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source: palm/trunk/SOURCE/data_output_3d.f90 @ 4159

Last change on this file since 4159 was 4155, checked in by raasch, 5 years ago
bugfix for 3d-output in serial mode (ghost points must not be written)
Property svn:keywords set to `Id`
File size: 31.8 KB

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1	!> @file data_output_3d.f90
2	!------------------------------------------------------------------------------!
3	! This file is part of the PALM model system.
4	!
5	! PALM is free software: you can redistribute it and/or modify it under the
6	! terms of the GNU General Public License as published by the Free Software
7	! Foundation, either version 3 of the License, or (at your option) any later
8	! version.
9	!
10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
13	!
14	! You should have received a copy of the GNU General Public License along with
15	! PALM. If not, see <http://www.gnu.org/licenses/>.
16	!
17	! Copyright 1997-2019 Leibniz Universitaet Hannover
18	!------------------------------------------------------------------------------!
19	!
20	! Current revisions:
21	! ------------------
22	!
23	!
24	! Former revisions:
25	! -----------------
26	! $Id: data_output_3d.f90 4155 2019-08-14 06:25:18Z suehring $
27	! bugfix for 3d-output in serial mode (ghost points must not be written)
28	!
29	! 4127 2019-07-30 14:47:10Z suehring
30	! Adjustment for top boundary index for plant-canopy model outputs
31	! (merge from branch resler)
32	!
33	! 4048 2019-06-21 21:00:21Z knoop
34	! Moved tcm_data_output_3d to module_interface
35	!
36	! 4039 2019-06-18 10:32:41Z suehring
37	! modularize diagnostic output
38	!
39	! 3994 2019-05-22 18:08:09Z suehring
40	! output of turbulence intensity added
41	!
42	! 3987 2019-05-22 09:52:13Z kanani
43	! Introduce alternative switch for debug output during timestepping
44	!
45	! 3885 2019-04-11 11:29:34Z kanani
46	! Changes related to global restructuring of location messages and introduction
47	! of additional debug messages
48	!
49	! 3814 2019-03-26 08:40:31Z pavelkrc
50	! unused variables removed
51	!
52	! 3655 2019-01-07 16:51:22Z knoop
53	! Bugfix: use time_since_reference_point instead of simulated_time (relevant
54	! when using wall/soil spinup)
55	!
56	! 3637 2018-12-20 01:51:36Z knoop
57	! Implementation of the PALM module interface
58	!
59	! 3589 2018-11-30 15:09:51Z suehring
60	! Move the control parameter "salsa" from salsa_mod to control_parameters
61	! (M. Kurppa)
62	!
63	! 3582 2018-11-29 19:16:36Z suehring
64	! add variable description; rename variable 'if' into 'ivar'
65	!
66	! 3525 2018-11-14 16:06:14Z kanani
67	! Changes related to clean-up of biometeorology (dom_dwd_user)
68	!
69	! 3467 2018-10-30 19:05:21Z suehring
70	! Implementation of a new aerosol module salsa.
71	!
72	! 3448 2018-10-29 18:14:31Z kanani
73	! Adjustment of biometeorology calls
74	!
75	! 3421 2018-10-24 18:39:32Z gronemeier
76	! Renamed output variables
77	!
78	! 3419 2018-10-24 17:27:31Z gronemeier
79	! bugfix: nx, ny are required in non-parallel case
80	!
81	! 3337 2018-10-12 15:17:09Z kanani
82	! (from branch resler)
83	! Add Biometeorology
84	!
85	! 3294 2018-10-01 02:37:10Z raasch
86	! changes concerning modularization of ocean option
87	!
88	! 3274 2018-09-24 15:42:55Z knoop
89	! Modularization of all bulk cloud physics code components
90	!
91	! 3241 2018-09-12 15:02:00Z raasch
92	! unused variables and format statements removed
93	!
94	! 3049 2018-05-29 13:52:36Z Giersch
95	! Error messages revised
96	!
97	! 3045 2018-05-28 07:55:41Z Giersch
98	! Error message revised
99	!
