nr_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	392	qr(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	393	qr_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	394	tnr_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	395	tqr_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	396	#else
	397	ALLOCATE( nr_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	398	nr_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	399	nr_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	400	qr_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	401	qr_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	402	qr_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	403	#endif
	404	!
	405	!-- 3d-precipitation rate
[1053]	406	ALLOCATE( prr(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	407	ENDIF
	408
	409	ENDIF
[1]	410	ENDIF
	411
	412	IF ( cloud_droplets ) THEN
	413	!
[1010]	414	!-- Liquid water content, change in liquid water content
	415	#if defined( __nopointer )
	416	ALLOCATE ( ql(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	417	ql_c(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	418	#else
[667]	419	ALLOCATE ( ql_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
[1010]	420	ql_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	421	#endif
	422	!
	423	!-- Real volume of particles (with weighting), volume of particles
	424	ALLOCATE ( ql_v(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
[667]	425	ql_vp(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1]	426	ENDIF
	427
	428	ENDIF
	429
	430	ENDIF
	431
[94]	432	IF ( ocean ) THEN
[1001]	433	ALLOCATE( saswsb(nysg:nyng,nxlg:nxrg), &
	434	saswst(nysg:nyng,nxlg:nxrg) )
[1010]	435	#if defined( __nopointer )
	436	ALLOCATE( prho(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	437	rho(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	438	sa(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	439	sa_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	440	tsa_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	441	#else
[667]	442	ALLOCATE( prho_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	443	rho_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	444	sa_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	445	sa_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	446	sa_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[388]	447	prho => prho_1
	448	rho => rho_1 ! routines calc_mean_profile and diffusion_e require
	449	! density to be apointer
[1010]	450	#endif
[108]	451	IF ( humidity_remote ) THEN
[667]	452	ALLOCATE( qswst_remote(nysg:nyng,nxlg:nxrg))
[1340]	453	qswst_remote = 0.0_wp
[108]	454	ENDIF
[94]	455	ENDIF
	456
[1]	457	!
	458	!-- 3D-array for storing the dissipation, needed for calculating the sgs
	459	!-- particle velocities
[1171]	460	IF ( use_sgs_for_particles .OR. wang_kernel .OR. turbulence .OR. &
	461	num_acc_per_node > 0 ) THEN
[1153]	462	ALLOCATE( diss(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1]	463	ENDIF
	464
[1340]	465	IF ( dt_dosp /= 9999999.9_wp ) THEN
[1]	466	ALLOCATE( spectrum_x( 1:nx/2, 1:10, 1:10 ), &
	467	spectrum_y( 1:ny/2, 1:10, 1:10 ) )
[1340]	468	spectrum_x = 0.0_wp
	469	spectrum_y = 0.0_wp
[1]	470	ENDIF
	471
	472	!
[1299]	473	!-- 1D-array for large scale subsidence velocity
[1361]	474	IF ( .NOT. ALLOCATED( w_subs ) ) THEN
	475	ALLOCATE ( w_subs(nzb:nzt+1) )
	476	w_subs = 0.0_wp
	477	ENDIF
[1299]	478
	479	!
[138]	480	!-- 3D-arrays for the leaf area density and the canopy drag coefficient
	481	IF ( plant_canopy ) THEN
[667]	482	ALLOCATE ( lad_s(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	483	lad_u(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	484	lad_v(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	485	lad_w(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	486	cdc(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[153]	487
	488	IF ( passive_scalar ) THEN
[996]	489	ALLOCATE ( sls(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
[667]	490	sec(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[153]	491	ENDIF
	492
[1340]	493	IF ( cthf /= 0.0_wp ) THEN
[996]	494	ALLOCATE ( lai(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
[667]	495	canopy_heat_flux(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[153]	496	ENDIF
	497
[138]	498	ENDIF
	499
	500	!
[51]	501	!-- 4D-array for storing the Rif-values at vertical walls
	502	IF ( topography /= 'flat' ) THEN
[667]	503	ALLOCATE( rif_wall(nzb:nzt+1,nysg:nyng,nxlg:nxrg,1:4) )
[1340]	504	rif_wall = 0.0_wp
[51]	505	ENDIF
	506
	507	!
[106]	508	!-- Arrays to store velocity data from t-dt and the phase speeds which
	509	!-- are needed for radiation boundary conditions
[73]	510	IF ( outflow_l ) THEN
[667]	511	ALLOCATE( u_m_l(nzb:nzt+1,nysg:nyng,1:2), &
	512	v_m_l(nzb:nzt+1,nysg:nyng,0:1), &
	513	w_m_l(nzb:nzt+1,nysg:nyng,0:1) )
[73]	514	ENDIF
	515	IF ( outflow_r ) THEN
[667]	516	ALLOCATE( u_m_r(nzb:nzt+1,nysg:nyng,nx-1:nx), &
	517	v_m_r(nzb:nzt+1,nysg:nyng,nx-1:nx), &
	518	w_m_r(nzb:nzt+1,nysg:nyng,nx-1:nx) )
[73]	519	ENDIF
[106]	520	IF ( outflow_l .OR. outflow_r ) THEN
[667]	521	ALLOCATE( c_u(nzb:nzt+1,nysg:nyng), c_v(nzb:nzt+1,nysg:nyng), &
	522	c_w(nzb:nzt+1,nysg:nyng) )
[106]	523	ENDIF
[73]	524	IF ( outflow_s ) THEN
[667]	525	ALLOCATE( u_m_s(nzb:nzt+1,0:1,nxlg:nxrg), &
	526	v_m_s(nzb:nzt+1,1:2,nxlg:nxrg), &
	527	w_m_s(nzb:nzt+1,0:1,nxlg:nxrg) )
[73]	528	ENDIF
	529	IF ( outflow_n ) THEN
[667]	530	ALLOCATE( u_m_n(nzb:nzt+1,ny-1:ny,nxlg:nxrg), &
	531	v_m_n(nzb:nzt+1,ny-1:ny,nxlg:nxrg), &
	532	w_m_n(nzb:nzt+1,ny-1:ny,nxlg:nxrg) )
[73]	533	ENDIF
[106]	534	IF ( outflow_s .OR. outflow_n ) THEN
[667]	535	ALLOCATE( c_u(nzb:nzt+1,nxlg:nxrg), c_v(nzb:nzt+1,nxlg:nxrg), &
	536	c_w(nzb:nzt+1,nxlg:nxrg) )
[106]	537	ENDIF
[996]	538	IF ( outflow_l .OR. outflow_r .OR. outflow_s .OR. outflow_n ) THEN
[978]	539	ALLOCATE( c_u_m_l(nzb:nzt+1), c_v_m_l(nzb:nzt+1), c_w_m_l(nzb:nzt+1) )
	540	ALLOCATE( c_u_m(nzb:nzt+1), c_v_m(nzb:nzt+1), c_w_m(nzb:nzt+1) )
	541	ENDIF
[73]	542
[978]	543
[1010]	544	#if ! defined( __nopointer )
[73]	545	!
[1]	546	!-- Initial assignment of the pointers
[1001]	547	e => e_1; e_p => e_2; te_m => e_3
[1032]	548	IF ( .NOT. neutral ) THEN
	549	pt => pt_1; pt_p => pt_2; tpt_m => pt_3
	550	ELSE
	551	pt => pt_1; pt_p => pt_1; tpt_m => pt_3
	552	ENDIF
[1001]	553	u => u_1; u_p => u_2; tu_m => u_3
	554	v => v_1; v_p => v_2; tv_m => v_3
	555	w => w_1; w_p => w_2; tw_m => w_3
[1]	556
[1001]	557	IF ( humidity .OR. passive_scalar ) THEN
	558	q => q_1; q_p => q_2; tq_m => q_3
[1053]	559	IF ( humidity ) THEN
	560	vpt => vpt_1
	561	IF ( cloud_physics ) THEN
	562	ql => ql_1
	563	IF ( icloud_scheme == 0 ) THEN
[1115]	564	qc => qc_1
	565	IF ( precipitation ) THEN
	566	qr => qr_1; qr_p => qr_2; tqr_m => qr_3
	567	nr => nr_1; nr_p => nr_2; tnr_m => nr_3
	568	ENDIF
[1053]	569	ENDIF
	570	ENDIF
	571	ENDIF
[1001]	572	IF ( cloud_droplets ) THEN
	573	ql => ql_1
	574	ql_c => ql_2
[1]	575	ENDIF
[1001]	576	ENDIF
[1]	577
[1001]	578	IF ( ocean ) THEN
	579	sa => sa_1; sa_p => sa_2; tsa_m => sa_3
	580	ENDIF
[1010]	581	#endif
[1]	582
	583	!
[709]	584	!-- Allocate arrays containing the RK coefficient for calculation of
	585	!-- perturbation pressure and turbulent fluxes. At this point values are
	586	!-- set for pressure calculation during initialization (where no timestep
	587	!-- is done). Further below the values needed within the timestep scheme
	588	!-- will be set.