100	! 3014 2018-05-09 08:42:38Z maronga
101	! Added nzb_do and nzt_do for some modules for 3d output
102	!
103	! 3004 2018-04-27 12:33:25Z Giersch
104	! Allocation checks implemented (averaged data will be assigned to fill values
105	! if no allocation happened so far)
106	!
107	! 2967 2018-04-13 11:22:08Z raasch
108	! bugfix: missing parallel cpp-directives added
109	!
110	! 2817 2018-02-19 16:32:21Z knoop
111	! Preliminary gust module interface implemented
112	!
113	! 2766 2018-01-22 17:17:47Z kanani
114	! Removed preprocessor directive __chem
115	!
116	! 2756 2018-01-16 18:11:14Z suehring
117	! Fill values for 3D output of chemical species introduced.
118	!
119	! 2746 2018-01-15 12:06:04Z suehring
120	! Move flag plant canopy to modules
121	!
122	! 2718 2018-01-02 08:49:38Z maronga
123	! Corrected "Former revisions" section
124	!
125	! 2696 2017-12-14 17:12:51Z kanani
126	! Change in file header (GPL part)
127	! Implementation of turbulence_closure_mod (TG)
128	! Implementation of chemistry module (FK)
129	! Set fill values at topography grid points or e.g. non-natural-type surface
130	! in case of LSM output (MS)
131	!
132	! 2512 2017-10-04 08:26:59Z raasch
133	! upper bounds of 3d output changed from nx+1,ny+1 to nx,ny
134	! no output of ghost layer data
135	!
136	! 2292 2017-06-20 09:51:42Z schwenkel
137	! Implementation of new microphysic scheme: cloud_scheme = 'morrison'
138	! includes two more prognostic equations for cloud drop concentration (nc)
139	! and cloud water content (qc).
140	!
141	! 2233 2017-05-30 18:08:54Z suehring
142	!
143	! 2232 2017-05-30 17:47:52Z suehring
144	! Adjustments to new topography concept
145	!
146	! 2209 2017-04-19 09:34:46Z kanani
147	! Added plant canopy model output
148	!
149	! 2031 2016-10-21 15:11:58Z knoop
150	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
151	!
152	! 2011 2016-09-19 17:29:57Z kanani
153	! Flag urban_surface is now defined in module control_parameters,
154	! changed prefix for urban surface model output to "usm_",
155	! introduced control parameter varnamelength for LEN of trimvar.
156	!
157	! 2007 2016-08-24 15:47:17Z kanani
158	! Added support for new urban surface model (temporary modifications of
159	! SELECT CASE ( ) necessary, see variable trimvar)
160	!
161	! 2000 2016-08-20 18:09:15Z knoop
162	! Forced header and separation lines into 80 columns
163	!
164	! 1980 2016-07-29 15:51:57Z suehring
165	! Bugfix, in order to steer user-defined output, setting flag found explicitly
166	! to .F.
167	!
168	! 1976 2016-07-27 13:28:04Z maronga
169	! Output of radiation quantities is now done directly in the respective module
170	!
171	! 1972 2016-07-26 07:52:02Z maronga
172	! Output of land surface quantities is now done directly in the respective module.
173	! Unnecessary directive __parallel removed.
174	!
175	! 1960 2016-07-12 16:34:24Z suehring
176	! Scalar surface flux added
177	!
178	! 1849 2016-04-08 11:33:18Z hoffmann
179	! prr moved to arrays_3d
180	!
181	! 1822 2016-04-07 07:49:42Z hoffmann
182	! prr vertical dimensions set to nzb_do to nzt_do. Unused variables deleted.
183	!
184	! 1808 2016-04-05 19:44:00Z raasch
185	! test output removed
186	!
187	! 1783 2016-03-06 18:36:17Z raasch
188	! name change of netcdf routines and module + related changes
189	!
190	! 1745 2016-02-05 13:06:51Z gronemeier
191	! Bugfix: test if time axis limit exceeds moved to point after call of check_open
192	!
193	! 1691 2015-10-26 16:17:44Z maronga
194	! Added output of radiative heating rates for RRTMG
195	!
196	! 1682 2015-10-07 23:56:08Z knoop
197	! Code annotations made doxygen readable
198	!
199	! 1585 2015-04-30 07:05:52Z maronga
200	! Added support for RRTMG
201	!
202	! 1551 2015-03-03 14:18:16Z maronga
203	! Added suppport for land surface model and radiation model output. In the course
204	! of this action, the limits for vertical loops have been changed (from nzb and
205	! nzt+1 to nzb_do and nzt_do, respectively in order to allow soil model output).
206	! Moreover, a new vertical grid zs was introduced.
207	!
208	! 1359 2014-04-11 17:15:14Z hoffmann
209	! New particle structure integrated.
210	!
211	! 1353 2014-04-08 15:21:23Z heinze
212	! REAL constants provided with KIND-attribute
213	!
214	! 1327 2014-03-21 11:00:16Z raasch
215	! parts concerning avs output removed,
216	! -netcdf output queries
217	!
218	! 1320 2014-03-20 08:40:49Z raasch
219	! ONLY-attribute added to USE-statements,
220	! kind-parameters added to all INTEGER and REAL declaration statements,
221	! kinds are defined in new module kinds,
222	! old module precision_kind is removed,
223	! revision history before 2012 removed,
224	! comment fields (!:) to be used for variable explanations added to
225	! all variable declaration statements
226	!
227	! 1318 2014-03-17 13:35:16Z raasch
228	! barrier argument removed from cpu_log,
229	! module interfaces removed
230	!
231	! 1308 2014-03-13 14:58:42Z fricke
232	! Check, if the limit of the time dimension is exceeded for parallel output
233	! To increase the performance for parallel output, the following is done:
234	! - Update of time axis is only done by PE0
235	!
236	! 1244 2013-10-31 08:16:56Z raasch
237	! Bugfix for index bounds in case of 3d-parallel output
238	!
239	! 1115 2013-03-26 18:16:16Z hoffmann
240	! ql is calculated by calc_liquid_water_content
241	!
242	! 1106 2013-03-04 05:31:38Z raasch
243	! array_kind renamed precision_kind
244	!
245	! 1076 2012-12-05 08:30:18Z hoffmann
246	! Bugfix in output of ql
247	!
248	! 1053 2012-11-13 17:11:03Z hoffmann
249	! +nr, qr, prr, qc and averaged quantities
250	!
251	! 1036 2012-10-22 13:43:42Z raasch
252	! code put under GPL (PALM 3.9)
253	!
254	! 1031 2012-10-19 14:35:30Z raasch
255	! netCDF4 without parallel file support implemented
256	!
257	! 1007 2012-09-19 14:30:36Z franke
258	! Bugfix: missing calculation of ql_vp added
259	!
260	! Revision 1.1 1997/09/03 06:29:36 raasch
261	! Initial revision
262	!
263	!
264	! Description:
265	! ------------
266	!> Output of the 3D-arrays in netCDF and/or AVS format.
267	!------------------------------------------------------------------------------!