	589	ALLOCATE( weight_substep(1:intermediate_timestep_count_max), &
[673]	590	weight_pres(1:intermediate_timestep_count_max) )
[1340]	591	weight_substep = 1.0_wp
	592	weight_pres = 1.0_wp
[709]	593	intermediate_timestep_count = 1 ! needed when simulated_time = 0.0
[673]	594
[1384]	595	CALL location_message( 'finished' )
[673]	596	!
[1]	597	!-- Initialize model variables
[147]	598	IF ( TRIM( initializing_actions ) /= 'read_restart_data' .AND. &
[328]	599	TRIM( initializing_actions ) /= 'cyclic_fill' ) THEN
[1]	600	!
	601	!-- First model run of a possible job queue.
	602	!-- Initial profiles of the variables must be computes.
	603	IF ( INDEX( initializing_actions, 'set_1d-model_profiles' ) /= 0 ) THEN
[1384]	604
	605	CALL location_message( 'initializing with 1D model profiles' )
[1]	606	!
	607	!-- Use solutions of the 1D model as initial profiles,
	608	!-- start 1D model
	609	CALL init_1d_model
	610	!
	611	!-- Transfer initial profiles to the arrays of the 3D model
[667]	612	DO i = nxlg, nxrg
	613	DO j = nysg, nyng
[1]	614	e(:,j,i) = e1d
	615	kh(:,j,i) = kh1d
	616	km(:,j,i) = km1d
	617	pt(:,j,i) = pt_init
	618	u(:,j,i) = u1d
	619	v(:,j,i) = v1d
	620	ENDDO
	621	ENDDO
	622
[75]	623	IF ( humidity .OR. passive_scalar ) THEN
[667]	624	DO i = nxlg, nxrg
	625	DO j = nysg, nyng
[1]	626	q(:,j,i) = q_init
	627	ENDDO
	628	ENDDO
[1353]	629	IF ( cloud_physics .AND. icloud_scheme == 0 .AND. &
[1115]	630	precipitation ) THEN
[1053]	631	DO i = nxlg, nxrg
	632	DO j = nysg, nyng
[1340]	633	qr(:,j,i) = 0.0_wp
	634	nr(:,j,i) = 0.0_wp
[1053]	635	ENDDO
	636	ENDDO
[1115]	637	!
	638	!-- Initialze nc_1d with default value
	639	nc_1d(:) = nc_const
	640
[1053]	641	ENDIF
[1]	642	ENDIF
	643
	644	IF ( .NOT. constant_diffusion ) THEN
[667]	645	DO i = nxlg, nxrg
	646	DO j = nysg, nyng
[1]	647	e(:,j,i) = e1d
	648	ENDDO
	649	ENDDO
	650	!
	651	!-- Store initial profiles for output purposes etc.
	652	hom(:,1,25,:) = SPREAD( l1d, 2, statistic_regions+1 )
	653
	654	IF ( prandtl_layer ) THEN
	655	rif = rif1d(nzb+1)
[1340]	656	ts = 0.0_wp ! could actually be computed more accurately in the
	657	! 1D model. Update when opportunity arises.
[1]	658	us = us1d
	659	usws = usws1d
	660	vsws = vsws1d
	661	ELSE
[1340]	662	ts = 0.0_wp ! must be set, because used in
	663	rif = 0.0_wp ! flowste
	664	us = 0.0_wp
	665	usws = 0.0_wp
	666	vsws = 0.0_wp
[1]	667	ENDIF
	668
	669	ELSE
[1340]	670	e = 0.0_wp ! must be set, because used in
	671	rif = 0.0_wp ! flowste
	672	ts = 0.0_wp
	673	us = 0.0_wp
	674	usws = 0.0_wp
	675	vsws = 0.0_wp
[1]	676	ENDIF
[102]	677	uswst = top_momentumflux_u
	678	vswst = top_momentumflux_v
[1]	679
	680	!
	681	!-- In every case qs = 0.0 (see also pt)
	682	!-- This could actually be computed more accurately in the 1D model.
	683	!-- Update when opportunity arises!
[1053]	684	IF ( humidity .OR. passive_scalar ) THEN
[1340]	685	qs = 0.0_wp
[1353]	686	IF ( cloud_physics .AND. icloud_scheme == 0 .AND. &
[1115]	687	precipitation ) THEN
[1340]	688	qrs = 0.0_wp
	689	nrs = 0.0_wp
[1053]	690	ENDIF
	691	ENDIF
[1]	692
	693	!
	694	!-- inside buildings set velocities back to zero
	695	IF ( topography /= 'flat' ) THEN
	696	DO i = nxl-1, nxr+1
	697	DO j = nys-1, nyn+1
[1340]	698	u(nzb:nzb_u_inner(j,i),j,i) = 0.0_wp
	699	v(nzb:nzb_v_inner(j,i),j,i) = 0.0_wp
[1]	700	ENDDO
	701	ENDDO
[667]	702
[1]	703	!
	704	!-- WARNING: The extra boundary conditions set after running the
	705	!-- ------- 1D model impose an error on the divergence one layer
	706	!-- below the topography; need to correct later
	707	!-- ATTENTION: Provisional correction for Piacsek & Williams
	708	!-- --------- advection scheme: keep u and v zero one layer below
	709	!-- the topography.
[667]	710	IF ( ibc_uv_b == 1 ) THEN
	711	!
[1]	712	!-- Neumann condition
	713	DO i = nxl-1, nxr+1
	714	DO j = nys-1, nyn+1
	715	IF ( nzb_u_inner(j,i) == 0 ) u(0,j,i) = u(1,j,i)
	716	IF ( nzb_v_inner(j,i) == 0 ) v(0,j,i) = v(1,j,i)
	717	ENDDO
	718	ENDDO
	719
	720	ENDIF
	721
	722	ENDIF
	723
[1384]	724	CALL location_message( 'finished' )
	725
[1]	726	ELSEIF ( INDEX(initializing_actions, 'set_constant_profiles') /= 0 ) &
	727	THEN
[1241]	728
[1384]	729	CALL location_message( 'initializing with constant profiles' )
[1]	730	!
[1241]	731	!-- Overwrite initial profiles in case of nudging
	732	IF ( nudging ) THEN
	733	pt_init = ptnudge(:,1)
	734	u_init = unudge(:,1)
	735	v_init = vnudge(:,1)
	736	IF ( humidity .OR. passive_scalar ) THEN
	737	q_init = qnudge(:,1)
	738	ENDIF
	739
	740	WRITE( message_string, * ) 'Initial profiles of u, v and ', &
	741	'scalars from NUDGING_DATA are used.'
	742	CALL message( 'init_3d_model', 'PA0370', 0, 0, 0, 6, 0 )
	743	ENDIF
	744
	745	!
[1]	746	!-- Use constructed initial profiles (velocity constant with height,
	747	!-- temperature profile with constant gradient)
[667]	748	DO i = nxlg, nxrg
	749	DO j = nysg, nyng
[1]	750	pt(:,j,i) = pt_init
	751	u(:,j,i) = u_init
	752	v(:,j,i) = v_init
	753	ENDDO
	754	ENDDO
[75]	755
[1]	756	!
[292]	757	!-- Set initial horizontal velocities at the lowest computational grid
	758	!-- levels to zero in order to avoid too small time steps caused by the
	759	!-- diffusion limit in the initial phase of a run (at k=1, dz/2 occurs
	760	!-- in the limiting formula!). The original values are stored to be later
	761	!-- used for volume flow control.
[667]	762	DO i = nxlg, nxrg
	763	DO j = nysg, nyng
[1340]	764	u(nzb:nzb_u_inner(j,i)+1,j,i) = 0.0_wp
	765	v(nzb:nzb_v_inner(j,i)+1,j,i) = 0.0_wp
[1]	766	ENDDO
	767	ENDDO
	768
[75]	769	IF ( humidity .OR. passive_scalar ) THEN
[667]	770	DO i = nxlg, nxrg
	771	DO j = nysg, nyng
[1]	772	q(:,j,i) = q_init
	773	ENDDO
	774	ENDDO
[1115]	775	IF ( cloud_physics .AND. icloud_scheme == 0 ) THEN
	776	!