268	SUBROUTINE data_output_3d( av )
269
270
271	USE arrays_3d, &
272	ONLY: d_exner, e, p, pt, q, ql, ql_c, ql_v, s, tend, u, v, vpt, w
273
274	USE averaging
275
276	USE basic_constants_and_equations_mod, &
277	ONLY: lv_d_cp
278
279	USE bulk_cloud_model_mod, &
280	ONLY: bulk_cloud_model
281
282	USE control_parameters, &
283	ONLY: debug_output_timestep, &
284	do3d, do3d_no, do3d_time_count, io_blocks, io_group, &
285	land_surface, message_string, ntdim_3d, nz_do3d, plant_canopy, &
286	psolver, time_since_reference_point, urban_surface, &
287	varnamelength
288
289	USE cpulog, &
290	ONLY: log_point, cpu_log
291
292	#if defined( __parallel )
293	USE indices, &
294	ONLY: nbgp, nxl, nxlg, nxr, nxrg, nyn, nyng, nys, nysg, nzb, nzt, &
295	wall_flags_0
296	#else
297	USE indices, &
298	ONLY: nbgp, nx, nxl, nxlg, nxr, nxrg, ny, nyn, nyng, nys, nysg, nzb, &
299	nzt, wall_flags_0
300	#endif
301
302	USE kinds
303
304	USE land_surface_model_mod, &
305	ONLY: lsm_data_output_3d, nzb_soil, nzt_soil
306
307	USE module_interface, &
308	ONLY: module_interface_data_output_3d
309
310	#if defined( __netcdf )
311	USE NETCDF
312	#endif
313
314	USE netcdf_interface, &
315	ONLY: fill_value, id_set_3d, id_var_do3d, id_var_time_3d, nc_stat, &
316	netcdf_data_format, netcdf_handle_error
317
318	USE particle_attributes, &
319	ONLY: grid_particles, number_of_particles, particles, &
320	particle_advection_start, prt_count
321
322	USE pegrid
323
324	USE plant_canopy_model_mod, &
325	ONLY: pch_index
326
327	USE radiation_model_mod, &
328	ONLY: nz_urban_b, nz_urban_t
329
330	USE urban_surface_mod, &
331	ONLY: usm_data_output_3d
332
333
334	IMPLICIT NONE
335
336	INTEGER(iwp) :: av !< flag for (non-)average output
337	INTEGER(iwp) :: flag_nr !< number of masking flag
338	INTEGER(iwp) :: i !< loop index
339	INTEGER(iwp) :: ivar !< variable index
340	INTEGER(iwp) :: j !< loop index
341	INTEGER(iwp) :: k !< loop index
342	INTEGER(iwp) :: n !< loop index
343	INTEGER(iwp) :: nzb_do !< vertical lower limit for data output
344	INTEGER(iwp) :: nzt_do !< vertical upper limit for data output
345
346	LOGICAL :: found !< true if output variable was found
347	LOGICAL :: resorted !< true if variable is resorted
348
349	REAL(wp) :: mean_r !< mean particle radius
350	REAL(wp) :: s_r2 !< sum( particle-radius**2 )
351	REAL(wp) :: s_r3 !< sum( particle-radius**3 )
352
353	REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !< output array
354
355	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !< pointer to array which shall be output
356
357	CHARACTER (LEN=varnamelength) :: trimvar !< TRIM of output-variable string
358
359	!
360	!-- Return, if nothing to output
361	IF ( do3d_no(av) == 0 ) RETURN
362
363	IF ( debug_output_timestep ) CALL debug_message( 'data_output_3d', 'start' )
364
365	CALL cpu_log (log_point(14),'data_output_3d','start')
366
367	!
368	!-- Open output file.
369	!-- For classic or 64bit netCDF output on more than one PE, each PE opens its
370	!-- own file and writes the data of its subdomain in binary format. After the
371	!-- run, these files are combined to one NetCDF file by combine_plot_fields.
372	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
373	IF ( netcdf_data_format < 5 ) THEN
374	#if defined( __parallel )
375	CALL check_open( 30 )
376	#endif
377	IF ( myid == 0 ) CALL check_open( 106+av*10 )
378	ELSE
379	CALL check_open( 106+av*10 )
380	ENDIF
381
382	!
383	!-- For parallel netcdf output the time axis must be limited. Return, if this
384	!-- limit is exceeded. This could be the case, if the simulated time exceeds
385	!-- the given end time by the length of the given output interval.
386	IF ( netcdf_data_format > 4 ) THEN
387	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
388	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
389	time_since_reference_point, 's because the maximum ', &
390	'number of output time levels is ', &
391	'exceeded.'
392	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
393	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
394	RETURN
395	ENDIF
396	ENDIF
397
398	!
399	!-- Update the netCDF time axis
400	!-- In case of parallel output, this is only done by PE0 to increase the
401	!-- performance.
402	#if defined( __netcdf )
403	do3d_time_count(av) = do3d_time_count(av) + 1
404	IF ( myid == 0 ) THEN
405	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
406	(/ time_since_reference_point /), &
407	start = (/ do3d_time_count(av) /), &
408	count = (/ 1 /) )
409	CALL netcdf_handle_error( 'data_output_3d', 376 )
410	ENDIF
411	#endif
412
413	!