	777	!-- Initialze nc_1d with default value
	778	nc_1d(:) = nc_const
	779
	780	IF ( precipitation ) THEN
	781	DO i = nxlg, nxrg
	782	DO j = nysg, nyng
[1340]	783	qr(:,j,i) = 0.0_wp
	784	nr(:,j,i) = 0.0_wp
[1115]	785	ENDDO
[1053]	786	ENDDO
[1115]	787	ENDIF
	788
[1053]	789	ENDIF
[1]	790	ENDIF
	791
[94]	792	IF ( ocean ) THEN
[667]	793	DO i = nxlg, nxrg
	794	DO j = nysg, nyng
[94]	795	sa(:,j,i) = sa_init
	796	ENDDO
	797	ENDDO
	798	ENDIF
[1]	799
	800	IF ( constant_diffusion ) THEN
	801	km = km_constant
	802	kh = km / prandtl_number
[1340]	803	e = 0.0_wp
	804	ELSEIF ( e_init > 0.0_wp ) THEN
[108]	805	DO k = nzb+1, nzt
[1340]	806	km(k,:,:) = 0.1_wp * l_grid(k) * SQRT( e_init )
[108]	807	ENDDO
	808	km(nzb,:,:) = km(nzb+1,:,:)
	809	km(nzt+1,:,:) = km(nzt,:,:)
	810	kh = km / prandtl_number
	811	e = e_init
[1]	812	ELSE
[108]	813	IF ( .NOT. ocean ) THEN
[1340]	814	kh = 0.01_wp ! there must exist an initial diffusion, because
	815	km = 0.01_wp ! otherwise no TKE would be produced by the
[108]	816	! production terms, as long as not yet
	817	! e = (u/cm)*2 at k=nzb+1
	818	ELSE
[1340]	819	kh = 0.00001_wp
	820	km = 0.00001_wp
[108]	821	ENDIF
[1340]	822	e = 0.0_wp
[1]	823	ENDIF
[1340]	824	rif = 0.0_wp
	825	ts = 0.0_wp
	826	us = 0.0_wp
	827	usws = 0.0_wp
[102]	828	uswst = top_momentumflux_u
[1340]	829	vsws = 0.0_wp
[102]	830	vswst = top_momentumflux_v
[1340]	831	IF ( humidity .OR. passive_scalar ) qs = 0.0_wp
[1]	832
	833	!
	834	!-- Compute initial temperature field and other constants used in case
	835	!-- of a sloping surface
	836	IF ( sloping_surface ) CALL init_slope
	837
[1384]	838	CALL location_message( 'finished' )
	839
[46]	840	ELSEIF ( INDEX(initializing_actions, 'by_user') /= 0 ) &
	841	THEN
[1384]	842
	843	CALL location_message( 'initializing by user' )
[46]	844	!
	845	!-- Initialization will completely be done by the user
	846	CALL user_init_3d_model
	847
[1384]	848	CALL location_message( 'finished' )
	849
[1]	850	ENDIF
[1384]	851
	852	CALL location_message( 'initializing statistics, boundary conditions, etc.' )
	853
[667]	854	!
	855	!-- Bottom boundary
	856	IF ( ibc_uv_b == 0 .OR. ibc_uv_b == 2 ) THEN
[1340]	857	u(nzb,:,:) = 0.0_wp
	858	v(nzb,:,:) = 0.0_wp
[667]	859	ENDIF
[1]	860
	861	!
[151]	862	!-- Apply channel flow boundary condition
[132]	863	IF ( TRIM( bc_uv_t ) == 'dirichlet_0' ) THEN
[1340]	864	u(nzt+1,:,:) = 0.0_wp
	865	v(nzt+1,:,:) = 0.0_wp
[132]	866	ENDIF
	867
	868	!
[1]	869	!-- Calculate virtual potential temperature
[1340]	870	IF ( humidity ) vpt = pt * ( 1.0_wp + 0.61_wp * q )
[1]	871
	872	!
	873	!-- Store initial profiles for output purposes etc.
	874	hom(:,1,5,:) = SPREAD( u(:,nys,nxl), 2, statistic_regions+1 )
	875	hom(:,1,6,:) = SPREAD( v(:,nys,nxl), 2, statistic_regions+1 )
[667]	876	IF ( ibc_uv_b == 0 .OR. ibc_uv_b == 2) THEN
[1340]	877	hom(nzb,1,5,:) = 0.0_wp
	878	hom(nzb,1,6,:) = 0.0_wp
[1]	879	ENDIF
	880	hom(:,1,7,:) = SPREAD( pt(:,nys,nxl), 2, statistic_regions+1 )
	881	hom(:,1,23,:) = SPREAD( km(:,nys,nxl), 2, statistic_regions+1 )
	882	hom(:,1,24,:) = SPREAD( kh(:,nys,nxl), 2, statistic_regions+1 )
	883
[97]	884	IF ( ocean ) THEN
	885	!
	886	!-- Store initial salinity profile
	887	hom(:,1,26,:) = SPREAD( sa(:,nys,nxl), 2, statistic_regions+1 )
	888	ENDIF
[1]	889
[75]	890	IF ( humidity ) THEN
[1]	891	!
	892	!-- Store initial profile of total water content, virtual potential
	893	!-- temperature
	894	hom(:,1,26,:) = SPREAD( q(:,nys,nxl), 2, statistic_regions+1 )
	895	hom(:,1,29,:) = SPREAD( vpt(:,nys,nxl), 2, statistic_regions+1 )
	896	IF ( cloud_physics .OR. cloud_droplets ) THEN
	897	!
	898	!-- Store initial profile of specific humidity and potential
	899	!-- temperature
	900	hom(:,1,27,:) = SPREAD( q(:,nys,nxl), 2, statistic_regions+1 )
	901	hom(:,1,28,:) = SPREAD( pt(:,nys,nxl), 2, statistic_regions+1 )
	902	ENDIF
	903	ENDIF
	904
	905	IF ( passive_scalar ) THEN
	906	!
	907	!-- Store initial scalar profile
	908	hom(:,1,26,:) = SPREAD( q(:,nys,nxl), 2, statistic_regions+1 )
	909	ENDIF
	910
	911	!
[19]	912	!-- Initialize fluxes at bottom surface
[1]	913	IF ( use_surface_fluxes ) THEN
	914
	915	IF ( constant_heatflux ) THEN
	916	!
	917	!-- Heat flux is prescribed
	918	IF ( random_heatflux ) THEN
	919	CALL disturb_heatflux
	920	ELSE
	921	shf = surface_heatflux
	922	!
[1241]	923	!-- Initialize shf with data from external file LSF_DATA
	924	IF ( large_scale_forcing .AND. lsf_surf ) THEN
	925	CALL ls_forcing_surf ( simulated_time )
	926	ENDIF
	927
	928	!
[1]	929	!-- Over topography surface_heatflux is replaced by wall_heatflux(0)
	930	IF ( TRIM( topography ) /= 'flat' ) THEN
[667]	931	DO i = nxlg, nxrg
	932	DO j = nysg, nyng
[1]	933	IF ( nzb_s_inner(j,i) /= 0 ) THEN
	934	shf(j,i) = wall_heatflux(0)
	935	ENDIF
	936	ENDDO
	937	ENDDO
	938	ENDIF
	939	ENDIF
	940	ENDIF
	941
	942	!
	943	!-- Determine the near-surface water flux
[75]	944	IF ( humidity .OR. passive_scalar ) THEN
[1115]	945	IF ( cloud_physics .AND. icloud_scheme == 0 .AND. &
	946	precipitation ) THEN
[1340]	947	qrsws = 0.0_wp
	948	nrsws = 0.0_wp
[1053]	949	ENDIF
[1]	950	IF ( constant_waterflux ) THEN
	951	qsws = surface_waterflux
[407]	952	!
	953	!-- Over topography surface_waterflux is replaced by
	954	!-- wall_humidityflux(0)
	955	IF ( TRIM( topography ) /= 'flat' ) THEN
	956	wall_qflux = wall_humidityflux
[667]	957	DO i = nxlg, nxrg
	958	DO j = nysg, nyng
[407]	959	IF ( nzb_s_inner(j,i) /= 0 ) THEN
	960	qsws(j,i) = wall_qflux(0)
	961	ENDIF
	962	ENDDO
	963	ENDDO
	964	ENDIF
[1]	965	ENDIF
	966	ENDIF
	967
	968	ENDIF
	969
	970	!
[19]	971	!-- Initialize fluxes at top surface
[94]	972	!-- Currently, only the heatflux and salinity flux can be prescribed.
	973	!-- The latent flux is zero in this case!
[19]	974	IF ( use_top_fluxes ) THEN
	975
	976	IF ( constant_top_heatflux ) THEN
	977	!
	978	!-- Heat flux is prescribed
	979	tswst = top_heatflux
	980
[1053]	981	IF ( humidity .OR. passive_scalar ) THEN
[1340]	982	qswst = 0.0_wp
[1115]	983	IF ( cloud_physics .AND. icloud_scheme == 0 .AND. &
	984	precipitation ) THEN
[1340]	985	nrswst = 0.0_wp
	986	qrswst = 0.0_wp
[1053]	987	ENDIF
	988	ENDIF
[94]	989
	990	IF ( ocean ) THEN
[95]	991	saswsb = bottom_salinityflux
[94]	992	saswst = top_salinityflux
	993	ENDIF
[102]	994	ENDIF
[19]	995
[102]	996	!
	997	!-- Initialization in case of a coupled model run
	998	IF ( coupling_mode == 'ocean_to_atmosphere' ) THEN
[1340]	999	tswst = 0.0_wp
[102]	1000	ENDIF
	1001
[19]	1002	ENDIF
	1003
	1004	!
[1]	1005	!-- Initialize Prandtl layer quantities
	1006	IF ( prandtl_layer ) THEN
	1007
	1008	z0 = roughness_length
[978]	1009	z0h = z0h_factor * z0
[1]	1010
	1011	IF ( .NOT. constant_heatflux ) THEN
	1012	!
	1013	!-- Surface temperature is prescribed. Here the heat flux cannot be
	1014	!-- simply estimated, because therefore rif, u* and theta* would have
	1015	!-- to be computed by iteration. This is why the heat flux is assumed
	1016	!-- to be zero before the first time step. It approaches its correct
	1017	!-- value in the course of the first few time steps.
[1340]	1018	shf = 0.0_wp
[1]	1019	ENDIF
	1020
[75]	1021	IF ( humidity .OR. passive_scalar ) THEN
[1340]	1022	IF ( .NOT. constant_waterflux ) qsws = 0.0_wp
[1115]	1023	IF ( cloud_physics .AND. icloud_scheme == 0 .AND. &
	1024	precipitation ) THEN
[1340]	1025	qrsws = 0.0_wp
	1026	nrsws = 0.0_wp
[1053]	1027	ENDIF
[1]	1028	ENDIF
	1029
	1030	ENDIF
	1031
[1179]	1032	!
	1033	!-- Set the reference state to be used in the buoyancy terms (for ocean runs
	1034	!-- the reference state will be set (overwritten) in init_ocean)
	1035	IF ( use_single_reference_value ) THEN
	1036	IF ( .NOT. humidity ) THEN
	1037	ref_state(:) = pt_reference
	1038	ELSE
	1039	ref_state(:) = vpt_reference
	1040	ENDIF
	1041	ELSE
	1042	IF ( .NOT. humidity ) THEN
	1043	ref_state(:) = pt_init(:)
	1044	ELSE
	1045	ref_state(:) = vpt(:,nys,nxl)
	1046	ENDIF
	1047	ENDIF
[152]	1048
	1049	!
[707]	1050	!-- For the moment, vertical velocity is zero
[1340]	1051	w = 0.0_wp
[1]	1052
	1053	!
	1054	!-- Initialize array sums (must be defined in first call of pres)
[1340]	1055	sums = 0.0_wp
[1]	1056
	1057	!
[707]	1058	!-- In case of iterative solvers, p must get an initial value
[1340]	1059	IF ( psolver == 'multigrid' .OR. psolver == 'sor' ) p = 0.0_wp
[707]	1060
	1061	!
[72]	1062	!-- Treating cloud physics, liquid water content and precipitation amount
	1063	!-- are zero at beginning of the simulation
	1064	IF ( cloud_physics ) THEN
[1340]	1065	ql = 0.0_wp
	1066	IF ( precipitation ) precipitation_amount = 0.0_wp
[1115]	1067	IF ( icloud_scheme == 0 ) THEN
[1340]	1068	qc = 0.0_wp
[1115]	1069	nc_1d = nc_const
	1070	ENDIF
[72]	1071	ENDIF
[673]	1072	!
[1]	1073	!-- Impose vortex with vertical axis on the initial velocity profile
	1074	IF ( INDEX( initializing_actions, 'initialize_vortex' ) /= 0 ) THEN
	1075	CALL init_rankine
	1076	ENDIF
	1077
	1078	!
	1079	!-- Impose temperature anomaly (advection test only)
	1080	IF ( INDEX( initializing_actions, 'initialize_ptanom' ) /= 0 ) THEN
	1081	CALL init_pt_anomaly
	1082	ENDIF
	1083
	1084	!
	1085	!-- If required, change the surface temperature at the start of the 3D run
[1340]	1086	IF ( pt_surface_initial_change /= 0.0_wp ) THEN
[1]	1087	pt(nzb,:,:) = pt(nzb,:,:) + pt_surface_initial_change
	1088	ENDIF
	1089
	1090	!
	1091	!-- If required, change the surface humidity/scalar at the start of the 3D
	1092	!-- run
[75]	1093	IF ( ( humidity .OR. passive_scalar ) .AND. &
[1340]	1094	q_surface_initial_change /= 0.0_wp ) THEN
[1]	1095	q(nzb,:,:) = q(nzb,:,:) + q_surface_initial_change
	1096	ENDIF
	1097	!
	1098	!-- Initialize the random number generator (from numerical recipes)
	1099	CALL random_function_ini
	1100
	1101	!
	1102	!-- Initialize old and new time levels.
[1340]	1103	te_m = 0.0_wp; tpt_m = 0.0_wp; tu_m = 0.0_wp; tv_m = 0.0_wp; tw_m = 0.0_wp
[1]	1104	e_p = e; pt_p = pt; u_p = u; v_p = v; w_p = w
	1105
[75]	1106	IF ( humidity .OR. passive_scalar ) THEN
[1340]	1107	tq_m = 0.0_wp
[1]	1108	q_p = q
[1115]	1109	IF ( cloud_physics .AND. icloud_scheme == 0 .AND. &
	1110	precipitation ) THEN
[1340]	1111	tqr_m = 0.0_wp
[1053]	1112	qr_p = qr
[1340]	1113	tnr_m = 0.0_wp
[1053]	1114	nr_p = nr
	1115	ENDIF
[1]	1116	ENDIF
	1117
[94]	1118	IF ( ocean ) THEN
[1340]	1119	tsa_m = 0.0_wp
[94]	1120	sa_p = sa
	1121	ENDIF
[667]	1122
[1384]	1123	CALL location_message( 'finished' )
[94]	1124
[147]	1125	ELSEIF ( TRIM( initializing_actions ) == 'read_restart_data' .OR. &
[667]	1126	TRIM( initializing_actions ) == 'cyclic_fill' ) &
[1]	1127	THEN
[1384]	1128
	1129	CALL location_message( 'initializing in case of restart / cyclic_fill' )
[1]	1130	!
[767]	1131	!-- When reading data for cyclic fill of 3D prerun data files, read
	1132	!-- some of the global variables from the restart file which are required
	1133	!-- for initializing the inflow
[328]	1134	IF ( TRIM( initializing_actions ) == 'cyclic_fill' ) THEN
[559]	1135
[759]	1136	DO i = 0, io_blocks-1
	1137	IF ( i == io_group ) THEN
	1138	CALL read_parts_of_var_list
	1139	CALL close_file( 13 )
	1140	ENDIF
	1141	#if defined( __parallel )
	1142	CALL MPI_BARRIER( comm2d, ierr )
	1143	#endif
	1144	ENDDO
[328]	1145
[767]	1146	ENDIF
	1147
[151]	1148	!
[767]	1149	!-- Read binary data from restart file
	1150	DO i = 0, io_blocks-1
	1151	IF ( i == io_group ) THEN
	1152	CALL read_3d_binary
	1153	ENDIF
	1154	#if defined( __parallel )
	1155	CALL MPI_BARRIER( comm2d, ierr )
	1156	#endif
	1157	ENDDO
	1158
[328]	1159	!
[767]	1160	!-- Initialization of the turbulence recycling method
	1161	IF ( TRIM( initializing_actions ) == 'cyclic_fill' .AND. &
	1162	turbulent_inflow ) THEN
	1163	!
	1164	!-- First store the profiles to be used at the inflow.
	1165	!-- These profiles are the (temporally) and horizontally averaged vertical
	1166	!-- profiles from the prerun. Alternatively, prescribed profiles
	1167	!-- for u,v-components can be used.
	1168	ALLOCATE( mean_inflow_profiles(nzb:nzt+1,5) )
[151]	1169
[767]	1170	IF ( use_prescribed_profile_data ) THEN
	1171	mean_inflow_profiles(:,1) = u_init ! u
	1172	mean_inflow_profiles(:,2) = v_init ! v
	1173	ELSE
[328]	1174	mean_inflow_profiles(:,1) = hom_sum(:,1,0) ! u
	1175	mean_inflow_profiles(:,2) = hom_sum(:,2,0) ! v
[767]	1176	ENDIF
	1177	mean_inflow_profiles(:,4) = hom_sum(:,4,0) ! pt
	1178	mean_inflow_profiles(:,5) = hom_sum(:,8,0) ! e
[151]	1179
	1180	!
[767]	1181	!-- If necessary, adjust the horizontal flow field to the prescribed
	1182	!-- profiles
	1183	IF ( use_prescribed_profile_data ) THEN
	1184	DO i = nxlg, nxrg
[667]	1185	DO j = nysg, nyng
[328]	1186	DO k = nzb, nzt+1
[767]	1187	u(k,j,i) = u(k,j,i) - hom_sum(k,1,0) + u_init(k)
	1188	v(k,j,i) = v(k,j,i) - hom_sum(k,2,0) + v_init(k)
[328]	1189	ENDDO
[151]	1190	ENDDO
[767]	1191	ENDDO
	1192	ENDIF
[151]	1193
	1194	!