414	!-- Loop over all variables to be written.
415	ivar = 1
416
417	DO WHILE ( do3d(av,ivar)(1:1) /= ' ' )
418
419	!
420	!-- Initiate found flag and resorting flag
421	found = .FALSE.
422	resorted = .FALSE.
423	trimvar = TRIM( do3d(av,ivar) )
424
425	!
426	!-- Temporary solution to account for data output within the new urban
427	!-- surface model (urban_surface_mod.f90), see also SELECT CASE ( trimvar ).
428	!-- Store the array chosen on the temporary array.
429	nzb_do = nzb
430	!
431	!-- Set top index for 3D output. Note in case of plant-canopy model
432	!-- these index is determined by pch_index.
433	IF ( plant_canopy .AND. trimvar(1:4) == 'pcm_' ) THEN
434	nzt_do = pch_index
435	ELSE
436	nzt_do = nz_do3d
437	ENDIF
438
439	!
440	!-- Allocate a temporary array with the desired output dimensions.
441	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
442	!
443	!-- Before each output, set array local_pf to fill value
444	local_pf = fill_value
445	!
446	!-- Set masking flag for topography for not resorted arrays
447	flag_nr = 0
448
449	SELECT CASE ( trimvar )
450
451	CASE ( 'e' )
452	IF ( av == 0 ) THEN
453	to_be_resorted => e
454	ELSE
455	IF ( .NOT. ALLOCATED( e_av ) ) THEN
456	ALLOCATE( e_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
457	e_av = REAL( fill_value, KIND = wp )
458	ENDIF
459	to_be_resorted => e_av
460	ENDIF
461
462	CASE ( 'thetal' )
463	IF ( av == 0 ) THEN
464	to_be_resorted => pt
465	ELSE
466	IF ( .NOT. ALLOCATED( lpt_av ) ) THEN
467	ALLOCATE( lpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
468	lpt_av = REAL( fill_value, KIND = wp )
469	ENDIF
470	to_be_resorted => lpt_av
471	ENDIF
472
473	CASE ( 'p' )
474	IF ( av == 0 ) THEN
475	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
476	to_be_resorted => p
477	ELSE
478	IF ( .NOT. ALLOCATED( p_av ) ) THEN
479	ALLOCATE( p_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
480	p_av = REAL( fill_value, KIND = wp )
481	ENDIF
482	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
483	to_be_resorted => p_av
484	ENDIF
485
486	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
487	IF ( av == 0 ) THEN
488	IF ( time_since_reference_point >= particle_advection_start ) THEN
489	tend = prt_count
490	ELSE
491	tend = 0.0_wp
492	ENDIF
493	DO i = nxl, nxr
494	DO j = nys, nyn
495	DO k = nzb_do, nzt_do
496	local_pf(i,j,k) = tend(k,j,i)
497	ENDDO
498	ENDDO
499	ENDDO
500	resorted = .TRUE.
501	ELSE
502	IF ( .NOT. ALLOCATED( pc_av ) ) THEN
503	ALLOCATE( pc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
504	pc_av = REAL( fill_value, KIND = wp )
505	ENDIF
506	to_be_resorted => pc_av
507	ENDIF
508
509	CASE ( 'pr' ) ! mean particle radius (effective radius)
510	IF ( av == 0 ) THEN
511	IF ( time_since_reference_point >= particle_advection_start ) THEN
512	DO i = nxl, nxr
513	DO j = nys, nyn
514	DO k = nzb_do, nzt_do
515	number_of_particles = prt_count(k,j,i)
516	IF (number_of_particles <= 0) CYCLE
517	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
518	s_r2 = 0.0_wp
519	s_r3 = 0.0_wp
520	DO n = 1, number_of_particles
521	IF ( particles(n)%particle_mask ) THEN
522	s_r2 = s_r2 + particles(n)%radius*2 &
523	particles(n)%weight_factor
524	s_r3 = s_r3 + particles(n)%radius*3 &
525	particles(n)%weight_factor
526	ENDIF
527	ENDDO
528	IF ( s_r2 > 0.0_wp ) THEN
529	mean_r = s_r3 / s_r2
530	ELSE
531	mean_r = 0.0_wp
532	ENDIF
533	tend(k,j,i) = mean_r
534	ENDDO
535	ENDDO
536	ENDDO
537	ELSE
538	tend = 0.0_wp
539	ENDIF
540	DO i = nxl, nxr
541	DO j = nys, nyn
542	DO k = nzb_do, nzt_do
543	local_pf(i,j,k) = tend(k,j,i)
544	ENDDO
545	ENDDO
546	ENDDO
547	resorted = .TRUE.