[767]	1195	!-- Use these mean profiles at the inflow (provided that Dirichlet
	1196	!-- conditions are used)
	1197	IF ( inflow_l ) THEN
	1198	DO j = nysg, nyng
	1199	DO k = nzb, nzt+1
	1200	u(k,j,nxlg:-1) = mean_inflow_profiles(k,1)
	1201	v(k,j,nxlg:-1) = mean_inflow_profiles(k,2)
[1340]	1202	w(k,j,nxlg:-1) = 0.0_wp
[767]	1203	pt(k,j,nxlg:-1) = mean_inflow_profiles(k,4)
	1204	e(k,j,nxlg:-1) = mean_inflow_profiles(k,5)
	1205	ENDDO
	1206	ENDDO
	1207	ENDIF
	1208
[151]	1209	!
[767]	1210	!-- Calculate the damping factors to be used at the inflow. For a
	1211	!-- turbulent inflow the turbulent fluctuations have to be limited
	1212	!-- vertically because otherwise the turbulent inflow layer will grow
	1213	!-- in time.
[1340]	1214	IF ( inflow_damping_height == 9999999.9_wp ) THEN
[767]	1215	!
	1216	!-- Default: use the inversion height calculated by the prerun; if
	1217	!-- this is zero, inflow_damping_height must be explicitly
	1218	!-- specified.
[1340]	1219	IF ( hom_sum(nzb+6,pr_palm,0) /= 0.0_wp ) THEN
[767]	1220	inflow_damping_height = hom_sum(nzb+6,pr_palm,0)
	1221	ELSE
	1222	WRITE( message_string, * ) 'inflow_damping_height must be ',&
	1223	'explicitly specified because&the inversion height ', &
	1224	'calculated by the prerun is zero.'
	1225	CALL message( 'init_3d_model', 'PA0318', 1, 2, 0, 6, 0 )
[292]	1226	ENDIF
[151]	1227
[767]	1228	ENDIF
	1229
[1340]	1230	IF ( inflow_damping_width == 9999999.9_wp ) THEN
[151]	1231	!
[767]	1232	!-- Default for the transition range: one tenth of the undamped
	1233	!-- layer
[1340]	1234	inflow_damping_width = 0.1_wp * inflow_damping_height
[151]	1235
[767]	1236	ENDIF
[151]	1237
[767]	1238	ALLOCATE( inflow_damping_factor(nzb:nzt+1) )
[151]	1239
[767]	1240	DO k = nzb, nzt+1
[151]	1241
[767]	1242	IF ( zu(k) <= inflow_damping_height ) THEN
[1340]	1243	inflow_damping_factor(k) = 1.0_wp
[996]	1244	ELSEIF ( zu(k) <= ( inflow_damping_height + inflow_damping_width ) ) THEN
[1340]	1245	inflow_damping_factor(k) = 1.0_wp - &
[996]	1246	( zu(k) - inflow_damping_height ) / &
	1247	inflow_damping_width
[767]	1248	ELSE
[1340]	1249	inflow_damping_factor(k) = 0.0_wp
[767]	1250	ENDIF
[151]	1251
[767]	1252	ENDDO
[151]	1253
[147]	1254	ENDIF
	1255
[152]	1256	!
[359]	1257	!-- Inside buildings set velocities and TKE back to zero
	1258	IF ( TRIM( initializing_actions ) == 'cyclic_fill' .AND. &
	1259	topography /= 'flat' ) THEN
	1260	!
	1261	!-- Inside buildings set velocities and TKE back to zero.
	1262	!-- Other scalars (pt, q, s, km, kh, p, sa, ...) are ignored at present,
	1263	!-- maybe revise later.
[1001]	1264	DO i = nxlg, nxrg
	1265	DO j = nysg, nyng
[1340]	1266	u (nzb:nzb_u_inner(j,i),j,i) = 0.0_wp
	1267	v (nzb:nzb_v_inner(j,i),j,i) = 0.0_wp
	1268	w (nzb:nzb_w_inner(j,i),j,i) = 0.0_wp
	1269	e (nzb:nzb_w_inner(j,i),j,i) = 0.0_wp
	1270	tu_m(nzb:nzb_u_inner(j,i),j,i) = 0.0_wp
	1271	tv_m(nzb:nzb_v_inner(j,i),j,i) = 0.0_wp
	1272	tw_m(nzb:nzb_w_inner(j,i),j,i) = 0.0_wp
	1273	te_m(nzb:nzb_w_inner(j,i),j,i) = 0.0_wp
	1274	tpt_m(nzb:nzb_w_inner(j,i),j,i) = 0.0_wp
[359]	1275	ENDDO
[1001]	1276	ENDDO
[359]	1277
	1278	ENDIF
	1279
	1280	!
[1]	1281	!-- Calculate initial temperature field and other constants used in case
	1282	!-- of a sloping surface
	1283	IF ( sloping_surface ) CALL init_slope
	1284
	1285	!
	1286	!-- Initialize new time levels (only done in order to set boundary values
	1287	!-- including ghost points)
	1288	e_p = e; pt_p = pt; u_p = u; v_p = v; w_p = w
[1053]	1289	IF ( humidity .OR. passive_scalar ) THEN
	1290	q_p = q
[1115]	1291	IF ( cloud_physics .AND. icloud_scheme == 0 .AND. &
	1292	precipitation ) THEN
[1053]	1293	qr_p = qr
	1294	nr_p = nr
	1295	ENDIF
	1296	ENDIF
[94]	1297	IF ( ocean ) sa_p = sa
[1]	1298
[181]	1299	!
	1300	!-- Allthough tendency arrays are set in prognostic_equations, they have
	1301	!-- have to be predefined here because they are used (but multiplied with 0)
	1302	!-- there before they are set.
[1340]	1303	te_m = 0.0_wp; tpt_m = 0.0_wp; tu_m = 0.0_wp; tv_m = 0.0_wp; tw_m = 0.0_wp
[1053]	1304	IF ( humidity .OR. passive_scalar ) THEN
[1340]	1305	tq_m = 0.0_wp
[1115]	1306	IF ( cloud_physics .AND. icloud_scheme == 0 .AND. &
	1307	precipitation ) THEN
[1340]	1308	tqr_m = 0.0_wp
	1309	tnr_m = 0.0_wp
[1053]	1310	ENDIF
	1311	ENDIF
[1340]	1312	IF ( ocean ) tsa_m = 0.0_wp
[181]	1313
[1384]	1314	CALL location_message( 'finished' )
	1315
[1]	1316	ELSE
	1317	!
	1318	!-- Actually this part of the programm should not be reached
[254]	1319	message_string = 'unknown initializing problem'
	1320	CALL message( 'init_3d_model', 'PA0193', 1, 2, 0, 6, 0 )
[1]	1321	ENDIF
	1322
[151]	1323
	1324	IF ( TRIM( initializing_actions ) /= 'read_restart_data' ) THEN
[1]	1325	!
[151]	1326	!-- Initialize old timelevels needed for radiation boundary conditions
	1327	IF ( outflow_l ) THEN
	1328	u_m_l(:,:,:) = u(:,:,1:2)
	1329	v_m_l(:,:,:) = v(:,:,0:1)
	1330	w_m_l(:,:,:) = w(:,:,0:1)
	1331	ENDIF
	1332	IF ( outflow_r ) THEN
	1333	u_m_r(:,:,:) = u(:,:,nx-1:nx)
	1334	v_m_r(:,:,:) = v(:,:,nx-1:nx)
	1335	w_m_r(:,:,:) = w(:,:,nx-1:nx)
	1336	ENDIF
	1337	IF ( outflow_s ) THEN
	1338	u_m_s(:,:,:) = u(:,0:1,:)
	1339	v_m_s(:,:,:) = v(:,1:2,:)
	1340	w_m_s(:,:,:) = w(:,0:1,:)
	1341	ENDIF
	1342	IF ( outflow_n ) THEN
	1343	u_m_n(:,:,:) = u(:,ny-1:ny,:)
	1344	v_m_n(:,:,:) = v(:,ny-1:ny,:)
	1345	w_m_n(:,:,:) = w(:,ny-1:ny,:)
	1346	ENDIF
[667]	1347
[151]	1348	ENDIF
[680]	1349
[667]	1350	!
	1351	!-- Calculate the initial volume flow at the right and north boundary
[709]	1352	IF ( conserve_volume_flow ) THEN
[151]	1353
[767]	1354	IF ( use_prescribed_profile_data ) THEN
[667]	1355
[1340]	1356	volume_flow_initial_l = 0.0_wp
	1357	volume_flow_area_l = 0.0_wp
[732]	1358
[667]	1359	IF ( nxr == nx ) THEN
	1360	DO j = nys, nyn
[709]	1361	DO k = nzb_2d(j,nx)+1, nzt
[667]	1362	volume_flow_initial_l(1) = volume_flow_initial_l(1) + &
[767]	1363	u_init(k) * dzw(k)
	1364	volume_flow_area_l(1) = volume_flow_area_l(1) + dzw(k)
	1365	ENDDO
	1366	ENDDO
	1367	ENDIF
	1368
	1369	IF ( nyn == ny ) THEN
	1370	DO i = nxl, nxr
	1371	DO k = nzb_2d(ny,i)+1, nzt
	1372	volume_flow_initial_l(2) = volume_flow_initial_l(2) + &
	1373	v_init(k) * dzw(k)
	1374	volume_flow_area_l(2) = volume_flow_area_l(2) + dzw(k)
	1375	ENDDO
	1376	ENDDO
	1377	ENDIF
	1378
	1379	#if defined( __parallel )
	1380	CALL MPI_ALLREDUCE( volume_flow_initial_l(1), volume_flow_initial(1),&
	1381	2, MPI_REAL, MPI_SUM, comm2d, ierr )
	1382	CALL MPI_ALLREDUCE( volume_flow_area_l(1), volume_flow_area(1), &
	1383	2, MPI_REAL, MPI_SUM, comm2d, ierr )
	1384
	1385	#else
	1386	volume_flow_initial = volume_flow_initial_l
	1387	volume_flow_area = volume_flow_area_l
	1388	#endif
	1389
	1390	ELSEIF ( TRIM( initializing_actions ) == 'cyclic_fill' ) THEN
	1391
[1340]	1392	volume_flow_initial_l = 0.0_wp
	1393	volume_flow_area_l = 0.0_wp
[767]	1394
	1395	IF ( nxr == nx ) THEN
	1396	DO j = nys, nyn
	1397	DO k = nzb_2d(j,nx)+1, nzt
	1398	volume_flow_initial_l(1) = volume_flow_initial_l(1) + &
[667]	1399	hom_sum(k,1,0) * dzw(k)
	1400	volume_flow_area_l(1) = volume_flow_area_l(1) + dzw(k)
	1401	ENDDO
	1402	ENDDO
	1403	ENDIF
	1404
	1405	IF ( nyn == ny ) THEN
	1406	DO i = nxl, nxr
[709]	1407	DO k = nzb_2d(ny,i)+1, nzt
[667]	1408	volume_flow_initial_l(2) = volume_flow_initial_l(2) + &
[709]	1409	hom_sum(k,2,0) * dzw(k)
[667]	1410	volume_flow_area_l(2) = volume_flow_area_l(2) + dzw(k)
	1411	ENDDO
	1412	ENDDO
	1413	ENDIF
	1414
[732]	1415	#if defined( __parallel )
	1416	CALL MPI_ALLREDUCE( volume_flow_initial_l(1), volume_flow_initial(1),&
	1417	2, MPI_REAL, MPI_SUM, comm2d, ierr )
	1418	CALL MPI_ALLREDUCE( volume_flow_area_l(1), volume_flow_area(1), &
	1419	2, MPI_REAL, MPI_SUM, comm2d, ierr )
	1420
	1421	#else
	1422	volume_flow_initial = volume_flow_initial_l
	1423	volume_flow_area = volume_flow_area_l
	1424	#endif
	1425
[667]	1426	ELSEIF ( TRIM( initializing_actions ) /= 'read_restart_data' ) THEN
	1427
[1340]	1428	volume_flow_initial_l = 0.0_wp
	1429	volume_flow_area_l = 0.0_wp
[732]	1430
[667]	1431	IF ( nxr == nx ) THEN
	1432	DO j = nys, nyn
[709]	1433	DO k = nzb_2d(j,nx)+1, nzt
[667]	1434	volume_flow_initial_l(1) = volume_flow_initial_l(1) + &
[709]	1435	u(k,j,nx) * dzw(k)
[667]	1436	volume_flow_area_l(1) = volume_flow_area_l(1) + dzw(k)
	1437	ENDDO
	1438	ENDDO
	1439	ENDIF
	1440
	1441	IF ( nyn == ny ) THEN
	1442	DO i = nxl, nxr
[709]	1443	DO k = nzb_2d(ny,i)+1, nzt
[667]	1444	volume_flow_initial_l(2) = volume_flow_initial_l(2) + &
	1445	v(k,ny,i) * dzw(k)
	1446	volume_flow_area_l(2) = volume_flow_area_l(2) + dzw(k)
	1447	ENDDO
	1448	ENDDO
	1449	ENDIF
	1450
	1451	#if defined( __parallel )
[732]	1452	CALL MPI_ALLREDUCE( volume_flow_initial_l(1), volume_flow_initial(1),&
	1453	2, MPI_REAL, MPI_SUM, comm2d, ierr )
	1454	CALL MPI_ALLREDUCE( volume_flow_area_l(1), volume_flow_area(1), &
	1455	2, MPI_REAL, MPI_SUM, comm2d, ierr )
[667]	1456
	1457	#else
[732]	1458	volume_flow_initial = volume_flow_initial_l
	1459	volume_flow_area = volume_flow_area_l
[667]	1460	#endif
	1461
[732]	1462	ENDIF
	1463
[151]	1464	!
[709]	1465	!-- In case of 'bulk_velocity' mode, volume_flow_initial is calculated
	1466	!-- from u\|v_bulk instead
[680]	1467	IF ( TRIM( conserve_volume_flow_mode ) == 'bulk_velocity' ) THEN
	1468	volume_flow_initial(1) = u_bulk * volume_flow_area(1)
	1469	volume_flow_initial(2) = v_bulk * volume_flow_area(2)
	1470	ENDIF
[667]	1471
[680]	1472	ENDIF
	1473
[787]	1474	!
	1475	!-- Initialize quantities for special advections schemes
	1476	CALL init_advec
[680]	1477
[667]	1478	!
[680]	1479	!-- Impose random perturbation on the horizontal velocity field and then
	1480	!-- remove the divergences from the velocity field at the initial stage
	1481	IF ( create_disturbances .AND. &
	1482	TRIM( initializing_actions ) /= 'read_restart_data' .AND. &
	1483	TRIM( initializing_actions ) /= 'cyclic_fill' ) THEN
	1484
[1384]	1485	CALL location_message( 'creating initial disturbances' )
[680]	1486	CALL disturb_field( nzb_u_inner, tend, u )
	1487	CALL disturb_field( nzb_v_inner, tend, v )
[1384]	1488	CALL location_message( 'finished' )
	1489
	1490	CALL location_message( 'calling pressure solver' )
[680]	1491	n_sor = nsor_ini
[1221]	1492	!$acc data copyin( d, ddzu, ddzw, nzb_s_inner, nzb_u_inner ) &
	1493	!$acc copyin( nzb_v_inner, nzb_w_inner, p, rflags_s_inner, tend ) &
	1494	!$acc copyin( weight_pres, weight_substep ) &
	1495	!$acc copy( tri, tric, u, v, w )
[680]	1496	CALL pres
[1111]	1497	!$acc end data
[680]	1498	n_sor = nsor
[1384]	1499	CALL location_message( 'finished' )
	1500
[680]	1501	ENDIF
	1502
	1503	!
[138]	1504	!-- Initialization of the leaf area density
[709]	1505	IF ( plant_canopy ) THEN
[138]	1506
	1507	SELECT CASE ( TRIM( canopy_mode ) )
	1508
	1509	CASE( 'block' )
	1510
[667]	1511	DO i = nxlg, nxrg
	1512	DO j = nysg, nyng
[138]	1513	lad_s(:,j,i) = lad(:)
	1514	cdc(:,j,i) = drag_coefficient
[709]	1515	IF ( passive_scalar ) THEN
[153]	1516	sls(:,j,i) = leaf_surface_concentration
	1517	sec(:,j,i) = scalar_exchange_coefficient
	1518	ENDIF
[138]	1519	ENDDO
	1520	ENDDO
	1521
	1522	CASE DEFAULT
	1523
	1524	!
	1525	!-- The DEFAULT case is reached either if the parameter
	1526	!-- canopy mode contains a wrong character string or if the
	1527	!-- user has coded a special case in the user interface.
	1528	!-- There, the subroutine user_init_plant_canopy checks
	1529	!-- which of these two conditions applies.
	1530	CALL user_init_plant_canopy
	1531
	1532	END SELECT
	1533
[667]	1534	CALL exchange_horiz( lad_s, nbgp )
	1535	CALL exchange_horiz( cdc, nbgp )
[138]	1536
[709]	1537	IF ( passive_scalar ) THEN
[667]	1538	CALL exchange_horiz( sls, nbgp )
	1539	CALL exchange_horiz( sec, nbgp )
[153]	1540	ENDIF
	1541
	1542	!
	1543	!-- Sharp boundaries of the plant canopy in horizontal directions
	1544	!-- In vertical direction the interpolation is retained, as the leaf
	1545	!-- area density is initialised by prescribing a vertical profile
	1546	!-- consisting of piecewise linear segments. The upper boundary
	1547	!-- of the plant canopy is now defined by lad_w(pch_index,:,:) = 0.0.