548	ELSE
549	IF ( .NOT. ALLOCATED( pr_av ) ) THEN
550	ALLOCATE( pr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
551	pr_av = REAL( fill_value, KIND = wp )
552	ENDIF
553	to_be_resorted => pr_av
554	ENDIF
555
556	CASE ( 'theta' )
557	IF ( av == 0 ) THEN
558	IF ( .NOT. bulk_cloud_model ) THEN
559	to_be_resorted => pt
560	ELSE
561	DO i = nxl, nxr
562	DO j = nys, nyn
563	DO k = nzb_do, nzt_do
564	local_pf(i,j,k) = pt(k,j,i) + lv_d_cp * &
565	d_exner(k) * &
566	ql(k,j,i)
567	ENDDO
568	ENDDO
569	ENDDO
570	resorted = .TRUE.
571	ENDIF
572	ELSE
573	IF ( .NOT. ALLOCATED( pt_av ) ) THEN
574	ALLOCATE( pt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
575	pt_av = REAL( fill_value, KIND = wp )
576	ENDIF
577	to_be_resorted => pt_av
578	ENDIF
579
580	CASE ( 'q' )
581	IF ( av == 0 ) THEN
582	to_be_resorted => q
583	ELSE
584	IF ( .NOT. ALLOCATED( q_av ) ) THEN
585	ALLOCATE( q_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
586	q_av = REAL( fill_value, KIND = wp )
587	ENDIF
588	to_be_resorted => q_av
589	ENDIF
590
591	CASE ( 'ql' )
592	IF ( av == 0 ) THEN
593	to_be_resorted => ql
594	ELSE
595	IF ( .NOT. ALLOCATED( ql_av ) ) THEN
596	ALLOCATE( ql_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
597	ql_av = REAL( fill_value, KIND = wp )
598	ENDIF
599	to_be_resorted => ql_av
600	ENDIF
601
602	CASE ( 'ql_c' )
603	IF ( av == 0 ) THEN
604	to_be_resorted => ql_c
605	ELSE
606	IF ( .NOT. ALLOCATED( ql_c_av ) ) THEN
607	ALLOCATE( ql_c_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
608	ql_c_av = REAL( fill_value, KIND = wp )
609	ENDIF
610	to_be_resorted => ql_c_av
611	ENDIF
612
613	CASE ( 'ql_v' )
614	IF ( av == 0 ) THEN
615	to_be_resorted => ql_v
616	ELSE
617	IF ( .NOT. ALLOCATED( ql_v_av ) ) THEN
618	ALLOCATE( ql_v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
619	ql_v_av = REAL( fill_value, KIND = wp )
620	ENDIF
621	to_be_resorted => ql_v_av
622	ENDIF
623
624	CASE ( 'ql_vp' )
625	IF ( av == 0 ) THEN
626	IF ( time_since_reference_point >= particle_advection_start ) THEN
627	DO i = nxl, nxr
628	DO j = nys, nyn
629	DO k = nzb_do, nzt_do
630	number_of_particles = prt_count(k,j,i)
631	IF (number_of_particles <= 0) CYCLE
632	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
633	DO n = 1, number_of_particles
634	IF ( particles(n)%particle_mask ) THEN
635	tend(k,j,i) = tend(k,j,i) + &
636	particles(n)%weight_factor / &
637	prt_count(k,j,i)
638	ENDIF
639	ENDDO
640	ENDDO
641	ENDDO
642	ENDDO
643	ELSE
644	tend = 0.0_wp
645	ENDIF
646	DO i = nxl, nxr
647	DO j = nys, nyn
648	DO k = nzb_do, nzt_do
649	local_pf(i,j,k) = tend(k,j,i)
650	ENDDO
651	ENDDO
652	ENDDO
653	resorted = .TRUE.