	1548
[138]	1549	DO i = nxl, nxr
	1550	DO j = nys, nyn
	1551	DO k = nzb, nzt+1
[1340]	1552	IF ( lad_s(k,j,i) > 0.0_wp ) THEN
[153]	1553	lad_u(k,j,i) = lad_s(k,j,i)
	1554	lad_u(k,j,i+1) = lad_s(k,j,i)
	1555	lad_v(k,j,i) = lad_s(k,j,i)
	1556	lad_v(k,j+1,i) = lad_s(k,j,i)
	1557	ENDIF
[138]	1558	ENDDO
	1559	DO k = nzb, nzt
[1340]	1560	lad_w(k,j,i) = 0.5_wp * ( lad_s(k+1,j,i) + lad_s(k,j,i) )
[138]	1561	ENDDO
	1562	ENDDO
	1563	ENDDO
	1564
[1340]	1565	lad_w(pch_index,:,:) = 0.0_wp
[153]	1566	lad_w(nzt+1,:,:) = lad_w(nzt,:,:)
[138]	1567
[667]	1568	CALL exchange_horiz( lad_u, nbgp )
	1569	CALL exchange_horiz( lad_v, nbgp )
	1570	CALL exchange_horiz( lad_w, nbgp )
[153]	1571
	1572	!
	1573	!-- Initialisation of the canopy heat source distribution
[1340]	1574	IF ( cthf /= 0.0_wp ) THEN
[153]	1575	!
	1576	!-- Piecewise evaluation of the leaf area index by
	1577	!-- integration of the leaf area density
[1340]	1578	lai(:,:,:) = 0.0_wp
[667]	1579	DO i = nxlg, nxrg
	1580	DO j = nysg, nyng
[153]	1581	DO k = pch_index-1, 0, -1
	1582	lai(k,j,i) = lai(k+1,j,i) + &
[1340]	1583	( 0.5_wp * ( lad_w(k+1,j,i) + &
[153]	1584	lad_s(k+1,j,i) ) * &
	1585	( zw(k+1) - zu(k+1) ) ) + &
[1340]	1586	( 0.5_wp * ( lad_w(k,j,i) + &
[153]	1587	lad_s(k+1,j,i) ) * &
	1588	( zu(k+1) - zw(k) ) )
	1589	ENDDO
	1590	ENDDO
	1591	ENDDO
	1592
	1593	!
	1594	!-- Evaluation of the upward kinematic vertical heat flux within the
	1595	!-- canopy
[667]	1596	DO i = nxlg, nxrg
	1597	DO j = nysg, nyng
[153]	1598	DO k = 0, pch_index
	1599	canopy_heat_flux(k,j,i) = cthf * &
[1340]	1600	exp( -0.6_wp * lai(k,j,i) )
[153]	1601	ENDDO
	1602	ENDDO
	1603	ENDDO
	1604
	1605	!
	1606	!-- The near surface heat flux is derived from the heat flux
	1607	!-- distribution within the canopy
	1608	shf(:,:) = canopy_heat_flux(0,:,:)
	1609
	1610	ENDIF
	1611
[138]	1612	ENDIF
	1613
	1614	!
[1]	1615	!-- If required, initialize dvrp-software
[1340]	1616	IF ( dt_dvrp /= 9999999.9_wp ) CALL init_dvrp
[1]	1617
[96]	1618	IF ( ocean ) THEN
[1]	1619	!
[96]	1620	!-- Initialize quantities needed for the ocean model
	1621	CALL init_ocean
[388]	1622
[96]	1623	ELSE
	1624	!
	1625	!-- Initialize quantities for handling cloud physics
[849]	1626	!-- This routine must be called before lpm_init, because
[96]	1627	!-- otherwise, array pt_d_t, needed in data_output_dvrp (called by
[849]	1628	!-- lpm_init) is not defined.
[96]	1629	CALL init_cloud_physics
	1630	ENDIF
[1]	1631
	1632	!
	1633	!-- If required, initialize particles
[849]	1634	IF ( particle_advection ) CALL lpm_init
[1]	1635
	1636	!
[673]	1637	!-- Initialize the ws-scheme.
	1638	IF ( ws_scheme_sca .OR. ws_scheme_mom ) CALL ws_init
[1]	1639
	1640	!
[709]	1641	!-- Setting weighting factors for calculation of perturbation pressure
	1642	!-- and turbulent quantities from the RK substeps
	1643	IF ( TRIM(timestep_scheme) == 'runge-kutta-3' ) THEN ! for RK3-method
	1644
[1322]	1645	weight_substep(1) = 1._wp/6._wp
	1646	weight_substep(2) = 3._wp/10._wp
	1647	weight_substep(3) = 8._wp/15._wp
[709]	1648
[1322]	1649	weight_pres(1) = 1._wp/3._wp
	1650	weight_pres(2) = 5._wp/12._wp
	1651	weight_pres(3) = 1._wp/4._wp
[709]	1652
	1653	ELSEIF ( TRIM(timestep_scheme) == 'runge-kutta-2' ) THEN ! for RK2-method
	1654
[1322]	1655	weight_substep(1) = 1._wp/2._wp
	1656	weight_substep(2) = 1._wp/2._wp
[673]	1657
[1322]	1658	weight_pres(1) = 1._wp/2._wp
	1659	weight_pres(2) = 1._wp/2._wp
[709]	1660
[1001]	1661	ELSE ! for Euler-method
[709]	1662
[1340]	1663	weight_substep(1) = 1.0_wp
	1664	weight_pres(1) = 1.0_wp
[709]	1665
[673]	1666	ENDIF
	1667
	1668	!
[1]	1669	!-- Initialize Rayleigh damping factors
[1340]	1670	rdf = 0.0_wp
	1671	rdf_sc = 0.0_wp
	1672	IF ( rayleigh_damping_factor /= 0.0_wp ) THEN
[108]	1673	IF ( .NOT. ocean ) THEN
	1674	DO k = nzb+1, nzt
	1675	IF ( zu(k) >= rayleigh_damping_height ) THEN
	1676	rdf(k) = rayleigh_damping_factor * &
[1340]	1677	( SIN( pi * 0.5_wp * ( zu(k) - rayleigh_damping_height ) &
	1678	/ ( zu(nzt) - rayleigh_damping_height ) )&
[1]	1679	)**2
[108]	1680	ENDIF
	1681	ENDDO
	1682	ELSE
	1683	DO k = nzt, nzb+1, -1
	1684	IF ( zu(k) <= rayleigh_damping_height ) THEN
	1685	rdf(k) = rayleigh_damping_factor * &
[1340]	1686	( SIN( pi * 0.5_wp * ( rayleigh_damping_height - zu(k) ) &
	1687	/ ( rayleigh_damping_height - zu(nzb+1)))&
[108]	1688	)**2
	1689	ENDIF
	1690	ENDDO
	1691	ENDIF
[1]	1692	ENDIF
[785]	1693	IF ( scalar_rayleigh_damping ) rdf_sc = rdf
[1]	1694
	1695	!
[240]	1696	!-- Initialize the starting level and the vertical smoothing factor used for
	1697	!-- the external pressure gradient
[1340]	1698	dp_smooth_factor = 1.0_wp
[240]	1699	IF ( dp_external ) THEN
	1700	!
	1701	!-- Set the starting level dp_level_ind_b only if it has not been set before
	1702	!-- (e.g. in init_grid).
	1703	IF ( dp_level_ind_b == 0 ) THEN
	1704	ind_array = MINLOC( ABS( dp_level_b - zu ) )
	1705	dp_level_ind_b = ind_array(1) - 1 + nzb
	1706	! MINLOC uses lower array bound 1
	1707	ENDIF
	1708	IF ( dp_smooth ) THEN
[1340]	1709	dp_smooth_factor(:dp_level_ind_b) = 0.0_wp
[240]	1710	DO k = dp_level_ind_b+1, nzt
[1340]	1711	dp_smooth_factor(k) = 0.5_wp * ( 1.0_wp + SIN( pi * &
	1712	( REAL( k - dp_level_ind_b, KIND=wp ) / &
	1713	REAL( nzt - dp_level_ind_b, KIND=wp ) - 0.5_wp ) ) )
[240]	1714	ENDDO
	1715	ENDIF
	1716	ENDIF
	1717
	1718	!
[978]	1719	!-- Initialize damping zone for the potential temperature in case of
	1720	!-- non-cyclic lateral boundaries. The damping zone has the maximum value
	1721	!-- at the inflow boundary and decreases to zero at pt_damping_width.
[1340]	1722	ptdf_x = 0.0_wp
	1723	ptdf_y = 0.0_wp
[1159]	1724	IF ( bc_lr_dirrad ) THEN
[996]	1725	DO i = nxl, nxr
[978]	1726	IF ( ( i * dx ) < pt_damping_width ) THEN
[1340]	1727	ptdf_x(i) = pt_damping_factor * ( SIN( pi * 0.5_wp * &
	1728	REAL( pt_damping_width - i * dx, KIND=wp ) / ( &
	1729	REAL( pt_damping_width, KIND=wp ) ) ) )**2
[73]	1730	ENDIF
	1731	ENDDO
[1159]	1732	ELSEIF ( bc_lr_raddir ) THEN
[996]	1733	DO i = nxl, nxr
[978]	1734	IF ( ( i * dx ) > ( nx * dx - pt_damping_width ) ) THEN
[1322]	1735	ptdf_x(i) = pt_damping_factor * &
[1340]	1736	SIN( pi * 0.5_wp * &
	1737	( ( i - nx ) * dx + pt_damping_width ) / &
	1738	REAL( pt_damping_width, KIND=wp ) )**2
[73]	1739	ENDIF
[978]	1740	ENDDO
[1159]	1741	ELSEIF ( bc_ns_dirrad ) THEN
[996]	1742	DO j = nys, nyn
[978]	1743	IF ( ( j * dy ) > ( ny * dy - pt_damping_width ) ) THEN
[1322]	1744	ptdf_y(j) = pt_damping_factor * &
[1340]	1745	SIN( pi * 0.5_wp * &
	1746	( ( j - ny ) * dy + pt_damping_width ) / &
	1747	REAL( pt_damping_width, KIND=wp ) )**2
[1]	1748	ENDIF
[978]	1749	ENDDO
[1159]	1750	ELSEIF ( bc_ns_raddir ) THEN
[996]	1751	DO j = nys, nyn
[978]	1752	IF ( ( j * dy ) < pt_damping_width ) THEN
[1322]	1753	ptdf_y(j) = pt_damping_factor * &
[1340]	1754	SIN( pi * 0.5_wp * &
	1755	( pt_damping_width - j * dy ) / &
	1756	REAL( pt_damping_width, KIND=wp ) )**2
[1]	1757	ENDIF
[73]	1758	ENDDO
[1]	1759	ENDIF
	1760
	1761	!
[709]	1762	!-- Initialize local summation arrays for routine flow_statistics.
	1763	!-- This is necessary because they may not yet have been initialized when they
	1764	!-- are called from flow_statistics (or - depending on the chosen model run -
	1765	!-- are never initialized)
[1340]	1766	sums_divnew_l = 0.0_wp
	1767	sums_divold_l = 0.0_wp
	1768	sums_l_l = 0.0_wp
	1769	sums_up_fraction_l = 0.0_wp
	1770	sums_wsts_bc_l = 0.0_wp
[1]	1771
	1772	!
	1773	!-- Pre-set masks for regional statistics. Default is the total model domain.
[1015]	1774	!-- Ghost points are excluded because counting values at the ghost boundaries
	1775	!-- would bias the statistics
[1340]	1776	rmask = 1.0_wp
	1777	rmask(:,nxlg:nxl-1,:) = 0.0_wp; rmask(:,nxr+1:nxrg,:) = 0.0_wp
	1778	rmask(nysg:nys-1,:,:) = 0.0_wp; rmask(nyn+1:nyng,:,:) = 0.0_wp
[1]	1779
	1780	!
[51]	1781	!-- User-defined initializing actions. Check afterwards, if maximum number
[709]	1782	!-- of allowed timeseries is exceeded
[1]	1783	CALL user_init
	1784
[51]	1785	IF ( dots_num > dots_max ) THEN
[254]	1786	WRITE( message_string, * ) 'number of time series quantities exceeds', &
[274]	1787	' its maximum of dots_max = ', dots_max, &
[254]	1788	' &Please increase dots_max in modules.f90.'
	1789	CALL message( 'init_3d_model', 'PA0194', 1, 2, 0, 6, 0 )
[51]	1790	ENDIF
	1791
[1]	1792	!
	1793	!-- Input binary data file is not needed anymore. This line must be placed
	1794	!-- after call of user_init!
	1795	CALL close_file( 13 )
	1796
	1797	!
	1798	!-- Compute total sum of active mask grid points
	1799	!-- ngp_2dh: number of grid points of a horizontal cross section through the
	1800	!-- total domain
	1801	!-- ngp_3d: number of grid points of the total domain
[132]	1802	ngp_2dh_outer_l = 0
	1803	ngp_2dh_outer = 0
	1804	ngp_2dh_s_inner_l = 0
	1805	ngp_2dh_s_inner = 0
	1806	ngp_2dh_l = 0
	1807	ngp_2dh = 0
[1340]	1808	ngp_3d_inner_l = 0.0_wp
[132]	1809	ngp_3d_inner = 0
	1810	ngp_3d = 0
	1811	ngp_sums = ( nz + 2 ) * ( pr_palm + max_pr_user )
[1]	1812
	1813	DO sr = 0, statistic_regions
	1814	DO i = nxl, nxr
	1815	DO j = nys, nyn
[1340]	1816	IF ( rmask(j,i,sr) == 1.0_wp ) THEN
[1]	1817	!
	1818	!-- All xy-grid points
	1819	ngp_2dh_l(sr) = ngp_2dh_l(sr) + 1
	1820	!
	1821	!-- xy-grid points above topography
	1822	DO k = nzb_s_outer(j,i), nz + 1
	1823	ngp_2dh_outer_l(k,sr) = ngp_2dh_outer_l(k,sr) + 1
	1824	ENDDO
[132]	1825	DO k = nzb_s_inner(j,i), nz + 1
	1826	ngp_2dh_s_inner_l(k,sr) = ngp_2dh_s_inner_l(k,sr) + 1
	1827	ENDDO
[1]	1828	!
	1829	!-- All grid points of the total domain above topography
	1830	ngp_3d_inner_l(sr) = ngp_3d_inner_l(sr) + &
	1831	( nz - nzb_s_inner(j,i) + 2 )
	1832	ENDIF
	1833	ENDDO
	1834	ENDDO
	1835	ENDDO
	1836
	1837	sr = statistic_regions + 1
	1838	#if defined( __parallel )
[622]	1839	IF ( collective_wait ) CALL MPI_BARRIER( comm2d, ierr )
[485]	1840	CALL MPI_ALLREDUCE( ngp_2dh_l(0), ngp_2dh(0), sr, MPI_INTEGER, MPI_SUM, &
[1]	1841	comm2d, ierr )
[622]	1842	IF ( collective_wait ) CALL MPI_BARRIER( comm2d, ierr )
[485]	1843	CALL MPI_ALLREDUCE( ngp_2dh_outer_l(0,0), ngp_2dh_outer(0,0), (nz+2)*sr, &
[1]	1844	MPI_INTEGER, MPI_SUM, comm2d, ierr )
[622]	1845	IF ( collective_wait ) CALL MPI_BARRIER( comm2d, ierr )
[485]	1846	CALL MPI_ALLREDUCE( ngp_2dh_s_inner_l(0,0), ngp_2dh_s_inner(0,0), &
[132]	1847	(nz+2)*sr, MPI_INTEGER, MPI_SUM, comm2d, ierr )
[622]	1848	IF ( collective_wait ) CALL MPI_BARRIER( comm2d, ierr )
[485]	1849	CALL MPI_ALLREDUCE( ngp_3d_inner_l(0), ngp_3d_inner_tmp(0), sr, MPI_REAL, &
[1]	1850	MPI_SUM, comm2d, ierr )
[485]	1851	ngp_3d_inner = INT( ngp_3d_inner_tmp, KIND = SELECTED_INT_KIND( 18 ) )
[1]	1852	#else
[132]	1853	ngp_2dh = ngp_2dh_l
	1854	ngp_2dh_outer = ngp_2dh_outer_l
	1855	ngp_2dh_s_inner = ngp_2dh_s_inner_l
[485]	1856	ngp_3d_inner = INT( ngp_3d_inner_l, KIND = SELECTED_INT_KIND( 18 ) )
[1]	1857	#endif
	1858
[560]	1859	ngp_3d = INT ( ngp_2dh, KIND = SELECTED_INT_KIND( 18 ) ) * &
	1860	INT ( (nz + 2 ), KIND = SELECTED_INT_KIND( 18 ) )
[1]	1861
	1862	!
	1863	!-- Set a lower limit of 1 in order to avoid zero divisions in flow_statistics,
	1864	!-- buoyancy, etc. A zero value will occur for cases where all grid points of
	1865	!-- the respective subdomain lie below the surface topography
[667]	1866	ngp_2dh_outer = MAX( 1, ngp_2dh_outer(:,:) )
[631]	1867	ngp_3d_inner = MAX( INT(1, KIND = SELECTED_INT_KIND( 18 )), &
	1868	ngp_3d_inner(:) )
[667]	1869	ngp_2dh_s_inner = MAX( 1, ngp_2dh_s_inner(:,:) )
[1]	1870
[485]	1871	DEALLOCATE( ngp_2dh_l, ngp_2dh_outer_l, ngp_3d_inner_l, ngp_3d_inner_tmp )
[1]	1872
[1384]	1873	CALL location_message( 'leaving init_3d_model' )
[1]	1874
	1875	END SUBROUTINE init_3d_model

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