654	ELSE
655	IF ( .NOT. ALLOCATED( ql_vp_av ) ) THEN
656	ALLOCATE( ql_vp_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
657	ql_vp_av = REAL( fill_value, KIND = wp )
658	ENDIF
659	to_be_resorted => ql_vp_av
660	ENDIF
661
662	CASE ( 'qv' )
663	IF ( av == 0 ) THEN
664	DO i = nxl, nxr
665	DO j = nys, nyn
666	DO k = nzb_do, nzt_do
667	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
668	ENDDO
669	ENDDO
670	ENDDO
671	resorted = .TRUE.
672	ELSE
673	IF ( .NOT. ALLOCATED( qv_av ) ) THEN
674	ALLOCATE( qv_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
675	qv_av = REAL( fill_value, KIND = wp )
676	ENDIF
677	to_be_resorted => qv_av
678	ENDIF
679
680	CASE ( 's' )
681	IF ( av == 0 ) THEN
682	to_be_resorted => s
683	ELSE
684	IF ( .NOT. ALLOCATED( s_av ) ) THEN
685	ALLOCATE( s_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
686	s_av = REAL( fill_value, KIND = wp )
687	ENDIF
688	to_be_resorted => s_av
689	ENDIF
690
691	CASE ( 'u' )
692	flag_nr = 1
693	IF ( av == 0 ) THEN
694	to_be_resorted => u
695	ELSE
696	IF ( .NOT. ALLOCATED( u_av ) ) THEN
697	ALLOCATE( u_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
698	u_av = REAL( fill_value, KIND = wp )
699	ENDIF
700	to_be_resorted => u_av
701	ENDIF
702
703	CASE ( 'v' )
704	flag_nr = 2
705	IF ( av == 0 ) THEN
706	to_be_resorted => v
707	ELSE
708	IF ( .NOT. ALLOCATED( v_av ) ) THEN
709	ALLOCATE( v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
710	v_av = REAL( fill_value, KIND = wp )
711	ENDIF
712	to_be_resorted => v_av
713	ENDIF
714
715	CASE ( 'thetav' )
716	IF ( av == 0 ) THEN
717	to_be_resorted => vpt
718	ELSE
719	IF ( .NOT. ALLOCATED( vpt_av ) ) THEN
720	ALLOCATE( vpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
721	vpt_av = REAL( fill_value, KIND = wp )
722	ENDIF
723	to_be_resorted => vpt_av
724	ENDIF
725
726	CASE ( 'w' )
727	flag_nr = 3
728	IF ( av == 0 ) THEN
729	to_be_resorted => w
730	ELSE
731	IF ( .NOT. ALLOCATED( w_av ) ) THEN
732	ALLOCATE( w_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
733	w_av = REAL( fill_value, KIND = wp )
734	ENDIF
735	to_be_resorted => w_av
736	ENDIF
737
738	CASE DEFAULT
739	!
740	!-- Quantities of other modules
741	IF ( .NOT. found ) THEN
742	CALL module_interface_data_output_3d( &
743	av, trimvar, found, local_pf, &
744	fill_value, resorted, nzb_do, nzt_do &
745	)
746	ENDIF
747
748	!
749	!-- Temporary workaround: ToDo: refactor local_pf allocation
750	IF ( .NOT. found .AND. urban_surface .AND. trimvar(1:4) == 'usm_' ) THEN
751	!
752	!-- For urban model quantities, it is required to re-allocate local_pf
753	nzb_do = nz_urban_b
754	nzt_do = nz_urban_t
755
756	DEALLOCATE ( local_pf )
757	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
758	local_pf = fill_value
759
760	CALL usm_data_output_3d( av, trimvar, found, local_pf, &
761	nzb_do, nzt_do )
762	resorted = .TRUE.
763
764	!
765	!-- If no soil model variable was found, re-allocate local_pf
766	IF ( .NOT. found ) THEN
767	nzb_do = nzb
768	nzt_do = nz_do3d
769
770	DEALLOCATE ( local_pf )
771	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
772	ENDIF
773
774	ENDIF
775
776	!
777	!-- Temporary workaround: ToDo: refactor local_pf allocation
778	IF ( .NOT. found .AND. land_surface ) THEN
779	!
780	!-- For soil model quantities, it is required to re-allocate local_pf
781	nzb_do = nzb_soil
782	nzt_do = nzt_soil
783
784	DEALLOCATE ( local_pf )
785	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
786	local_pf = fill_value
787
788	CALL lsm_data_output_3d( av, trimvar, found, local_pf )
789	resorted = .TRUE.
790
791	!
792	!-- If no soil model variable was found, re-allocate local_pf
793	IF ( .NOT. found ) THEN
794	nzb_do = nzb
795	nzt_do = nz_do3d
796
797	DEALLOCATE ( local_pf )
798	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
799	ENDIF
800
801	ENDIF
802
803	IF ( .NOT. found ) THEN
804	message_string = 'no output available for: ' // &
805	TRIM( do3d(av,ivar) )
806	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
807	ENDIF
808
809	END SELECT
810
811	!
812	!-- Resort the array to be output, if not done above
813	IF ( .NOT. resorted ) THEN
814	DO i = nxl, nxr
815	DO j = nys, nyn
816	DO k = nzb_do, nzt_do
817	local_pf(i,j,k) = MERGE( &
818	to_be_resorted(k,j,i), &
819	REAL( fill_value, KIND = wp ), &
820	BTEST( wall_flags_0(k,j,i), flag_nr ) )
821	ENDDO
822	ENDDO
823	ENDDO
824	ENDIF
825
826	!
827	!-- Output of the 3D-array
828	#if defined( __parallel )
829	IF ( netcdf_data_format < 5 ) THEN
830	!
831	!-- Non-parallel netCDF output. Data is output in parallel in
832	!-- FORTRAN binary format here, and later collected into one file by
833	!-- combine_plot_fields
834	IF ( myid == 0 ) THEN
835	WRITE ( 30 ) time_since_reference_point, &
836	do3d_time_count(av), av
837	ENDIF
838	DO i = 0, io_blocks-1
839	IF ( i == io_group ) THEN
840	WRITE ( 30 ) nxl, nxr, nys, nyn, nzb_do, nzt_do
841	WRITE ( 30 ) local_pf(:,:,nzb_do:nzt_do)
842	ENDIF
843
844	CALL MPI_BARRIER( comm2d, ierr )
845
846	ENDDO
847
848	ELSE
849	#if defined( __netcdf )
850	!
851	!-- Parallel output in netCDF4/HDF5 format.
852	! IF ( nxr == nx .AND. nyn /= ny ) THEN
853	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
854	! local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), &
855	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
856	! count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
857	! ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
858	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
859	! local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), &
860	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
861	! count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
862	! ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
863	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
864	! local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), &
865	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
866	! count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
867	! ELSE
868	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
869	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
870	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
871	count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
872	! ENDIF
873	CALL netcdf_handle_error( 'data_output_3d', 386 )
874	#endif
875	ENDIF
876	#else
877	#if defined( __netcdf )
878	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
879	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
880	start = (/ 1, 1, 1, do3d_time_count(av) /), &
881	count = (/ nx, ny, nzt_do-nzb_do+1, 1 /) )
882	CALL netcdf_handle_error( 'data_output_3d', 446 )
883	#endif
884	#endif
885
886	ivar = ivar + 1
887
888	!
889	!-- Deallocate temporary array
890	DEALLOCATE ( local_pf )
891
892	ENDDO
893
894	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
895
896	IF ( debug_output_timestep ) CALL debug_message( 'data_output_3d', 'end' )
897
898
899	END SUBROUTINE data_output_3d

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